Query psy12713
Match_columns 551
No_of_seqs 1026 out of 3238
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 17:49:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-44 1.3E-48 344.9 38.1 385 66-532 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6E-39 2E-43 308.6 38.0 356 60-498 32-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 2.1E-37 7.3E-42 309.7 34.1 392 60-529 5-495 (514)
4 2y4t_A DNAJ homolog subfamily 100.0 2.3E-36 7.9E-41 296.8 40.4 344 77-532 8-378 (450)
5 2y4t_A DNAJ homolog subfamily 100.0 2E-36 7E-41 297.2 39.8 363 58-536 23-444 (450)
6 3ieg_A DNAJ homolog subfamily 100.0 7E-36 2.4E-40 284.1 42.0 340 60-533 2-356 (359)
7 2xpi_A Anaphase-promoting comp 100.0 1.3E-36 4.4E-41 309.8 37.4 353 59-528 198-595 (597)
8 3fp2_A TPR repeat-containing p 100.0 2.3E-37 7.9E-42 311.2 30.7 393 60-524 24-503 (537)
9 2xpi_A Anaphase-promoting comp 100.0 3.7E-36 1.3E-40 306.5 35.8 401 60-540 116-573 (597)
10 3ieg_A DNAJ homolog subfamily 100.0 1.3E-34 4.4E-39 275.3 40.1 286 59-355 35-347 (359)
11 4g1t_A Interferon-induced prot 100.0 8.9E-36 3E-40 294.5 31.3 386 60-524 50-471 (472)
12 3fp2_A TPR repeat-containing p 100.0 6.7E-35 2.3E-39 293.3 36.1 394 60-527 58-531 (537)
13 2gw1_A Mitochondrial precursor 100.0 1.3E-34 4.4E-39 289.6 29.7 365 97-540 5-472 (514)
14 3hym_B Cell division cycle pro 100.0 9.3E-33 3.2E-37 259.3 32.6 305 123-532 13-320 (330)
15 3hym_B Cell division cycle pro 100.0 5.1E-32 1.7E-36 254.3 32.6 241 97-349 21-271 (330)
16 1fch_A Peroxisomal targeting s 100.0 6.1E-33 2.1E-37 264.8 23.6 265 70-347 34-318 (368)
17 4g1t_A Interferon-induced prot 100.0 1.1E-30 3.8E-35 258.0 35.0 226 97-328 50-295 (472)
18 1fch_A Peroxisomal targeting s 100.0 1.9E-31 6.6E-36 254.4 25.2 281 148-538 37-351 (368)
19 4eqf_A PEX5-related protein; a 100.0 1.9E-30 6.4E-35 247.2 28.0 272 58-344 62-357 (365)
20 4eqf_A PEX5-related protein; a 100.0 8.1E-31 2.8E-35 249.7 23.9 260 82-347 48-314 (365)
21 3cv0_A Peroxisome targeting si 100.0 3E-30 1E-34 241.8 27.2 276 58-348 18-320 (327)
22 2h6f_A Protein farnesyltransfe 100.0 6.5E-30 2.2E-34 240.5 23.3 257 165-530 91-366 (382)
23 2h6f_A Protein farnesyltransfe 100.0 1.7E-29 5.7E-34 237.7 25.3 254 87-356 89-361 (382)
24 3cv0_A Peroxisome targeting si 100.0 1.3E-29 4.6E-34 237.4 23.4 245 96-346 19-272 (327)
25 3u4t_A TPR repeat-containing p 100.0 2E-28 6.9E-33 222.9 25.2 257 60-328 2-269 (272)
26 2xm6_A Protein corresponding t 100.0 3.9E-26 1.3E-30 225.8 43.4 382 58-533 36-456 (490)
27 2ooe_A Cleavage stimulation fa 100.0 3.3E-26 1.1E-30 228.7 39.8 398 60-535 12-481 (530)
28 3uq3_A Heat shock protein STI1 100.0 1.4E-26 4.6E-31 208.9 29.3 237 97-354 4-253 (258)
29 3mkr_A Coatomer subunit epsilo 100.0 1.6E-26 5.5E-31 210.7 28.2 266 67-354 5-275 (291)
30 3u4t_A TPR repeat-containing p 100.0 7.3E-27 2.5E-31 212.6 24.2 248 97-357 2-264 (272)
31 3uq3_A Heat shock protein STI1 100.0 1E-26 3.6E-31 209.7 24.7 244 60-323 4-256 (258)
32 3sf4_A G-protein-signaling mod 100.0 3.1E-27 1.1E-31 228.4 21.2 264 59-344 7-297 (406)
33 2pl2_A Hypothetical conserved 100.0 1.8E-26 6.2E-31 201.3 22.6 209 97-341 4-212 (217)
34 2pl2_A Hypothetical conserved 99.9 2.3E-26 7.8E-31 200.7 22.4 199 59-272 3-212 (217)
35 3mkr_A Coatomer subunit epsilo 99.9 9E-26 3.1E-30 205.8 24.6 222 107-346 8-232 (291)
36 3sf4_A G-protein-signaling mod 99.9 1.9E-25 6.6E-30 215.8 25.0 248 61-344 47-337 (406)
37 4a1s_A PINS, partner of inscut 99.9 9.1E-26 3.1E-30 218.5 21.8 250 60-344 47-333 (411)
38 2ooe_A Cleavage stimulation fa 99.9 6.2E-24 2.1E-28 212.3 35.6 374 84-537 2-445 (530)
39 2xm6_A Protein corresponding t 99.9 5.3E-23 1.8E-27 203.4 41.5 364 80-538 26-424 (490)
40 3ro2_A PINS homolog, G-protein 99.9 1.5E-25 5E-30 210.7 21.2 261 61-343 5-292 (338)
41 3ro2_A PINS homolog, G-protein 99.9 2E-25 6.9E-30 209.7 21.0 250 61-346 43-335 (338)
42 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.5E-24 8.6E-29 196.0 26.5 250 71-337 15-269 (275)
43 4a1s_A PINS, partner of inscut 99.9 2.9E-25 1E-29 215.0 20.3 252 62-349 87-378 (411)
44 2q7f_A YRRB protein; TPR, prot 99.9 2.9E-24 9.9E-29 191.7 22.4 217 58-288 20-236 (243)
45 2q7f_A YRRB protein; TPR, prot 99.9 3E-24 1E-28 191.6 21.8 222 96-329 21-242 (243)
46 3vtx_A MAMA; tetratricopeptide 99.9 1E-23 3.5E-28 179.2 23.3 173 169-348 3-175 (184)
47 3e4b_A ALGK; tetratricopeptide 99.9 3.5E-24 1.2E-28 208.4 22.6 254 65-343 7-280 (452)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 9E-24 3.1E-28 192.4 23.9 185 152-345 20-208 (275)
49 2ho1_A Type 4 fimbrial biogene 99.9 4.7E-23 1.6E-27 184.9 26.9 207 98-350 37-245 (252)
50 2ond_A Cleavage stimulation fa 99.9 2.4E-23 8.2E-28 192.4 24.8 183 154-342 33-231 (308)
51 2ho1_A Type 4 fimbrial biogene 99.9 1.3E-22 4.6E-27 182.0 28.6 212 58-283 34-247 (252)
52 3e4b_A ALGK; tetratricopeptide 99.9 4.3E-23 1.5E-27 200.7 26.3 335 60-528 34-401 (452)
53 3vtx_A MAMA; tetratricopeptide 99.9 5.3E-23 1.8E-27 174.8 23.4 170 137-314 6-175 (184)
54 2ond_A Cleavage stimulation fa 99.9 3.3E-22 1.1E-26 184.8 30.2 222 115-348 33-275 (308)
55 4abn_A Tetratricopeptide repea 99.9 3.7E-23 1.3E-27 202.4 24.9 215 113-340 83-318 (474)
56 2vq2_A PILW, putative fimbrial 99.9 3.1E-22 1.1E-26 176.1 28.3 209 97-317 7-219 (225)
57 1ouv_A Conserved hypothetical 99.9 6.3E-22 2.1E-26 179.8 29.6 234 97-349 5-257 (273)
58 2vq2_A PILW, putative fimbrial 99.9 5.9E-22 2E-26 174.3 27.1 214 58-285 5-222 (225)
59 1ouv_A Conserved hypothetical 99.9 1.7E-21 5.6E-26 177.0 29.8 235 59-315 4-257 (273)
60 4abn_A Tetratricopeptide repea 99.9 5.8E-23 2E-27 201.0 21.1 221 75-305 82-317 (474)
61 3ulq_A Response regulator aspa 99.9 2.4E-22 8.3E-27 192.2 23.5 325 58-515 9-371 (383)
62 4gyw_A UDP-N-acetylglucosamine 99.9 2.6E-22 8.9E-27 203.5 20.2 174 167-347 5-178 (723)
63 4i17_A Hypothetical protein; T 99.9 9.6E-22 3.3E-26 173.4 21.5 204 137-355 8-221 (228)
64 4i17_A Hypothetical protein; T 99.9 2.6E-21 8.8E-26 170.6 23.4 208 60-288 6-223 (228)
65 3nf1_A KLC 1, kinesin light ch 99.9 1.9E-22 6.6E-27 187.1 14.4 259 136-515 27-310 (311)
66 3ulq_A Response regulator aspa 99.9 4.1E-21 1.4E-25 183.6 23.3 239 99-346 104-371 (383)
67 3dra_A Protein farnesyltransfe 99.9 5.5E-20 1.9E-24 165.8 28.8 252 62-322 33-301 (306)
68 3q15_A PSP28, response regulat 99.9 8.1E-21 2.8E-25 181.1 24.5 323 58-514 9-367 (378)
69 4gyw_A UDP-N-acetylglucosamine 99.9 1.7E-21 5.9E-26 197.5 20.0 170 96-276 7-176 (723)
70 3qky_A Outer membrane assembly 99.9 1.5E-20 5.1E-25 169.4 23.9 205 58-264 12-251 (261)
71 3nf1_A KLC 1, kinesin light ch 99.9 3.3E-22 1.1E-26 185.5 12.4 256 57-346 23-310 (311)
72 1xi4_A Clathrin heavy chain; a 99.9 6.2E-19 2.1E-23 181.9 37.3 357 60-537 984-1375(1630)
73 1hz4_A MALT regulatory protein 99.9 5.2E-19 1.8E-23 168.5 31.2 278 61-346 14-325 (373)
74 3dra_A Protein farnesyltransfe 99.9 4.3E-19 1.5E-23 159.9 27.4 230 114-354 49-299 (306)
75 3qky_A Outer membrane assembly 99.9 1E-19 3.5E-24 163.9 22.8 200 136-354 15-235 (261)
76 3q15_A PSP28, response regulat 99.8 1.2E-19 4.2E-24 172.9 23.6 245 64-346 104-368 (378)
77 1qqe_A Vesicular transport pro 99.8 9.8E-20 3.4E-24 166.6 21.0 176 153-349 33-234 (292)
78 1qqe_A Vesicular transport pro 99.8 1E-19 3.6E-24 166.4 20.2 223 76-351 32-277 (292)
79 1b89_A Protein (clathrin heavy 99.8 1.2E-20 4E-25 175.0 12.9 320 72-541 14-350 (449)
80 2pzi_A Probable serine/threoni 99.8 1.5E-19 5.1E-24 184.8 22.2 188 89-295 388-583 (681)
81 1hz4_A MALT regulatory protein 99.8 4.8E-18 1.6E-22 161.8 31.2 241 97-345 13-284 (373)
82 2pzi_A Probable serine/threoni 99.8 8E-20 2.7E-24 186.8 19.6 191 147-346 402-608 (681)
83 3as5_A MAMA; tetratricopeptide 99.8 3.6E-19 1.2E-23 151.2 20.0 169 172-347 9-177 (186)
84 3urz_A Uncharacterized protein 99.8 1.9E-19 6.6E-24 155.6 18.4 184 138-348 6-191 (208)
85 3as5_A MAMA; tetratricopeptide 99.8 6.3E-19 2.1E-23 149.7 21.3 170 136-313 8-177 (186)
86 1xi4_A Clathrin heavy chain; a 99.8 1.5E-17 5E-22 171.9 34.3 317 67-529 1055-1413(1630)
87 3urz_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 152.8 20.2 186 60-278 3-190 (208)
88 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.2E-18 4.1E-23 152.7 22.6 196 60-280 3-219 (225)
89 4ga2_A E3 SUMO-protein ligase 99.8 2.7E-20 9.4E-25 151.4 10.1 140 142-288 3-143 (150)
90 4ga2_A E3 SUMO-protein ligase 99.8 4.7E-20 1.6E-24 149.9 11.1 146 177-329 3-149 (150)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.7E-18 9.4E-23 150.5 22.8 210 97-348 3-218 (225)
92 3dss_A Geranylgeranyl transfer 99.8 6.8E-17 2.3E-21 146.2 31.7 233 110-353 41-314 (331)
93 3dss_A Geranylgeranyl transfer 99.8 6.2E-17 2.1E-21 146.4 31.1 247 71-325 39-320 (331)
94 1b89_A Protein (clathrin heavy 99.8 8E-20 2.7E-24 169.4 12.2 242 60-345 31-274 (449)
95 3edt_B KLC 2, kinesin light ch 99.8 5.6E-19 1.9E-23 161.2 16.5 200 136-343 43-281 (283)
96 3edt_B KLC 2, kinesin light ch 99.8 7.1E-19 2.4E-23 160.5 16.0 225 74-309 14-281 (283)
97 3q7a_A Farnesyltransferase alp 99.8 6.8E-17 2.3E-21 146.6 26.5 228 114-353 70-342 (349)
98 4e6h_A MRNA 3'-END-processing 99.8 6E-15 2E-19 147.9 38.8 399 59-532 64-556 (679)
99 4gco_A Protein STI-1; structur 99.8 5.7E-18 2E-22 132.7 13.6 117 238-355 6-122 (126)
100 2r5s_A Uncharacterized protein 99.8 4.7E-18 1.6E-22 142.6 13.9 161 139-307 9-171 (176)
101 4gco_A Protein STI-1; structur 99.8 1.3E-17 4.3E-22 130.7 14.6 120 87-214 5-124 (126)
102 3q7a_A Farnesyltransferase alp 99.8 1.4E-16 4.7E-21 144.6 23.1 164 185-355 68-249 (349)
103 2r5s_A Uncharacterized protein 99.8 2.2E-17 7.5E-22 138.5 15.4 168 167-342 2-172 (176)
104 3gyz_A Chaperone protein IPGC; 99.7 5.3E-18 1.8E-22 136.7 10.5 123 225-348 16-138 (151)
105 3qou_A Protein YBBN; thioredox 99.7 5.4E-17 1.8E-21 147.7 18.3 168 168-342 114-283 (287)
106 3qou_A Protein YBBN; thioredox 99.7 2.6E-16 8.8E-21 143.2 19.4 165 136-308 117-283 (287)
107 2vsy_A XCC0866; transferase, g 99.7 1.2E-16 3.9E-21 161.0 18.9 160 152-318 4-166 (568)
108 3gyz_A Chaperone protein IPGC; 99.7 2.5E-17 8.5E-22 132.7 11.2 124 74-205 15-138 (151)
109 2ifu_A Gamma-SNAP; membrane fu 99.7 7.1E-17 2.4E-21 148.7 15.9 222 72-335 2-253 (307)
110 4f3v_A ESX-1 secretion system 99.7 4.1E-17 1.4E-21 143.1 13.1 206 138-354 9-247 (282)
111 4f3v_A ESX-1 secretion system 99.7 9.7E-17 3.3E-21 140.7 14.6 206 60-277 6-240 (282)
112 2vsy_A XCC0866; transferase, g 99.7 2.8E-16 9.5E-21 158.2 18.8 162 112-284 3-167 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.7 1.1E-16 3.8E-21 147.4 12.9 201 110-348 3-228 (307)
114 2vgx_A Chaperone SYCD; alterna 99.7 1.2E-16 4E-21 129.3 11.1 118 232-350 8-125 (148)
115 3mv2_B Coatomer subunit epsilo 99.7 5.1E-15 1.7E-19 131.6 22.2 259 60-354 13-293 (310)
116 4e6h_A MRNA 3'-END-processing 99.7 1.5E-13 5E-18 137.9 35.3 403 77-533 48-520 (679)
117 1p5q_A FKBP52, FK506-binding p 99.7 3.7E-18 1.3E-22 158.9 2.1 203 110-345 77-296 (336)
118 2c2l_A CHIP, carboxy terminus 99.7 1.1E-15 3.9E-20 138.3 17.8 196 242-515 1-202 (281)
119 2c2l_A CHIP, carboxy terminus 99.7 2.2E-16 7.6E-21 143.0 13.0 196 97-343 3-199 (281)
120 3rjv_A Putative SEL1 repeat pr 99.7 4.1E-15 1.4E-19 128.6 20.1 179 116-309 4-197 (212)
121 1dce_A Protein (RAB geranylger 99.7 2.9E-16 1E-20 155.5 14.3 194 146-346 38-270 (567)
122 1p5q_A FKBP52, FK506-binding p 99.7 2E-17 6.9E-22 154.0 4.4 185 72-272 76-292 (336)
123 2xcb_A PCRH, regulatory protei 99.7 5.6E-16 1.9E-20 124.7 11.9 121 232-353 5-125 (142)
124 3rjv_A Putative SEL1 repeat pr 99.7 5.5E-15 1.9E-19 127.8 18.8 179 154-346 3-200 (212)
125 2vgx_A Chaperone SYCD; alterna 99.7 7.4E-16 2.5E-20 124.6 12.4 121 79-207 5-125 (148)
126 2fo7_A Synthetic consensus TPR 99.6 2.1E-14 7E-19 114.4 18.7 63 142-205 7-69 (136)
127 2fo7_A Synthetic consensus TPR 99.6 1.9E-14 6.4E-19 114.7 18.3 133 173-312 3-135 (136)
128 2e2e_A Formate-dependent nitri 99.6 3E-15 1E-19 125.7 14.0 135 220-355 19-156 (177)
129 1dce_A Protein (RAB geranylger 99.6 8.8E-16 3E-20 152.0 12.3 202 227-516 45-271 (567)
130 2xcb_A PCRH, regulatory protei 99.6 3.8E-15 1.3E-19 119.8 13.2 120 82-209 5-124 (142)
131 3upv_A Heat shock protein STI1 99.6 1.1E-14 3.9E-19 114.4 14.9 114 242-356 1-120 (126)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.7E-14 5.8E-19 125.2 17.3 135 60-205 5-155 (213)
133 3mv2_B Coatomer subunit epsilo 99.6 5.5E-14 1.9E-18 125.0 20.0 188 230-522 85-292 (310)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.6E-14 1.9E-18 122.0 18.1 130 174-313 9-154 (213)
135 2qfc_A PLCR protein; TPR, HTH, 99.6 8.2E-14 2.8E-18 127.4 19.3 141 60-201 74-226 (293)
136 2qfc_A PLCR protein; TPR, HTH, 99.6 5.9E-14 2E-18 128.3 18.1 172 172-344 76-267 (293)
137 3upv_A Heat shock protein STI1 99.6 5.4E-14 1.8E-18 110.5 15.1 111 97-212 3-119 (126)
138 2fbn_A 70 kDa peptidylprolyl i 99.6 3.3E-15 1.1E-19 128.0 8.4 175 142-342 10-185 (198)
139 2e2e_A Formate-dependent nitri 99.6 2.5E-14 8.4E-19 120.1 13.4 130 146-282 20-152 (177)
140 3u3w_A Transcriptional activat 99.6 1.3E-13 4.5E-18 126.0 19.3 180 60-274 74-266 (293)
141 4gcn_A Protein STI-1; structur 99.6 2.9E-14 9.8E-19 111.8 12.3 104 244-348 7-117 (127)
142 1a17_A Serine/threonine protei 99.6 9.4E-14 3.2E-18 115.1 16.1 132 60-199 12-145 (166)
143 3sz7_A HSC70 cochaperone (SGT) 99.6 7.4E-14 2.5E-18 115.4 15.0 113 241-354 7-119 (164)
144 1a17_A Serine/threonine protei 99.6 2.3E-13 7.9E-18 112.7 17.5 107 97-208 12-118 (166)
145 3u3w_A Transcriptional activat 99.6 1.7E-13 5.9E-18 125.2 18.0 179 97-310 74-267 (293)
146 2lni_A Stress-induced-phosphop 99.5 1.5E-13 5.2E-18 109.0 15.2 122 57-186 12-133 (133)
147 1hxi_A PEX5, peroxisome target 99.5 5.6E-14 1.9E-18 109.0 12.1 102 247-349 19-120 (121)
148 2fbn_A 70 kDa peptidylprolyl i 99.5 1.6E-14 5.5E-19 123.7 9.5 142 73-218 16-169 (198)
149 3sz7_A HSC70 cochaperone (SGT) 99.5 1.4E-13 4.8E-18 113.7 14.7 115 59-181 9-123 (164)
150 2hr2_A Hypothetical protein; a 99.5 2.8E-14 9.7E-19 112.8 9.6 110 60-170 10-135 (159)
151 2lni_A Stress-induced-phosphop 99.5 1.8E-13 6.2E-18 108.6 14.5 79 247-326 52-130 (133)
152 4gcn_A Protein STI-1; structur 99.5 1.1E-13 3.7E-18 108.5 12.8 105 60-168 7-114 (127)
153 2hr2_A Hypothetical protein; a 99.5 5.8E-14 2E-18 111.1 10.9 104 245-349 11-137 (159)
154 3q49_B STIP1 homology and U bo 99.5 3.4E-13 1.2E-17 107.6 15.6 115 240-355 4-123 (137)
155 2vyi_A SGTA protein; chaperone 99.5 1.9E-13 6.4E-18 108.1 13.7 104 225-329 26-129 (131)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.6E-14 8.7E-19 138.9 10.1 150 73-232 246-406 (457)
157 1hxi_A PEX5, peroxisome target 99.5 1.1E-13 3.8E-18 107.3 11.1 104 60-171 16-119 (121)
158 2vyi_A SGTA protein; chaperone 99.5 9.6E-13 3.3E-17 103.9 16.3 114 139-259 15-128 (131)
159 3rkv_A Putative peptidylprolyl 99.5 2.4E-13 8.2E-18 112.1 12.4 116 60-183 10-144 (162)
160 1na0_A Designed protein CTPR3; 99.5 1.9E-12 6.6E-17 101.2 17.1 101 225-326 23-123 (125)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.3E-14 7.9E-19 139.2 7.1 168 148-342 246-414 (457)
162 3rkv_A Putative peptidylprolyl 99.5 5.8E-13 2E-17 109.7 14.3 110 245-355 11-139 (162)
163 1elw_A TPR1-domain of HOP; HOP 99.5 1.5E-12 5E-17 100.7 15.4 111 244-355 3-113 (118)
164 3q49_B STIP1 homology and U bo 99.5 8.7E-13 3E-17 105.3 14.4 87 225-312 23-109 (137)
165 1na0_A Designed protein CTPR3; 99.5 2.6E-12 8.8E-17 100.4 16.5 113 171-289 9-121 (125)
166 1elw_A TPR1-domain of HOP; HOP 99.5 1.7E-12 5.7E-17 100.4 14.9 110 98-212 4-113 (118)
167 2xev_A YBGF; tetratricopeptide 99.5 2E-12 6.9E-17 101.9 15.3 117 63-181 4-120 (129)
168 2uy1_A Cleavage stimulation fa 99.4 5.4E-10 1.8E-14 109.0 34.6 265 59-340 12-312 (493)
169 4b4t_Q 26S proteasome regulato 99.4 3.9E-12 1.3E-16 123.5 19.4 208 60-274 3-245 (434)
170 2dba_A Smooth muscle cell asso 99.4 2.7E-12 9.1E-17 103.9 15.3 115 240-355 23-140 (148)
171 2kck_A TPR repeat; tetratricop 99.4 4.9E-13 1.7E-17 102.4 10.1 106 241-347 2-110 (112)
172 3gw4_A Uncharacterized protein 99.4 3.1E-12 1E-16 109.9 16.0 167 71-275 2-177 (203)
173 3gw4_A Uncharacterized protein 99.4 1.9E-12 6.4E-17 111.2 14.2 163 147-345 3-178 (203)
174 1wao_1 Serine/threonine protei 99.4 4.8E-14 1.7E-18 137.4 4.7 138 60-205 5-155 (477)
175 2dba_A Smooth muscle cell asso 99.4 5.5E-12 1.9E-16 102.0 15.8 120 58-182 25-144 (148)
176 4b4t_Q 26S proteasome regulato 99.4 6.7E-12 2.3E-16 121.9 19.1 201 142-344 10-246 (434)
177 2if4_A ATFKBP42; FKBP-like, al 99.4 4.3E-13 1.5E-17 124.7 9.2 156 60-245 178-333 (338)
178 2kck_A TPR repeat; tetratricop 99.4 2.2E-12 7.6E-17 98.6 11.7 106 167-278 2-110 (112)
179 1wao_1 Serine/threonine protei 99.4 9.1E-13 3.1E-17 128.4 11.6 128 219-347 14-154 (477)
180 2xev_A YBGF; tetratricopeptide 99.4 1.4E-11 4.6E-16 97.1 16.1 109 100-210 4-115 (129)
181 1zu2_A Mitochondrial import re 99.4 2.6E-12 9E-17 101.3 10.7 88 225-313 16-124 (158)
182 1elr_A TPR2A-domain of HOP; HO 99.4 8.5E-12 2.9E-16 98.4 13.8 108 244-353 3-117 (131)
183 2if4_A ATFKBP42; FKBP-like, al 99.4 7.6E-13 2.6E-17 123.0 8.1 156 170-349 178-334 (338)
184 1ihg_A Cyclophilin 40; ppiase 99.4 7.3E-12 2.5E-16 117.6 14.8 127 60-191 222-361 (370)
185 3k9i_A BH0479 protein; putativ 99.4 9.3E-13 3.2E-17 101.7 7.0 92 225-317 4-98 (117)
186 2uy1_A Cleavage stimulation fa 99.3 2.3E-09 7.7E-14 104.6 31.5 221 73-319 6-251 (493)
187 1zu2_A Mitochondrial import re 99.3 7.9E-12 2.7E-16 98.6 11.4 105 148-283 14-129 (158)
188 1elr_A TPR2A-domain of HOP; HO 99.3 2E-11 6.9E-16 96.2 14.1 109 97-211 3-118 (131)
189 3ro3_A PINS homolog, G-protein 99.3 1.8E-11 6.2E-16 100.7 13.5 143 60-203 8-161 (164)
190 3k9i_A BH0479 protein; putativ 99.3 2.8E-12 9.6E-17 98.9 7.5 95 74-173 3-97 (117)
191 1ihg_A Cyclophilin 40; ppiase 99.3 2E-11 6.8E-16 114.6 14.5 120 138-264 225-360 (370)
192 3ro3_A PINS homolog, G-protein 99.3 1.4E-11 4.7E-16 101.4 11.2 62 137-199 10-77 (164)
193 2l6j_A TPR repeat-containing p 99.2 2.1E-11 7.1E-16 93.0 5.9 96 244-340 3-104 (111)
194 2l6j_A TPR repeat-containing p 99.2 4.7E-11 1.6E-15 91.0 7.9 89 455-543 10-104 (111)
195 2kat_A Uncharacterized protein 99.2 3E-10 1E-14 87.1 11.5 85 263-348 3-87 (115)
196 1na3_A Designed protein CTPR2; 99.1 5.2E-10 1.8E-14 81.6 11.7 85 243-328 7-91 (91)
197 2kat_A Uncharacterized protein 99.1 5.4E-10 1.9E-14 85.7 12.2 95 229-324 3-99 (115)
198 3n71_A Histone lysine methyltr 99.1 2.2E-09 7.4E-14 103.7 14.5 135 64-200 312-464 (490)
199 1na3_A Designed protein CTPR2; 99.0 2.8E-09 9.7E-14 77.5 11.8 83 97-184 8-90 (91)
200 3ma5_A Tetratricopeptide repea 99.0 1.6E-09 5.5E-14 80.4 9.7 73 275-348 3-75 (100)
201 2kc7_A BFR218_protein; tetratr 99.0 9.6E-10 3.3E-14 81.6 8.0 91 249-348 4-95 (99)
202 3ma5_A Tetratricopeptide repea 99.0 3.3E-09 1.1E-13 78.7 10.1 86 240-326 2-89 (100)
203 3ly7_A Transcriptional activat 99.0 1.2E-07 4E-12 86.0 21.5 172 4-206 161-345 (372)
204 2kc7_A BFR218_protein; tetratr 99.0 2.4E-09 8.1E-14 79.4 8.9 89 141-244 5-94 (99)
205 3u64_A Protein TP_0956; tetrat 98.9 1.5E-07 5.2E-12 81.4 20.0 115 198-312 145-272 (301)
206 1klx_A Cysteine rich protein B 98.9 4.2E-08 1.4E-12 77.5 14.7 119 74-210 8-134 (138)
207 3ly7_A Transcriptional activat 98.9 2.6E-07 8.9E-12 83.7 21.3 156 162-349 185-345 (372)
208 1klx_A Cysteine rich protein B 98.9 5.3E-08 1.8E-12 76.9 14.5 112 225-344 9-127 (138)
209 3n71_A Histone lysine methyltr 98.9 3.4E-08 1.2E-12 95.4 14.6 129 103-239 314-463 (490)
210 3u64_A Protein TP_0956; tetrat 98.8 9.2E-08 3.1E-12 82.8 13.8 186 75-278 46-273 (301)
211 3bee_A Putative YFRE protein; 98.7 1.1E-07 3.7E-12 68.6 10.3 72 275-347 2-76 (93)
212 1pc2_A Mitochondria fission pr 98.7 2.2E-07 7.4E-12 72.4 12.5 94 225-319 12-110 (152)
213 3bee_A Putative YFRE protein; 98.7 2.6E-07 9E-12 66.5 10.4 72 241-313 2-76 (93)
214 1pc2_A Mitochondria fission pr 98.6 4.6E-07 1.6E-11 70.6 11.4 95 260-355 13-112 (152)
215 3qww_A SET and MYND domain-con 98.6 9.5E-07 3.3E-11 83.8 15.3 90 74-165 311-410 (433)
216 3qwp_A SET and MYND domain-con 98.6 7.6E-07 2.6E-11 84.7 14.0 96 68-165 294-399 (429)
217 2v5f_A Prolyl 4-hydroxylase su 98.6 2.7E-07 9.2E-12 68.6 8.4 73 454-526 10-89 (104)
218 3qww_A SET and MYND domain-con 98.4 1.8E-06 6E-11 82.0 13.0 98 109-208 309-424 (433)
219 2v5f_A Prolyl 4-hydroxylase su 98.4 2.9E-06 1E-10 62.9 10.9 76 245-321 5-87 (104)
220 4g26_A Pentatricopeptide repea 98.4 6.1E-05 2.1E-09 73.4 22.4 175 174-349 29-212 (501)
221 3qwp_A SET and MYND domain-con 98.3 6.7E-06 2.3E-10 78.2 14.3 104 103-208 292-413 (429)
222 4g26_A Pentatricopeptide repea 98.3 0.00016 5.6E-09 70.4 23.1 163 102-274 30-204 (501)
223 1nzn_A CGI-135 protein, fissio 98.2 3.5E-05 1.2E-09 57.6 12.3 97 225-322 15-116 (126)
224 4h7y_A Dual specificity protei 98.0 5.3E-05 1.8E-09 57.8 10.5 109 240-350 8-130 (161)
225 1nzn_A CGI-135 protein, fissio 98.0 7.2E-05 2.5E-09 55.9 10.7 97 259-356 15-116 (126)
226 4h7y_A Dual specificity protei 98.0 7.1E-05 2.4E-09 57.1 9.9 114 166-279 8-128 (161)
227 3ffl_A Anaphase-promoting comp 97.8 5.6E-05 1.9E-09 59.2 7.3 123 58-197 17-148 (167)
228 3o48_A Mitochondria fission 1 97.5 0.0024 8.3E-08 47.8 11.6 76 244-320 39-118 (134)
229 3o48_A Mitochondria fission 1 97.4 0.00039 1.3E-08 52.0 7.0 68 463-530 57-125 (134)
230 1y8m_A FIS1; mitochondria, unk 97.4 0.0056 1.9E-07 46.5 13.2 77 242-319 36-116 (144)
231 3ffl_A Anaphase-promoting comp 97.4 0.0033 1.1E-07 49.3 12.0 139 97-255 19-165 (167)
232 1y8m_A FIS1; mitochondria, unk 97.3 0.011 3.6E-07 45.0 13.8 83 202-287 36-119 (144)
233 3txn_A 26S proteasome regulato 97.0 0.22 7.4E-06 46.1 23.2 139 61-200 19-168 (394)
234 1zbp_A Hypothetical protein VP 96.5 0.068 2.3E-06 45.8 13.6 64 290-354 8-71 (273)
235 3txn_A 26S proteasome regulato 96.5 0.54 1.8E-05 43.5 24.5 176 97-274 18-210 (394)
236 4gns_B Protein CSD3, chitin bi 96.3 0.049 1.7E-06 55.0 13.4 59 247-306 339-397 (754)
237 3mkq_A Coatomer beta'-subunit; 96.3 0.26 8.9E-06 51.4 19.9 101 68-197 606-707 (814)
238 4b4t_P 26S proteasome regulato 96.3 0.47 1.6E-05 45.2 19.7 205 60-274 16-247 (445)
239 4gns_B Protein CSD3, chitin bi 96.3 0.042 1.5E-06 55.4 12.7 113 227-341 265-398 (754)
240 3mkq_B Coatomer subunit alpha; 96.2 0.19 6.3E-06 40.2 13.7 109 60-197 7-115 (177)
241 1qsa_A Protein (soluble lytic 96.2 1.2 4E-05 44.2 33.0 116 225-342 228-347 (618)
242 1qsa_A Protein (soluble lytic 96.1 1.2 4.2E-05 44.1 27.5 127 61-202 6-133 (618)
243 4b4t_P 26S proteasome regulato 96.0 1.2 4E-05 42.5 20.9 98 245-343 137-247 (445)
244 3kae_A CDC27, possible protein 95.8 0.49 1.7E-05 37.0 21.3 124 68-207 9-150 (242)
245 4b4t_R RPN7, 26S proteasome re 95.6 0.1 3.5E-06 49.6 11.8 104 97-202 130-239 (429)
246 3kae_A CDC27, possible protein 95.5 0.64 2.2E-05 36.3 17.9 104 242-351 30-151 (242)
247 1zbp_A Hypothetical protein VP 95.5 0.48 1.7E-05 40.6 14.0 59 146-205 7-65 (273)
248 3mkq_A Coatomer beta'-subunit; 95.2 1 3.4E-05 46.9 18.8 99 145-271 608-707 (814)
249 2ff4_A Probable regulatory pro 95.1 0.43 1.5E-05 44.5 14.2 59 175-239 175-233 (388)
250 3spa_A Mtrpol, DNA-directed RN 95.1 0.32 1.1E-05 50.5 13.8 126 97-237 126-258 (1134)
251 3mkq_B Coatomer subunit alpha; 94.7 1.3 4.6E-05 35.3 15.1 99 225-342 19-117 (177)
252 4b4t_R RPN7, 26S proteasome re 94.6 0.3 1E-05 46.3 11.6 103 138-243 133-240 (429)
253 2ff4_A Probable regulatory pro 94.5 0.73 2.5E-05 43.0 13.9 59 283-342 175-233 (388)
254 3spa_A Mtrpol, DNA-directed RN 94.1 0.71 2.4E-05 48.0 13.5 84 225-309 141-230 (1134)
255 4b4t_S RPN3, 26S proteasome re 94.0 0.13 4.5E-06 48.9 7.7 137 66-205 141-304 (523)
256 1ya0_A SMG-7 transcript varian 93.8 0.44 1.5E-05 45.7 11.0 79 138-217 154-232 (497)
257 1ya0_A SMG-7 transcript varian 93.5 0.54 1.9E-05 45.1 11.0 63 226-288 167-229 (497)
258 4fhn_B Nucleoporin NUP120; pro 93.0 3.9 0.00013 44.4 18.1 123 67-197 818-964 (1139)
259 4ady_A RPN2, 26S proteasome re 93.0 2.1 7.1E-05 44.4 14.7 259 71-347 384-661 (963)
260 4ady_A RPN2, 26S proteasome re 91.5 9 0.00031 39.8 17.3 255 60-328 412-679 (963)
261 4fhn_B Nucleoporin NUP120; pro 91.0 5 0.00017 43.6 16.1 164 144-331 820-988 (1139)
262 4b4t_S RPN3, 26S proteasome re 90.8 0.35 1.2E-05 46.0 6.0 122 223-347 148-303 (523)
263 2wpv_A GET4, UPF0363 protein Y 87.5 15 0.00051 32.6 19.1 83 242-342 131-216 (312)
264 1wy6_A Hypothetical protein ST 86.8 5 0.00017 30.2 8.3 81 258-343 74-154 (172)
265 3lvg_A Clathrin heavy chain 1; 82.5 0.00057 2E-08 63.4 -17.1 235 59-338 52-286 (624)
266 2wpv_A GET4, UPF0363 protein Y 80.3 31 0.0011 30.6 21.4 133 60-195 12-158 (312)
267 3lpz_A GET4 (YOR164C homolog); 74.8 47 0.0016 29.7 27.3 237 60-327 11-295 (336)
268 2ijq_A Hypothetical protein; s 73.9 26 0.00089 27.4 8.9 68 60-127 31-104 (161)
269 2cwy_A Hypothetical protein TT 72.9 14 0.00049 25.7 6.7 60 65-126 5-67 (94)
270 3ax2_A Mitochondrial import re 69.8 8.2 0.00028 25.4 4.4 38 318-355 21-58 (73)
271 4gq2_M Nucleoporin NUP120; bet 68.9 83 0.0028 33.2 14.4 116 67-206 816-933 (950)
272 2vkj_A TM1634; membrane protei 68.6 21 0.0007 24.2 6.1 33 60-92 52-84 (106)
273 3t5x_A PCI domain-containing p 67.5 9.1 0.00031 31.5 5.5 33 484-516 15-47 (203)
274 1wy6_A Hypothetical protein ST 67.0 39 0.0013 25.6 13.7 130 62-201 8-155 (172)
275 2crb_A Nuclear receptor bindin 66.3 7.8 0.00027 26.5 3.8 29 482-510 14-42 (97)
276 3ax2_A Mitochondrial import re 64.7 14 0.00047 24.3 4.7 33 487-519 21-53 (73)
277 1om2_A Protein (mitochondrial 62.5 14 0.00046 25.8 4.6 38 318-355 24-61 (95)
278 2rpa_A Katanin P60 ATPase-cont 59.3 11 0.00039 25.1 3.7 31 60-90 11-41 (78)
279 2w2u_A Hypothetical P60 katani 55.2 14 0.00049 25.0 3.8 28 61-88 19-46 (83)
280 2ijq_A Hypothetical protein; s 53.0 80 0.0027 24.7 8.6 66 100-166 34-104 (161)
281 3uzd_A 14-3-3 protein gamma; s 52.3 1.1E+02 0.0037 26.0 15.0 61 62-124 5-66 (248)
282 2ynq_A ESSB; membrane protein, 51.5 83 0.0028 24.4 8.4 90 62-163 9-99 (161)
283 2v6y_A AAA family ATPase, P60 51.3 18 0.00061 24.5 3.8 25 63-87 13-37 (83)
284 2crb_A Nuclear receptor bindin 49.1 19 0.00063 24.8 3.4 27 62-88 16-42 (97)
285 1om2_A Protein (mitochondrial 48.8 30 0.001 24.1 4.6 29 65-93 24-52 (95)
286 4a5x_A MITD1, MIT domain-conta 48.1 24 0.00084 24.1 4.1 30 60-89 15-44 (86)
287 2cfu_A SDSA1; SDS-hydrolase, l 48.0 28 0.00096 34.9 6.2 52 483-534 449-500 (658)
288 3t5x_A PCI domain-containing p 47.3 64 0.0022 26.4 7.3 55 61-115 14-70 (203)
289 3lpz_A GET4 (YOR164C homolog); 47.3 1.6E+02 0.0054 26.4 25.0 66 242-307 133-214 (336)
290 4gq2_M Nucleoporin NUP120; bet 47.1 2.8E+02 0.0096 29.3 16.6 52 142-198 816-867 (950)
291 2rpa_A Katanin P60 ATPase-cont 46.7 17 0.00059 24.2 3.0 27 486-512 15-41 (78)
292 3esl_A Checkpoint serine/threo 46.3 1.2E+02 0.0041 24.7 12.7 77 266-344 58-145 (202)
293 3lvg_A Clathrin heavy chain 1; 45.9 0.29 9.8E-06 46.0 -7.6 214 60-301 82-325 (624)
294 3ubw_A 14-3-3E, 14-3-3 protein 45.8 1.4E+02 0.0048 25.4 15.8 63 60-124 30-93 (261)
295 4a5x_A MITD1, MIT domain-conta 45.8 68 0.0023 21.9 6.0 18 494-511 27-44 (86)
296 4aez_C MAD3, mitotic spindle c 44.9 1.3E+02 0.0045 24.9 8.6 81 117-204 96-183 (223)
297 2cfu_A SDSA1; SDS-hydrolase, l 44.2 29 0.00098 34.9 5.6 49 61-112 449-497 (658)
298 3mv2_A Coatomer subunit alpha; 42.6 1.8E+02 0.0062 25.8 11.9 33 60-92 113-145 (325)
299 3t5v_B Nuclear mRNA export pro 41.8 72 0.0025 30.1 7.5 64 249-313 180-254 (455)
300 3t5v_B Nuclear mRNA export pro 41.6 43 0.0015 31.6 6.0 63 141-204 181-254 (455)
301 3mkr_B Coatomer subunit alpha; 41.0 1.9E+02 0.0065 25.6 11.8 33 60-92 101-133 (320)
302 2v6y_A AAA family ATPase, P60 40.9 25 0.00087 23.8 3.2 32 465-511 8-39 (83)
303 2v6x_A Vacuolar protein sortin 39.7 34 0.0012 23.2 3.8 30 60-89 12-41 (85)
304 1wfd_A Hypothetical protein 15 38.8 35 0.0012 23.7 3.8 30 60-89 14-43 (93)
305 2br9_A 14-3-3E, 14-3-3 protein 38.4 1.8E+02 0.006 24.4 14.6 60 61-122 5-65 (234)
306 2dl1_A Spartin; SPG20, MIT, st 37.7 38 0.0013 24.5 3.8 45 463-515 17-61 (116)
307 4b4t_O 26S proteasome regulato 36.0 2.6E+02 0.0089 25.7 13.3 92 72-164 87-196 (393)
308 3bqo_A Telomeric repeat-bindin 36.0 22 0.00075 28.7 2.5 30 492-521 126-155 (211)
309 2w2u_A Hypothetical P60 katani 35.8 1E+02 0.0034 20.8 6.4 32 465-511 16-47 (83)
310 1o9d_A 14-3-3-like protein C; 35.5 2.1E+02 0.0072 24.4 14.6 173 62-239 9-206 (260)
311 2cpt_A SKD1 protein, vacuolar 32.9 48 0.0017 24.2 3.9 30 60-89 17-46 (117)
312 1wfd_A Hypothetical protein 15 31.4 1.2E+02 0.0041 21.0 5.5 15 465-479 12-26 (93)
313 2cwy_A Hypothetical protein TT 30.9 71 0.0024 22.2 4.3 59 104-165 7-67 (94)
314 2npm_A 14-3-3 domain containin 30.6 2.5E+02 0.0087 23.9 14.6 173 62-239 29-226 (260)
315 3bu8_A Telomeric repeat-bindin 29.7 88 0.003 25.7 5.1 38 491-528 122-159 (235)
316 2qx5_A Nucleoporin NIC96; mRNA 29.4 4.4E+02 0.015 26.3 12.5 217 106-347 302-570 (661)
317 3dza_A Uncharacterized putativ 27.7 2E+02 0.007 23.1 6.8 74 51-126 98-178 (191)
318 2wvi_A Mitotic checkpoint seri 27.4 2.2E+02 0.0076 22.2 10.9 50 156-205 79-130 (164)
319 2cpt_A SKD1 protein, vacuolar 27.3 1.8E+02 0.0062 21.2 7.1 14 465-478 15-28 (117)
320 3myv_A SUSD superfamily protei 25.7 1.2E+02 0.0042 28.6 6.4 29 314-342 335-365 (454)
321 3lxu_X Tripeptidyl-peptidase 2 25.6 5.4E+02 0.018 28.3 11.5 36 292-328 1296-1331(1354)
322 3bu8_A Telomeric repeat-bindin 25.4 1.3E+02 0.0044 24.7 5.3 26 107-132 123-148 (235)
323 2v6x_A Vacuolar protein sortin 25.2 1.6E+02 0.0054 19.8 6.0 32 465-511 10-41 (85)
324 3mcx_A SUSD superfamily protei 24.8 1.4E+02 0.005 28.3 6.8 29 314-342 357-386 (477)
325 3kez_A Putative sugar binding 24.2 1.3E+02 0.0046 28.4 6.4 29 314-342 338-366 (461)
326 2e2a_A Protein (enzyme IIA); h 22.7 1E+02 0.0035 21.9 3.9 30 60-89 19-48 (105)
327 3snx_A SUSD homolog, putative 22.4 69 0.0024 30.4 4.0 50 463-512 165-220 (460)
328 1wcr_A PTS system, N, N'-diace 22.4 1.1E+02 0.0037 21.8 3.9 29 60-88 17-45 (103)
329 3bqo_A Telomeric repeat-bindin 22.3 1.7E+02 0.0059 23.7 5.4 31 105-135 124-154 (211)
330 3lew_A SUSD-like carbohydrate 21.9 1.6E+02 0.0054 28.2 6.4 27 314-341 347-373 (495)
331 2yhe_A SEC-alkyl sulfatase; hy 27.2 19 0.00067 36.0 0.0 52 61-115 461-512 (668)
332 3lew_A SUSD-like carbohydrate 21.2 1.2E+02 0.0042 29.0 5.5 32 481-512 201-232 (495)
333 3mcx_A SUSD superfamily protei 21.2 1.3E+02 0.0046 28.5 5.8 31 482-512 201-231 (477)
334 3ubw_A 14-3-3E, 14-3-3 protein 20.6 4E+02 0.014 22.7 17.4 25 142-167 37-61 (261)
335 2yhe_A SEC-alkyl sulfatase; hy 25.6 22 0.00074 35.7 0.0 49 484-532 462-510 (668)
336 3kez_A Putative sugar binding 20.2 1.2E+02 0.0041 28.7 5.2 32 481-512 194-225 (461)
337 3k1s_A PTS system, cellobiose- 20.2 1.2E+02 0.0043 21.7 3.9 29 60-88 21-49 (109)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.8e-44 Score=344.87 Aligned_cols=385 Identities=16% Similarity=0.202 Sum_probs=332.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (551)
..|..++..|++++|+..+.++++.+|+ ++.++..+|.++...|++++|+..++++++.+|.+ ..++..+|.+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~ 76 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNV 76 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHH
Confidence 4688899999999999999999999998 88999999999999999999999999999999988 4467779999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
+...| ++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+....+..++.++... |
T Consensus 77 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g 149 (388)
T 1w3b_A 77 YKERG-QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL------G 149 (388)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT------S
T ss_pred HHHCC-CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------c
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999777766 9
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .|++++|+..+++
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE-ARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999776 9999999999999
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhH
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITK 385 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (551)
++..+|+++.++..+|.++...|++++|+..|+++++..|+++..+..++...... +
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------------------g 285 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK-----------------------G 285 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH-----------------------S
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------------------C
Confidence 99999999999999999999999999999999999999999887655444331110 1
Q ss_pred HHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcCh
Q psy12713 386 NEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDF 465 (551)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
....++..+.+... ..|.+.. .+...+..+...|++
T Consensus 286 ~~~~A~~~~~~al~----------------------------------~~p~~~~----------~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 286 SVAEAEDCYNTALR----------------------------------LCPTHAD----------SLNNLANIKREQGNI 321 (388)
T ss_dssp CHHHHHHHHHHHHH----------------------------------HCTTCHH----------HHHHHHHHHHTTTCH
T ss_pred CHHHHHHHHHHHHh----------------------------------hCcccHH----------HHHHHHHHHHHcCCH
Confidence 11122222221100 0111111 112223336778999
Q ss_pred hHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713 466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA 532 (551)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 532 (551)
++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6e-39 Score=308.63 Aligned_cols=356 Identities=22% Similarity=0.250 Sum_probs=312.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
++..++..|..++..|++++|...++.++..+|. ++.++..+|.++...|++++|+..|++++..+|++ ..++
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~ 104 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGY 104 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHH
Confidence 4678889999999999999999999999999998 99999999999999999999999999999999988 4466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++...| ++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...
T Consensus 105 ~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~- 182 (388)
T 1w3b_A 105 INLAAALVAAG-DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ- 182 (388)
T ss_dssp HHHHHHHHHHS-CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 77999999999 9999999999999999999999999999999999999999999999999999999999999777776
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|
T Consensus 183 -----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 256 (388)
T 1w3b_A 183 -----GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLA 256 (388)
T ss_dssp -----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred -----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR 379 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (551)
+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|++...+..++....
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-------------------- 316 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-------------------- 316 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999998876654433210
Q ss_pred hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch-hhhch
Q psy12713 380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE-NESGQ 458 (551)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 458 (551)
..+....++..+.+. +...|. ....+ ..+..
T Consensus 317 ---~~g~~~~A~~~~~~a----------------------------------l~~~p~-----------~~~~~~~l~~~ 348 (388)
T 1w3b_A 317 ---EQGNIEEAVRLYRKA----------------------------------LEVFPE-----------FAAAHSNLASV 348 (388)
T ss_dssp ---TTTCHHHHHHHHHHH----------------------------------TTSCTT-----------CHHHHHHHHHH
T ss_pred ---HcCCHHHHHHHHHHH----------------------------------HhcCCC-----------cHHHHHHHHHH
Confidence 011122222222221 011111 11122 23333
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcC
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 498 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 498 (551)
+...|++++|+..|+++++.+|+++.+++.+|.++..+|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 7778999999999999999999999999999999998874
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=309.74 Aligned_cols=392 Identities=17% Similarity=0.205 Sum_probs=329.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++ ..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~ 76 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHH
Confidence 678899999999999999999999999999998 47899999999999999999999999999999988 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------------------------------------------
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV------------------------------------------------- 170 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------------------- 170 (551)
..+|.++...| ++++|+..|++++...|.+
T Consensus 77 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLG-KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 77999999999 9999999999999887633
Q ss_pred ------------------------------hhHHHHHHHHHHH---hCCHHHHHHHHHHHHh-----c--CC-------C
Q psy12713 171 ------------------------------ADSYYQRGQIYCL---FGQYEEALRNLDKTIA-----L--NP-------N 203 (551)
Q Consensus 171 ------------------------------~~~~~~la~~~~~---~~~~~~A~~~~~~~l~-----~--~~-------~ 203 (551)
+.++..+|.++.. .|++++|+..+++++. + .| .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 5667778887776 8999999999999999 6 44 4
Q ss_pred CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283 (551)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (551)
...++..+|.++... |++++|+..+++++...|. ..++..+|.++...|++++|+..+++++..+|.++.++.
T Consensus 236 ~~~~~~~~~~~~~~~------~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 308 (514)
T 2gw1_A 236 LAISLEHTGIFKFLK------NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308 (514)
T ss_dssp HHHHHHHHHHHHHHS------SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH
T ss_pred HHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH
Confidence 456777888777777 9999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHH
Q psy12713 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363 (551)
Q Consensus 284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (551)
.+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++..++..++.....
T Consensus 309 ~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 384 (514)
T 2gw1_A 309 HRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD--- 384 (514)
T ss_dssp HHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH---
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---
Confidence 99999887 99999999999999999999999999999999999999999999999999999887765544433111
Q ss_pred HHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713 364 MKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI 443 (551)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (551)
.+....++..+.+.... .|......
T Consensus 385 --------------------~~~~~~A~~~~~~a~~~----------------------------------~~~~~~~~- 409 (514)
T 2gw1_A 385 --------------------KNDFDKALKQYDLAIEL----------------------------------ENKLDGIY- 409 (514)
T ss_dssp --------------------TTCHHHHHHHHHHHHHH----------------------------------HHTSSSCS-
T ss_pred --------------------CCCHHHHHHHHHHHHHh----------------------------------hhccchHH-
Confidence 01112222222211100 00000000
Q ss_pred hhhhhhccchhhhchhhh---hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713 444 EESEKYGNLENESGQKHA---ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 520 (551)
.........+..+.. .|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++
T Consensus 410 ---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 410 ---VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp ---SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 000012233334667 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy12713 521 AQRHFVWTS 529 (551)
Q Consensus 521 ~~l~~~~~~ 529 (551)
..+......
T Consensus 487 ~~~~~~~~~ 495 (514)
T 2gw1_A 487 QAITFAEAA 495 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888666553
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.3e-36 Score=296.83 Aligned_cols=344 Identities=14% Similarity=0.151 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHH
Q psy12713 77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA 156 (551)
Q Consensus 77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A 156 (551)
...+...+.+++..+|. ++.+++.+|.++...|++++|+..|++++...|++ ..++..+|.++...| ++++|
T Consensus 8 ~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g-~~~~A 79 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMG-KSKAA 79 (450)
T ss_dssp ---------------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHH
T ss_pred cccccccccccccccHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCC-CHHHH
Confidence 34455666777777777 78888888888888888888888888888887776 445666888888888 88888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhhcC
Q psy12713 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH---VARAQR------------HFVVHKMIVP 221 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~------------~~~~~~~~~~ 221 (551)
+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++. ..+..+ +.++...
T Consensus 80 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 156 (450)
T 2y4t_A 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS--- 156 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 8888888888888888888888888888888888888888888888777 665544 4335554
Q ss_pred CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus 157 ---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~ 232 (450)
T 2y4t_A 157 ---GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LGDHELSLS 232 (450)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999777 999999999
Q ss_pred HHHHHHhcCcCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713 302 LIEKAISIDKSCMFAYETL------------GTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (551)
.+++++...|++...+..+ |.++...|++++|+..|++++...|+++......
T Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~--------------- 297 (450)
T 2y4t_A 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS--------------- 297 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH---------------
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH---------------
Confidence 9999999999998887766 9999999999999999999999999876532110
Q ss_pred hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY 449 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (551)
T Consensus 298 -------------------------------------------------------------------------------- 297 (450)
T 2y4t_A 298 -------------------------------------------------------------------------------- 297 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.+...
T Consensus 298 --~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 298 --KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp --HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 011122255568999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hhh
Q psy12713 530 TLA 532 (551)
Q Consensus 530 ~~~ 532 (551)
.++
T Consensus 376 ~~~ 378 (450)
T 2y4t_A 376 LKQ 378 (450)
T ss_dssp HHH
T ss_pred hhc
Confidence 544
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2e-36 Score=297.21 Aligned_cols=363 Identities=15% Similarity=0.160 Sum_probs=323.3
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
.+++..++..|..++..|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|+++++.+|++ ..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TA 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HH
Confidence 347899999999999999999999999999999998 89999999999999999999999999999999988 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hHHHHH------------HHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DSYYQR------------GQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
++..+|.++...| ++++|+..|++++..+|++. .++..+ |.++...|++++|+..+++++...|
T Consensus 96 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 96 ARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6777999999999 99999999999999999988 776655 6679999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 203 NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282 (551)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 282 (551)
.+..++..++.++... |++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++...+
T Consensus 175 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 175 WDAELRELRAECFIKE------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp TCHHHHHHHHHHHHHT------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CChHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 9999999999888888 9999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH------------HHHHHHhcCCHHHHHHHHHHHHhcCcCCHH----HHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 283 VHR------------AMLMLQARGNVDEAIKLIEKAISIDKSCMF----AYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 283 ~~l------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
..+ |.++.. .|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..+++++...|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 666 888777 99999999999999999999854 7889999999999999999999999999998
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhh
Q psy12713 347 EAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI 426 (551)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (551)
+..++..++.
T Consensus 328 ~~~~~~~l~~---------------------------------------------------------------------- 337 (450)
T 2y4t_A 328 NVNALKDRAE---------------------------------------------------------------------- 337 (450)
T ss_dssp CHHHHHHHHH----------------------------------------------------------------------
T ss_pred cHHHHHHHHH----------------------------------------------------------------------
Confidence 7765433321
Q ss_pred hccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhh------------HHH
Q psy12713 427 LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ------------IYC 494 (551)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~------------~~~ 494 (551)
.+...|++++|+..|+++++.+|+++.++..+|. .|.
T Consensus 338 -------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~ 386 (450)
T 2y4t_A 338 -------------------------------AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386 (450)
T ss_dssp -------------------------------HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG
T ss_pred -------------------------------HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH
Confidence 2445689999999999999999999999999994 455
Q ss_pred Hhc-----CHHHHHHHHHH-HhhcCCchHH----------HHHHHHHHHHHhhhhhhh
Q psy12713 495 LFG-----QYEEALRNLDK-TIALNPNFHV----------ARAQRHFVWTSTLAELMA 536 (551)
Q Consensus 495 ~~g-----~~~~A~~~~~~-al~~~p~~~~----------a~~~l~~~~~~~~~~~~a 536 (551)
.+| +.+++...|++ +++.+|++.. .+..++.+|..++|...+
T Consensus 387 ~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 556 66788999997 8999988632 455666667766665543
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=7e-36 Score=284.07 Aligned_cols=340 Identities=14% Similarity=0.155 Sum_probs=266.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++.++..|..++..|++++|+..|+++++.+|. ++.++..+|.++...|++++|+..++++++..|+++ .++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AAR 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHH
Confidence 4566667777777777777777777777777666 666777777777777777777777777776666653 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDP---NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
..+|.++...| ++++|+..++++++.+| +++.++..++.++... .+..++.++.
T Consensus 75 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~ 131 (359)
T 3ieg_A 75 LQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ----------------------RLRSQALDAF 131 (359)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
T ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH----------------------HHHHHHHHHH
Confidence 55677777777 77777777777777666 6666666665443211 1233455555
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (551)
.. |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.. .|++
T Consensus 132 ~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~ 204 (359)
T 3ieg_A 132 DG------ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LGDH 204 (359)
T ss_dssp HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-HTCH
T ss_pred Hc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence 55 8999999999999999999999999999999999999999999999999999999999999999777 8999
Q ss_pred HHHHHHHHHHHhcCcCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHH
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYE------------TLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 364 (551)
++|+..++++++..|+++.++. .+|.++...|++++|+..+++++...|+++......
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------- 274 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS---------- 274 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH----------
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH----------
Confidence 9999999999999998877654 448889999999999999999999999876532111
Q ss_pred HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhh
Q psy12713 365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE 444 (551)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (551)
T Consensus 275 -------------------------------------------------------------------------------- 274 (359)
T 3ieg_A 275 -------------------------------------------------------------------------------- 274 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713 445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 524 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 524 (551)
....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++
T Consensus 275 -------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 275 -------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred -------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0111222556699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy12713 525 FVWTSTLAE 533 (551)
Q Consensus 525 ~~~~~~~~~ 533 (551)
.+....++.
T Consensus 348 ~~~~~~~~~ 356 (359)
T 3ieg_A 348 KAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998876543
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-36 Score=309.84 Aligned_cols=353 Identities=14% Similarity=0.091 Sum_probs=320.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--------------------------------
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRAT-------------------------------- 106 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~-------------------------------- 106 (551)
.++..++..|..+...|++++|+..|+++++.+|. ...++..++.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 36889999999999999999999999999999998 6666665543
Q ss_pred ------HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713 107 ------VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI 180 (551)
Q Consensus 107 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 180 (551)
.|...|++++|+..|++++.. |.+ ..++..+|.++...| ++++|+..|++++..+|++..++..++.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKS----SDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC-Cch----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 444678999999999999887 444 456777999999999 99999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC
Q psy12713 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED 260 (551)
Q Consensus 181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 260 (551)
+...|++++|+..+++++...|++...+..++.++... |++++|+..|+++++..|.+..++..+|.++...|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV------NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999888888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 261 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
+++|+..|+++++..|++..++..++.++.. .|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999777 999999999999999999999999999999999999999999999999
Q ss_pred ccccc------CH-HHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccc
Q psy12713 341 LPLAR------DE-AELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVV 413 (551)
Q Consensus 341 ~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 413 (551)
++..| ++ ..+
T Consensus 502 ~~~~~~~~~~p~~~~~~--------------------------------------------------------------- 518 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAAT--------------------------------------------------------------- 518 (597)
T ss_dssp HHHHHHSCCCSGGGHHH---------------------------------------------------------------
T ss_pred HHhhhccccchhhHHHH---------------------------------------------------------------
Confidence 88743 21 111
Q ss_pred cCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHH
Q psy12713 414 MDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 493 (551)
+...+..+...|++++|+..++++++.+|+++.++..+|.+|
T Consensus 519 --------------------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 519 --------------------------------------WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp --------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 112222366679999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999998874
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.3e-37 Score=311.22 Aligned_cols=393 Identities=16% Similarity=0.175 Sum_probs=311.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++..|..++..|++++|+..|++++..+|+ ++.++..+|.++..+|++++|+..++++++.+|+++ .++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~ 96 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----KAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----HHH
Confidence 5788999999999999999999999999999998 899999999999999999999999999999999984 466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH----------------------------------------------
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADS---------------------------------------------- 173 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------------------------------------- 173 (551)
+.+|.++...| ++++|+..|+ ++..+|+....
T Consensus 97 ~~la~~~~~~g-~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 97 LRRASANESLG-NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHcC-CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 77999999999 9999999995 77666654332
Q ss_pred ----------------------HHHH--------HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCC
Q psy12713 174 ----------------------YYQR--------GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPG 222 (551)
Q Consensus 174 ----------------------~~~l--------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (551)
...+ +......|++++|+..++++++.+|++...+..++.++... ..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 1111 22223346899999999999999999977655555444333 3444
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
..|++++|+..+++++..+|+ +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 449999999999999999999 99999999999999999999999999999999999999999999877 9999999999
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhh
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQN 382 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (551)
++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..++...... .....
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~ 396 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR----------------GDFDT 396 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT----------------TCHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----------------CCHHH
Confidence 99999999999999999999999999999999999999999999887766554331110 11111
Q ss_pred hhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhh
Q psy12713 383 ITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAA 462 (551)
Q Consensus 383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
.......++...+.... .. ...+.+...+..+...
T Consensus 397 A~~~~~~a~~~~~~~~~-----------------------------------------~~----~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEK-----------------------------------------IH----VGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHHHHHHHHHHHCSS-----------------------------------------CS----STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchh-----------------------------------------hH----HHHHHHHHHHHHHHHH
Confidence 11222222222111100 00 0011122233446666
Q ss_pred ----------cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713 463 ----------SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 524 (551)
Q Consensus 463 ----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 524 (551)
|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++........
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988765443
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-36 Score=306.48 Aligned_cols=401 Identities=16% Similarity=0.110 Sum_probs=330.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----------
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT----------- 128 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------- 128 (551)
+...++..|..+...|++++|+..|++++...+ ++.++..+|.+|...|++++|+..|++.....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR----SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT----CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhcccc----chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 446788899999999999999999999877644 67899999999999999999999999643322
Q ss_pred -CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH-----------------------------
Q psy12713 129 -SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG----------------------------- 178 (551)
Q Consensus 129 -~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la----------------------------- 178 (551)
.........++..+|.+|...| ++++|+..|+++++.+|++..++..++
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 0011122557788999999999 999999999999999999988877664
Q ss_pred ---------HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713 179 ---------QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT 249 (551)
Q Consensus 179 ---------~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 249 (551)
..|...|++++|+..|+++++. |.+...+..++.++... |++++|+..|++++...|.+..++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR------SRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHcCcccHHHHH
Confidence 3455889999999999999887 77889999999888887 9999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713 250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (551)
.++.++...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+|+++++.+|.+..+|..+|.++...|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999777 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713 330 LEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG 409 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (551)
+++|++.|++++...|++...+..++...... +....++..+.+...
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------g~~~~A~~~~~~~~~---------- 469 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL-----------------------GNILLANEYLQSSYA---------- 469 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH-----------------------TCHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHH----------
Confidence 99999999999999998877665554331111 111222222222100
Q ss_pred CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhcc------CCCc-
Q psy12713 410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKV------DPNV- 482 (551)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~- 482 (551)
..|.++. .....+..+...|++++|+..|+++++. +|++
T Consensus 470 ------------------------~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 470 ------------------------LFQYDPL----------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp ------------------------HCCCCHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred ------------------------hCCCChH----------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 0111111 1122333377789999999999999988 6664
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE 540 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~ 540 (551)
..+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|+..+|....
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999988877543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.3e-34 Score=275.32 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=258.7
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC---CCchhH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS---VDPKIK 135 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 135 (551)
.++..++..|.++...|++++|+..|+++++..|. ...++..+|.++...|++++|+..++++++..| +++...
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 111 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence 47889999999999999999999999999999998 889999999999999999999999999999998 664433
Q ss_pred HHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 136 VNA--------HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 136 ~~~--------~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
... +..+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+...
T Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 190 (359)
T 3ieg_A 112 SQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 221 122278999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT------------LFAQVLVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~ 275 (551)
+..+|.++... |++++|+..++++++..|++..++. .+|.++...|++++|+..+++++...
T Consensus 191 ~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 191 FYKISTLYYQL------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999888888 9999999999999999999987654 34888999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 276 PENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 276 ~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
|+++. ++..+|.++.. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++
T Consensus 265 ~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSK-DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 99874 45678888777 99999999999999999999999999999999999999999999999999999988766
Q ss_pred HHHh
Q psy12713 352 HIYS 355 (551)
Q Consensus 352 ~~~~ 355 (551)
..+.
T Consensus 344 ~~l~ 347 (359)
T 3ieg_A 344 EGLE 347 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.9e-36 Score=294.52 Aligned_cols=386 Identities=12% Similarity=0.037 Sum_probs=280.5
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc---------CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES---------TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV 130 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 130 (551)
.+..+..+|.++...|++++|+..|+++++. +|. ...++..+|.+|..+|++++|+.++++++++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~---~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR---SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT---THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 4566778999999999999999999999876 344 7788999999999999999999999999886332
Q ss_pred -----CchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcC
Q psy12713 131 -----DPKIKVNAHIKRAVVHLHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALN 201 (551)
Q Consensus 131 -----~~~~~~~~~~~la~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~ 201 (551)
.+. ...++..+|.++...| +++++|+.+|+++++++|+++.++..+|.++.. .++.++|+..++++++++
T Consensus 127 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 111 2445666777766543 179999999999999999999999999988655 467789999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (551)
|++..++..++..+. .++...|++++|+..+++++..+|..+.++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 206 p~~~~~~~~l~~~~~--~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLH--KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHH--HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CcchHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 999999988886655 456667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 282 YVHRAMLMLQA------------------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 282 ~~~l~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+..+|.+|... .+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999886431 234678999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHH
Q psy12713 344 ARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKM 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (551)
.|++......+..... ... .-.+....++..+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~Ai~~y~kal------------------------- 399 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGN------FQL-------------YQMKCEDKAIHHFIEGV------------------------- 399 (472)
T ss_dssp CCCHHHHHHHHHHHHH------HHH-------------HTSSCHHHHHHHHHHHH-------------------------
T ss_pred CCCChHHHHHHHHHHH------HHH-------------HHCCCHHHHHHHHHHHH-------------------------
Confidence 8887654322211100 000 00011112222222110
Q ss_pred HhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHH
Q psy12713 424 TSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503 (551)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 503 (551)
...|.. ....+....+...++++++.+|+++.++..+|.+|..+|++++|+
T Consensus 400 ---------~i~~~~--------------------~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 400 ---------KINQKS--------------------REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp ---------HSCCCC--------------------HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred ---------hcCccc--------------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 000100 001123455667788888999999999999999999999999999
Q ss_pred HHHHHHhhcCCchHHHHHHHH
Q psy12713 504 RNLDKTIALNPNFHVARAQRH 524 (551)
Q Consensus 504 ~~~~~al~~~p~~~~a~~~l~ 524 (551)
++|++|+++.|.+|.+...+|
T Consensus 451 ~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------------
T ss_pred HHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999888776
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=6.7e-35 Score=293.29 Aligned_cols=394 Identities=15% Similarity=0.135 Sum_probs=285.9
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH--
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN-- 137 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 137 (551)
++..++..|.++...|++++|+..|++++..+|+ ++.++..+|.++...|++++|+..|+ ++...|+.......
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPM 133 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHH
Confidence 5789999999999999999999999999999998 99999999999999999999999995 77766654332110
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q psy12713 138 --------------------------------------------------------------AHIKR--------AVVHL 147 (551)
Q Consensus 138 --------------------------------------------------------------~~~~l--------a~~~~ 147 (551)
....+ +....
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHH
Confidence 00111 22333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVAD-------SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (551)
..| ++++|+..++++++.+|+++. ++..+|.++...|++++|+..+++++..+|+ ...+..+| .+
T Consensus 214 a~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~------~~ 285 (537)
T 3fp2_A 214 AND-LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLA------LT 285 (537)
T ss_dssp HHH-HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH------HH
T ss_pred HHH-HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHH------HH
Confidence 446 899999999999999999855 5778889999999999999999999999999 88888888 44
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence 55559999999999999999999999999999999999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcch
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRS 380 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (551)
..++++++..|+++.++..+|.++...|++++|+..|+++++..|++...+..+... .....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~a~--------------- 426 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL---IGKAT--------------- 426 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH---HHHHH---------------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH---HHHHH---------------
Confidence 999999999999999999999999999999999999999999887654432111100 00000
Q ss_pred hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-h
Q psy12713 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-K 459 (551)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 459 (551)
........ ....++.+++..+... ....+...+.....+...+. +
T Consensus 427 ---------~~~~~~~~------------~~~~~~~~~~~~A~~~-------------~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 427 ---------ILARQSSQ------------DPTQLDEEKFNAAIKL-------------LTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp ---------HHHHHHTC----------------CCHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------HHHHHhhc------------cchhhhHhHHHHHHHH-------------HHHHHHhCCCCHHHHHHHHHHH
Confidence 00000000 0000111222222221 22345555555555555555 8
Q ss_pred hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy12713 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 527 (551)
...|++++|+..|+++++++|+..+...... +.++... .+.+..+|....-...+...+
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 531 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILARTMDEKLQATT--------FAEAAKI-QKRLRADPIISAKMELTLARY 531 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CHHHHHHHH--------HHHHHHH-HHHHHTC--------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHh--------HHHHHHH-HHhccccHHHHHHHhhHHHHH
Confidence 8899999999999999999999887644222 3333333 333455666544444433333
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=289.57 Aligned_cols=365 Identities=15% Similarity=0.099 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.++..+|.+++..|++++|+..|++++..+|+ ..++..+|.++...| ++++|+..++++++.+|+++.++..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 78 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHH
Confidence 6789999999999999999999999999999983 457788999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------------------------------------
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNF---------------------------------------------------- 204 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------------------------------------------- 204 (551)
+|.++...|++++|+..|++++...|.+
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999999988743
Q ss_pred ---------------------------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH-----h--C-------CC
Q psy12713 205 ---------------------------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD-----T--H-------SN 243 (551)
Q Consensus 205 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~--~-------~~ 243 (551)
...+...+.+.+ .+...|++++|+..+++++. . . |.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL---YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH---SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH---HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 233333333221 23346999999999999999 5 3 44
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 323 (551)
++.++..+|.++...|++++|+..+++++..+|+ ..++..+|.++.. .|++++|+..+++++..+|.++.++..+|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT-SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH-CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999 9999999999777 9999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhcc
Q psy12713 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIR 403 (551)
Q Consensus 324 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (551)
+...|++++|+..|++++...|++...+..++.. .... +....++..+.+...
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~-------~~~~~A~~~~~~~~~---- 366 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACL----------------AYRE-------NKFDDCETLFSEAKR---- 366 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH----------------TTTT-------TCHHHHHHHHHHHHH----
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH----------------HHHc-------CCHHHHHHHHHHHHH----
Confidence 9999999999999999999999977655444322 0001 111222222221100
Q ss_pred ccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch-hhhchhhhhcChhHHHHhhHHhhccCCCc
Q psy12713 404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE-NESGQKHAASDFTKAFADLDEAEKVDPNV 482 (551)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (551)
..| .....+ ..+..+...|++++|+..++++++..|++
T Consensus 367 ------------------------------~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 367 ------------------------------KFP-----------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp ------------------------------HST-----------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred ------------------------------Hcc-----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 011 111122 23334777899999999999999999887
Q ss_pred hH------HHhhhhhHHHH---hcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713 483 AD------SYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE 540 (551)
Q Consensus 483 ~~------~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~ 540 (551)
+. +++.+|.++.. .|++++|+..|+++++++|+++.++..+|.++...|+..+|....
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55 99999999999 999999999999999999999999999999999999988876543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=259.27 Aligned_cols=305 Identities=15% Similarity=0.126 Sum_probs=253.9
Q ss_pred HHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
..+...|+++... ..+|..+...| ++++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|
T Consensus 13 ~~~~~~~~~~~~~----~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 87 (330)
T 3hym_B 13 ESVDGLQENLDVV----VSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87 (330)
T ss_dssp -------CCCTTH----HHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhchhhHHHH----HHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 3344445555433 44888888888 888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 203 NFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281 (551)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (551)
.+..++..+|.++... | ++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++...
T Consensus 88 ~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 161 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMV------GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161 (330)
T ss_dssp TSTHHHHHHHHHHHHS------CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHH
T ss_pred CCHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHH
Confidence 8888888888777777 8 88888888988888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH
Q psy12713 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361 (551)
Q Consensus 282 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (551)
+..+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.....
T Consensus 162 ~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------- 229 (330)
T 3hym_B 162 MLYIGLEYGL-TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE----------- 229 (330)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-----------
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-----------
Confidence 9999999777 9999999999999999999999999999999999999999999999998876432110
Q ss_pred HHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcch
Q psy12713 362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTK 441 (551)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (551)
...
T Consensus 230 -----------------------------------------------------------------------~~~------ 232 (330)
T 3hym_B 230 -----------------------------------------------------------------------VTV------ 232 (330)
T ss_dssp -----------------------------------------------------------------------CTT------
T ss_pred -----------------------------------------------------------------------ccc------
Confidence 000
Q ss_pred hhhhhhhhcc-chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713 442 TIEESEKYGN-LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520 (551)
Q Consensus 442 ~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 520 (551)
+.... ....+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus 233 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 233 -----DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp -----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred -----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 00011 112233366779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hhh
Q psy12713 521 AQRHFVWTS-TLA 532 (551)
Q Consensus 521 ~~l~~~~~~-~~~ 532 (551)
..++.++.. .|+
T Consensus 308 ~~l~~~~~~~~g~ 320 (330)
T 3hym_B 308 TMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCc
Confidence 999999854 443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=254.26 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
++..+..+|..++..|++++|+..+++++..+|.+.... ..++.++...| ++++|+..+++++..+|+++.++..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL----PVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTH----HHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH----HHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 445566666666666666666666666666666654432 33566666666 6666666666666666666666666
Q ss_pred HHHHHHHhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 177 RGQIYCLFG-QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 177 la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
+|.++...| ++++|+..+++++..+|.+..++..+|.++... |++++|+..+++++...|++..++..+|.++
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 666666666 666666666666666666666666666666555 6666666666666666666666666666666
Q ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------cCCHHHHHHHHHHHHH
Q psy12713 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID---------KSCMFAYETLGTIEVQ 326 (551)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~ 326 (551)
...|++++|+..++++++.+|+++.++..+|.++.. .|++++|+..++++++.. |..+.++..+|.++..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666555 666666666666666654 4445666666666666
Q ss_pred hCCHHHHHHHHHHhcccccCHHH
Q psy12713 327 RGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.|++++|+.+++++++..|++..
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSH
T ss_pred hcCHHHHHHHHHHHHhhCccchH
Confidence 66666666666666666665444
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=6.1e-33 Score=264.82 Aligned_cols=265 Identities=12% Similarity=0.094 Sum_probs=189.8
Q ss_pred HHHhhhcHHHHHH-HHHHHhhcCCCchh-HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713 70 RAFEHEDYLTAIR-HCTEEIESTSSNHT-KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147 (551)
Q Consensus 70 ~~~~~g~~~~A~~-~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 147 (551)
++...|+|++|+. .|++++...|.++. ....++.+|.++...|++++|+..|+++++..|.++ .++..+|.++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~ 109 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQA 109 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence 5566778888887 88877777776311 245677788888888888888888888888877763 45566888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------H
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ----------------R 211 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------~ 211 (551)
..| ++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+.. +
T Consensus 110 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 110 ENE-QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred HCc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 888 88888888888888888888888888888888888888888888888888877665542 3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289 (551)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (551)
+.++ .. |++++|+..+++++...|. ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 189 ~~~~-~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 189 GSLL-SD------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp HHHH-HH------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHh-hc------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 3322 43 7777777777777777777 6777777777777777777777777777777777777777777776
Q ss_pred HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
.. .|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++.+.|++
T Consensus 262 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 262 AN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 66 7777777777777777777777777777777777777777777777777766653
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=258.01 Aligned_cols=226 Identities=15% Similarity=0.125 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC------CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTS------VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--- 167 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--- 167 (551)
.+..+..+|.++..+|++++|++.|++++++.+ .++. ...++.++|.+|..+| ++++|+.++++++.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhc
Confidence 467788999999999999999999999988622 1222 2457888999999999 9999999999998763
Q ss_pred -----CCChhHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713 168 -----PNVADSYYQRGQIYCLF--GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240 (551)
Q Consensus 168 -----~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 240 (551)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+.+.. ...++.++|+..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL---DNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---HHSCCCCCTHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhc
Confidence 34577888888777665 4799999999999999999999999988876654 1124557899999999999
Q ss_pred CCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713 241 HSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 316 (551)
+|+++.++..+|..+.. .|++++|+..+++++..+|+.+.++..+|.++.. .|++++|+..++++++.+|+++.+
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHH
Confidence 99999999888877654 4678899999999999999999999999999777 999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q psy12713 317 YETLGTIEVQRG 328 (551)
Q Consensus 317 ~~~l~~~~~~~g 328 (551)
+..+|.+|...+
T Consensus 284 ~~~lg~~y~~~~ 295 (472)
T 4g1t_A 284 HCQIGCCYRAKV 295 (472)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.9e-31 Score=254.40 Aligned_cols=281 Identities=15% Similarity=0.137 Sum_probs=198.2
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 148 HAASDFTKAFA-DLDEAEKVDPNVA----DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 148 ~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
..| ++++|+. .+++++...|+++ ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...
T Consensus 37 ~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---- 111 (368)
T 1fch_A 37 WLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN---- 111 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT----
T ss_pred HHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 344 5555555 5555555554442 34555555555555555555555555555555555555555555554
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH----------------HHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV----------------HRA 286 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~ 286 (551)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|++...+. .++
T Consensus 112 --g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 112 --EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred --cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 55555555555555555555566666666666666666666666666666665554443 455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHH
Q psy12713 287 MLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364 (551)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 364 (551)
.+ +. .|++++|+..++++++..|. ++.++..+|.++...|++++|+..|++++...|++..++..++
T Consensus 190 ~~-~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~--------- 258 (368)
T 1fch_A 190 SL-LS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG--------- 258 (368)
T ss_dssp HH-HH-HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------
T ss_pred HH-hh-cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH---------
Confidence 55 44 89999999999999999998 7889999999999999999999999999988888765433222
Q ss_pred HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhh
Q psy12713 365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIE 444 (551)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (551)
T Consensus 259 -------------------------------------------------------------------------------- 258 (368)
T 1fch_A 259 -------------------------------------------------------------------------------- 258 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch--------
Q psy12713 445 ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF-------- 516 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------- 516 (551)
..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 259 ------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 259 ------------ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred ------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 114455889999999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHHHhhhhhhhhh
Q psy12713 517 ---HVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 517 ---~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
..++..+|.++...|+..+|..
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHH
Confidence 8999999999999998776653
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.98 E-value=1.9e-30 Score=247.19 Aligned_cols=272 Identities=12% Similarity=0.050 Sum_probs=245.0
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
..++..++..|..++..|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|+++++.+|++ ..
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 134 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LK 134 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HH
Confidence 345677999999999999999999999999999998 89999999999999999999999999999999988 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH----------HHHHHHhCCHHHHHHHHHHHHhcCCC--CH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR----------GQIYCLFGQYEEALRNLDKTIALNPN--FH 205 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~l~~~~~--~~ 205 (551)
++..+|.++...| ++++|+..+++++...|++...+..+ |.++...|++++|+..+++++...|. ++
T Consensus 135 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 135 ALMALAVSYTNTS-HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 6777999999999 99999999999999999877766655 99999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 285 (551)
..+..+|.++... |++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 214 ~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 214 DLQTGLGVLFHLS------GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp HHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 9999999888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 286 AMLMLQARGNVDEAIKLIEKAISIDKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 286 ~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
|.++.. .|++++|+.+|+++++..|+ +..+|..++.++...|+.+.+....++.+...
T Consensus 288 ~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 288 GISCIN-LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 999777 99999999999999999877 36789999999999999999999888766543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=8.1e-31 Score=249.70 Aligned_cols=260 Identities=17% Similarity=0.174 Sum_probs=191.5
Q ss_pred HHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 82 RHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL 160 (551)
Q Consensus 82 ~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~ 160 (551)
..+.+.+...+.+ +.....++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...| ++++|+..|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~ 122 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENE-NEQAAIVAL 122 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 4445555555552 1234558888888888888888888888888888877 445666888888888 888888888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHh-hcCCChhHHHHHHHHHHH
Q psy12713 161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR---HFVVHKM-IVPGDRERVEQSLKEFRN 236 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~A~~~~~~ 236 (551)
++++..+|+++.++..+|.++...|++++|+..++++++..|++...+..+ +.++... ..+...|++++|+..+++
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887776666555 1111111 455566888888888888
Q ss_pred HHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713 237 FVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314 (551)
Q Consensus 237 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 314 (551)
++...|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCch
Confidence 8888888 778888888888888888888888888888888888888888888666 8888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
.++..+|.++...|++++|+.+|++++++.|+.
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888888888888777664
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=3e-30 Score=241.78 Aligned_cols=276 Identities=13% Similarity=0.092 Sum_probs=255.9
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
...+..++.+|..++..|++++|+..|+++++..|. +..++..+|.++...|++++|+..++++++..|.+. .
T Consensus 18 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~ 90 (327)
T 3cv0_A 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----A 90 (327)
T ss_dssp GGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred hhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----H
Confidence 346678999999999999999999999999999998 899999999999999999999999999999999884 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR--------------GQ-IYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
++..+|.++...| ++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++..|
T Consensus 91 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 91 VHAALAVSHTNEH-NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 6677999999999 99999999999999999998888777 76 78899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 203 NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282 (551)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 282 (551)
.+...+..++.++... |++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|+++.++
T Consensus 170 ~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLS------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999999999888888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
..+|.++.. .|++++|+..+++++...|. ++.++..+|.++...|++++|...+++++...|++.
T Consensus 244 ~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 244 YNMAVSYSN-MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999887 99999999999999999999 789999999999999999999999999998877643
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=6.5e-30 Score=240.55 Aligned_cols=257 Identities=11% Similarity=0.040 Sum_probs=170.7
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHHHHhCCC
Q psy12713 165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER-VEQSLKEFRNFVDTHSN 243 (551)
Q Consensus 165 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~ 243 (551)
..+|++..++..+|.++...|++++|+..+++++.++|++..+|..+|.++... |+ +++|+..|++++..+|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~------g~d~~eAl~~~~~al~l~P~ 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL------QKDLHEEMNYITAIIEEQPK 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHCTT
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------ccCHHHHHHHHHHHHHHCCC
Confidence 344444555555555555555555555555555555555555555555555444 54 55555555555555566
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 323 (551)
+..+|+.+|.++...|++++|+..|+++++++|++..+|.++|.++.. .|++++|+.+++++++++|++..+|..+|.+
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666444 6666666666666666666666666666666
Q ss_pred HHH-hCCHHHH-----HHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhc
Q psy12713 324 EVQ-RGRLEEA-----VKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN 397 (551)
Q Consensus 324 ~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (551)
+.. .|..++| +.+|++++.++|++..++..++..
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l---------------------------------------- 283 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI---------------------------------------- 283 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH----------------------------------------
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------------------------------------
Confidence 666 3443555 466777777777766554433211
Q ss_pred hhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhh--cChhHHHHhhHHh
Q psy12713 398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAA--SDFTKAFADLDEA 475 (551)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a 475 (551)
+... +++++|+..++++
T Consensus 284 -------------------------------------------------------------l~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 284 -------------------------------------------------------------LQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp -------------------------------------------------------------HTTTCGGGCHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHccCccchHHHHHHHHHh
Confidence 0111 2578888888888
Q ss_pred hccCCCchHHHhhhhhHHHHhc--------C-HHHHHHHHHHH-hhcCCchHHHHHHHHHHHHHh
Q psy12713 476 EKVDPNVADSYYQRGQIYCLFG--------Q-YEEALRNLDKT-IALNPNFHVARAQRHFVWTST 530 (551)
Q Consensus 476 l~~~p~~~~~~~~lg~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~~ 530 (551)
+.+|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+...
T Consensus 303 -~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 303 -QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp -TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred -ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 899999999999999999985 3 59999999999 999999999999999988864
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.7e-29 Score=237.73 Aligned_cols=254 Identities=12% Similarity=0.060 Sum_probs=233.1
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q psy12713 87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD-FTKAFADLDEAEK 165 (551)
Q Consensus 87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~~A~~~~~~~~~ 165 (551)
++..+|+ ...++..+|.++...|++++|+..+++++.++|++ ..+|+.+|.++...| + +++|+..|++++.
T Consensus 89 ai~~~p~---~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g-~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 89 QIIYSDK---FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQ-KDLHEEMNYITAIIE 160 (382)
T ss_dssp EECCCHH---HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred hhhCChh---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcc-cCHHHHHHHHHHHHH
Confidence 4556666 89999999999999999999999999999999998 557777999999999 8 9999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV 245 (551)
Q Consensus 166 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 245 (551)
++|++..+|+.+|.++..+|++++|+..|++++.++|++..+|..+|.++... |++++|+..++++++.+|++.
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999998888 999999999999999999999
Q ss_pred HHHHHHHHHHHh-ccCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCcCCHHHH
Q psy12713 246 EACTLFAQVLVD-QEDFDGA-----EEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKLIEKAISIDKSCMFAY 317 (551)
Q Consensus 246 ~~~~~la~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 317 (551)
.+|+.+|.++.. .|..++| +..|++++.++|++..+|.+++.++.. .| ++++|++.+.++ +.+|+++.++
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-cCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 999999999999 5665888 599999999999999999999999665 77 689999999998 8999999999
Q ss_pred HHHHHHHHHhC--------C-HHHHHHHHHHh-cccccCHHHHHHHHhH
Q psy12713 318 ETLGTIEVQRG--------R-LEEAVKCFNKA-LPLARDEAELSHIYSL 356 (551)
Q Consensus 318 ~~l~~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~~ 356 (551)
..+|.++..+| + +++|+.+|+++ ++++|.....|..+..
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 99999999985 3 59999999999 9999999887766543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.3e-29 Score=237.36 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175 (551)
Q Consensus 96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 175 (551)
.....++.+|.++...|++++|+..++++++..|++ ..++..+|.++...| ++++|+..+++++..+|+++.++.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHH
Confidence 455778899999999999999999999999999887 446667999999999 999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HH--hh-cCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV------HK--MI-VPGDRERVEQSLKEFRNFVDTHSNVVE 246 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~------~~--~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~ 246 (551)
.+|.++...|++++|+..+++++...|.+...+..+.... .. .. ++...|++++|+..+++++...|.++.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 173 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH
Confidence 9999999999999999999999999998877766551110 00 02 466778999999999999998888888
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
++..+|.++...|++++|+..++++++.+|+++.++..+|.++.. .|++++|+..++++++..|+++.++..+|.++..
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999998888888888888888777 8899999999999988888888888888888888
Q ss_pred hCCHHHHHHHHHHhcccccC
Q psy12713 327 RGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~ 346 (551)
.|++++|+..+++++...|+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCc
Confidence 88888888888888877665
No 25
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=2e-28 Score=222.89 Aligned_cols=257 Identities=14% Similarity=0.062 Sum_probs=221.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++.++..|..++..|++++|+..|+++++.+|. +..++..+|.++...|++++|+..+++++. .|.++.....++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence 3567899999999999999999999999999998 888999999999999999999999999999 566666666778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|...+..
T Consensus 78 ~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~- 155 (272)
T 3u4t_A 78 EYYGKILMKKG-QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN- 155 (272)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999444544
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVD---PEN-----ASLYVHRAML 288 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~ 288 (551)
+++++|+..++++++.+|+++.++..+|.++...|+ +++|+..++++++.. |+. ..++..+|.+
T Consensus 156 -----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 156 -----KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp -----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999888 888999999988875 432 2577788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
+.. .|++++|+.+++++++.+|+++.++..++.+....+
T Consensus 231 ~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 231 YTI-NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHH-cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 776 888888888888888888888888888777665443
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=3.9e-26 Score=225.83 Aligned_cols=382 Identities=13% Similarity=0.053 Sum_probs=305.2
Q ss_pred CcchHHHHHHHHHHHh----hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCC
Q psy12713 58 ESHELDLLSKAKRAFE----HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTS 129 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~ 129 (551)
..++.+++..|..+.. .+++++|+.+|+++.+. . ++.+++.+|.+|.. .+++++|+..|+++.+..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 3478999999999998 89999999999999986 3 67899999999999 999999999999998753
Q ss_pred CCchhHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Q psy12713 130 VDPKIKVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALN 201 (551)
Q Consensus 130 ~~~~~~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 201 (551)
+ ..+++.+|.+|.. .+ ++++|+.+|+++... +++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 110 -~----~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~- 180 (490)
T 2xm6_A 110 -L----PQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ- 180 (490)
T ss_dssp -C----HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred -C----HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 3 4577789999999 88 999999999999875 578999999999998 88999999999999986
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCC
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~ 277 (551)
.++.++..+|.++... ....+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.+|+++++. .
T Consensus 181 -~~~~a~~~Lg~~y~~g--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 253 (490)
T 2xm6_A 181 -GNVWSCNQLGYMYSRG--LGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--G 253 (490)
T ss_dssp -TCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--T
T ss_pred -CCHHHHHHHHHHHhcC--CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 5789999999888762 12249999999999999875 568899999999997 89999999999999875 5
Q ss_pred CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhcccccCHHH
Q psy12713 278 NASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR-----GRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 278 ~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
++.+++.+|.++... .+++++|+.+|+++.+. .++.++..+|.++... +++++|+.+|+++.+..+. .
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--T 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--H
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--H
Confidence 688999999985531 68999999999999865 5788999999999998 9999999999999886443 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhcc
Q psy12713 350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS 429 (551)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (551)
....++..... . ....+...++..+.+..+.
T Consensus 330 a~~~lg~~y~~------------~--------g~~~~~~~A~~~~~~a~~~----------------------------- 360 (490)
T 2xm6_A 330 AQANLGAIYFR------------L--------GSEEEHKKAVEWFRKAAAK----------------------------- 360 (490)
T ss_dssp HHHHHHHHHHH------------S--------CCHHHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHh------------C--------CCcccHHHHHHHHHHHHHC-----------------------------
Confidence 32222221000 0 0011233333333331110
Q ss_pred CCccccCCCcchhhhhhhhhccchhhhchhhh----hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHH
Q psy12713 430 NDYEIIPGDPTKTIEESEKYGNLENESGQKHA----ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEE 501 (551)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~ 501 (551)
+++. ..+..+..+.. .+++++|+.+|+++++. +++.+++++|.+|.. .+++++
T Consensus 361 -------~~~~----------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 361 -------GEKA----------AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp -------TCHH----------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred -------CCHH----------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 0000 11122222444 58999999999999986 469999999999999 899999
Q ss_pred HHHHHHHHhhcC---CchHHHHHHHHHHHHHhhhh
Q psy12713 502 ALRNLDKTIALN---PNFHVARAQRHFVWTSTLAE 533 (551)
Q Consensus 502 A~~~~~~al~~~---p~~~~a~~~l~~~~~~~~~~ 533 (551)
|+.+|+++++.+ |+++.+..+++.++....+.
T Consensus 422 A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~ 456 (490)
T 2xm6_A 422 AWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQ 456 (490)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHH
Confidence 999999999999 55999999999887764443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=3.3e-26 Score=228.74 Aligned_cols=398 Identities=10% Similarity=0.001 Sum_probs=284.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
++..|+..+.. ...|++++|...|+++++..|. +..+|..+|..+...|++++|...|++++...| +.. .|
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~----lw 82 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID----LW 82 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH----HH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH----HH
Confidence 67888888874 7889999999999999999999 999999999999999999999999999999998 433 44
Q ss_pred HHHHHH-HHHhcCCHHHHHH----HHHHHHhc---CCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCC
Q psy12713 140 IKRAVV-HLHAASDFTKAFA----DLDEAEKV---DPNVADSYYQRGQIYCL---------FGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 140 ~~la~~-~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~~~ 202 (551)
...+.. ....| +++.|.+ .|++++.. +|++..+|...+..... .|+++.|...|+++++ .|
T Consensus 83 ~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P 160 (530)
T 2ooe_A 83 KCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NP 160 (530)
T ss_dssp HHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-ch
Confidence 556643 34556 7777665 77777754 56778889888887765 7899999999999999 56
Q ss_pred CCHH--HHHHHHHHH-------HHhhcCCChhHHHHHHHHHHH------HHHh-----CCCc-------HHHHHHHHHHH
Q psy12713 203 NFHV--ARAQRHFVV-------HKMIVPGDRERVEQSLKEFRN------FVDT-----HSNV-------VEACTLFAQVL 255 (551)
Q Consensus 203 ~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~------~~~~-----~~~~-------~~~~~~la~~~ 255 (551)
.... .|....... ....+....+++..|...+.. .++. .|.. ...|.......
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 5432 222111110 000111345788888877765 3332 2322 23444443332
Q ss_pred Hhc----cCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------hcCCHH-------HHHHHHHHHHh-cCcCC
Q psy12713 256 VDQ----EDF----DGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVD-------EAIKLIEKAIS-IDKSC 313 (551)
Q Consensus 256 ~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~-------~A~~~~~~~~~-~~~~~ 313 (551)
... ++. ..++..|++++..+|.++.+|..+|..+.. ..|+++ +|+..|+++++ ..|++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 221 232 478889999999999999999999988654 158876 89999999997 78999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH-HHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHH
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA-ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIK 392 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 392 (551)
..+|..+|.++...|++++|...|+++++..|.++ .++..++..... .+....+..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----------------------~~~~~~A~~ 377 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-----------------------AEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-----------------------hcCHHHHHH
Confidence 99999999999999999999999999999998875 455544432111 111222333
Q ss_pred HHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHh
Q psy12713 393 QLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFAD 471 (551)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~ 471 (551)
.+.+... ..+..... ....+.. +...|++++|...
T Consensus 378 ~~~~Al~----------------------------------~~~~~~~~----------~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 378 IFKKARE----------------------------------DARTRHHV----------YVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHT----------------------------------CTTCCTHH----------HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHh----------------------------------ccCCchHH----------HHHHHHHHHHHcCChhHHHHH
Confidence 3332111 00000000 0011111 2346899999999
Q ss_pred hHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH----HHHHHHHHHHHhhhhhh
Q psy12713 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV----ARAQRHFVWTSTLAELM 535 (551)
Q Consensus 472 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~~~~~~~~~~~ 535 (551)
|+++++.+|+++.+|..+|.++...|+.++|...|++++...|.++. .|..........|+...
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999998776654 66666666666665443
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-26 Score=208.93 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ 170 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 170 (551)
.+.++..+|.++...|++++|+..|+++++.. .++ .++..+|.++...| ++++|+..+++++...|++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHH
Confidence 56788888888888888888888888888877 553 35666888888888 8888888888888887766
Q ss_pred -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713 171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT 249 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 249 (551)
+.++..+|.++...|++++|+..+++++.+.|. +.++... |++++|+..+++++..+|.++.++.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKL------RNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHH------HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHH------hHHHHHHHHHHHHHHcCcchHHHHH
Confidence 678888888888889999999999988888876 2334444 9999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713 250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (551)
.+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+.+++++++.+|+++.++..+|.++...|+
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc------cCHHHHHHHH
Q psy12713 330 LEEAVKCFNKALPLA------RDEAELSHIY 354 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~------~~~~~~~~~~ 354 (551)
+++|+.+|++++++. |++..+...+
T Consensus 223 ~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 223 YASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 999999999999999 8877765544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.96 E-value=1.6e-26 Score=210.73 Aligned_cols=266 Identities=15% Similarity=0.143 Sum_probs=234.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
.....+..|+|.+|+..++++...+|+ ...++...++.+|..+|++++|+..++.. + .+ ...++..++..+
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~--~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~--~~--~~~a~~~la~~~ 75 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPE--RDVERDVFLYRAYLAQRKYGVVLDEIKPS---S--AP--ELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHH--HHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S--CH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCch--hhHHHHHHHHHHHHHCCCHHHHHHHhccc---C--Ch--hHHHHHHHHHHH
Confidence 456788899999999999998888886 23578889999999999999999877541 2 22 256778899999
Q ss_pred HHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713 147 LHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (551)
...+ +.++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..++.++...
T Consensus 76 ~~~~-~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~------ 143 (291)
T 3mkr_A 76 ASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL------ 143 (291)
T ss_dssp HCST-THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT------
T ss_pred cCCC-cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC------
Confidence 9999 999999999999876 699999999999999999999999999998 89999999999888888
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFA--QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
|++++|+..++++++.+|++.......+ .++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..
T Consensus 144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~ 222 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGV 222 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 9999999999999999999875544433 444456899999999999999999999999999999777 9999999999
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCHHH-HHHHHHHhcccccCHHHHHHHH
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEE-AVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
++++++.+|+++.++.++|.++...|+.++ +..+++++++++|+++.+....
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999999976 5789999999999999876543
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=7.3e-27 Score=212.56 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----h
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----D 172 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 172 (551)
+++.++.+|.+++..|++++|+..++++++.+|+++. ++..+|.++...| ++++|+..+++++. .|.++ .
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~-~~~~A~~~~~~a~~-~~~~~~~~~~ 75 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELA-KYDLAQKDIETYFS-KVNATKAKSA 75 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTT-CHHHHHHHHHHHHT-TSCTTTCCHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHh-hHHHHHHHHHHHHh-ccCchhHHHH
Confidence 4567899999999999999999999999999999866 4555999999999 99999999999999 44444 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
++..+|.++...|++++|+..++++++.+|.+..++..+|.++... |++++|+..+++++..+|.++.++..+|
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK------GNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT------TCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc------cCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 4899999999999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---cCC-----HHHHHHHH
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEAIKLIEKAISID---KSC-----MFAYETLG 321 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~ 321 (551)
......+++++|+..|+++++.+|+++.++..+|.++.. .|+ +++|+..++++++.. |+. ..++..+|
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA-QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 555556699999999999999999999999999999777 788 889999999999875 442 36889999
Q ss_pred HHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357 (551)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 357 (551)
.++...|++++|+.+|+++++++|+++.+...+...
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 999999999999999999999999999877666433
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=209.68 Aligned_cols=244 Identities=14% Similarity=0.107 Sum_probs=226.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch---hHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK---IKV 136 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 136 (551)
.+..++.+|..++..|++++|+..|+++++.. . ++.++..+|.++...|++++|+..++++++..|++.. ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 57889999999999999999999999999999 6 7899999999999999999999999999998776521 125
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
.++..+|.++...| ++++|+..+++++...|. +.++...|++++|+..+++++..+|....++..+|.++.
T Consensus 80 ~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 80 KSFARIGNAYHKLG-DLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 67888999999999 999999999999999987 567888899999999999999999999999999998888
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (551)
.. |++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.. .|++
T Consensus 151 ~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~ 223 (258)
T 3uq3_A 151 TK------SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEY 223 (258)
T ss_dssp HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred Hh------cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhH
Confidence 88 9999999999999999999999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHHHHHHHHHhcC------cCCHHHHHHHHHH
Q psy12713 297 DEAIKLIEKAISID------KSCMFAYETLGTI 323 (551)
Q Consensus 297 ~~A~~~~~~~~~~~------~~~~~~~~~l~~~ 323 (551)
++|+.+++++++.+ |++..++..++.+
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999999998 8888887777654
No 32
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=228.41 Aligned_cols=264 Identities=13% Similarity=0.122 Sum_probs=165.4
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIK 135 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 135 (551)
.....++..|..++..|++++|+..|++++...|.+ .....++..+|.++...|++++|+..+++++...+ .++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 356667777777777777777777777777777763 11245677777777777777777777777776532 222333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
..++..+|.++...| ++++|+..+++++...|.. ..++..+|.++...|++..+... ..+ ......+
T Consensus 87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~~--~~~~~~a-- 159 (406)
T 3sf4_A 87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP--QDV--GEFPEEV-- 159 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-----------CCCCHHH--
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc--chh--hhhhhhH--
Confidence 556666777777777 7777777777777665433 23566666666666661000000 000 0000000
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---
Q psy12713 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDT------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--- 280 (551)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 280 (551)
...+++|+..+++++.. .|....++..+|.++...|++++|+..++++++..+....
T Consensus 160 --------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 160 --------------RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 01144444444444332 1223456778888888888888888888888876544332
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 281 ---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 281 ---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
++..+|.++.. .|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 226 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 226 ERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 67777887666 788888888888887776554 5677788888888888888888888776654
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.8e-26 Score=201.32 Aligned_cols=209 Identities=15% Similarity=0.119 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
++.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...| ++++|+..++++++.+|+++.++..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLG-LVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 556677777777777777777777777777777663 34555777777777 7777777777777777777777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+|.++...+.. .+. ..... |++++|+..++++++.+|+++.++..+|.++.
T Consensus 79 lg~~~~~~~~~-------------~~~----------~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 79 LSEAYVALYRQ-------------AED----------RERGK------GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHHHHT-------------CSS----------HHHHH------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-------------hhh----------hcccc------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 77776665200 000 00111 88888888888888888888888899999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 336 (551)
..|++++|+..|+++++++ +++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 130 ~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------
T ss_pred HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999999888 888888899988777 89999999999999999999999999999999999999999888
Q ss_pred HHHhc
Q psy12713 337 FNKAL 341 (551)
Q Consensus 337 ~~~a~ 341 (551)
|+++-
T Consensus 208 ~~~~~ 212 (217)
T 2pl2_A 208 AALEH 212 (217)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88764
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.3e-26 Score=200.70 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=168.8
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
+++..++..|..++..|++++|+..|+++++.+|+ ++.+++.+|.++...|++++|+..++++++.+|+++ .+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a 75 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL----GG 75 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HH
Confidence 46788999999999999999999999999999999 999999999999999999999999999999999984 46
Q ss_pred HHHHHHHHHHh-----------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 139 HIKRAVVHLHA-----------ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 139 ~~~la~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
+..+|.++... | ++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKG-YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHHHHHHHhhhhhhhhccccc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 67799999999 9 99999999999999999999999999999999999999999999999988 88888
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
+..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 154 ~~~la~~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSM------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888877777 888888888888888888888888888888888888888888887654
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=9e-26 Score=205.80 Aligned_cols=222 Identities=9% Similarity=0.132 Sum_probs=106.7
Q ss_pred HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
-.+..|+|+.|+..+++....+|++ ...+...++.+|...| +++.|+..++. .+|....++..++..+...|+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g-~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQR-KYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTT-CHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCC-CHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence 3445555555555555544444332 1223344555555555 55555554433 133334445555555555555
Q ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH
Q psy12713 187 YEEALRNLDKTIAL--NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 187 ~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 264 (551)
+++|++.+++++.. +|+++.++..+|.++... |++++|+..+++ |.++.++..+|.++...|++++|
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~------g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD------QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT------TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC------CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555443 355555555555444444 555555555544 44455555555555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 265 EEYFNRSIRVDPENASLYVHRAMLML-QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+..++++++.+|++.......+.+.+ ...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555544332222221111 11244555555555555555555555555555555554444444444444444
Q ss_pred ccC
Q psy12713 344 ARD 346 (551)
Q Consensus 344 ~~~ 346 (551)
+|+
T Consensus 230 ~p~ 232 (291)
T 3mkr_A 230 DSG 232 (291)
T ss_dssp CTT
T ss_pred CCC
Confidence 333
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=215.84 Aligned_cols=248 Identities=14% Similarity=0.108 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIK 135 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 135 (551)
+..++..|..++..|++++|+..+++++...+ +.+....++..+|.++...|++++|+..+++++...|.. +...
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 57889999999999999999999999987743 225668899999999999999999999999999998753 4445
Q ss_pred HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCCHHH
Q psy12713 136 VNAHIKRAVVHLHAASD--------------------FTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQYEE 189 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~ 189 (551)
..++..+|.++...| + +++|+..+++++.. .|....++..+|.++...|++++
T Consensus 127 ~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 205 (406)
T 3sf4_A 127 ARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205 (406)
T ss_dssp HHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred HHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHH
Confidence 568899999999999 9 99999999999876 23335678888999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
|+..+++++.+.+...... ....++..+|.++...|++++|+..++
T Consensus 206 A~~~~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKA----------------------------------AERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999998888765432200 002345556666666666666666666
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 270 RSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 270 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
+++...|.. ..++..+|.++.. .|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666554433 4455566666555 666666666666666554332 445666666666666666666666
Q ss_pred HHhcccc
Q psy12713 338 NKALPLA 344 (551)
Q Consensus 338 ~~a~~~~ 344 (551)
++++++.
T Consensus 331 ~~al~~~ 337 (406)
T 3sf4_A 331 EKHLEIS 337 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=9.1e-26 Score=218.53 Aligned_cols=250 Identities=13% Similarity=0.144 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKV 136 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 136 (551)
....++..|..++..|++++|+..|+++++..|.+ .....++..+|.++...|++++|+..+++++... ..+.....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 33444455555555555555555555555555542 1112345555555555555555555555555441 11112223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhc
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIAL 200 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~ 200 (551)
.++..+|.++...| ++++|+..+++++.. .|....++..+|.++...|+ +++|..
T Consensus 127 ~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~-------- 197 (411)
T 4a1s_A 127 KSSGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE-------- 197 (411)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH--------
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH--------
Confidence 34444555555555 555555555555444 22223344444444444444 000000
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713 201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 274 (551)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 274 (551)
.+++|+..+++++... +....++..+|.++...|++++|+.+++++++.
T Consensus 198 -------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 198 -------------------------ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0444444444444332 223456777788888888888888888887776
Q ss_pred CCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 275 DPENAS------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 275 ~~~~~~------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+.... ++..+|.++.. .|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIF-LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554322 66777777665 777777777777777665543 55667777777777777777777777665
Q ss_pred cc
Q psy12713 343 LA 344 (551)
Q Consensus 343 ~~ 344 (551)
+.
T Consensus 332 ~~ 333 (411)
T 4a1s_A 332 IA 333 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=6.2e-24 Score=212.27 Aligned_cols=374 Identities=9% Similarity=-0.005 Sum_probs=270.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 84 CTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163 (551)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~ 163 (551)
++++++.+|. +..+|..++.. ...|++++|...|+++++..|.+.. .|..++..+...| ++++|...|+++
T Consensus 2 le~al~~~P~---~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~----~w~~~~~~~~~~~-~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEENPY---DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGR----FWKLYIEAEIKAK-NYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHCTT---CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred hhhHhhhCCC---CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 6788999998 99999999984 7899999999999999999999844 5666999999999 999999999999
Q ss_pred HhcCCCChhHHHHHHHH-HHHhCCHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHHh---hcCCChhHHHHHHH
Q psy12713 164 EKVDPNVADSYYQRGQI-YCLFGQYEEALR----NLDKTIAL---NPNFHVARAQRHFVVHKM---IVPGDRERVEQSLK 232 (551)
Q Consensus 164 ~~~~~~~~~~~~~la~~-~~~~~~~~~A~~----~~~~~l~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~ 232 (551)
+...| +.+.|..++.. ....|++++|.+ .|++++.. +|.+...|...+...... ..+...|+++.|..
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 99999 67788888854 445677777665 77777654 556677777666544321 01122599999999
Q ss_pred HHHHHHHhCCCcH--HHHHHHHHHH-------------HhccCHHHHHHHHHH------HHhc-----CCCC-------H
Q psy12713 233 EFRNFVDTHSNVV--EACTLFAQVL-------------VDQEDFDGAEEYFNR------SIRV-----DPEN-------A 279 (551)
Q Consensus 233 ~~~~~~~~~~~~~--~~~~~la~~~-------------~~~~~~~~A~~~~~~------~~~~-----~~~~-------~ 279 (551)
.|++++. .|... ..|...+... ...+++..|...+.. .++. .|.. .
T Consensus 152 ~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 152 VYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999999 56542 3333333221 234677888877765 4442 3332 2
Q ss_pred HHHHHHHHHHHHhc-----CCH----HHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-------hCCHH-------HHHHH
Q psy12713 280 SLYVHRAMLMLQAR-----GNV----DEAIKLIEKAISIDKSCMFAYETLGTIEVQ-------RGRLE-------EAVKC 336 (551)
Q Consensus 280 ~~~~~l~~~~~~~~-----~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 336 (551)
..|.... .+... ++. ..++..|++++...|.++.+|..+|.++.. .|+++ +|+..
T Consensus 231 ~~w~~~~--~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 231 DMWKKYI--QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHH--HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 3443333 23311 232 488899999999999999999999999987 79987 99999
Q ss_pred HHHhcc-cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccC
Q psy12713 337 FNKALP-LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMD 415 (551)
Q Consensus 337 ~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (551)
|+++++ ..|++..++..++...... +....+...+.+...
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~-----------------------g~~~~A~~~~~~al~---------------- 349 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESR-----------------------MKYEKVHSIYNRLLA---------------- 349 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHhC----------------
Confidence 999997 8999998887776442111 111222222222100
Q ss_pred cchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhH-H
Q psy12713 416 KADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI-Y 493 (551)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~ 493 (551)
..|.++ ...+...+. ....|++++|+..|+++++..|.....+...|.+ +
T Consensus 350 ------------------~~p~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 350 ------------------IEDIDP----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp ------------------SSSSCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred ------------------ccccCc----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 111111 011222222 4457889999999999999999888888777766 4
Q ss_pred HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713 494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAF 537 (551)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 537 (551)
...|++++|...|+++++.+|+++.+|..++.++...|+...|.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 46999999999999999999999999999999998888765543
No 39
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=5.3e-23 Score=203.39 Aligned_cols=364 Identities=13% Similarity=0.094 Sum_probs=281.1
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----hcC
Q psy12713 80 AIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----AAS 151 (551)
Q Consensus 80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~ 151 (551)
++..+.++.+ +. ++.+++.+|.+|.. .+++++|+..|+++.+. ++ ..+++.+|.+|.. .+
T Consensus 26 ~~~~~~~~a~--~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~----~~a~~~Lg~~y~~g~g~~~- 93 (490)
T 2xm6_A 26 NLEQLKQKAE--SG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY----TPAEYVLGLRYMNGEGVPQ- 93 (490)
T ss_dssp CHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC----HHHHHHHHHHHHcCCCCCC-
Confidence 3444554443 34 67899999999999 89999999999999986 33 4577889999999 89
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
++++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++... +++.++..+|.++... ....+++
T Consensus 94 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEG--DGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--SSSCCCH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--CCCCCCH
Confidence 999999999999875 578999999999999 89999999999999875 5789999999887752 1124899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCCHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ---ARGNVDEAI 300 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~ 300 (551)
++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.++.. ..+++++|+
T Consensus 168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999886 579999999999998 89999999999999875 568899999999764 268999999
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQ----RGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (551)
.+|+++++. .++.++..+|.++.. .+++++|+.+|+++.+.. ++.....++.... .. ....
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~---------~~--~~g~ 308 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYD---------KG--AEGV 308 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHH---------HC--BTTB
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH---------cC--CCCC
Confidence 999999875 568899999999999 999999999999998763 3333222221100 00 0000
Q ss_pred CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES 456 (551)
Q Consensus 377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (551)
..+...++..+.+..+ .+++ ..+...
T Consensus 309 -------~~~~~~A~~~~~~a~~------------------------------------~~~~-----------~a~~~l 334 (490)
T 2xm6_A 309 -------AKNREQAISWYTKSAE------------------------------------QGDA-----------TAQANL 334 (490)
T ss_dssp -------CCCHHHHHHHHHHHHH------------------------------------TTCH-----------HHHHHH
T ss_pred -------cCCHHHHHHHHHHHHh------------------------------------cCCH-----------HHHHHH
Confidence 0112222222222110 0000 111112
Q ss_pred ch-hhhh---cChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 457 GQ-KHAA---SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 457 ~~-~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
+. +... +++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 22 3332 3799999999999987 679999999999999 89999999999999986 46899999999999
Q ss_pred H----hhhhhhhhh
Q psy12713 529 S----TLAELMAFS 538 (551)
Q Consensus 529 ~----~~~~~~a~~ 538 (551)
. .++..+|+.
T Consensus 411 ~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 411 YGLGVERDYVQAWA 424 (490)
T ss_dssp HTSSSCCCHHHHHH
T ss_pred cCCCCCCCHHHHHH
Confidence 8 667666654
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.5e-25 Score=210.67 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIKVN 137 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 137 (551)
...++..|..++..|++++|+..|+++++..|.+ .....++..+|.++...|++++|+..+++++...+ .++.....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3444555555555555555555555555555442 11134455555555555555555555555554311 11122233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 211 (551)
++..+|.++...| ++++|+..+++++...|.. ..++..+|.++...|++..+ ..+.... .
T Consensus 85 ~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~--~-- 150 (338)
T 3ro2_A 85 ASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC---------PGPQDTG--E-- 150 (338)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS---------SSCC--------
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc---------chhhhhh--h--
Confidence 4444555555555 5555555555544443322 11444444444444440000 0000000 0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------H
Q psy12713 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDT------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------A 279 (551)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 279 (551)
........+++|+..+++++.. .+....++..+|.++...|++++|+..++++++..+.. .
T Consensus 151 -------~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 151 -------FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 0000000044444444444332 11223456667777777777777777777766654322 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
.++..+|.++.. .|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 224 ~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 224 RAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 255666666555 666666666666666554443 455566666666666666666666666554
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=2e-25 Score=209.70 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIK 135 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 135 (551)
+..+...|..+...|++++|+..+++++...+ +.+....++..+|.++...|++++|+..+++++...+.. +...
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 57788999999999999999999999987743 225668899999999999999999999999999997754 4444
Q ss_pred HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHhCCHHH
Q psy12713 136 VNAHIKRAVVHLHAASD--------------------FTKAFADLDEAEKVD------PNVADSYYQRGQIYCLFGQYEE 189 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~ 189 (551)
..++..+|.++...| + +++|+..+++++... +....++..+|.++...|++++
T Consensus 123 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 123 ARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 568889999999999 9 999999999988762 2335578888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
|+..+++++...+.... . +....++..+|.++...|++++|+..++
T Consensus 202 A~~~~~~a~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGD--------------------K--------------AAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHHHHHHHTC--------------------H--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--------------------h--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888866432111 0 0113466778888888888888888888
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 270 RSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 270 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
+++...+.. ..++..+|.++.. .|++++|+.++++++...+.. ..++..+|.++...|++++|..++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 888775544 5677788888776 899999999998888765432 457888999999999999999999
Q ss_pred HHhcccccC
Q psy12713 338 NKALPLARD 346 (551)
Q Consensus 338 ~~a~~~~~~ 346 (551)
++++++.+.
T Consensus 327 ~~a~~~~~~ 335 (338)
T 3ro2_A 327 EKHLEISRE 335 (338)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHHh
Confidence 999887665
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.94 E-value=2.5e-24 Score=196.04 Aligned_cols=250 Identities=12% Similarity=0.064 Sum_probs=216.4
Q ss_pred HHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 71 AFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
....|++++|+..|+++++..+.. +..+.++..+|.++...|++++|+..|++++..+|+++ .++..+|.++...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHc
Confidence 345699999999999999985432 35899999999999999999999999999999999884 4667799999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHH
Q psy12713 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ 229 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (551)
| ++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++..|++.......+.+ ... |++++
T Consensus 91 ~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~------~~~~~ 162 (275)
T 1xnf_A 91 G-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK------LDEKQ 162 (275)
T ss_dssp T-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH------HCHHH
T ss_pred c-CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh------cCHHH
Confidence 9 999999999999999999999999999999999999999999999999999998666555433 444 99999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
|+..+.+++...|.+...+. ++.++...++.++|+..+++++...|.. +.++..+|.++.. .|++++|+..+++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS-LGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 99999999999988866654 7778888899999999999999887643 6789999999877 9999999999999
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
++..+|++... .+.++...|++++|++.+
T Consensus 241 al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999977544 477888999999999887
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=2.9e-25 Score=214.96 Aligned_cols=252 Identities=15% Similarity=0.113 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKV 136 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 136 (551)
..++..|..+...|++++|+..+++++... ++.+....++..+|.++...|++++|+..+++++...+. +.....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 578899999999999999999999998874 223677899999999999999999999999999998432 233346
Q ss_pred HHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHhCCHHHHHHH
Q psy12713 137 NAHIKRAVVHLHAASD-----------------FTKAFADLDEAEKVD------PNVADSYYQRGQIYCLFGQYEEALRN 193 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~-----------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~ 193 (551)
.++..+|.++...| + +++|+.++++++... +....++..+|.++...|++++|+.+
T Consensus 167 ~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 167 RALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 68889999999999 9 999999999988763 22345788888899999999999988
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 194 LDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
+++++.+.+...... ....++..+|.++...|++++|+..+++++.
T Consensus 246 ~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 246 HQERLRIAREFGDRA----------------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHHHTCHH----------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888887654311100 0134677888899999999999999999888
Q ss_pred cCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 274 VDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 274 ~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
..+.. ..++..+|.++.. .|++++|+.++++++...+.. ..++..+|.++...|++++|..+|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 76643 5678889999777 999999999999998875432 5588999999999999999999999999
Q ss_pred ccccCHHH
Q psy12713 342 PLARDEAE 349 (551)
Q Consensus 342 ~~~~~~~~ 349 (551)
++.+....
T Consensus 371 ~~~~~~~~ 378 (411)
T 4a1s_A 371 QLAXXXXX 378 (411)
T ss_dssp HHCCHHHH
T ss_pred HHHhhccc
Confidence 98776443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.9e-24 Score=191.72 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=129.3
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
.-.+..++.+|..++..|++++|+..|++++...|. ...++..+|.++...|++++|+..++++++..|.+ ..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 92 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSA----AT 92 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----hH
Confidence 445666777777777777777777777777777776 66777777777777777777777777777776665 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
++..+|.++...| ++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.+...+..++.++..
T Consensus 93 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 93 AYYGAGNVYVVKE-MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 4455777777777 777777777777777777777777777777777777777777777776666666666666655555
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
. |++++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 172 ~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 172 E------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp H------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred c------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 5 6666666666666666666666666666666666666666666666666666665555555443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3e-24 Score=191.61 Aligned_cols=222 Identities=21% Similarity=0.236 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175 (551)
Q Consensus 96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 175 (551)
..+..++.+|.++...|++++|+..++++++..|.+ ..++..+|.++...| ++++|+..+++++..+|.+..++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVN-ELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcchHHHH
Confidence 367889999999999999999999999999999988 446677999999999 999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
.+|.++...|++++|+..++++++..|.+...+..++.++... |++++|+..+++++...|+++.++..+|.++
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888 9999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (551)
...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++..++.+....|+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999877 9999999999999999999999999999887765553
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1e-23 Score=179.23 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=129.8
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248 (551)
Q Consensus 169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 248 (551)
+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+|.++... |++++|+..+.+++...|+++.++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI------GLPNDAIESLKKFVVLDTTSAEAY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCchhHHHH
Confidence 34566777777777777777777777777777777777777777666666 777777777777777777777777
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
..+|.++...++++.|...+.+++..+|++..++..+|.++.. .|++++|+..|+++++.+|.++.++..+|.++..+|
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 7777777777777777777777777777777777777777666 777777877777777777777777777888887788
Q ss_pred CHHHHHHHHHHhcccccCHH
Q psy12713 329 RLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 329 ~~~~A~~~~~~a~~~~~~~~ 348 (551)
++++|+..|+++++++|+++
T Consensus 156 ~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHhCCccCH
Confidence 88888888888777777654
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=3.5e-24 Score=208.36 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=168.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQS---TKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
...|..++..|++++|+..|+++.+.. ++.+++.+|.++...|++ ++|+..|+++++. + ..+++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~----~~A~~~ 74 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S----PRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCTGGGTCC-----------------------------------CHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C----HHHHHH
Confidence 457999999999999999999998764 456888999999999998 9999999999976 3 235666
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 142 RAVVHLHAA----SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE---ALRNLDKTIALNPNFHVARAQRHFV 214 (551)
Q Consensus 142 la~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~l~~~~~~~~~~~~~~~~ 214 (551)
+|.++...+ +++++|+.+|++++.. +++.+++.+|.+|...+...+ +...+.++.. +.++.+...+|.+
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 898555543 2789999999999984 456688999999988776444 3444444433 3456677778877
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (551)
+.... .-....+.+..+++.+...+|. +++.+|.++...| ++++|+..|+++.+..|.....++.+|.++..
T Consensus 151 y~~~~--~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 151 YRTQG--TYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHT--CGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred HHcCC--CcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 76650 1112444555555555544444 7888888888888 88888888888888888888877888888543
Q ss_pred hc----CCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-H--HHhCCHHHHHHHHHHhccc
Q psy12713 292 AR----GNVDEAIKLIEKAISIDKSCMFAYETLGTI-E--VQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 292 ~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~ 343 (551)
. +++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.+.
T Consensus 226 -g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 226 -ATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -GGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -CCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 3 58888888888887 7888888888888 4 4678888888888888754
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=9e-24 Score=192.37 Aligned_cols=185 Identities=10% Similarity=0.084 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 152 DFTKAFADLDEAEKVD----PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
++++|+..++++++.. |.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++... |++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------~~~ 93 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA------GNF 93 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT------TCH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc------cCH
Confidence 5666666666666552 233455666666666666666666666666666666555555555555544 555
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++......+.. .. .|++++|+..+.+++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-hcCHHHHHHHHHHHH
Confidence 5555555555555666666666666666666666666666666666666666555444433 33 566777777776666
Q ss_pred hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 308 SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
...|.+...+. ++.++...++.++|+..+++++...|
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 66666544433 55555556666666666666665543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=4.7e-23 Score=184.94 Aligned_cols=207 Identities=17% Similarity=0.083 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
+.+++.+|.++...|++++|+..+++++...|.+ ..++..+|.++...| ++++|+..+++++..+|.+..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEM-EPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 6666777777777777777777777777766665 334455677777777 77777777777777666666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIA--LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
|.++...|++++|+..+++++. ..|.+...+ ..+|.++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------------------------------~~la~~~ 151 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF----------------------------------------ENLGLVS 151 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHH----------------------------------------HHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHH----------------------------------------HHHHHHH
Confidence 7666666666666666666666 444444444 4445555
Q ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335 (551)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 335 (551)
...|++++|+..++++++..|.++.++..+|.++.. .|++++|+..++++++..|.+..++..++.++...|++++|..
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 555555555555555555555555555555555444 5555555555555555555555555555555555555555555
Q ss_pred HHHHhcccccCHHHH
Q psy12713 336 CFNKALPLARDEAEL 350 (551)
Q Consensus 336 ~~~~a~~~~~~~~~~ 350 (551)
+++++++..|+++..
T Consensus 231 ~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHCTTSHHH
T ss_pred HHHHHHHHCCCCHHH
Confidence 555555555554443
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.4e-23 Score=192.39 Aligned_cols=183 Identities=11% Similarity=0.065 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q psy12713 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCL-------FGQY-------EEALRNLDKTIA-LNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 218 (551)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. +.|++..+|..++.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 344444444444444444444444444432 2442 455555555555 3455555555555444443
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (551)
|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|....++...+.+.+...|+++
T Consensus 113 ------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 113 ------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp ------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred ------CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555554443 455555555555555555555555555555544444444333222235555
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
+|+.+|+++++.+|+++.+|..+|.++...|++++|+..|++++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=1.3e-22 Score=181.97 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=186.5
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
...+..++..|..+...|++++|+..|++++...|. ...++..+|.++...|++++|+..++++++..|.+. .
T Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~ 106 (252)
T 2ho1_A 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----R 106 (252)
T ss_dssp HHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----H
Confidence 334888999999999999999999999999999998 899999999999999999999999999999999874 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
++..+|.++...| ++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 107 ~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 107 VLNNYGGFLYEQK-RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 6677999999999 99999999999999 88888999999999999999999999999999999998888887777777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (551)
... |++++|+..+++++...|.+..++..++.++...|++++|...++++++..|+++....
T Consensus 186 ~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 186 YKE------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHT------TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHc------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 666 77888888888877777777777777777777777777777777777777777766543
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=4.3e-23 Score=200.67 Aligned_cols=335 Identities=14% Similarity=0.086 Sum_probs=242.7
Q ss_pred chHHHHHHHHHHHhhhcH---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----CchHHHHHHHHHhhcCCCC
Q psy12713 60 HELDLLSKAKRAFEHEDY---LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-----QSTKAIEDLTQLVEDTSVD 131 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~~~~ 131 (551)
++++++.+|..+...|++ ++|+.+|+++++.+ +.+++.+|.++...| ++++|+..|++++...+..
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~ 107 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN 107 (452)
T ss_dssp CCTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 345667788888888888 99999999999763 458899999777766 7889999999999865433
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH----HHHHHHHHHHhcCCCC
Q psy12713 132 PKIKVNAHIKRAVVHLHAASDFTKA---FADLDEAEKVDPNVADSYYQRGQIYCLFGQYE----EALRNLDKTIALNPNF 204 (551)
Q Consensus 132 ~~~~~~~~~~la~~~~~~~~~~~~A---~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----~A~~~~~~~l~~~~~~ 204 (551)
+++.+|.+|...+ ...++ ...+.++.. +.++.+++.+|.+|...+.++ ++..+++.+...+|.
T Consensus 108 ------A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~- 177 (452)
T 3e4b_A 108 ------TLIPLAMLYLQYP-HSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI- 177 (452)
T ss_dssp ------CHHHHHHHHHHCG-GGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT-
T ss_pred ------HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH-
Confidence 5566999999888 65544 444444432 456889999999999999554 455555555555544
Q ss_pred HHHHHHHHHHHHHhhcCCChh---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc----cCHHHHHHHHHHHHhcCCC
Q psy12713 205 HVARAQRHFVVHKMIVPGDRE---RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----EDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~ 277 (551)
++..+|.++... | ++++|+..|+++....|.....++.+|.+|... +++++|+.+|+++. |+
T Consensus 178 --a~~~Lg~~~~~~------g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g 246 (452)
T 3e4b_A 178 --CYVELATVYQKK------QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG 246 (452)
T ss_dssp --HHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG
T ss_pred --HHHHHHHHHHHc------CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC
Confidence 888999888766 7 999999999999999999999999999999766 79999999999998 89
Q ss_pred CHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHhcccccCHHHH
Q psy12713 278 NASLYVHRAMLML--QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-----RLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 278 ~~~~~~~l~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++.+++++|.+++ ...+++++|+.+|+++.+. +++.+++.+|.+|. .| ++++|+.+|+++. |+++..
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 9999999999965 4489999999999999865 47999999999998 66 9999999999999 666654
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430 (551)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (551)
...++..
T Consensus 321 ~~~Lg~~------------------------------------------------------------------------- 327 (452)
T 3e4b_A 321 DYYLGQI------------------------------------------------------------------------- 327 (452)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 4333211
Q ss_pred CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH----hcCHHHHHHHH
Q psy12713 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNL 506 (551)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~ 506 (551)
+..+ .....++++|+.+|+++.+ ++++.+.+++|.+|.. .+++++|..+|
T Consensus 328 ----------------------y~~G--~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 328 ----------------------YRRG--YLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp ----------------------HHTT--TTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred ----------------------HHCC--CCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 0000 0011489999999999987 4678999999999985 56999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHH
Q psy12713 507 DKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 507 ~~al~~~p~~~~a~~~l~~~~~ 528 (551)
+++.+..+ +.+...++.+..
T Consensus 382 ~~A~~~g~--~~a~~~l~~l~~ 401 (452)
T 3e4b_A 382 QLAKAQDT--PEANDLATQLEA 401 (452)
T ss_dssp HHHHTTCC--HHHHHHHHHHHT
T ss_pred HHHHHCCC--HHHHHHHHHHHH
Confidence 99998765 445555555543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=5.3e-23 Score=174.81 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
..|+.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..++.++.
T Consensus 6 ~iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 35566777777777 77777777777777777777777777777777777777777777777777777777777776666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (551)
.. ++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++
T Consensus 85 ~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~ 157 (184)
T 3vtx_A 85 MI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLR 157 (184)
T ss_dssp HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred Hc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCH
Confidence 65 7777777777777777777777777777777777777777777777777777777777777777665 7777
Q ss_pred HHHHHHHHHHHhcCcCCH
Q psy12713 297 DEAIKLIEKAISIDKSCM 314 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~ 314 (551)
++|+.+|+++++.+|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 777777777777777643
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=3.3e-22 Score=184.76 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHh-cCCCChhHHHHHHH
Q psy12713 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH-------AASDF-------TKAFADLDEAEK-VDPNVADSYYQRGQ 179 (551)
Q Consensus 115 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~ 179 (551)
++|+..|++++..+|.++. +|+.+|..+.. .| ++ ++|+..|++++. .+|++..+|..+|.
T Consensus 33 ~~a~~~~~~al~~~p~~~~----~w~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD----IWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhchhhhhcc-chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4555666666666666533 33335555442 35 53 777777777777 57777777777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-
Q psy12713 180 IYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD- 257 (551)
Q Consensus 180 ~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 257 (551)
++...|++++|...|++++++.|.+.. +|..++.++... |++++|+..|+++++..|....++...+.+...
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777665 677777666665 777778888888777777777776666555433
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---Cc-CCHHHHHHHHHHHHHhCCHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI---DK-SCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~A 333 (551)
.|++++|+..|+++++.+|+++.+|..++..+.. .|++++|+.+|++++.. .| ....+|..++..+...|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6888888888888888888888888888888655 88888888888888885 45 3677888888888888888888
Q ss_pred HHHHHHhcccccCHH
Q psy12713 334 VKCFNKALPLARDEA 348 (551)
Q Consensus 334 ~~~~~~a~~~~~~~~ 348 (551)
...++++++..|++.
T Consensus 261 ~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 261 LKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHccccc
Confidence 888888888888753
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=3.7e-23 Score=202.42 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=199.9
Q ss_pred CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF-TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
.+++++..+++.....|.+ ..+++.+|.++...| ++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~----a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVE----AQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccCchh----HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788888888777766 556777999999999 99 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh---------hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc----
Q psy12713 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR---------ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---- 258 (551)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 258 (551)
.+|+++++++|+ ..++..+| .++... |++++|+..++++++.+|+++.++..+|.++...
T Consensus 158 ~~~~~al~~~p~-~~~~~~lg------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 158 TCFSGALTHCKN-KVSLQNLS------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHTTCCC-HHHHHHHH------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCC-HHHHHHHH------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999 68888888 455556 9999999999999999999999999999999999
Q ss_pred ----cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 259 ----EDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 259 ----~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|++++|+..|+++++++| +++.++.++|.++.. .|++++|+..|+++++.+|+++.++..++.++...|+++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999877 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy12713 332 EAVKCFNKA 340 (551)
Q Consensus 332 ~A~~~~~~a 340 (551)
+|+..+.+.
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 999988765
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=3.1e-22 Score=176.14 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.++..+|.++...|++++|+..+++++...|+++ .++..+|.++...| ++++|+..+++++..+|.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLK-VNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHH
Confidence 666777777777777777777777777777776663 34555777777777 7777777777777777777777777
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713 177 RGQIYCLF-GQYEEALRNLDKTIA--LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253 (551)
Q Consensus 177 la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 253 (551)
+|.++... |++++|+..++++++ ..|.....+..++.++... |++++|+..++++++..|.++.++..+|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777777 777777777777776 3344444555555444444 55555555555555555555555555555
Q ss_pred HHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDP-ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 317 (551)
++...|++++|+..+++++...| .++..+..++.++.. .|++++|..+++.+.+..|+++.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 55555555555555555555555 444444444444333 5555555555555555555554443
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=6.3e-22 Score=179.82 Aligned_cols=234 Identities=14% Similarity=0.147 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChh
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVAD 172 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~ 172 (551)
++.+++.+|.++...|++++|+.+|+++++ |++ ..+++.+|.++.. .+ ++++|+..|+++++.. ++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~----~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE----NSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC----HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC----HHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHH
Confidence 555666666666666666666666666665 333 2344556666666 66 6666666666666553 556
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713 173 SYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248 (551)
Q Consensus 173 ~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 248 (551)
+++.+|.++.. .+++++|+.+|+++++. +++.++..+|.++... ....+++++|+.+++++++.. ++.++
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~--~~~~~~~~~A~~~~~~a~~~~--~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG--KVVTRDFKKAVEYFTKACDLN--DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC--SSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC--CCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence 66666666666 66666666666666655 2556666666555540 011266666666666666654 45667
Q ss_pred HHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713 249 TLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLG 321 (551)
Q Consensus 249 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 321 (551)
..+|.++.. .+++++|+.+|+++++. +++.++..+|.++... .+++++|+.+++++++..| +.++..+|
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 225 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG 225 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 777777777 77888888888887766 3567777778774331 6788888888888877755 67778888
Q ss_pred HHHHH----hCCHHHHHHHHHHhcccccCHHH
Q psy12713 322 TIEVQ----RGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 322 ~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.++.. .+++++|+.+|+++++..|++..
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88887 78888888888888888776544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=5.9e-22 Score=174.35 Aligned_cols=214 Identities=16% Similarity=0.101 Sum_probs=200.4
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
...+..++..|..++..|++++|+..+++++...|. ...++..+|.++...|++++|+..+++++...|.+. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~ 77 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----E 77 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----H
Confidence 347889999999999999999999999999999998 899999999999999999999999999999999874 4
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHA-ASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214 (551)
Q Consensus 138 ~~~~la~~~~~~-~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 214 (551)
++..+|.++... | ++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+...+..++.+
T Consensus 78 ~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 78 INNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 667799999999 9 99999999999999 6677789999999999999999999999999999999999999999988
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 215 VHKMIVPGDRERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 285 (551)
+... |++++|+..+++++...| .++..+..++.++...|+.++|..+++.+...+|+++.+...+
T Consensus 157 ~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 157 KMLA------GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHH------TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHc------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888 999999999999999999 9999999999999999999999999999999999998876543
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.7e-21 Score=177.04 Aligned_cols=235 Identities=12% Similarity=0.132 Sum_probs=208.3
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH----hCCchHHHHHHHHHhhcCCCCchh
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF----TSQSTKAIEDLTQLVEDTSVDPKI 134 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 134 (551)
.++..++..|..+...|++++|+.+|+++++ |. ++.+++.+|.++.. .+++++|+..|+++++.. +
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--- 73 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y--- 73 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---
Confidence 3678999999999999999999999999999 55 67899999999999 999999999999999875 3
Q ss_pred HHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHH
Q psy12713 135 KVNAHIKRAVVHLH----AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHV 206 (551)
Q Consensus 135 ~~~~~~~la~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~ 206 (551)
..+++.+|.++.. .+ ++++|+..|++++.. +++.++..+|.+|.. .+++++|+.+|+++++.. +..
T Consensus 74 -~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 147 (273)
T 1ouv_A 74 -SNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGD 147 (273)
T ss_dssp -HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred -HHHHHHHHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHH
Confidence 4577889999999 99 999999999999987 488999999999999 999999999999999976 678
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLY 282 (551)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 282 (551)
++..++.++... ....+++++|+..++++++. +++.++..+|.++.. .+++++|+.+|+++++..| +.++
T Consensus 148 a~~~lg~~~~~~--~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAG--RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC 221 (273)
T ss_dssp HHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence 888899887761 11239999999999999987 467899999999999 9999999999999999866 7899
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhcCcCCHH
Q psy12713 283 VHRAMLMLQ---ARGNVDEAIKLIEKAISIDKSCMF 315 (551)
Q Consensus 283 ~~l~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~ 315 (551)
..+|.++.. ..+++++|+.+|+++++..|.++.
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 999999543 168999999999999999886443
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=5.8e-23 Score=201.04 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=203.0
Q ss_pred hcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQS-TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 75 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
+.+++++..+.+.....|. .+.+++.+|.++...|++ ++|+..|+++++.+|++ ..++..+|.++...| ++
T Consensus 82 ~~~~~al~~l~~~~~~~~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g-~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKG-DV 153 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC-CH
Confidence 4477888889988888888 999999999999999999 99999999999999998 457777999999999 99
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--hcCC
Q psy12713 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLF---------GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM--IVPG 222 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 222 (551)
++|+..|+++++.+|+ ..++..+|.++... |++++|+..|+++++++|++..++..+|.++... ..-.
T Consensus 154 ~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999 79999999999999 9999999999999999999999999999877654 1112
Q ss_pred ChhHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
..|++++|+..|++++..+| .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++.. .|++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~-lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF-LSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHH
Confidence 34999999999999999999 9999999999999999999999999999999999999999999999666 9999999
Q ss_pred HHHHHH
Q psy12713 300 IKLIEK 305 (551)
Q Consensus 300 ~~~~~~ 305 (551)
+..+.+
T Consensus 312 i~~~~~ 317 (474)
T 4abn_A 312 LESKGK 317 (474)
T ss_dssp HHHTTT
T ss_pred HHHhcc
Confidence 886654
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=2.4e-22 Score=192.19 Aligned_cols=325 Identities=11% Similarity=0.097 Sum_probs=212.7
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHH--HHHHHHhCCchHHH-----------HHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLR--ATVYIFTSQSTKAI-----------EDLT 122 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~ 122 (551)
.+.+...+......+..+++++|..+++++.+..+.. ..+...++.+ .......++++.+. ..++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 4466777777888888888888888888775544321 1122222222 22223344555555 4444
Q ss_pred HHhhcCCCCchhHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---ChhHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 123 QLVEDTSVDPKIKVN--AHIKRAVVHLHAASDFTKAFADLDEAEKV---DPN---VADSYYQRGQIYCLFGQYEEALRNL 194 (551)
Q Consensus 123 ~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~ 194 (551)
++-. .|.+...... .++.+|..+...| ++++|+..+++++.. .++ .+.++..+|.++...|++++|+.++
T Consensus 89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 89 EIDK-KQARLTGLLEYYFNFFRGMYELDQR-EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHh-cCCCchhHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4332 2222111111 1223566666666 666666666666654 121 2355566666666666666666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 274 (551)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 274 (551)
++++++.+..... .+....++..+|.++...|++++|+..++++++.
T Consensus 167 ~~al~~~~~~~~~---------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 167 RQAYEIYKEHEAY---------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHHHHTCSTT---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6665554332110 1112457889999999999999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 275 DPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS-----ID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 275 ~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+.. ..++.++|.++.. .|++++|+.+++++++ .+ |..+.++..+|.++...|++++|+.++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 214 AEAEKQPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5433 2478899999877 9999999999999998 46 77788999999999999999999999999998
Q ss_pred cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHH
Q psy12713 343 LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQK 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (551)
+.+..........
T Consensus 293 ~~~~~~~~~~~~~------------------------------------------------------------------- 305 (383)
T 3ulq_A 293 YSQKAGDVIYLSE------------------------------------------------------------------- 305 (383)
T ss_dssp HHHHHTCHHHHHH-------------------------------------------------------------------
T ss_pred HHHHcCCHHHHHH-------------------------------------------------------------------
Confidence 7543211100000
Q ss_pred HHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC---hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCH
Q psy12713 423 MTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD---FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 499 (551)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 499 (551)
+...+..+...|+ +++|+..+++. ...|....++..+|.+|...|++
T Consensus 306 -----------------------------~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~ 355 (383)
T 3ulq_A 306 -----------------------------FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNF 355 (383)
T ss_dssp -----------------------------HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCH
Confidence 0011111333355 88899988887 44556778999999999999999
Q ss_pred HHHHHHHHHHhhcCCc
Q psy12713 500 EEALRNLDKTIALNPN 515 (551)
Q Consensus 500 ~~A~~~~~~al~~~p~ 515 (551)
++|+.+|++++++...
T Consensus 356 ~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 356 QKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.6e-22 Score=203.49 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=125.6
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246 (551)
Q Consensus 167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 246 (551)
.|++++++.++|.++..+|++++|+..|+++++++|++..++.++|.++... |++++|+..|+++++.+|+++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~------g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------GKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHH
Confidence 4666667777777777777777777777777777777777777777666666 7777777777777777777777
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
++.++|.++...|++++|+..|+++++++|++..++.++|.++.. .|++++|+..|+++++++|+++.++.++|.++..
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 777777777777777777777777777777777777777777555 7777777777777777777777777777777777
Q ss_pred hCCHHHHHHHHHHhcccccCH
Q psy12713 327 RGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~~ 347 (551)
.|++++|.+.+++++++.|+.
T Consensus 158 ~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChhH
Confidence 777777777777777665544
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=9.6e-22 Score=173.36 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
.+++.+|.++...| ++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 8 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 57788999999999 99999999999999998 88999999999999999999999999999999999999999999888
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV-------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRA 286 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 286 (551)
... |++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|
T Consensus 87 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 87 RDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 888 999999999999999999998 66999999999999999999999999999999 899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
.+++. .| ...++++....+.+...+ .+......+.+++|+.+|+++++++|++..+...+.
T Consensus 161 ~~~~~-~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYN-NG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHH-HH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHH-HH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 99765 43 455677777776665443 445566778899999999999999999988766554
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=2.6e-21 Score=170.58 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=184.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
++..++..|..++..|++++|+..|+++++..| . +..+++.+|.++...|++++|+..++++++.+|++ ..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~ 78 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ---DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL----ANA 78 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH----HHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch----HHH
Confidence 568999999999999999999999999999998 6 77889999999999999999999999999999987 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN--FHVARA 209 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~ 209 (551)
+..+|.++...| ++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++++|+ +..++.
T Consensus 79 ~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 79 YIGKSAAYRDMK-NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 777999999999 99999999999999999998 67999999999999999999999999999999 899999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
.+|.+++.. |+ ..++++....+.....+ .+......+.+++|+.+++++++++|+++.+...++.+
T Consensus 158 ~l~~~~~~~------~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 158 SLGVLFYNN------GA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH------HH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH------HH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 999887765 54 34566666666665443 34445667889999999999999999999998888776
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=187.11 Aligned_cols=259 Identities=16% Similarity=0.198 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
..++..+|.++...| ++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.....
T Consensus 27 ~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 101 (311)
T 3nf1_A 27 LRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK---- 101 (311)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 556667777777777 777777777777763 4445666777777777777777777777666654210
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CCC
Q psy12713 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PEN 278 (551)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~ 278 (551)
.. ...|....++..+|.++...|++++|+..++++++.. |..
T Consensus 102 -----------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 102 -----------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp -----------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -----------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 00 0023345677888888889999999999998888763 445
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
..++..+|.++.. .|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...|.....
T Consensus 153 ~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 153 AKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6678889999777 99999999999999987 66667889999999999999999999999999876542210
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430 (551)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (551)
...- ..
T Consensus 232 ~~~~------------------------~~-------------------------------------------------- 237 (311)
T 3nf1_A 232 SVDD------------------------EN-------------------------------------------------- 237 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCc------------------------ch--------------------------------------------------
Confidence 0000 00
Q ss_pred CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510 (551)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 510 (551)
... ...........+.....+.+.+|+..+++++..+|..+.++..+|.+|...|++++|+.+|++++
T Consensus 238 --------~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 238 --------KPI----WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --------CCH----HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------HHH----HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 00000111112223345778889999999999999999999999999999999999999999999
Q ss_pred hcCCc
Q psy12713 511 ALNPN 515 (551)
Q Consensus 511 ~~~p~ 515 (551)
++.|+
T Consensus 306 ~l~~~ 310 (311)
T 3nf1_A 306 RSRKQ 310 (311)
T ss_dssp HHHC-
T ss_pred HHhhc
Confidence 99875
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=4.1e-21 Score=183.64 Aligned_cols=239 Identities=12% Similarity=0.074 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ 170 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 170 (551)
..++.+|.++...|++++|+..+++++..... ++.....++..+|.++...| ++++|+.++++++...+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHH
Confidence 34556999999999999999999999987322 23334678999999999999 9999999999999985443
Q ss_pred -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH----
Q psy12713 171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH------VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD---- 239 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---- 239 (551)
..++..+|.++...|++++|+.++++++.+.+... .++..+|.++... |++++|+.++++++.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ------SQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999998855432 4778888888877 999999999999999
Q ss_pred -hC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc
Q psy12713 240 -TH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----PENASLYVHRAMLMLQARGN---VDEAIKLIEKAISI 309 (551)
Q Consensus 240 -~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~ 309 (551)
.+ |..+.++..+|.++...|++++|+.++++++... |.....+..+|.++.. .|+ +++|+..+++. ..
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~-~~ 334 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESK-ML 334 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHT-TC
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-cC
Confidence 46 7788999999999999999999999999999874 3333345678888666 888 88888888876 33
Q ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 310 DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
.|....++..+|.+|...|++++|..+|++++++...
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455678899999999999999999999999887543
No 67
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=5.5e-20 Score=165.76 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHhhhcH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC--CchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 62 LDLLSKAKRAFEHEDY-LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS--QSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
...+.........|.+ ++|+..+.++|..+|+ +..+|..++.++...| ++++++..++.++..+|++.. +
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----a 105 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----I 105 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----H
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----H
Confidence 4445555555667776 5899999999999999 9999999999999999 999999999999999999855 5
Q ss_pred HHHHHHHH----HHh---cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCCHHHHH
Q psy12713 139 HIKRAVVH----LHA---ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE--EALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 139 ~~~la~~~----~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~~~~~~~~~ 209 (551)
|..++.++ ... + ++++++..++++++.+|.+..+|..++.+....|.++ +++++++++++.+|.+..+|.
T Consensus 106 W~~R~~iL~~~~~~l~~~~-~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDF-DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCC-CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 55577777 666 6 8899999999999999999999999999999999888 999999999999999999998
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH-HHHHHHHHHhcC---CCCHHHHHHH
Q psy12713 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG-AEEYFNRSIRVD---PENASLYVHR 285 (551)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l 285 (551)
.++.+............++++++++.+++..+|.+..+|+.++.++...|+... ....+.+++..+ |.++.++..+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 888776655000111128888888888888888888888888888888877544 445666666655 6777788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCcCCHHHHHHHHH
Q psy12713 286 AMLMLQARGNVDEAIKLIEKAIS-IDKSCMFAYETLGT 322 (551)
Q Consensus 286 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 322 (551)
+.++.+ .|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 265 a~~~~~-~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 265 AKIYTQ-QKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHc-cCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 887655 7888888888888776 68877777776654
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.88 E-value=8.1e-21 Score=181.14 Aligned_cols=323 Identities=11% Similarity=0.083 Sum_probs=225.9
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHH--HHHhCCchHHH---------HHHHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATV--YIFTSQSTKAI---------EDLTQL 124 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~~ 124 (551)
.+.+...+..-..++..+++++|..+++++....+.. ......++.+-.. ....+.+..+. ..++++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 3456777777778899999999999999875543221 1122333332222 22234444444 555554
Q ss_pred hhcC-CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 125 VEDT-SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
-... +.++......++.+|..+...| ++++|+..+++++...+ ..+.++..+|.+|...|++++|+.+++++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQK-EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3321 1122333346677888889999 99999999999887632 23567888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (551)
+.+.+...... +....++..+|.++...|++++|+..|++++++.+.
T Consensus 168 l~~~~~~~~~~---------------------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 168 LDIYQNHPLYS---------------------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHTSTTCH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCch---------------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 87654322100 012456788899999999999999999999886331
Q ss_pred ------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 278 ------NASLYVHRAMLMLQARGNVDEAIKLIEKAIS-----IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 278 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
...++.++|.++.. .|++++|+.++++++. .+|..+.++..+|.++...|++++|+.++++++.+.+.
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 24578899999877 9999999999999998 77877899999999999999999999999999987544
Q ss_pred HHH--HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHH
Q psy12713 347 EAE--LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT 424 (551)
Q Consensus 347 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (551)
... ....+
T Consensus 294 ~~~~~~~~~~---------------------------------------------------------------------- 303 (378)
T 3q15_A 294 RSHKFYKELF---------------------------------------------------------------------- 303 (378)
T ss_dssp TCCSCHHHHH----------------------------------------------------------------------
T ss_pred cCCHHHHHHH----------------------------------------------------------------------
Confidence 211 00000
Q ss_pred hhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC---hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHH
Q psy12713 425 SILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD---FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE 501 (551)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 501 (551)
......+...++ +.+|+..+++. ...|....++..+|.+|...|++++
T Consensus 304 ----------------------------~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 304 ----------------------------LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQ 354 (378)
T ss_dssp ----------------------------HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHH
Confidence 000011222234 78888888873 3445667888999999999999999
Q ss_pred HHHHHHHHhhcCC
Q psy12713 502 ALRNLDKTIALNP 514 (551)
Q Consensus 502 A~~~~~~al~~~p 514 (551)
|+.+|++++++..
T Consensus 355 A~~~~~~al~~~~ 367 (378)
T 3q15_A 355 AAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=1.7e-21 Score=197.51 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175 (551)
Q Consensus 96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 175 (551)
.+++++..+|.++..+|++++|+..|+++++++|++ ..++.++|.++..+| ++++|+..|+++++++|+++.++.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 388999999999999999999999999999999888 456777999999999 999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
++|.++..+|++++|+..|+++++++|++..++.++|.++... |++++|+..|+++++++|+++.++.++|.++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~------g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS------GNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 9999999999999999999999999999999999999888777 9999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCC
Q psy12713 256 VDQEDFDGAEEYFNRSIRVDP 276 (551)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~ 276 (551)
...|++++|++.+++++++.|
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhCh
Confidence 999999999999998887644
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.5e-20 Score=169.37 Aligned_cols=205 Identities=16% Similarity=0.183 Sum_probs=172.0
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
..++..++..|..++..|+|++|+..|++++...|.++....+++.+|.+++..|++++|+..|+++++..|+++.. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-PQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh-HH
Confidence 34789999999999999999999999999999999844449999999999999999999999999999999987654 56
Q ss_pred HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHhCCHHHHHH
Q psy12713 138 AHIKRAVVHLH--------AASDFTKAFADLDEAEKVDPNVADSY-----------------YQRGQIYCLFGQYEEALR 192 (551)
Q Consensus 138 ~~~~la~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~la~~~~~~~~~~~A~~ 192 (551)
+++.+|.++.. .| ++++|+..|++++..+|+++.+. +.+|.+|...|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQT-DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCH-HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 88999999999 99 99999999999999999987766 788999999999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHh-hc---CCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHH
Q psy12713 193 NLDKTIALNPN---FHVARAQRHFVVHKM-IV---PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFD 262 (551)
Q Consensus 193 ~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~---~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~ 262 (551)
.|+++++..|+ ...++..+|.++... .. ....|++++|+..|+++++.+|+++ .+...++.++...++++
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999998887 456788888777644 11 1133788888888888888888874 45556666666666655
Q ss_pred HH
Q psy12713 263 GA 264 (551)
Q Consensus 263 ~A 264 (551)
++
T Consensus 250 ~~ 251 (261)
T 3qky_A 250 GD 251 (261)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=185.53 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=162.2
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-----CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-----SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--- 128 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 128 (551)
....+..++..|..+...|++++|+..++++++... ..+....++..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888877621 224566777778888888888888888888887763
Q ss_pred --CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 129 --SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 129 --~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
+++ .....++..+|.++...| ++++|+..+++++... |....++..+|.++...|++++|+.++++++
T Consensus 103 ~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 103 LGKDH-PAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HCTTC-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hCCCC-hHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 223556677777777777 7777777777777653 3345566677777777777777777777666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---
Q psy12713 199 ALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--- 275 (551)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 275 (551)
...... . + ...|....++..+|.++...|++++|+..++++++..
T Consensus 181 ~~~~~~----------------~---~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 181 EIYQTK----------------L---G-------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHT----------------S---C-------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------h---C-------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 551000 0 0 0023334556667777777777777777777776542
Q ss_pred ------CCCHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 276 ------PENASLYVHRAMLM-----LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 276 ------~~~~~~~~~l~~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
+.....+...+... ....+.+.+|...+.++....|..+.++..+|.++...|++++|+.+|++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 22222232222221 1225666777778888888888888899999999999999999999999998887
Q ss_pred cC
Q psy12713 345 RD 346 (551)
Q Consensus 345 ~~ 346 (551)
|+
T Consensus 309 ~~ 310 (311)
T 3nf1_A 309 KQ 310 (311)
T ss_dssp C-
T ss_pred hc
Confidence 65
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=6.2e-19 Score=181.91 Aligned_cols=357 Identities=13% Similarity=0.048 Sum_probs=257.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC---ch----------------hHHHHHHH---------HHHHHHHh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS---NH----------------TKALARLL---------RATVYIFT 111 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---~~----------------~~~~~~~~---------la~~~~~~ 111 (551)
+++.--..+..+...|++.+|++.+++++ ..|. +. ....-+.. +|.++...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 34445566778889999999999999998 3343 10 01111111 37788888
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
|.+++|...|+++-. . .. .+...+...+ ++++|+++++++ +.+.+|+.+|.++...|++++|+
T Consensus 1063 glyEEAf~IYkKa~~----~----~~---A~~VLie~i~-nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV----N----TS---AVQVLIEHIG-NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred CCHHHHHHHHHHcCC----H----HH---HHHHHHHHHh-hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 888999998888631 1 11 1233344778 889988888865 56889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271 (551)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 271 (551)
..|.++ +++..+..++.++... |++++|++++..+.+..++ +.+...+|.+|.+.+++++ ++.|.
T Consensus 1126 dsYiKA-----dD~say~eVa~~~~~l------GkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-- 1190 (1630)
T 1xi4_A 1126 DSYIKA-----DDPSSYMEVVQAANTS------GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-- 1190 (1630)
T ss_pred HHHHhc-----CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH--
Confidence 999775 7788888888777777 9999999999999887744 2233458888888888885 44442
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
...+...+..+|..++. .|++++|..+|.++ ..|..+|.++.+.|++++|++.++++.. ...|
T Consensus 1191 ---~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-----~~aW 1253 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----TRTW 1253 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----HHHH
Confidence 23344567789998777 99999999999985 4889999999999999999999999943 2333
Q ss_pred HHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCC
Q psy12713 352 HIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSND 431 (551)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (551)
...............+. .. .+.
T Consensus 1254 kev~~acve~~Ef~LA~-----------------------~c--------------------------------gl~--- 1275 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQ-----------------------MC--------------------------------GLH--- 1275 (1630)
T ss_pred HHHHHHHhhhhHHHHHH-----------------------HH--------------------------------HHh---
Confidence 32222211111111110 00 000
Q ss_pred ccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHH--hcCHHHHHHHHHHH
Q psy12713 432 YEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL--FGQYEEALRNLDKT 509 (551)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~a 509 (551)
+. . ....+......|...|.|++|+.+++.++.++|.+...+..+|.+|.+ -++..++++.|...
T Consensus 1276 Ii---v----------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1276 IV---V----------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred hh---c----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 00 0 000111122225667999999999999999999999999888888864 67899999999999
Q ss_pred hhcCC-----chHHHHHHHHHHHHHhhhhhhhh
Q psy12713 510 IALNP-----NFHVARAQRHFVWTSTLAELMAF 537 (551)
Q Consensus 510 l~~~p-----~~~~a~~~l~~~~~~~~~~~~a~ 537 (551)
+.+.| ++...|..+..+|.+.|+...|+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99988 89999999999999999888887
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=5.2e-19 Score=168.50 Aligned_cols=278 Identities=13% Similarity=0.077 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc--hhHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP--KIKV 136 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 136 (551)
.......|..++..|++++|+..+++++...|.. .....++..+|.++...|++++|+..+++++...|... ....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4567788999999999999999999999988753 12345788999999999999999999999998765433 3334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---- 204 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---- 204 (551)
.++..+|.++...| ++++|+..+++++... |....++..+|.++...|++++|...+++++...+..
T Consensus 94 ~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 56788999999999 9999999999999864 3335677889999999999999999999999987753
Q ss_pred -HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--c-HHHH----HHHHHHHHhccCHHHHHHHHHHHHhcCC
Q psy12713 205 -HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--V-VEAC----TLFAQVLVDQEDFDGAEEYFNRSIRVDP 276 (551)
Q Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~~ 276 (551)
...+..++.++... |++++|...+++++...+. . .... ...+.++...|++++|...+++++...|
T Consensus 173 ~~~~~~~la~~~~~~------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 173 QLQCLAMLIQCSLAR------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp GHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 34566777777776 9999999999999876322 2 1111 1345668899999999999999998776
Q ss_pred CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 277 EN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 277 ~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
.. ...+..++.++.. .|++++|...+++++...+.. ..++..+|.++...|++++|...+++++.+.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQIL-LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 53 2356788888777 999999999999998765432 357888999999999999999999999987653
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=4.3e-19 Score=159.95 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=208.2
Q ss_pred chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH----HHh---C
Q psy12713 114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIY----CLF---G 185 (551)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~ 185 (551)
.++|+..+.+++.++|++ ..+|...+.++...+ .++++++..++.++..+|++..+|..++.++ ... +
T Consensus 49 s~~aL~~t~~~L~~nP~~----~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINELASH----YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHCcHH----HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 358999999999999998 557777999998877 6899999999999999999999999999999 767 7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC---
Q psy12713 186 QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE--QSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--- 260 (551)
Q Consensus 186 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--- 260 (551)
++++++.++.++++.+|.+..+|..++.+.... |.++ ++++.+.++++.+|.+..+|...+.++...|.
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l------~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF------DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 899999999999999999999999999888877 7777 99999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---cCCHHHHHHHHHHHHHhCCHHHH
Q psy12713 261 ---FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE-AIKLIEKAISID---KSCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 261 ---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 333 (551)
++++++++.+++..+|++..+|..++.++-. .|+... ...++.+++..+ |.++.++..++.++.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999999999999999999998555 777444 556777777766 88999999999999999999999
Q ss_pred HHHHHHhcc-cccCHHHHHHHH
Q psy12713 334 VKCFNKALP-LARDEAELSHIY 354 (551)
Q Consensus 334 ~~~~~~a~~-~~~~~~~~~~~~ 354 (551)
+++|+.+.+ .+|-....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 999999996 799988877654
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=1e-19 Score=163.85 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---HVARA 209 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~ 209 (551)
...++.+|..+...| ++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++..|++ ..+++
T Consensus 15 ~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 446677888888888 8888888888888888888 7888888888888888888888888888887744 56677
Q ss_pred HHHHHHHHh--hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713 210 QRHFVVHKM--IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287 (551)
Q Consensus 210 ~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 287 (551)
.+|.+++.. ..+...|++++|+..|++++..+|+++.+...+..+....++. ...++.+|.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL-----------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 788777761 1222238888888888888888887765543332222111111 122567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 288 LMLQARGNVDEAIKLIEKAISIDKS---CMFAYETLGTIEVQR----------GRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 288 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
+++. .|++++|+..|+++++..|+ .+.++..+|.++... |++++|+..|+++++..|+++......
T Consensus 157 ~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 157 LYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7666 77777777777777777776 355777777777766 777778888887777777776544433
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=1.2e-19 Score=172.94 Aligned_cols=245 Identities=14% Similarity=0.155 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc---hhHHH
Q psy12713 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP---KIKVN 137 (551)
Q Consensus 64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 137 (551)
++.+|..++..|++++|+..|++++...+ +.+..+.++..+|.++...|++++|+.++++++...+... .....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455555555555555555555554421 1123445555555555555555555555555555433221 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 211 (551)
++..+|.++...| ++++|+..+++++...+. ...++.++|.+|..+|++++|+.++++++.+.+.
T Consensus 184 ~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-------- 254 (378)
T 3q15_A 184 SLFVIAGNYDDFK-HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE-------- 254 (378)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------
Confidence 4455555555555 555555555555543211 1234444555555555555555555444432100
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----CHHHHHHHH
Q psy12713 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----NASLYVHRA 286 (551)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~ 286 (551)
..+|..+.++..+|.++...|++++|+.+++++++..+. ....+..++
T Consensus 255 ---------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 255 ---------------------------KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp ---------------------------HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred ---------------------------hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 045666777888888888888888888888888877432 233445566
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 287 MLMLQARGN---VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 287 ~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
.++.. .++ +.+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++....
T Consensus 308 ~ly~~-~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 308 AVYKE-TVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHSS-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 66444 677 77788777762 233444667788999999999999999999998887543
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=9.8e-20 Score=166.55 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhhcCCChhH
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN------FHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
+++|+..|+++ |.+|...|++++|+.+|++++.+.+. ...++..+|.++... |+
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~------g~ 92 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG------GN 92 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC------CC
Confidence 66666666655 44555666666666666666655321 123444555444444 55
Q ss_pred HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc
Q psy12713 227 VEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQAR 293 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 293 (551)
+++|+.++++++.+.|.. ..++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++.. .
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~ 171 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-D 171 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-h
Confidence 555555555555544322 34677888888885 88888888888888876644 3567778888666 8
Q ss_pred CCHHHHHHHHHHHHhcCcCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 294 GNVDEAIKLIEKAISIDKSCMF-------AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
|++++|+.+|+++++..|++.. ++..+|.++...|++++|+.+|++++.++|+...
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 8888888888888888776543 5677888888888888888888888888776543
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1e-19 Score=166.38 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--CchhHHHHHHHHHHHHHHhcCCH
Q psy12713 76 DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 76 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
++++|+..|.++ |.++...|++++|+..|++++.+.+. ++.....++..+|.++...| ++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NS 93 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC-CH
Confidence 366666666654 56778889999999999999887532 33334668888999999999 99
Q ss_pred HHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 154 TKAFADLDEAEKVDPNV------ADSYYQRGQIYCLF-GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.....
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~------------------- 154 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------------------- 154 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh-------------------
Confidence 99999999999887643 45778888888885 88888888888888776533100
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcCCHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-------LYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~A 299 (551)
. ....++..+|.++...|++++|+..|+++++..|++.. .+..+|.++.. .|++++|
T Consensus 155 -~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A 218 (292)
T 1qqe_A 155 -A--------------LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAA 218 (292)
T ss_dssp -H--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHH
T ss_pred -H--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHH
Confidence 0 00234555666666666666666666666666555432 34556666555 6666666
Q ss_pred HHHHHHHHhcCcCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 300 IKLIEKAISIDKSCMF-----AYETLGTIEV--QRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|....+.
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 6666666666665433 2333444443 34567777777777777777665443
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.2e-20 Score=175.01 Aligned_cols=320 Identities=11% Similarity=0.036 Sum_probs=160.8
Q ss_pred HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS 151 (551)
Q Consensus 72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 151 (551)
-..|+.++|..++++. + .+.+|..+|.++...|++++|++.|.++ .+ ..++...+..+...|
T Consensus 14 ~~~~~ld~A~~fae~~----~----~~~vWs~La~A~l~~g~~~eAIdsfika-----~D----~~~y~~V~~~ae~~g- 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC----N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSG- 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC----C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC----HHHHHHHHHHHHhCC-
Confidence 3678899999999987 2 4569999999999999999999999774 22 225566888999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++ .| +..++..+|..++.. |.+++|.
T Consensus 76 ~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~------g~yeeA~ 142 (449)
T 1b89_A 76 NWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDE------KMYDAAK 142 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-----CC-----------------------CTTTHH
T ss_pred CHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHc------CCHHHHH
Confidence 999999999999886444 7788899999999999999888775 24 345888888555555 9999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
.+|.++ ..|..+|.++.+.|++++|++.++++ .++.+|.....++.. .|+++.|..+... +...|
T Consensus 143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~a 207 (449)
T 1b89_A 143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHA 207 (449)
T ss_dssp HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCH
T ss_pred HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCH
Confidence 999976 46889999999999999999999999 478899998888787 9999999887775 33444
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI 391 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 391 (551)
+ -...++.+|.+.|++++|+.++++++.+++.+..++..++....
T Consensus 208 d---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~-------------------------------- 252 (449)
T 1b89_A 208 D---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS-------------------------------- 252 (449)
T ss_dssp H---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH--------------------------------
T ss_pred h---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--------------------------------
Confidence 4 45568899999999999999999999999888776555432200
Q ss_pred HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHh
Q psy12713 392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD 471 (551)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 471 (551)
-+.-++..++++.
T Consensus 253 -------------------------------------------------------------------ky~p~k~~ehl~~ 265 (449)
T 1b89_A 253 -------------------------------------------------------------------KFKPQKMREHLEL 265 (449)
T ss_dssp -------------------------------------------------------------------TTCHHHHHHHHHH
T ss_pred -------------------------------------------------------------------hcCHHHHHHHHHH
Confidence 1112456677777
Q ss_pred hHHhhccCC-----CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc------------CCchHHHHHHHHHHHHHhhhhh
Q psy12713 472 LDEAEKVDP-----NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL------------NPNFHVARAQRHFVWTSTLAEL 534 (551)
Q Consensus 472 ~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~p~~~~a~~~l~~~~~~~~~~~ 534 (551)
|...+.+.| +++..|..+..+|..-++|+.|+...-..... .+.|.+.++.....|. +..-
T Consensus 266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p 343 (449)
T 1b89_A 266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKP 343 (449)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCG
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCH
Confidence 777777777 67888888888888888888888877666554 6777887777777776 3333
Q ss_pred hhhhhhc
Q psy12713 535 MAFSDEF 541 (551)
Q Consensus 535 ~a~~~~~ 541 (551)
..+.+.+
T Consensus 344 ~~l~~ll 350 (449)
T 1b89_A 344 LLLNDLL 350 (449)
T ss_dssp GGHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.5e-19 Score=184.78 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=166.8
Q ss_pred hcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHh--------hcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 89 ESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV--------EDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL 160 (551)
Q Consensus 89 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~ 160 (551)
..+|+ ++.+++..| ...|++++|+..+++++ +.+|++.. +++.+|.++...| ++++|+..|
T Consensus 388 ~~~p~---~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g-~~~~A~~~~ 456 (681)
T 2pzi_A 388 LVDPT---DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE----LPLMEVRALLDLG-DVAKATRKL 456 (681)
T ss_dssp CCCTT---STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH----HHHHHHHHHHHHT-CHHHHHHHH
T ss_pred cCCCC---CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh----HHHHHHHHHHhcC-CHHHHHHHH
Confidence 44565 666777666 78899999999999999 88888754 5666999999999 999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713 161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 240 (551)
+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++... |++++ +..|+++++.
T Consensus 457 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 457 DDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA------GNTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------TCCCT-TCHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------CChHH-HHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888888 99999 9999999999
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
+|+++.+++++|.++...|++++|+..|+++++++|++..++.++|.+++. .++
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~-~~~ 583 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS-GRS 583 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc-cCC
Confidence 999999999999999999999999999999999999999999999998655 454
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=4.8e-18 Score=161.80 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---- 171 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 171 (551)
...++..+|.++...|++++|+..+++++...|.+. .....++..+|.++...| ++++|...+++++...|...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHH
Confidence 467788899999999999999999999999877654 334557888999999999 99999999999998765443
Q ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC
Q psy12713 172 --DSYYQRGQIYCLFGQYEEALRNLDKTIALN--------PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH 241 (551)
Q Consensus 172 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 241 (551)
.++..+|.++...|++++|+..+++++... |.....+..++.++... |++++|...+++++...
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW------ARLDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999874 23345666788777777 99999999999999987
Q ss_pred CC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 242 SN-----VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYV-----HRAMLMLQARGNVDEAIKLIEKAISI 309 (551)
Q Consensus 242 ~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~~~~~ 309 (551)
+. ...++..+|.++...|++++|...+++++...+ ..+..+. ..+.++.. .|++++|...+++++..
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-TGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHSCCC
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-CCCHHHHHHHHHhCCCC
Confidence 65 346788999999999999999999999987632 2221221 23344556 89999999999999887
Q ss_pred CcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 310 DKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 310 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
.|.. ...+..+|.++...|++++|...+++++...+
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6643 33578899999999999999999999887643
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=8e-20 Score=186.78 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=171.1
Q ss_pred HHhcCCHHHHHHHHHHHH--------hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 147 LHAASDFTKAFADLDEAE--------KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
...| ++++|+..+++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 402 ~~~~-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLS-QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTC-CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccc-CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 6788 9999999999999 889999999999999999999999999999999999999999999999988888
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++++|.++.. .|++++
T Consensus 481 ------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~ 552 (681)
T 2pzi_A 481 ------GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-EGDRVG 552 (681)
T ss_dssp ------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred ------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-cCCHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999777 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHhcccccC
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGR--------LEEAVKCFNKALPLARD 346 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~ 346 (551)
|+..|+++++.+|++..++.++|.++...|+ +++|...+.......|.
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999999999999999999999999977655 55555555554433344
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=3.6e-19 Score=151.22 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 251 (551)
..+..+|.++...|++++|+..+++++...|.+...+..++.++... |++++|+..+++++...|.++.++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT------GAVDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34445555555555555555555555555555555555555555444 555555555555555556666666666
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|.++...|++++|+..+++++...|+++.++..+|.++.. .|++++|+.+++++++..|.++.++..+|.++...|+++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666666666666666666666555 677777777777777766666667777777777777777
Q ss_pred HHHHHHHHhcccccCH
Q psy12713 332 EAVKCFNKALPLARDE 347 (551)
Q Consensus 332 ~A~~~~~~a~~~~~~~ 347 (551)
+|..+++++++..|++
T Consensus 162 ~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 162 EALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCc
Confidence 7777777776666654
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=1.9e-19 Score=155.58 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
.++..|..+...| ++++|+..|++++..+|+++.+++..+. ... ....+.....+|.++..
T Consensus 6 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 6 EMLQKVSAAIEAG-QNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHHHH
Confidence 3445666666666 6666666666666666665555544221 000 00001122237777776
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--C
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--N 295 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 295 (551)
. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+++. .| +
T Consensus 67 ~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~ 139 (208)
T 3urz_A 67 N------RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL-TAEQE 139 (208)
T ss_dssp T------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred C------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HhHHH
Confidence 6 8888888888888888888888888899999999999999999999999999999999999888765 44 3
Q ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
...+...+.+++...|. ..+++.+|.++...|++++|+.+|++++++.|+..
T Consensus 140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 45667777777654332 34677889999999999999999999999999854
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=6.3e-19 Score=149.70 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
...+..+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAG-RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344555666666666 6666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
... |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.. .|+
T Consensus 87 ~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~ 159 (186)
T 3as5_A 87 VQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-MGR 159 (186)
T ss_dssp HHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred HHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCC
Confidence 555 6666666666666666666666666666666666666666666666666666666666666666555 666
Q ss_pred HHHHHHHHHHHHhcCcCC
Q psy12713 296 VDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~ 313 (551)
+++|..+++++++..|++
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 666666666666666554
No 86
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.5e-17 Score=171.87 Aligned_cols=317 Identities=16% Similarity=0.109 Sum_probs=196.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
.|..+...|.|++|..+|+++- . ...+ +...+...|++++|+++++++ +. ..+|+.+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~-----~~~A---~~VLie~i~nldrAiE~Aerv-----n~----p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--V-----NTSA---VQVLIEHIGNLDRAYEFAERC-----NE----PAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--C-----HHHH---HHHHHHHHhhHHHHHHHHHhc-----CC----HHHHHHHHHHH
Confidence 3899999999999999999863 1 1111 122233667777777777755 12 23556677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
...| ++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .....++.++.+. ++
T Consensus 1116 l~~G-~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl------~r 1182 (1630)
T 1xi4_A 1116 LQKG-MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKT------NR 1182 (1630)
T ss_pred HhCC-CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhh------cC
Confidence 7777 777777777664 667777777777777777777777777777665332 1222355444444 55
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
+++ ++.|. ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++.+ .|++++|++.++++
T Consensus 1183 lee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-Lge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1183 LAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-LGEYQAAVDGARKA 1247 (1630)
T ss_pred HHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-hCCHHHHHHHHHHh
Confidence 553 22221 122 2334445666666666666666666664 355566666555 66666666666655
Q ss_pred HhcCc-------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH
Q psy12713 307 ISIDK-------------------------SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361 (551)
Q Consensus 307 ~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (551)
....+ .+++.+..++..|...|.+++|+.++++++.++|.+..++..++....
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya-- 1325 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS-- 1325 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH--
Confidence 21110 123344456666666677777777777676666665554433322200
Q ss_pred HHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcch
Q psy12713 362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTK 441 (551)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (551)
T Consensus 1326 -------------------------------------------------------------------------------- 1325 (1630)
T 1xi4_A 1326 -------------------------------------------------------------------------------- 1325 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCC-----CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc----
Q psy12713 442 TIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP-----NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL---- 512 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 512 (551)
-+.-++..++++.|...+.+.| +++..|..+..+|.+-|+++.|+...-.....
T Consensus 1326 -----------------Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1326 -----------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred -----------------hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 1122567778888888877776 67888999999999999999998544444333
Q ss_pred --------CCchHHHHHHHHHHHHH
Q psy12713 513 --------NPNFHVARAQRHFVWTS 529 (551)
Q Consensus 513 --------~p~~~~a~~~l~~~~~~ 529 (551)
.+.|++.++....-|..
T Consensus 1389 ~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1389 GQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHh
Confidence 67788888887777764
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=5.3e-19 Score=152.79 Aligned_cols=186 Identities=14% Similarity=0.103 Sum_probs=140.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++.++.+|..++..|++++|+..|++++..+|+ ++.+++..+. .. .........
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~-----~~-----------------~~~~~~~~~ 57 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNV-----DK-----------------NSEISSKLA 57 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHS-----CT-----------------TSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhh-----cc-----------------hhhhhHHHH
Confidence 5788999999999999999999999999999998 8887776431 10 111112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+++..
T Consensus 58 ~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~- 135 (208)
T 3urz_A 58 TELALAYKKNR-NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT- 135 (208)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence 45888888888 8888888888888888888888888888888888888888888888888888888888888777655
Q ss_pred cCCChhH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713 220 VPGDRER--VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 220 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (551)
|+ ...+...+.+++...| ...+++.+|.++...|++++|+..|+++++++|+.
T Consensus 136 -----~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 -----AEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----HHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----hHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 43 4456666666653222 23456778888888888999999999998888874
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=1.2e-18 Score=152.74 Aligned_cols=196 Identities=10% Similarity=0.050 Sum_probs=156.5
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
++..++.+|..++..|+|++|+..|++++...|.++....+++.+|.+++..|++++|+..|+++++..|+++.. ..++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~-~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-HHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-HHHH
Confidence 567899999999999999999999999999998755567899999999999999999999999999999998764 4577
Q ss_pred HHHHHHHHH------------------hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713 140 IKRAVVHLH------------------AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201 (551)
Q Consensus 140 ~~la~~~~~------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 201 (551)
+.+|.++.. .| ++++|+..|+++++.+|+++.++..+..+....+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH--------------
Confidence 888988876 45 677777777777777777665443222211111100
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (551)
......+|.+++.. |++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++....|++
T Consensus 147 ---~~~~~~~a~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTER------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHc------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 11224567777777 999999999999999998875 999999999999999999999999999888876
Q ss_pred HH
Q psy12713 279 AS 280 (551)
Q Consensus 279 ~~ 280 (551)
..
T Consensus 218 ~~ 219 (225)
T 2yhc_A 218 LE 219 (225)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=2.7e-20 Score=151.35 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
+|.++...| ++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...
T Consensus 3 LG~~~~~~~-~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--- 78 (150)
T 4ga2_A 3 LGSMRRSKA-DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE--- 78 (150)
T ss_dssp ----CCCHH-HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred hHHHHHHcC-hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 444444555 5555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHH-HHHHHhcCCCCHHHHHHHHHH
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY-FNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~ 288 (551)
|++++|+..|+++++.+|+++.++..+|.++...|++++|... ++++++++|+++.++..++.+
T Consensus 79 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 79 ---ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4444555555544444444444444444444444444443332 244444444444444444444
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=4.7e-20 Score=149.94 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=91.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
||.++...|++++|+..+++++...|+++..++.+|.+++.. |++++|+..|+++++.+|+++.++..+|.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA------KEYDLAKKYICTYINVQERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666655 66666666666666666666666666666666
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL-IEKAISIDKSCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (551)
..|++++|+..|+++++++|+++.++..+|.++.. .|++++|... ++++++++|+++.++..++.++...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666666666666666666666666666555 6666554443 466666666666666666666665553
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.7e-18 Score=150.46 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh---H
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD---S 173 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 173 (551)
.+..++.+|..++..|++++|+..|++++...|.++.. ..+++.+|.++...| ++++|+..|+++++.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-QQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 45788999999999999999999999999998876543 457788999999999 999999999999999998864 7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 253 (551)
++.+|.++...|.. .+ ..+..++ ..+...|++++|+..|+++++.+|+++.++..+..
T Consensus 81 ~~~~g~~~~~~~~~-----~~-----------~~~~~~~------~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~ 138 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL-----------QGFFGVD------RSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR 138 (225)
T ss_dssp HHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh-----------hhhhccc------hhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 88999998876632 11 1122223 34445589999999999999999888755433222
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH---HHHHHHHHHHHHhCCH
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM---FAYETLGTIEVQRGRL 330 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 330 (551)
+....+. .......+|.+++. .|++++|+..|+++++..|+++ .++..+|.++..+|++
T Consensus 139 l~~~~~~-----------------~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 139 LVFLKDR-----------------LAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHH-----------------HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 2111110 11233567888777 8999999999999999888875 6788999999999999
Q ss_pred HHHHHHHHHhcccccCHH
Q psy12713 331 EEAVKCFNKALPLARDEA 348 (551)
Q Consensus 331 ~~A~~~~~~a~~~~~~~~ 348 (551)
++|+..++++....|++.
T Consensus 201 ~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHhhCCCch
Confidence 999999998888877654
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=6.8e-17 Score=146.16 Aligned_cols=233 Identities=10% Similarity=0.072 Sum_probs=168.8
Q ss_pred HhCCch-HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713 110 FTSQST-KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD----------FTKAFADLDEAEKVDPNVADSYYQRG 178 (551)
Q Consensus 110 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la 178 (551)
..|++. +|+..+.+++..+|++ ..+|...+.++...+ . +++++.+++.++..+|.+..+|..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~Rr~iL~~l~-~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDF----ATLWNCRREVLQHLE-TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHhc-ccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345554 5677777777777766 345555666666555 4 57778888888888888888888888
Q ss_pred HHHHHhCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 179 QIYCLFGQ--YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER-VEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 179 ~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
.++...|. +++++.++.++++.+|.+..+|..++.+.... |. ++++++++.+++..+|.+..+|..++.++
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l------~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 88877773 77888888888888888888888777776665 65 57788888888888888888888887777
Q ss_pred Hhc--------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCc
Q psy12713 256 VDQ--------------EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR----------GNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 256 ~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~A~~~~~~~~~~~~ 311 (551)
... +.++++++++.+++..+|++..+|+.+..++.... +.++++++.++++++..|
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 766 45778888888888888888888876555534422 347888888888888888
Q ss_pred CCHHHHHHHHHHHH---HhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 312 SCMFAYETLGTIEV---QRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 312 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
++...+..++.+.. ..|..++...++.+.++++|-...-+.-
T Consensus 270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 88555444443332 2567788888999999888887665443
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=6.2e-17 Score=146.44 Aligned_cols=247 Identities=12% Similarity=0.024 Sum_probs=210.3
Q ss_pred HHhhhcHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC----------chHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 71 AFEHEDYL-TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ----------STKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 71 ~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
....|++. +|+..+.+++..+|+ +..+|..++.++...|. +++++..++.++..+|.+ ..+|
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn----y~aW 111 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTW 111 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC----HHHH
Confidence 34567775 799999999999999 99999999999988776 689999999999999999 4566
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASD--FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 140 ~~la~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
...+.++...+ + +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++.
T Consensus 112 ~hR~wlL~~l~-~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 112 HHRCWLLSRLP-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHCS-SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 77999999888 6 8999999999999999999999999999999998 699999999999999999999999998877
Q ss_pred Hhhc--------CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHhcCCC
Q psy12713 217 KMIV--------PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-----------EDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 217 ~~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~ 277 (551)
.... ....+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 5511 11237899999999999999999999998777666665 5688999999999999999
Q ss_pred CHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713 278 NASLYVHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325 (551)
Q Consensus 278 ~~~~~~~l~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (551)
+...+..++.+. +...|..++...++.+.++++|....-|..++.-+.
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 966555444331 123578899999999999999998777776665443
No 94
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=8e-20 Score=169.41 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..|..+|..+...|++++|+..|.++ + ++..+...+.++...|++++|+.+++.+.+..++ +.+ .
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika----~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i----~ 97 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYV----E 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chh----H
Confidence 4578999999999999999999999764 2 5568899999999999999999999999885433 332 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..++.+|.+.| ++.++.++++ .| +..+|..+|..+...|.|++|..+|.++ ..+..++.++.++
T Consensus 98 ~~Li~~Y~Klg-~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L- 161 (449)
T 1b89_A 98 TELIFALAKTN-RLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL- 161 (449)
T ss_dssp ------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT-
T ss_pred HHHHHHHHHhC-CHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh-
Confidence 44899999999 9999988775 24 4469999999999999999999999987 3577888888887
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
|++++|++.++++ .++.+|...+.++...|+++.|..+... +..+|+. ...+...|. +.|++++|
T Consensus 162 -----g~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Ye-k~G~~eEa 226 (449)
T 1b89_A 162 -----GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQ-DRGYFEEL 226 (449)
T ss_dssp -----TCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHH-HTTCHHHH
T ss_pred -----ccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHH-HCCCHHHH
Confidence 9999999999999 4789999999999999999999877765 3344443 445666654 49999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHH--hCCHHHHHHHHHHhccccc
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQ--RGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~ 345 (551)
+.++++++..++.+...+..+|.+|.+ .++..+.++.|...+.+.|
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999998875 4566677777776666654
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=5.6e-19 Score=161.16 Aligned_cols=200 Identities=16% Similarity=0.202 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL------- 200 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------- 200 (551)
..++..+|.++...| ++++|+..+++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 43 ~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 334444555555555 555555555554443 1223344455555555555555555555555544
Q ss_pred -CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713 201 -NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271 (551)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 271 (551)
.|....++..+|.++... |++++|+..+++++.. .|....++..+|.++...|++++|+..++++
T Consensus 122 ~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233344444444444433 5555555555555554 4445667788888888888888888888888
Q ss_pred Hhc---------CCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713 272 IRV---------DPENASLYVHRAMLMLQARGN------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336 (551)
Q Consensus 272 ~~~---------~~~~~~~~~~l~~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 336 (551)
+.. .+.....+...+..... .+. +.++...++......|..+.++..+|.++...|++++|+.+
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 775 34445566666655332 222 44444444444444566678889999999999999999999
Q ss_pred HHHhccc
Q psy12713 337 FNKALPL 343 (551)
Q Consensus 337 ~~~a~~~ 343 (551)
|+++++.
T Consensus 275 ~~~al~~ 281 (283)
T 3edt_B 275 EDCASRN 281 (283)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9998875
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=7.1e-19 Score=160.48 Aligned_cols=225 Identities=13% Similarity=0.108 Sum_probs=175.8
Q ss_pred hhcHHHHHHHHHHHhh-------cCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----CCCchhHHHHHHH
Q psy12713 74 HEDYLTAIRHCTEEIE-------STSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-----SVDPKIKVNAHIK 141 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~ 141 (551)
.|++++|+..|+++++ .++ +..+.++..+|.++...|++++|+..+++++... ++++ ....++..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~ 90 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNN 90 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHH
Confidence 3444455555555444 331 2488999999999999999999999999999874 3333 34678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCCH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--------NPNFH 205 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~~ 205 (551)
+|.++...| ++++|+..+++++.. +|....++..+|.++...|++++|+.++++++.. .|...
T Consensus 91 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 91 LAVLYGKRG-KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999 999999999999988 4666889999999999999999999999999998 66667
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHhccC------HHHHHHHHHH
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT---------HSNVVEACTLFAQVLVDQED------FDGAEEYFNR 270 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~ 270 (551)
.++..+|.++... |++++|+..+++++.. .+.....+...+......+. +..+...++.
T Consensus 170 ~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 170 KTKNNLASCYLKQ------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp HHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 7888999888888 9999999999999986 34445667777777766544 3444444554
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309 (551)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 309 (551)
.....|....++..+|.++.. .|++++|+.+++++++.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRR-QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 444556667789999999777 99999999999999875
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=6.8e-17 Score=146.65 Aligned_cols=228 Identities=13% Similarity=0.070 Sum_probs=152.8
Q ss_pred chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh-C-CHHHH
Q psy12713 114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCLF-G-QYEEA 190 (551)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A 190 (551)
.++|+..+.+++.++|++ ..+|..++.++...| . +++++..++.++..+|++..+|..++.++... + +++++
T Consensus 70 se~AL~lt~~~L~~nP~~----ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAH----YTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 345666666666666665 334555666666665 4 66677777777777777777777777666666 5 66677
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC--
Q psy12713 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE--------QSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-- 260 (551)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 260 (551)
+.++.++++.+|.+..+|..++.+.... |.++ ++++.+.++++.+|.+..+|...+.++...++
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l------~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHF------STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHH------HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHh------ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 7777777777777777777777666555 4444 77778888888888888888888877777775
Q ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----
Q psy12713 261 -----FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV--------------------DEAIKLIEKAISID----- 310 (551)
Q Consensus 261 -----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~A~~~~~~~~~~~----- 310 (551)
++++++++.+++..+|++..+|..+..++.. .|+. ..-.......+...
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH-FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6778888888888888888888776666443 4432 22222222222222
Q ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc-ccccCHHHHHHH
Q psy12713 311 -KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL-PLARDEAELSHI 353 (551)
Q Consensus 311 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~ 353 (551)
+.++.++..++.+|...|+.++|.+.++... +.+|-....|..
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 4668888899999999999999999998876 567766655544
No 98
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=6e-15 Score=147.89 Aligned_cols=399 Identities=6% Similarity=-0.040 Sum_probs=255.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC---chHHHHHHHHHhhcCCCCchhH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ---STKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
.+...|...+......++++.+...|++++...|. ....|...+..-...|+ ++.+...|++++...|.++.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s-- 138 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND-- 138 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC--
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC--
Confidence 36888999999888899999999999999999998 88899999998888898 99999999999998853332
Q ss_pred HHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHhc----CCCChhHHHHHHHHHH---------HhCCHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDF--------TKAFADLDEAEKV----DPNVADSYYQRGQIYC---------LFGQYEEALRNL 194 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~--------~~A~~~~~~~~~~----~~~~~~~~~~la~~~~---------~~~~~~~A~~~~ 194 (551)
...|..........+ +. +.....|++++.. ++....+|........ .+++.+.+...|
T Consensus 139 v~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 139 LSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp HHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 223444444444444 32 3344778887763 6666777777665543 345678899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhc---------CCChhHHHHHHHHHHHHHHh-------CCCc--------------
Q psy12713 195 DKTIALNPNFHVARAQRHFVVHKMIV---------PGDRERVEQSLKEFRNFVDT-------HSNV-------------- 244 (551)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~~~~~-------~~~~-------------- 244 (551)
++++.+-......... ....+...+ -....+++.|...+.+.-.. .|..
T Consensus 218 ~raL~iP~~~~~~~w~-~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQ-RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHTTSCCSSHHHHHH-HHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHhCccHHHHHHHH-HHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 9999753232221111 111111000 00113445555555442111 1111
Q ss_pred -----HHHHHHHHHHHHhcc-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCc
Q psy12713 245 -----VEACTLFAQVLVDQE-------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI-KLIEKAISIDK 311 (551)
Q Consensus 245 -----~~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~~ 311 (551)
...|......-...+ ..+.....|++++...|.++.+|+..+..... .|+.++|. .+|++++...|
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~-~~~~~~a~r~il~rAi~~~P 375 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGE-KNTDSTVITKYLKLGQQCIP 375 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HSCCTTHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhCC
Confidence 234444444333322 12445678999999999999999999998655 88888997 99999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc-----------cC-----------HHHHHHHHhHHHHHHHHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA-----------RD-----------EAELSHIYSLRDAAIAQMKVCER 369 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 369 (551)
.+...|...+.+....|+++.|...|++++... |+ ...+|..+.....-.
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-------- 447 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-------- 447 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc--------
Confidence 999999999999999999999999999998752 32 233444443321110
Q ss_pred hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY 449 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (551)
+....+...+.++.... + ...
T Consensus 448 ---------------~~l~~AR~vf~~A~~~~----------------------------------~----------~~~ 468 (679)
T 4e6h_A 448 ---------------QGLAASRKIFGKCRRLK----------------------------------K----------LVT 468 (679)
T ss_dssp ---------------HCHHHHHHHHHHHHHTG----------------------------------G----------GSC
T ss_pred ---------------CCHHHHHHHHHHHHHhc----------------------------------C----------CCC
Confidence 01112222222211000 0 000
Q ss_pred ccchhhhch-hhh-hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc---hHHHHHHHH
Q psy12713 450 GNLENESGQ-KHA-ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN---FHVARAQRH 524 (551)
Q Consensus 450 ~~~~~~~~~-~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~ 524 (551)
..++...+. -.. .++++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|....
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 001111111 111 245888888888888888888888888888888888888888888888888873 444555544
Q ss_pred HHHHHhhh
Q psy12713 525 FVWTSTLA 532 (551)
Q Consensus 525 ~~~~~~~~ 532 (551)
..-...|+
T Consensus 549 ~fE~~~G~ 556 (679)
T 4e6h_A 549 FFESKVGS 556 (679)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 44444453
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=5.7e-18 Score=132.74 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=93.5
Q ss_pred HHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317 (551)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 317 (551)
..++|+.+..+..+|..+++.|++++|+..|+++++.+|.++.++.++|.+++. .|++++|+..++++++++|+++.++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhHHH
Confidence 346777777888888888888888888888888888888888888888888666 8888888888888888888888888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
..+|.++..+|++++|+..|+++++++|++.++...+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 88888888888888888888888888888877655443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=4.7e-18 Score=142.65 Aligned_cols=161 Identities=10% Similarity=0.016 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
++.+|..+...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+.+....
T Consensus 9 ~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 445777777777 777777777777777777777777777777777777777777777777777 554433332221100
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCCH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 296 (551)
.+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++.. .|+.
T Consensus 87 -----~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~ 160 (176)
T 2r5s_A 87 -----QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-LGQG 160 (176)
T ss_dssp -----HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-HCSS
T ss_pred -----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-hCCC
Confidence 0111224444555555555555555555555555555555555555555444443 2344444444333 4444
Q ss_pred HHHHHHHHHHH
Q psy12713 297 DEAIKLIEKAI 307 (551)
Q Consensus 297 ~~A~~~~~~~~ 307 (551)
++|+..|++++
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 44444444443
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=1.3e-17 Score=130.74 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=95.1
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
+..++|+ .++++..+|..+++.|++++|+..|+++++.+|.++ .++..+|.++..+| ++++|+..+++++++
T Consensus 5 ~a~inP~---~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 5 LAYINPE---LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLM-EFQRALDDCDTCIRL 76 (126)
T ss_dssp --CCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhc-cHHHHHHHHHHHHHh
Confidence 3446666 788888888888888888888888888888888773 45566888888888 888888888888888
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214 (551)
Q Consensus 167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 214 (551)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888888888888877766643
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=1.4e-16 Score=144.63 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-c-CH
Q psy12713 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE-RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-E-DF 261 (551)
Q Consensus 185 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~ 261 (551)
+..++|+..+.+++.++|++..+|..++.++... | .+++++..+..++..+|++..+|...+.++... + ++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l------~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSL------NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344555666666666666666665555555444 4 366666666666666666666666666666665 5 66
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCC----
Q psy12713 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD--------EAIKLIEKAISIDKSCMFAYETLGTIEVQRGR---- 329 (551)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 329 (551)
++++..+.++++.+|.+..+|..++.+.-. .|.++ +++++++++++.+|.+..+|..++.+....++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence 777777777777777777777777776333 55555 77778888888888888888888887777776
Q ss_pred ---HHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 330 ---LEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 330 ---~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
++++++++++++.++|++..+|..+.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 68888888888888888888776543
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=2.2e-17 Score=138.55 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=135.5
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246 (551)
Q Consensus 167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 246 (551)
+|...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++... |++++|+..+++++...| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~------g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET------KQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT------TCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHhhhccC-ChH
Confidence 3455667888888888899999999999999888898888888888888777 889999999998888888 776
Q ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHHHHHHHHH
Q psy12713 247 ACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTI 323 (551)
Q Consensus 247 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 323 (551)
.+...+.+.. ..+...+|+..++++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|+. +.++..+|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 6666554433 33445567888888888899888888889988776 899999999999998888865 5688888999
Q ss_pred HHHhCCHHHHHHHHHHhcc
Q psy12713 324 EVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 324 ~~~~g~~~~A~~~~~~a~~ 342 (551)
+...|+.++|+..|++++.
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 9999999889888888764
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=5.3e-18 Score=136.66 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
+++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++.. .|++++|+..|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYA 94 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence 4555555667788889999999999999999999999999999999999999999999999999777 999999999999
Q ss_pred HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
++++++|+++.+++++|.++...|++++|+..|++++++.|+.+
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999876
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=5.4e-17 Score=147.68 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=130.1
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA 247 (551)
Q Consensus 168 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 247 (551)
|++...+..+|..+...|++++|+..|++++..+|++..++..+|.++... |++++|+..+++++..+|+....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~------g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL------NRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT------TCHHHHHHHHTTSCGGGCSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC------CCHHHHHHHHHhCchhhcchHHH
Confidence 666777777777777777777777777777777777777777777666666 77777777777777777766666
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHH
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEV 325 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 325 (551)
....+..+...++.++|+..+++++..+|+++.+++.+|.++.. .|++++|+..|.++++.+|++ ..++..++.++.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 66666667777788888888888888888888888888888666 888888888888888888877 778888888888
Q ss_pred HhCCHHHHHHHHHHhcc
Q psy12713 326 QRGRLEEAVKCFNKALP 342 (551)
Q Consensus 326 ~~g~~~~A~~~~~~a~~ 342 (551)
..|+.++|...|++++.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 88888888888887764
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=2.6e-16 Score=143.18 Aligned_cols=165 Identities=11% Similarity=0.075 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
...++.+|..+...| ++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+
T Consensus 117 ~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 346677999999999 9999999999999999999999999999999999999999999999999997666666666555
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhc
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQAR 293 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 293 (551)
... ++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++.. .
T Consensus 196 ~~~------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~ 268 (287)
T 3qou_A 196 LXQ------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-L 268 (287)
T ss_dssp HHH------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-H
T ss_pred Hhh------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-c
Confidence 555 888889999999999999999999999999999999999999999999999988 8889999999555 9
Q ss_pred CCHHHHHHHHHHHHh
Q psy12713 294 GNVDEAIKLIEKAIS 308 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~ 308 (551)
|+.++|...|++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999998874
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.2e-16 Score=161.00 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|+
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~A~ 77 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ------QRHAEAA 77 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHH
Confidence 4444444444444444444444444454444445555555555555444444444444444444444 4455555
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---GNVDEAIKLIEKAIS 308 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~~~~ 308 (551)
..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++.. . |++++|...++++++
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555555555554433 4 555555555555555
Q ss_pred cCcCCHHHHH
Q psy12713 309 IDKSCMFAYE 318 (551)
Q Consensus 309 ~~~~~~~~~~ 318 (551)
.+|.+...+.
T Consensus 157 ~~p~~~~~~~ 166 (568)
T 2vsy_A 157 QGVGAVEPFA 166 (568)
T ss_dssp HTCCCSCHHH
T ss_pred cCCcccChHH
Confidence 5544443333
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=2.5e-17 Score=132.75 Aligned_cols=124 Identities=10% Similarity=-0.081 Sum_probs=112.9
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
.+++-.+-..+++++..+|+ ++.+++.+|.+++..|++++|+..|++++..+|+++. +|+.+|.++...| ++
T Consensus 15 l~~~~~~~~~l~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g-~~ 86 (151)
T 3gyz_A 15 VIDAINSGATLKDINAIPDD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKE-QF 86 (151)
T ss_dssp HHHHHHTSCCTGGGCCSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTT-CH
T ss_pred HHHHHHCCCCHHHHhCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc-cH
Confidence 33444455667888999998 9999999999999999999999999999999999954 6677999999999 99
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus 87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999764
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=7.1e-17 Score=148.68 Aligned_cols=222 Identities=14% Similarity=0.141 Sum_probs=134.6
Q ss_pred HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF-TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA 150 (551)
Q Consensus 72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 150 (551)
+..|++++|..+++++.+..+. . ++. .+++++|+..|.++ |.++...|
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~---~----------~~~~~~~~~~A~~~~~~a------------------~~~~~~~g 50 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKT---S----------FMKWKPDYDSAASEYAKA------------------AVAFKNAK 50 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCC---C----------SSSCSCCHHHHHHHHHHH------------------HHHHHHTT
T ss_pred CccchHHHHHHHHHHHHHHccc---c----------ccCCCCCHHHHHHHHHHH------------------HHHHHHcC
Confidence 3578888999999888776553 1 011 35666666665543 44555666
Q ss_pred CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh
Q psy12713 151 SDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HVARAQRHFVVHKM 218 (551)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~ 218 (551)
++++|+..|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++.+.+.. ..++..+|
T Consensus 51 -~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg------ 123 (307)
T 2ifu_A 51 -QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG------ 123 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH------
T ss_pred -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 6777777777666654322 3456666677777777777777777766653221 11222233
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRA 286 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 286 (551)
.++.. |++++|+.+|++++...|.. ..++..+|.++...|++++|+..|++++.+.|.+ ...+..+|
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 33333 66666666666666554322 4567778888888888888888888887765443 23566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCcCCHH-----HHHHHHHHHHHhCCHHHHHH
Q psy12713 287 MLMLQARGNVDEAIKLIEKAISIDKSCMF-----AYETLGTIEVQRGRLEEAVK 335 (551)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 335 (551)
.+++. .|++++|+.+|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 203 ~~~~~-~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLH-RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHH-TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHH-cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77665 788888888888888 7775432 233444444 4566544433
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=4.1e-17 Score=143.10 Aligned_cols=206 Identities=10% Similarity=0.014 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH-
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR-------GQIYCLFGQYEEALRNLDKTIALNPNFHVARA- 209 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~- 209 (551)
.++..|..+ ..+ ++..|...|.+++..+|+.+++|..+ +.++...++..+++..+++.+.+.|.....++
T Consensus 9 ~~~~~~~~~-~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 9 SLFESAVSM-LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHH-TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHhcc-cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 445566665 577 99999999999999999999999999 89999999999999999999998776544333
Q ss_pred --------------------HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 210 --------------------QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 210 --------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
.++.++... |++++|.+.|..++...|++. ..+.+|.++.+.|++++|+..|+
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~------g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQ------GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHH------TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 355556666 999999999999999899888 99999999999999999999999
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--cC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 270 RSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISID--KS-CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 270 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
.+....+.. ..+++.+|.++.. .|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+
T Consensus 160 ~a~~~~d~~~~~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 160 SAGKWPDKFLAGAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HhhccCCcccHHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 887653221 3588999999666 999999999999998654 55 56799999999999999999999999999999
Q ss_pred cCHHHHHHHH
Q psy12713 345 RDEAELSHIY 354 (551)
Q Consensus 345 ~~~~~~~~~~ 354 (551)
|+ ..+...+
T Consensus 239 P~-~~~~~aL 247 (282)
T 4f3v_A 239 PE-PKVAAAL 247 (282)
T ss_dssp CC-HHHHHHH
T ss_pred Cc-HHHHHHH
Confidence 99 7665544
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.7e-17 Score=140.74 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHH-------HHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLR-------ATVYIFTSQSTKAIEDLTQLVEDTSVDP 132 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~~~~~ 132 (551)
.....|..|..+ ..+++..|...|.+++..+|+ ..++|..+ +.++...++..+++..+++.+.+.|..-
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 456678888886 689999999999999999999 99999999 8999999999999999999999877532
Q ss_pred hh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 133 KI-----------------KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195 (551)
Q Consensus 133 ~~-----------------~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 195 (551)
.. .......++.++...| ++++|...|..++...|++. ..+.+|.++.+.+++++|+..|+
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g-~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHT-CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 1234555788888888 99999999988888888777 88888889999999999998888
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 196 KTIALNPNF--HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--SN-VVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 196 ~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
.+....+.. ..+++.+|.++..+ |++++|+..|++++... |. .+++++.+|.++..+|+.++|...|++
T Consensus 160 ~a~~~~d~~~~~~a~~~LG~al~~L------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 160 SAGKWPDKFLAGAAGVAHGVAAANL------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhccCCcccHHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776543211 22444555444444 55555555555554322 32 334555555555555555555555555
Q ss_pred HHhcCCC
Q psy12713 271 SIRVDPE 277 (551)
Q Consensus 271 ~~~~~~~ 277 (551)
++..+|+
T Consensus 234 a~a~~P~ 240 (282)
T 4f3v_A 234 LQTTHPE 240 (282)
T ss_dssp HHHHSCC
T ss_pred HHhcCCc
Confidence 5555555
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=2.8e-16 Score=158.20 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=71.0
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
|++++|+..++++++.+|++ ..++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ------------------CC----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34444444444444444444 223333444444444 4444444444444444444444444444444444444444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---cCHHHHHHHH
Q psy12713 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDFDGAEEYF 268 (551)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~ 268 (551)
..++++++.+|++..++..+|.++... |++++|+..++++++.+|++..++..+|.++... |++++|+..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 444444444444444444444444444 4455555555555555555555555555555555 5555555555
Q ss_pred HHHHhcCCCCHHHHHH
Q psy12713 269 NRSIRVDPENASLYVH 284 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~ 284 (551)
+++++.+|++...+..
T Consensus 152 ~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 152 RAAVAQGVGAVEPFAF 167 (568)
T ss_dssp HHHHHHTCCCSCHHHH
T ss_pred HHHHhcCCcccChHHH
Confidence 5555555554444433
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=1.1e-16 Score=147.35 Aligned_cols=201 Identities=14% Similarity=0.144 Sum_probs=167.1
Q ss_pred HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713 110 FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH-AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188 (551)
Q Consensus 110 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 188 (551)
..|++++|..+++++.+..+.. ++. .+ +++.|+..|.++ |.+|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~--------------~~~~~~-~~~~A~~~~~~a--------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS--------------FMKWKP-DYDSAASEYAKA--------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--------------SSSCSC-CHHHHHHHHHHH--------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHcccc--------------ccCCCC-CHHHHHHHHHHH--------------HHHHHHcCCHH
Confidence 4578889999999988766532 011 46 999999998876 67888999999
Q ss_pred HHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Q psy12713 189 EALRNLDKTIALNPNF------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLV 256 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~ 256 (551)
+|+..|.+++.+.+.. ...+..+|.++... |++++|+.+|++++.+.+. ...++..+|.+|.
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~------g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL------QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999886532 34667777777666 9999999999999987532 2467889999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIE 324 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 324 (551)
. |++++|+.+|++++.+.|.. ..++.++|.++.. .|++++|+.+|++++...|.+ ..++..+|.++
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 9 99999999999999987643 5678899999777 999999999999999986654 34788899999
Q ss_pred HHhCCHHHHHHHHHHhcccccCHH
Q psy12713 325 VQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 325 ~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
...|++++|+.+|++++ +.|+..
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHcCCHHHHHHHHHHHh-CCCCCC
Confidence 99999999999999999 988754
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=1.2e-16 Score=129.32 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=109.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++.. .|++++|+..|++++..+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence 467788888999999999999999999999999999999999999999999999999777 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
+++.+++.+|.++...|++++|+..|++++++.|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999999999999998886654
No 115
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.69 E-value=5.1e-15 Score=131.60 Aligned_cols=259 Identities=12% Similarity=0.096 Sum_probs=197.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++.+| ..+..|-.|+|..++.-.. +..|.+ .....+.+.+++..+|++... .. ..+. ..+.
T Consensus 13 ~~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~--~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~--~~a~ 74 (310)
T 3mv2_B 13 DPMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVT--DNTLLFYKAKTLLALGQYQSQ---------DP-TSKL--GKVL 74 (310)
T ss_dssp --CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCC--CHHHHHHHHHHHHHTTCCCCC---------CS-SSTT--HHHH
T ss_pred CcHHHH-HHHHHHHhhHHHHHHHHHH---hcCccc--hHHHHHHHHHHHHHcCCCccC---------CC-CCHH--HHHH
Confidence 345555 4667788999999998443 333432 234667778889999998752 11 1222 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHFVVHK 217 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 217 (551)
..++..+ .+ + |+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+..+....+.++..
T Consensus 75 ~~la~~~--~~-~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 75 DLYVQFL--DT-K---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHH--TT-T---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cc-c---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 2233332 34 4 88999998887666677788999999999999999999999999887 788888889988888
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPE--NASLYVHRAM 287 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 287 (551)
. |+.+.|.+.++++.+.+|+ .......-|++.+..| ++.+|...|+++.+..|+ .+..+++
T Consensus 149 ~------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--- 219 (310)
T 3mv2_B 149 N------NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--- 219 (310)
T ss_dssp T------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred C------CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence 8 9999999999999999983 2333344455566666 999999999999988887 3334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc----------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 288 LMLQARGNVDEAIKLIEKAISI----------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 288 ~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
++++ +|++++|...++.+++. +|+++.++.+++.+....|+ +|.++++++.+..|+++.+...-
T Consensus 220 ~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 220 LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 6666 99999999999988776 48899999999999999998 89999999999999998765443
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=1.5e-13 Score=137.90 Aligned_cols=403 Identities=9% Similarity=0.008 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC---H
Q psy12713 77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD---F 153 (551)
Q Consensus 77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~ 153 (551)
..+-+..|++.+..+|. +...|..++......+.++.+...|++++...|..... |...+......+ + +
T Consensus 48 ~~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~l----W~~Yi~~E~~~~-~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANI----WCMRLSLEFDKM-EELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTC---CCCH
T ss_pred CHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHhhC-CcchH
Confidence 44567788999999998 99999999999999999999999999999999998554 444777777888 8 9
Q ss_pred HHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCH--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhh
Q psy12713 154 TKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQY--------EEALRNLDKTIAL----NPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~ 219 (551)
+.+...|++++...| .+++.|..........++. +.....|++++.. ++.....|...........
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 999999999999984 6788888887766666553 3344778887753 5666666654432221100
Q ss_pred ---cCCChhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH-------------HhccCHHHHHHHHHHH------Hhc-C
Q psy12713 220 ---VPGDRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVL-------------VDQEDFDGAEEYFNRS------IRV-D 275 (551)
Q Consensus 220 ---~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~-------------~~~~~~~~A~~~~~~~------~~~-~ 275 (551)
.....++.+.+...|++++....... ..|......- ....+|+.|...+... +.. .
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 00123567889999999997532222 2332221111 1123445555555442 111 1
Q ss_pred CCC-----------------HHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713 276 PEN-----------------ASLYVHRAMLMLQARGN--------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL 330 (551)
Q Consensus 276 ~~~-----------------~~~~~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (551)
|.. .........+-+.+... .+.....|++++...|.++..|+..+..+...|+.
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH
Confidence 111 11222223333442221 34567899999999999999999999999999999
Q ss_pred HHHH-HHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713 331 EEAV-KCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG 409 (551)
Q Consensus 331 ~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (551)
++|. ..|++++...|.+..++..++............+.+ ......... ...+.+...
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i------yek~l~~l~---~~~~~~~~~------------ 418 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT------ILSCIDRIH---LDLAALMED------------ 418 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH------HHHHHHHHH---HHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH------HHHHHHHHH---HHhhhhhhc------------
Confidence 9997 999999999999888776665543222111111110 000000000 000000000
Q ss_pred CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhcc-CCCchHHHh
Q psy12713 410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKV-DPNVADSYY 487 (551)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~-~p~~~~~~~ 487 (551)
.|...............++..... ....|..+.|...|.+|++. .+....+|.
T Consensus 419 -------------------------~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 419 -------------------------DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp -------------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred -------------------------cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 000000000000001111111111 23357899999999999988 445577888
Q ss_pred hhhhHHHHhcC-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhh
Q psy12713 488 QRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAE 533 (551)
Q Consensus 488 ~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 533 (551)
..|.+....|+ ++.|...|+++++..|+++..+...+......|+.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 88887777654 99999999999999999999887777766665544
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=3.7e-18 Score=158.91 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=162.1
Q ss_pred HhCCchHHHHHHHH----HhhcCCCCchhHHHHHHHHHHHHH------------HhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713 110 FTSQSTKAIEDLTQ----LVEDTSVDPKIKVNAHIKRAVVHL------------HAASDFTKAFADLDEAEKVDPNVADS 173 (551)
Q Consensus 110 ~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~~ 173 (551)
..+.+++|+..+.. ++.+.|.. ++...|.... .++ ++++|+..+++++...|..+.+
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~------ayg~~g~~~~~i~~~~~l~f~~~L~-~~~~A~~~~~~a~~~~p~~a~~ 149 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY------AFGSVGKEKFQIPPNAELKYELHLK-SFEKAKESWEMNSEEKLEQSTI 149 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT------TTTTTCBGGGTBCSSCCEEEEEEEE-EEECCCCGGGCCHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc------ccCcCCCCccCCCCCCeEEEEEEEe-ecccccchhcCCHHHHHHHHHH
Confidence 34567788888887 77777764 4444555442 456 7778888888888888888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 253 (551)
+..+|.++...|++++|+..|++++.+.|.+... . . .......|....++.++|.
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~--~---------~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------S--N---------EEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------C--S---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------C--h---------HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888875320 0 0 0111222334678999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 333 (551)
++...|++++|+..|+++++++|+++.+++.+|.++.. .|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 99999999999999999999999999999999999999999
Q ss_pred -HHHHHHhccccc
Q psy12713 334 -VKCFNKALPLAR 345 (551)
Q Consensus 334 -~~~~~~a~~~~~ 345 (551)
...|++++...+
T Consensus 284 ~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 284 EKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 567777776543
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=1.1e-15 Score=138.34 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=146.4
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 321 (551)
|.++..+..+|..+...|++++|+..|++++..+|+++.++.++|.++.. .|++++|+..++++++.+|++..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999777 99999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcccccCHHH-----HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhh
Q psy12713 322 TIEVQRGRLEEAVKCFNKALPLARDEAE-----LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396 (551)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 396 (551)
.++...|++++|+..|+++++++|++.. ++..+..... ..+.....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 130 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK-----------------------------KRWNSIEE 130 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHH-----------------------------HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Confidence 9999999999999999999999886531 1111110000 00000000
Q ss_pred chhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhh
Q psy12713 397 NNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAE 476 (551)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 476 (551)
...+.+... ....+. +..|++++|++.+++++
T Consensus 131 ------------------------------------~~~~~~~~i-----------~~~l~~-l~~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 131 ------------------------------------RRIHQESEL-----------HSYLTR-LIAAERERELEECQRNH 162 (281)
T ss_dssp ------------------------------------TCCCCCCHH-----------HHHHHH-HHHHHHHHHHTTTSGGG
T ss_pred ------------------------------------HHHhhhHHH-----------HHHHHH-HHHHHHHHHHHHHHhhh
Confidence 000111100 000111 12478999999999999
Q ss_pred ccCCCchHHHhhhhhHHHHh-cCHHHHHHHHHHHhhcCCc
Q psy12713 477 KVDPNVADSYYQRGQIYCLF-GQYEEALRNLDKTIALNPN 515 (551)
Q Consensus 477 ~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~ 515 (551)
+.+|++......++.++... +.+++|.+.|.++.+..+.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 99998888888888888776 7788999999988875443
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=2.2e-16 Score=143.01 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+..+..+|..++..|++++|+..|++++..+|+++ .++..+|.++...| ++++|+..++++++.+|+++.+++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455666666666666666666666666666666652 34445666666666 6666666666666666666666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+|.++...|++++|+..|+++++++|++...+.... + ...
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-----------------------------------~-----~~~ 117 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-----------------------------------P-----SAL 117 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH-----------------------------------H-----HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH-----------------------------------H-----HHH
Confidence 666666666666666666666666554321110000 0 000
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-CCHHHHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR-GRLEEAVK 335 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~ 335 (551)
. ..++...........|.++.+...++.. . .|++++|++.++++++.+|++......++.++... +.+++|..
T Consensus 118 ~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 118 R---IAKKKRWNSIEERRIHQESELHSYLTRL--I-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp H---HHHHHHHHHHHHTCCCCCCHHHHHHHHH--H-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHhhhHHHHHHHHHH--H-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 0011111112223344445554445443 1 46666666666666666666665555666555554 55666777
Q ss_pred HHHHhccc
Q psy12713 336 CFNKALPL 343 (551)
Q Consensus 336 ~~~~a~~~ 343 (551)
.|.++.+.
T Consensus 192 ~f~~a~~~ 199 (281)
T 2c2l_A 192 LFSQVDEK 199 (281)
T ss_dssp HHHHSSCT
T ss_pred HHHhhhcc
Confidence 77766653
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=4.1e-15 Score=128.55 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC----CHHHHH
Q psy12713 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG----QYEEAL 191 (551)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~ 191 (551)
+|+..|+++.+. .+ ..+++.+|.++...+ ++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+
T Consensus 4 eA~~~~~~aa~~--g~----~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GD----RRAQYYLADTWVSSG-DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHT--TC----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHC--CC----HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 345555555543 22 234444555555555 556666555555543 345555555555555 4 555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHh----ccCHHHHH
Q psy12713 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVD----QEDFDGAE 265 (551)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~----~~~~~~A~ 265 (551)
.+|+++.+ +.++.++..+|.++... ..-.+++++|+.+|+++.+..| ..+.+++.+|.+|.. .+++++|+
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~~g--~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLVNR--QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTCG--GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcC--CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 55555543 34455555555443321 0012455555555555555544 235555555555555 55556666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhc
Q psy12713 266 EYFNRSIRVDPENASLYVHRAMLMLQARG-----NVDEAIKLIEKAISI 309 (551)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~~~~~ 309 (551)
.+|+++++. |.++.+++++|.+|....| ++++|+.+|+++.+.
T Consensus 150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666665555 4444555555555443222 555566666555554
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.9e-16 Score=155.46 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=174.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
....|...++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++..+|..+++++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455245678999999999999999999999999999998 99999999999999999999999999887
Q ss_pred HHhhcCCChh--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 216 HKMIVPGDRE--RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292 (551)
Q Consensus 216 ~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (551)
... + ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++..
T Consensus 118 ~~l------~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~- 190 (567)
T 1dce_A 118 SRL------PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ- 190 (567)
T ss_dssp HTC------SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH-
T ss_pred HHc------ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh-
Confidence 766 7 7799999999999999999999999999999999 89999999999999999999999999998655
Q ss_pred c--------------CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHhcccccC
Q psy12713 293 R--------------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE------------AVKCFNKALPLARD 346 (551)
Q Consensus 293 ~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~a~~~~~~ 346 (551)
. +.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|.
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 3 568999999999999999999999999999999998766 66668888887775
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.67 E-value=2e-17 Score=153.96 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=139.4
Q ss_pred HhhhcHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHH------------HhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713 72 FEHEDYLTAIRHCTE----EIESTSSNHTKALARLLRATVYI------------FTSQSTKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 72 ~~~g~~~~A~~~~~~----~l~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
...+.+++|+..+.. ++...|. . ++..+|.... .++++++|+..+++++...|.+
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~---~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~---- 146 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPS---Y--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ---- 146 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTT---T--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH----
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCc---c--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH----
Confidence 345688999999988 8888886 3 4555554432 4567788888888887776654
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---------------ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
..++..+|.++...| ++++|+..|++++...|.+ ..++.++|.++..+|++++|+..|++++++
T Consensus 147 a~~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEG-KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557788999999999 9999999999999999998 477777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH-HHHHHHHH
Q psy12713 201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA-EEYFNRSI 272 (551)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~ 272 (551)
+|++..+++.+|.++... |++++|+..|+++++.+|++..++..++.++...|++++| ...|++++
T Consensus 226 ~p~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666 7777777777777777777777777777777777777666 33444444
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=5.6e-16 Score=124.72 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=106.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+.+|++++..+|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence 456777888888899999999999999999999999999999999999999999999777 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
+++.+++.+|.++...|++++|+..|++++.+.|+++.....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 999999999999999999999999999999999877654433
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.66 E-value=5.5e-15 Score=127.79 Aligned_cols=179 Identities=15% Similarity=0.066 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh----HHHH
Q psy12713 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE----RVEQ 229 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 229 (551)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.++..+|.++ .. + ++++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y------~~-~g~~~~~~~ 71 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLK------IR-NPQQADYPQ 71 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHT------TS-STTSCCHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH------Hc-CCCCCCHHH
Confidence 4578889998875 78999999999999999999999999999875 6788999998543 33 4 8999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh---cCCHHHHH
Q psy12713 230 SLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQA---RGNVDEAI 300 (551)
Q Consensus 230 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~~~~~A~ 300 (551)
|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|... .+++++|+
T Consensus 72 A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999965 5789999999999998 8999999999999999988 3589999999996652 46899999
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHhcccccC
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQR-G-----RLEEAVKCFNKALPLARD 346 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~~~~ 346 (551)
.+|+++++. |.++.+++.+|.+|... | ++++|+.+|+++.+....
T Consensus 150 ~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 150 EYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999998 67788999999999874 3 899999999999987543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=7.4e-16 Score=124.58 Aligned_cols=121 Identities=12% Similarity=-0.037 Sum_probs=108.4
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 79 TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA 158 (551)
Q Consensus 79 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~ 158 (551)
.+-..|++++..+|. +..+++.+|.++...|++++|+..|++++..+|.++ .+++.+|.++...| ++++|+.
T Consensus 5 ~~~~~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g-~~~~A~~ 76 (148)
T 2vgx_A 5 SGGGTIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMG-QYDLAIH 76 (148)
T ss_dssp -CCCSHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHH
T ss_pred chhhhHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHh-hHHHHHH
Confidence 334567888999998 899999999999999999999999999999999984 45667999999999 9999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
.|++++.++|+++.+++.+|.++...|++++|+..|++++++.|+++..
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999999999999999999999999999999998887654
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=2.1e-14 Score=114.42 Aligned_cols=63 Identities=25% Similarity=0.489 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.
T Consensus 7 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 7 LGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 344444444 444444444444444444444444444444444444444444444333333333
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=1.9e-14 Score=114.68 Aligned_cols=133 Identities=23% Similarity=0.422 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
+++.+|.++...|++++|+..++++++..|.+...+..++.++... |++++|+..+++++...|.++.++..+|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh------cCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 4555666666666666666666666666666666666666555555 6666666666666666666666666666
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 312 (551)
.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|...+++++..+|+
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCC
Confidence 666666666666666666666666666666666666544 66666666666666655554
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=3e-15 Score=125.71 Aligned_cols=135 Identities=16% Similarity=0.274 Sum_probs=120.3
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCCH--
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-MLQARGNV-- 296 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-- 296 (551)
.+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ ++. .|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcch
Confidence 345669999999999999999999999999999999999999999999999999999999999999999 556 8998
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
++|+..++++++.+|+++.++..+|.++...|++++|+..|++++...|++........
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998866544443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=8.8e-16 Score=152.04 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED----------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-- 294 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 294 (551)
.++|+..+.+++..+|++..+|+..+.++...|+ +++++..++++++.+|.+..+|..++.++.. .|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccc
Confidence 3566777777777777777777777777777776 7888888888888888888888888887444 77
Q ss_pred CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccc
Q psy12713 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIK 373 (551)
Q Consensus 295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (551)
++++++.+++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+..-
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll--------------- 188 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL--------------- 188 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH---------------
Confidence 6688888888888888888888888888888888 788888888888888888877766554220
Q ss_pred cCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccch
Q psy12713 374 KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE 453 (551)
Q Consensus 374 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (551)
..+.. .... +. .+
T Consensus 189 ------------------~~l~~-----------------------------------~~~~-~~----------~~--- 201 (567)
T 1dce_A 189 ------------------PQLHP-----------------------------------QPDS-GP----------QG--- 201 (567)
T ss_dssp ------------------HHHSC-----------------------------------CCCS-SS----------CC---
T ss_pred ------------------Hhhcc-----------------------------------cccc-cc----------cc---
Confidence 00000 0000 00 00
Q ss_pred hhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHH------------HHHHHHHHhhcCCch
Q psy12713 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE------------ALRNLDKTIALNPNF 516 (551)
Q Consensus 454 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~------------A~~~~~~al~~~p~~ 516 (551)
-...+.+++|++.+.+++..+|++..+|+.++.++...+++++ |+.+|.+++.++|..
T Consensus 202 -----~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 202 -----RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred -----cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 0011468999999999999999999999999999999999877 777899999998874
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.63 E-value=3.8e-15 Score=119.78 Aligned_cols=120 Identities=9% Similarity=-0.035 Sum_probs=101.5
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 82 RHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD 161 (551)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~ 161 (551)
..|++++..+|+ +..+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...| ++++|+..|+
T Consensus 5 ~~l~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g-~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSED---TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLG-LYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred hhHHHHHcCCHH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 467778888887 888999999999999999999999999999999884 45666999999999 9999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 162 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
+++..+|+++.+++.+|.++...|++++|+..|++++.+.|+++....
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 999999999999999999999999999999999999998887765443
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-14 Score=114.40 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 321 (551)
|..+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.+++. .|++++|+..++++++.+|+++.++..+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999877 99999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcccc------cCHHHHHHHHhH
Q psy12713 322 TIEVQRGRLEEAVKCFNKALPLA------RDEAELSHIYSL 356 (551)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~~ 356 (551)
.++...|++++|+..|+++++++ |++..+...+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 99999999999999999999999 888776655543
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.7e-14 Score=125.22 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
....++..|..++..|++++|+..|++++ .| ++.+++.+|.++...|++++|+..|++++..+|++ ..++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 74 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAY 74 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHH
Confidence 34567888999999999999999999885 33 46789999999999999999999999999998887 4466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----------------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 203 (551)
+.+|.++...| ++++|+..|++++...|.+. .+++.+|.++...|++++|+..+++++++.|+
T Consensus 75 ~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 75 FQRGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcc-cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 77999999999 99999999999999888766 88999999999999999999999999999887
Q ss_pred CH
Q psy12713 204 FH 205 (551)
Q Consensus 204 ~~ 205 (551)
+.
T Consensus 154 ~~ 155 (213)
T 1hh8_A 154 PR 155 (213)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 133
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.61 E-value=5.5e-14 Score=124.99 Aligned_cols=188 Identities=11% Similarity=0.049 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
|+..+++.+...+.....+..+|.++...|++++|+..+.+.+..+| ++.+++...+.+++. .|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 56666666665545555667888888888888888888888887776 667777788888777 888888888888887
Q ss_pred hcCcC------CHHHHHHHHHHHHHhC--CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713 308 SIDKS------CMFAYETLGTIEVQRG--RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR 379 (551)
Q Consensus 308 ~~~~~------~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (551)
+.+|+ .......-|++....| ++.+|...|+++.+..|+.......+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------------------------- 218 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------------------------- 218 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence 77772 2333333455566666 88888888888877777621110000
Q ss_pred hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713 380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459 (551)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
+ ++
T Consensus 219 --------------------------------------------------------------------------n---~~ 221 (310)
T 3mv2_B 219 --------------------------------------------------------------------------N---LH 221 (310)
T ss_dssp --------------------------------------------------------------------------H---HH
T ss_pred --------------------------------------------------------------------------H---HH
Confidence 0 24
Q ss_pred hhhcChhHHHHhhHHhhcc----------CCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHH
Q psy12713 460 HAASDFTKAFADLDEAEKV----------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 522 (551)
..+|++++|...++.+++. +|++++++.+++.+...+|+ +|.++++++.+.+|+++.+...
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 4457888888888877765 48899999999999999998 8999999999999999876544
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=5.6e-14 Score=121.95 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 253 (551)
++.+|.++...|++++|+..|++++ .| +..++..+|.++... |++++|+..+++++..+|.++.++..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL------KNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445555555555555555555553 11 334444444444444 44555555555555555555555555555
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDPENA----------------SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
++...|++++|+..|+++++..|.+. .+++.+|.++.. .|++++|+..++++++..|++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence 55555555555555555555544443 455555555444 555555555555555555543
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=8.2e-14 Score=127.37 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKI 134 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ 134 (551)
....+...+..++..|+|++|+..+.+++...+.. ......++.+|.++...|++++|+..+++++...+.. +..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34566778888888888888888888888877653 1233456678888888888888888888888765433 222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAE---KVDPNVA----DSYYQRGQIYCLFGQYEEALRNLDKTIALN 201 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 201 (551)
...++..+|.+|...| ++++|+.+|++++ ...|++. .+++++|.+|..+|++++|+.++++++.+.
T Consensus 154 ~~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 154 NLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3557788888888888 8888888888888 4455532 578888888888888888888888888764
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=5.9e-14 Score=128.30 Aligned_cols=172 Identities=11% Similarity=0.100 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------H
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------V 245 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 245 (551)
..+...+..+...|++++|+..+.++++..+............+.....+...|++++|+..+++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666677777777777777776665543321111111111123333477777777777777654332 5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC------
Q psy12713 246 EACTLFAQVLVDQEDFDGAEEYFNRSI---RVDPENA----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS------ 312 (551)
Q Consensus 246 ~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 312 (551)
.++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.++.. .|++++|+.+++++++..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 688999999999999999999999999 4456543 588999999887 99999999999999987543
Q ss_pred CHHHHHHHHHHHHHhCCHHHH-HHHHHHhcccc
Q psy12713 313 CMFAYETLGTIEVQRGRLEEA-VKCFNKALPLA 344 (551)
Q Consensus 313 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~ 344 (551)
...++..+|.++...|++++| ..++++++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267899999999999999999 88899998764
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.4e-14 Score=110.48 Aligned_cols=111 Identities=22% Similarity=0.275 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+..+..+|..++..|++++|+..|++++..+|+++ .++..+|.++...| ++++|+..+++++..+|+++.+++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 455666666666666666666666666666666653 34445666666666 6666666666666666666666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC------CCCHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALN------PNFHVARAQRH 212 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~~~ 212 (551)
+|.++...|++++|+..|+++++++ |.+..++..+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 6666666666666666666666666 55555444443
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=3.3e-15 Score=127.98 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=119.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
.+.+....| +++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++..... ..
T Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------~~--- 79 (198)
T 2fbn_A 10 HSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ------IL--- 79 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH------HH---
T ss_pred hhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh------hH---
Confidence 455566666 77777777766655556667778888888888888888888888888877765421100 00
Q ss_pred CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
.... ..+ ...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+.
T Consensus 80 ---~~~~-------~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~ 143 (198)
T 2fbn_A 80 ---LDKK-------KNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKE 143 (198)
T ss_dssp ---HHHH-------HHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred ---HHHH-------HHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cccHHHHHH
Confidence 0100 000 146788899999999999999999999999999999999999999777 899999999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcc
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALP 342 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~ 342 (551)
.|+++++.+|++..++..++.++...++..++. ..+.+.+.
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888888777 44555544
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=2.5e-14 Score=120.10 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=98.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhhcCCCh
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV-VHKMIVPGDR 224 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 224 (551)
+...| ++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++...+..+|.+ +...
T Consensus 20 ~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~------ 92 (177)
T 2e2e_A 20 FASQQ-NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA------ 92 (177)
T ss_dssp CC------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------
T ss_pred hhhcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc------
Confidence 34456 788888888888888888888888888888888888888888888888888888777777777 5555
Q ss_pred hHH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 225 ERV--EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282 (551)
Q Consensus 225 ~~~--~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 282 (551)
|++ ++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++...
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 776 7888888888888888888888888888888888888888888888877765443
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=1.3e-13 Score=125.96 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=131.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch--h
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTK---ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK--I 134 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 134 (551)
....+...+..++..|+|++|+..+++++...+..+.. ...+..+|.++...|++++|+.++++++...+.... .
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 34556667889999999999999999999877653221 234446888888889999999999999986544332 2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
...++..+|.+|...| ++++|+.+|+++++.. +....+++++|.+|..+|++++|+.++++++++.+...
T Consensus 154 ~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-- 230 (293)
T 3u3w_A 154 NLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-- 230 (293)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--
Confidence 3557888999999999 9999999999999531 22245888999999999999999999999887653320
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhc
Q psy12713 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRV 274 (551)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~ 274 (551)
..+..+.++..+|.++...|+ +++|+..|++++.+
T Consensus 231 --------------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 231 --------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --------------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 011224556666666666663 46666666666654
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=2.9e-14 Score=111.82 Aligned_cols=104 Identities=23% Similarity=0.385 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFA 316 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 316 (551)
...++..+|..++..|++++|+..|+++++++|+++.++.++|.+++. +|++++|+..++++++++|++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345778899999999999999999999999999999999999999887 999999999999999998876 357
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+..+|.++...|++++|+++|++++...|+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 88999999999999999999999999888743
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=9.4e-14 Score=115.11 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++..|..++..|++++|+..|++++...|. +..++..+|.++...|++++|+..+++++...|.++ .++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~ 84 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGY 84 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHH
Confidence 4556666677777777777777777777776666 666666777777777777777777777776666653 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHhCCHHHHHHHHHHHHh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR--GQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~l~ 199 (551)
+.+|.++...| ++++|+..+++++..+|.+..++..+ +..+...|++++|+..+.++..
T Consensus 85 ~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55677777777 77777777777777666666665333 3336666666666666665543
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.56 E-value=7.4e-14 Score=115.43 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=102.6
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Q psy12713 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL 320 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 320 (551)
.+.++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..++++++.+|+++.+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345577899999999999999999999999999999999999999999887 9999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 321 GTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
|.++...|++++|+.+|+++++++|++...+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999999987754333
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=2.3e-13 Score=112.72 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+..+..+|.++...|++++|+..|++++...|.+ ..++..+|.++...| ++++|+..+++++..+|.++.++..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34445555555555555555555555555555544 223344555555555 5555555555555555555555555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 208 (551)
+|.++...|++++|+..+++++..+|.+...+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 55555555555555555555555555544444
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.55 E-value=1.7e-13 Score=125.21 Aligned_cols=179 Identities=11% Similarity=0.076 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK--VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA--- 171 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 171 (551)
....+...+..+...|++++|+..+++++...+..+... ...+..+|.++...+ ++++|+..+++++...+...
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHH
Confidence 344455567888999999999999999999877766543 334455889998889 99999999999998654432
Q ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713 172 ---DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248 (551)
Q Consensus 172 ---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 248 (551)
.++..+|.+|...|++++|+.+|+++++.....+ + ..+....++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------~--------------~~~~~~~~~ 199 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------D--------------NEEFDVKVR 199 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------------C--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------------c--------------chhHHHHHH
Confidence 3689999999999999999999999985321100 0 011235678
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARG-NVDEAIKLIEKAISID 310 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~ 310 (551)
.++|.+|...|++++|+.++++++++.+.. +.++..+|.++.. .| ++++|+.++++++.+.
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999999999875433 7789999999877 89 5799999999999764
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=109.03 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=102.0
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV 136 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 136 (551)
....+..++..|..++..|++++|+..|++++...|. +..++..+|.++...|++++|+..++++++..|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 84 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---- 84 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch----
Confidence 3457788888888888888888888888888888887 788888888888888888888888888888888763
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
.++..+|.++...| ++++|+..+++++..+|.+..++..++.++..+|+
T Consensus 85 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 KGYTRKAAALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 45666888888888 88888888888888888888888888888877664
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=5.6e-14 Score=109.02 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999777 9999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHhcccccCHHH
Q psy12713 327 RGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999987643
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.54 E-value=1.6e-14 Score=123.67 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=70.2
Q ss_pred hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchh------------HHHHHH
Q psy12713 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI------------KVNAHI 140 (551)
Q Consensus 73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~ 140 (551)
..|+|+.|...+.......+. .+..+..+|.+++..|++++|+..|++++...|.++.. ...++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ------CCCSGGGCCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344444444444433333333 55555566666666666666666666666655554310 013444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
.+|.++...| ++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...
T Consensus 93 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 4555555555 5555555555555555555555555555555555555555555555555555555554444444333
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=1.4e-13 Score=113.73 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+..++.+|..++..|+|++|+..|++++..+|. ++.++..+|.++...|++++|+..|++++.++|++ ..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~ 81 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHH
Confidence 46677788888888888888888888888888887 77788888888888888888888888888887776 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 181 (551)
++.+|.++...| ++++|+..|++++.++|++..++...+...
T Consensus 82 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 82 WSRLGLARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 566888888888 888888888888888887777666555443
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=2.8e-14 Score=112.83 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC-------c--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS-------N--HTKALARLLRATVYIFTSQSTKAIEDLTQLVED--- 127 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 127 (551)
.+..++..|..++..|+|++|+..|+++++.+|+ . +.+..+|.++|.++..+|++++|+..+++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4566777788888888888888888888887776 1 122335555555555555555555555555554
Q ss_pred ----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713 128 ----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170 (551)
Q Consensus 128 ----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~ 170 (551)
+|++...+..+++++|.++..+| ++++|+..|+++++++|++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcCCCc
Confidence 44432222222244444444444 4444444444444444444
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=108.57 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+.+++++++.+|.+..++..++.++..
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333333333333344444444444433333333344444443333 3444444444444444444333344444443333
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=1.1e-13 Score=108.48 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch---hHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK---IKV 136 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 136 (551)
.+.++..+|..++..|+|++|+..|+++++.+|+ ++.++..+|.++..+|++++|+..++++++++|+++. ...
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 3455566677777777777777777777777776 6666777777777777777777777777666554332 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDP 168 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~ 168 (551)
.++..+|.++...| ++++|+..|++++...|
T Consensus 84 ~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 84 KAMSRAGNAFQKQN-DLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCc
Confidence 45666666666666 66666666666666655
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=5.8e-14 Score=111.06 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-------NAS-----LYVHRAMLMLQARGNVDEAIKLIEKAISI--- 309 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--- 309 (551)
...+...|..+...|++++|+..|+++++++|+ +.. +|.++|.++.. +|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhc
Confidence 456788899999999999999999999999998 443 99999999776 99999999999999999
Q ss_pred ----CcCCHHHH----HHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 310 ----DKSCMFAY----ETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 310 ----~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
+|++..+| +++|.++..+|++++|+..|++++++.|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999 99999999999999999999999999998754
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=3.4e-13 Score=107.63 Aligned_cols=115 Identities=19% Similarity=0.280 Sum_probs=102.1
Q ss_pred hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.+++. .|++++|+..++++++.+|+++.++..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 4577888999999999999999999999999999999999999999999777 999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcccccC-----HHHHHHHHh
Q psy12713 320 LGTIEVQRGRLEEAVKCFNKALPLARD-----EAELSHIYS 355 (551)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~ 355 (551)
+|.++...|++++|+..|++++.+.|+ +..+...+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 555444443
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.52 E-value=1.9e-13 Score=108.08 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+.+++
T Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 104 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYYK 104 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 4444444444444444454555555555555555555555555555555555555555555555444 555555555555
Q ss_pred HHHhcCcCCHHHHHHHHHHHHHhCC
Q psy12713 305 KAISIDKSCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~g~ 329 (551)
++++..|+++.++..+|.++...|+
T Consensus 105 ~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 105 KALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555555555555555555554
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=2.6e-14 Score=138.88 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=121.5
Q ss_pred hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-----------hhHHHHHHH
Q psy12713 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-----------KIKVNAHIK 141 (551)
Q Consensus 73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~ 141 (551)
..+++++|+..|+.++...|. .+.++..+|.+++..|++++|+..|++++++.|.++ .....++.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 445677788788777777776 888999999999999999999999999999988873 122457778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
+|.++..+| ++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus 323 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~--- 398 (457)
T 1kt0_A 323 LAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA--- 398 (457)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH---
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Confidence 888888888 8999999999988888888888888888888888888888888888888888888888888777776
Q ss_pred CChhHHHHHHH
Q psy12713 222 GDRERVEQSLK 232 (551)
Q Consensus 222 ~~~~~~~~A~~ 232 (551)
++++++..
T Consensus 399 ---~~~~~a~~ 406 (457)
T 1kt0_A 399 ---KEHNERDR 406 (457)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 77776654
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.51 E-value=1.1e-13 Score=107.35 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
....++.+|..++..|++++|+..|+++++.+|+ ++.+++.+|.++...|++++|+..|+++++++|+++ .++
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~ 88 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVH 88 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH
Confidence 3456788899999999999999999999999998 888899999999999999999999999999988874 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVA 171 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 171 (551)
+.+|.++...| ++++|+..++++++.+|++.
T Consensus 89 ~~la~~~~~~g-~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 89 AALAVSHTNEH-NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCC
Confidence 66889999998 89999999999888888764
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=9.6e-13 Score=103.92 Aligned_cols=114 Identities=11% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
+..+|.++...| ++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|++...+..+|.++...
T Consensus 15 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 333444444444 4444444444444444444444444444444444444444444444444444443333333333333
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 259 (551)
|++++|+..+++++...|+++.++..+|.++...|
T Consensus 94 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 ------NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp ------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred ------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 33444444444444444433334444444443333
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.49 E-value=2.4e-13 Score=112.08 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc------------------CCCchhHHHHHHHHHHHHHHhCCchHHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES------------------TSSNHTKALARLLRATVYIFTSQSTKAIEDL 121 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 121 (551)
.+..+...|..++..|+|++|+..|++++.. +|. ...++..+|.++..+|++++|+..+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK---NIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT---HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH---HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6788899999999999999999999999988 333 5566666666666666666666666
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q psy12713 122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-DSYYQRGQIYCL 183 (551)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~ 183 (551)
++++.++|++ ..+++.+|.++...| ++++|+..|++++.++|+++ .+...++.+...
T Consensus 87 ~~al~~~p~~----~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 87 SEVLKREETN----EKALFRRAKARIAAW-KLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHSTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcc----hHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666665 335555666666666 66666666666666666665 444445444433
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.9e-12 Score=101.16 Aligned_cols=101 Identities=24% Similarity=0.425 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+.+++
T Consensus 23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~ 101 (125)
T 1na0_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQ 101 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444333 444444444444
Q ss_pred HHHhcCcCCHHHHHHHHHHHHH
Q psy12713 305 KAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
++++.+|+++.++..+|.++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 102 KALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHh
Confidence 4444444444444444444433
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=2.3e-14 Score=139.18 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=131.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
..+ ++++|+..++.++...|.....+..+|.++...|++++|+..|++++++.|.+.... +..
T Consensus 246 ~l~-~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~----------------~~~ 308 (457)
T 1kt0_A 246 TLK-SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS----------------EKE 308 (457)
T ss_dssp EEE-EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC----------------HHH
T ss_pred hhh-hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC----------------hHH
Confidence 456 777888888888877888888888888888888888888888888888877653200 111
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
.. ...+....++.++|.++...|++++|+..|+++++++|+++.+++.+|.+++. .|++++|+..|++++
T Consensus 309 ~~---------~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 309 SK---------ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVL 378 (457)
T ss_dssp HH---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Confidence 11 11222357889999999999999999999999999999999999999999887 999999999999999
Q ss_pred hcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHhcc
Q psy12713 308 SIDKSCMFAYETLGTIEVQRGRLEEAVK-CFNKALP 342 (551)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~ 342 (551)
+++|++..++..++.++...|++++|.. .+.+++.
T Consensus 379 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988774 4444443
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=5.8e-13 Score=109.73 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------------------DPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
...+...|..++..|++++|+..|.+++.. +|....++.++|.+++. .|++++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 467788899999999999999999999988 66667899999999887 99999999999999
Q ss_pred HhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH-HHHHHHh
Q psy12713 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA-ELSHIYS 355 (551)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~ 355 (551)
++++|+++.+++.+|.++...|++++|+..|++++.++|++. .+...+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 4444443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1.5e-12 Score=100.71 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 323 (551)
.+..+..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+..++++++..|+++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 356777888888888888888888888888888888888888888776 8888888888888888888888888888888
Q ss_pred HHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 324 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
+...|++++|...++++++..|++..++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888888888888888888888776655443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=8.7e-13 Score=105.25 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+..++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 101 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANLQ 101 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 4444444444444444444444455555555555555555555555555555555555555555444 555555555555
Q ss_pred HHHhcCcC
Q psy12713 305 KAISIDKS 312 (551)
Q Consensus 305 ~~~~~~~~ 312 (551)
+++...|+
T Consensus 102 ~a~~~~p~ 109 (137)
T 3q49_B 102 RAYSLAKE 109 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHChh
Confidence 55555444
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.47 E-value=2.6e-12 Score=100.44 Aligned_cols=113 Identities=24% Similarity=0.389 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy12713 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL 250 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 250 (551)
..++..+|.++...|++++|+..+++++...|.+...+..++.++... |++++|+..+++++...|.++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 344455555555555555555555555555555555555555444444 55555555555555555555555555
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289 (551)
Q Consensus 251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (551)
+|.++...|++++|+..+++++..+|+++.++..++.++
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 555566666666666666666666666555555555553
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1.7e-12 Score=100.38 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
+..++.+|.++...|++++|+..+++++...|.++ .++..+|.++...| ++++|+..+++++..+|+++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34455555555555555555555555555555442 23344555555555 55555555555555555555555555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
|.++...|++++|+..++++++.+|++...+..++
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55555555555555555555555555555554444
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=2e-12 Score=101.89 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
.++..|..++..|++++|+..|++++...|+++....+++.+|.++...|++++|+..|++++...|+++.. ..+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA-AGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc-HHHHHHH
Confidence 456667777777777777777777777666633333666677777777777777777777777666665331 3345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 181 (551)
|.++...| ++++|+..+++++...|+++.+......+-
T Consensus 83 a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEG-KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 77777776 777777777777766666665554444433
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.45 E-value=5.4e-10 Score=108.99 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=169.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-chHHHHHHHHHhhc---CCCCchh
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ-STKAIEDLTQLVED---TSVDPKI 134 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~ 134 (551)
+.+...|..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p----s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~- 86 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY----NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG- 86 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH-
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH-
Confidence 4678888999998888999999999999999988 46678777777666663 45677888888875 444433
Q ss_pred HHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCChhHH-HHHHHHH-------------HHhCCHHHHHHHHHH
Q psy12713 135 KVNAHIKRAVVHL----HAASDFTKAFADLDEAEKVDPNVADSY-YQRGQIY-------------CLFGQYEEALRNLDK 196 (551)
Q Consensus 135 ~~~~~~~la~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~-------------~~~~~~~~A~~~~~~ 196 (551)
.|...+..+. ..+ +.+.+...|++++...+.+..-+ ......- ...+.+..|...++.
T Consensus 87 ---iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 87 ---LYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp ---HHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444432 356 78999999999999643333222 2111111 112234445555555
Q ss_pred HHhcCCC-CHHHHHHHHHHHHHhhc---CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 197 TIALNPN-FHVARAQRHFVVHKMIV---PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 197 ~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
+....+. ....|.... .+.... ....+..+.....|++++...|..+..|...+..+...|+.++|...|++++
T Consensus 163 ~~~~~~~~s~~~W~~y~--~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLI--DLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHTCSHHHHHHHH--HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHH--HHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5443222 222332221 111100 0111225667789999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 273 RVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS----------IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
.. |.+...+...+.. .. .++ ....+..... ..+....+|...+....+.|+.+.|...|+++
T Consensus 241 ~~-P~~~~l~~~y~~~-~e-~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 241 EM-SDGMFLSLYYGLV-MD-EEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HH-CCSSHHHHHHHHH-TT-CTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHhh-cc-hhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99 9987776655443 11 221 1111111110 01112456778888887888899999999999
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.9e-12 Score=123.54 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=165.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--------------HTKALARLLRATVYIFTSQSTKAIEDLTQLV 125 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 125 (551)
.|...+..|..+...|+|++|++.|.++++..|.. .....++..+|.+|...|++++|++++.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999988763 2234578999999999999999999999999
Q ss_pred hcCCCCchh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 126 EDTSVDPKI--KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 126 ~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
...+..... ...+...++.++...| ++++|+..+++++...+ ....++..+|.++...|++++|+..++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 876554332 2234556788888889 99999999999987532 23568889999999999999999999998
Q ss_pred HhcC------CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHhccCHHHH
Q psy12713 198 IALN------PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNV----VEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 198 l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~la~~~~~~~~~~~A 264 (551)
+... +.....+...+.++... |++++|...+++++... +.. ...+...|.++...|++++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKL------RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8652 22345667777666666 99999999998888653 222 34667788888888999999
Q ss_pred HHHHHHHHhc
Q psy12713 265 EEYFNRSIRV 274 (551)
Q Consensus 265 ~~~~~~~~~~ 274 (551)
..+|.++++.
T Consensus 236 ~~~~~~a~~~ 245 (434)
T 4b4t_Q 236 FSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888764
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-12 Score=103.90 Aligned_cols=115 Identities=22% Similarity=0.209 Sum_probs=98.7
Q ss_pred hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 316 (551)
..|.....+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++.. .|++++|+..++++++.+|+++.+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHH
Confidence 346678888889999999999999999999999988887 7888888988777 899999999999999999988889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
+..+|.++...|++++|+.+|++++.++|++..++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 999999999999999999999999999888877655443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=4.9e-13 Score=102.38 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHHH
Q psy12713 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYE 318 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 318 (551)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.. .|++++|+.+++++++..|. +..++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 577778888899999999999999999999999999999999999999777 89999999999999999999 899999
Q ss_pred HHHHHHHHh-CCHHHHHHHHHHhcccccCH
Q psy12713 319 TLGTIEVQR-GRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 319 ~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~ 347 (551)
.+|.++... |++++|+.++++++...|++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999 99999999999999888864
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=3.1e-12 Score=109.88 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=121.9
Q ss_pred HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCchhHHHHHHHHHHHHHH
Q psy12713 71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPKIKVNAHIKRAVVHLH 148 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~ 148 (551)
++..|++++|...++.+.. +|. ....++..+|.++...|++++|+..+++++.... .++.....++..+|.++..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4678999999996655544 442 2789999999999999999999999999998532 2334456788899999999
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 149 AASDFTKAFADLDEAEKV---DPNV----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
.| ++++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++.+.+......
T Consensus 79 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------- 144 (203)
T 3gw4_A 79 AG-NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV------------- 144 (203)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------------
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH-------------
Confidence 99 999999999999987 4422 45788899999999999999999999886532111000
Q ss_pred CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 275 (551)
....++..+|.++...|++++|+..+++++++.
T Consensus 145 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 145 ---------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 002345667777777777777777777777653
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.43 E-value=1.9e-12 Score=111.25 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=113.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
+..| ++++|...++......+....++..+|.++...|++++|+..+++++.+.... +
T Consensus 3 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~- 60 (203)
T 3gw4_A 3 FEAH-DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--------------------G- 60 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------C-
T ss_pred cccc-cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------------------C-
Confidence 3456 77777775444433223456667777777777777777777777766532211 0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcCCHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPEN----ASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~~A 299 (551)
..+....++..+|.++...|++++|+..+++++.. .+++ ..++..+|.++.. .|++++|
T Consensus 61 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A 126 (203)
T 3gw4_A 61 -------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-FGDLAGA 126 (203)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-HTCHHHH
T ss_pred -------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-hCCHHHH
Confidence 11223456788888999999999999999988887 4433 4567888888777 8999999
Q ss_pred HHHHHHHHhcCcC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 300 IKLIEKAISIDKS--C----MFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 300 ~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
+.++++++...+. + ..++..+|.++...|++++|..++++++.+..
T Consensus 127 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 127 RQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9999998865332 1 34568999999999999999999999988754
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=4.8e-14 Score=137.41 Aligned_cols=138 Identities=21% Similarity=0.294 Sum_probs=120.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++.+|..++..|++++|+..|+++++.+|. +..++..+|.++..+|++++|+..++++++.+|++ ..++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~ 77 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGY 77 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHH
Confidence 4455667788899999999999999999999998 89999999999999999999999999999999988 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHhcCCCCH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI--YCLFGQYEEALRNLD-----------KTIALNPNFH 205 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~~l~~~~~~~ 205 (551)
+.+|.++..+| ++++|+..++++++.+|++..++..++.+ +...|++++|+..++ +++.+.|+..
T Consensus 78 ~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 78 YRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 77999999999 99999999999999999999999999988 888999999999999 7777777643
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.5e-12 Score=102.01 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=100.2
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
...+..++..|..++..|++++|+..|++++...|+.+....++..+|.++...|++++|+..+++++...|++ ..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HH
Confidence 45788899999999999999999999999999999721127888888999888999999999999988888877 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 182 (551)
+++.+|.++...| ++++|+..+++++..+|++..++..++.+..
T Consensus 101 ~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 5666888888888 8999999998888888888888877776643
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=6.7e-12 Score=121.86 Aligned_cols=201 Identities=9% Similarity=0.070 Sum_probs=145.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVA-----------------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 204 (551)
.|..+...| ++++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++...+..
T Consensus 10 ~a~~l~~~~-~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 10 EARRLVNEK-QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 455555555 55555555555555554432 246778888888888888888888887765554
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----
Q psy12713 205 HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---- 274 (551)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 274 (551)
...............++...|++++|+..+++++... +....++..+|.++...|++++|...+++++..
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 3332211111111155666788889998888887653 234678899999999999999999999998765
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC---C----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 275 --DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS---C----MFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 275 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
.+....++..++.++.. .|++++|...+++++...+. . ...+..+|.++...|++++|..+|.+++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 23336688899999887 99999999999999876432 2 3567788999999999999999999998753
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=4.3e-13 Score=124.69 Aligned_cols=156 Identities=10% Similarity=0.153 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++..|..++..|+|++|+..|++++...|. +.. +...|++.++...+. ..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~--------~~~~~~~~~~~~~l~-------------~~~~ 233 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFM--------FQLYGKYQDMALAVK-------------NPCH 233 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHH--------HTCCHHHHHHHHHHH-------------THHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chh--------hhhcccHHHHHHHHH-------------HHHH
Confidence 4566777777777788888888888888877775 331 111222222222110 1255
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
+++|.++...| ++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 234 ~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~--- 309 (338)
T 2if4_A 234 LNIAACLIKLK-RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE--- 309 (338)
T ss_dssp HHHHHHHHTTT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---
Confidence 66777777777 77777777777777777777777777777777777777777777777777777776666664422
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVV 245 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~ 245 (551)
...+..+++...|.+++...|.++
T Consensus 310 --~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 310 --QEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------------------
T ss_pred --HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 223666777777777777776654
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=2.2e-12 Score=98.63 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--c
Q psy12713 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--V 244 (551)
Q Consensus 167 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~ 244 (551)
+|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++... |++++|+..++++++..|. +
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL------ERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSCCTTC
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccch
Confidence 5666777777777777777777777777777777777777776677666665 7777777777777777777 6
Q ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC
Q psy12713 245 VEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 245 ~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~ 278 (551)
..++..+|.++... |++++|+..+++++...|.+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777777777 77777777777777776654
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=9.1e-13 Score=128.43 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=115.3
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++.++|.++.. .|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 5666779999999999999999999999999999999999999999999999999999999999999999877 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HhcccccCH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTI--EVQRGRLEEAVKCFN-----------KALPLARDE 347 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~a~~~~~~~ 347 (551)
|+..++++++.+|++..++..++.+ +...|++++|++.++ +++.+.|+.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999998 889999999999999 888877764
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.40 E-value=1.4e-11 Score=97.06 Aligned_cols=109 Identities=17% Similarity=0.037 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q psy12713 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQ 176 (551)
Q Consensus 100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 176 (551)
+++.+|.+++..|++++|+..|+++++..|+++.. ..+++.+|.++...| ++++|+..|++++..+|++ +.+++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 46677777777777777777777777777766432 245566777777777 7777777777777777777 666777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 210 (551)
+|.++...|++++|+..|++++...|++..+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 7777777777777777777777777776655443
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=2.6e-12 Score=101.33 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD----------GAEEYFNRSIRVDPENASLYVHRAMLMLQARG 294 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (551)
+.+++|+..++++++.+|+++++|+++|.++...++++ +|+..|+++++++|++..+++++|.+|.. .|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-FA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-hc
Confidence 77888888888888888888888888888888777654 77777777777777777777777777554 43
Q ss_pred -----------CHHHHHHHHHHHHhcCcCC
Q psy12713 295 -----------NVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 295 -----------~~~~A~~~~~~~~~~~~~~ 313 (551)
++++|+.+|+++++++|++
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 5556666666666665554
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=8.5e-12 Score=98.40 Aligned_cols=108 Identities=20% Similarity=0.371 Sum_probs=93.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFA 316 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 316 (551)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+.++++++...|.+ +.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456788899999999999999999999999999999999999999777 899999999999999988877 888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
+..+|.++...|++++|+.+|++++...|+ +.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 117 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 999999999999999999999999998885 444333
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.37 E-value=7.6e-13 Score=123.04 Aligned_cols=156 Identities=14% Similarity=0.100 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713 170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT 249 (551)
Q Consensus 170 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 249 (551)
....+..+|..+...|++++|+..|++++...|.+.. +...+++.++...+. ..+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------------~~~~~~~~~~~~~l~---------~~~~~ 234 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------------FQLYGKYQDMALAVK---------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------------HTCCHHHHHHHHHHH---------THHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------------hhhcccHHHHHHHHH---------HHHHH
Confidence 4566788888888889999999999998888876531 112266666655442 24788
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHhC
Q psy12713 250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI-EVQRG 328 (551)
Q Consensus 250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 328 (551)
++|.++...|++++|+..|+++++.+|++..+++++|.++.. .|++++|+..|+++++++|++..++..++.+ ....+
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999777 9999999999999999999999999999988 44567
Q ss_pred CHHHHHHHHHHhcccccCHHH
Q psy12713 329 RLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 329 ~~~~A~~~~~~a~~~~~~~~~ 349 (551)
..+++...|.+++...|+++.
T Consensus 314 ~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHhhCCCCCCCC
Confidence 788889999999999888764
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=7.3e-12 Score=117.57 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCC-------------chhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSS-------------NHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 126 (551)
.+..+...|..++..|+|++|+..|+++++..+. .+....++..+|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3556888899999999999999999999983332 011555666666666666666666666666666
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 127 DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 127 ~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
.+|++ ..+++.+|.++...| ++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 302 ~~p~~----~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 302 IDPSN----TKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCTTC----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchh----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 334455666666666 6666666666666666666666666666665555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=9.3e-13 Score=101.67 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDT---HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHHHH
Confidence 6666666666666666 355666666777777777777777777777777777776677777766555 677777777
Q ss_pred HHHHHHhcCcCCHHHH
Q psy12713 302 LIEKAISIDKSCMFAY 317 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~ 317 (551)
.+++++...|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777776666665543
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.35 E-value=2.3e-09 Score=104.61 Aligned_cols=221 Identities=8% Similarity=-0.017 Sum_probs=121.8
Q ss_pred hhh-cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713 73 EHE-DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS 151 (551)
Q Consensus 73 ~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 151 (551)
..| +...|..+|++++...|. |+++.+...|++++...| + ...|..........+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------~~~e~~~~iferal~~~p-s----~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------KDYRSLESLFGRCLKKSY-N----LDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTTCC-C----HHHHHHHHHHHHHHC-
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------CCHHHHHHHHHHHhccCC-C----HHHHHHHHHHHHHhCc
Confidence 346 477888888888887772 789999999999999877 3 2344445554444551
Q ss_pred CHHHHHHHHHHHHhc---CCCChhHHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-----
Q psy12713 152 DFTKAFADLDEAEKV---DPNVADSYYQRGQIYC----LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI----- 219 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 219 (551)
..+.....|+.++.. +|.+..+|......+. ..|+.+.+...|++++...+.+...+.. ....+...
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~-~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWK-DFENFELELNKIT 141 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHH-HHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHH-HHHHHHHHhcccc
Confidence 245567788888864 6778889988887754 3577889999999999963333322211 11111100
Q ss_pred ----cCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc--C-----HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713 220 ----VPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQE--D-----FDGAEEYFNRSIRVDPENASLYVHRAM 287 (551)
Q Consensus 220 ----~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~ 287 (551)
+....+.+..|...++.+....+. ....|..+...-...+ - .+.....|++++...|..+..|...+.
T Consensus 142 ~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~ 221 (493)
T 2uy1_A 142 GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSE 221 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 000112333344444443332221 2233433333222110 0 233445666666666666666666665
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 288 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
.... .|+.+.|..++++++.. |.+...+..
T Consensus 222 ~~~~-~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 222 YLIG-IGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5443 56666666666666666 665544443
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.35 E-value=7.9e-12 Score=98.61 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=73.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
+.+ .+++|+..++++++++|+++++|.++|.++...++++.+.... +.+
T Consensus 14 r~~-~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------------~~~ 62 (158)
T 1zu2_A 14 RIL-LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------------QMI 62 (158)
T ss_dssp HHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------------HHH
T ss_pred HHh-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH------------------------------hHH
Confidence 445 6677777777777777777777777777777766665332211 345
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-----------EDFDGAEEYFNRSIRVDPENASLYV 283 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (551)
++|+..|+++++++|+...+++++|.+|... |++++|+.+|+++++++|++...+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6777777777777777777777777777766 4889999999999999998764443
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.35 E-value=2e-11 Score=96.21 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ 170 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 170 (551)
.+.++..+|.++...|++++|+..+++++...|.++ .++..+|.++...| ++++|+..+++++...|.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHH
Confidence 344555555555555555555555555555555542 23344555555555 5555555555555555444
Q ss_pred -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 211 (551)
+.++..+|.++...|++++|+..|++++...| +......+
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45555555555555555555555555555555 34433333
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.33 E-value=1.8e-11 Score=100.65 Aligned_cols=143 Identities=11% Similarity=0.123 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC--Cchh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKI 134 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 134 (551)
.+..+...|..+...|++++|+..+++++...+.. .....++..+|.++...|++++|+.++++++...+. ++..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 45678889999999999999999999998876531 233468889999999999999999999999886433 3344
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 203 (551)
...++..+|.++...| ++++|+..+++++...+. ...++..+|.++...|++++|+..+++++++...
T Consensus 88 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4667888999999999 999999999999876322 2467888999999999999999999998876543
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.32 E-value=2.8e-12 Score=98.95 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=49.2
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
.|++++|+..|+++++..+++|..+.++..+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...| ++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g-~~ 77 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNLG-RY 77 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHT-CH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcC-CH
Confidence 35555555555555555211112555555555555555555555555555555555552 23344555555555 55
Q ss_pred HHHHHHHHHHHhcCCCChhH
Q psy12713 154 TKAFADLDEAEKVDPNVADS 173 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~ 173 (551)
++|+..+++++...|+++.+
T Consensus 78 ~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH
Confidence 55555555555555555443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=2e-11 Score=114.63 Aligned_cols=120 Identities=8% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEK----------------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 201 (551)
.+..+|..+...| ++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+++++++++
T Consensus 225 ~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4455566666666 66666666666655 334444455555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 264 (551)
|++..+++.+|.++... |++++|+..++++++.+|++..++..++.++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444 4455555555555544444444444444444444444443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=1.4e-11 Score=101.37 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA------DSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.++..+|.++...| ++++|+..+++++...+... .++..+|.++...|++++|+..+++++.
T Consensus 10 ~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444 44444444444444332211 2444445555555555555555554443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.1e-11 Score=93.03 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAY 317 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~ 317 (551)
++..+..+|.++...|++++|+..|+++++.+|+++.++.++|.+++. .|++++|+..++++++.+|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999777 999999999999999999998 8889
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
..+|.++...|+++.|+..+++.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 99999999999888877766554
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=4.7e-11 Score=91.02 Aligned_cols=89 Identities=8% Similarity=0.100 Sum_probs=80.5
Q ss_pred hhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch------HHHHHHHHHHHH
Q psy12713 455 ESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HVARAQRHFVWT 528 (551)
Q Consensus 455 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~ 528 (551)
.+..+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++.+|.++.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 34447788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred Hhhhhhhhhhhhccc
Q psy12713 529 STLAELMAFSDEFMI 543 (551)
Q Consensus 529 ~~~~~~~a~~~~~~~ 543 (551)
..|+...++...-.+
T Consensus 90 ~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 90 AVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHCCCCCSSSSSSC
T ss_pred HHHhHhhhHhHHHHh
Confidence 999877777655443
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=3e-10 Score=87.10 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 263 GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
+|+..|+++++.+|+++.+++.+|.+++. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888888888888888888666 88888888888888888888888888888888888888888888888888
Q ss_pred cccCHH
Q psy12713 343 LARDEA 348 (551)
Q Consensus 343 ~~~~~~ 348 (551)
+.|...
T Consensus 82 ~~~~~~ 87 (115)
T 2kat_A 82 AAQSRG 87 (115)
T ss_dssp HHHHHT
T ss_pred hccccc
Confidence 776543
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=5.2e-10 Score=81.55 Aligned_cols=85 Identities=29% Similarity=0.487 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Q psy12713 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 322 (551)
Q Consensus 243 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 322 (551)
.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+.+++++++.+|+++.++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3567888899999999999999999999999999999999999999777 899999999999999999999999999998
Q ss_pred HHHHhC
Q psy12713 323 IEVQRG 328 (551)
Q Consensus 323 ~~~~~g 328 (551)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 887765
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.14 E-value=5.4e-10 Score=85.66 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308 (551)
Q Consensus 229 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 308 (551)
+|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 577888888899999999999999999999999999999999999999999999999999777 8999999999999988
Q ss_pred cCcCC--HHHHHHHHHHH
Q psy12713 309 IDKSC--MFAYETLGTIE 324 (551)
Q Consensus 309 ~~~~~--~~~~~~l~~~~ 324 (551)
..|.. ......+...+
T Consensus 82 ~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHH
Confidence 87643 33444444333
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=2.2e-09 Score=103.69 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhcC-----CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCch
Q psy12713 64 LLSKAKRAFEHEDYLTAIRHCTEEIEST-----SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPK 133 (551)
Q Consensus 64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 133 (551)
.+..+..+..+|+|++|+..++++++.. |+.+....++..+|.+|..+|+|++|+.++++++.+ .|++|.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666778999999999999998753 333567888999999999999999999999999874 566666
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
+ ..++.++|.+|..+| ++++|+..+++++.+ .|++ .+....++.++..++.+++|...|.++.+.
T Consensus 392 ~-a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 L-GMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp H-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 678899999999999 999999999999875 4555 455678888899999999999999887653
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.05 E-value=2.8e-09 Score=77.52 Aligned_cols=83 Identities=19% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.+++.+|.++...|++++|+..+++++...|+++ .++..+|.++...| ++++|+..+++++..+|+++.++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 445555555555555666666666665555555542 23444555555555 5666666666665555555555555
Q ss_pred HHHHHHHh
Q psy12713 177 RGQIYCLF 184 (551)
Q Consensus 177 la~~~~~~ 184 (551)
+|.++...
T Consensus 83 l~~~~~~~ 90 (91)
T 1na3_A 83 LGNAKQKQ 90 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.6e-09 Score=80.42 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+|+++.+++.+|.+++. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|...
T Consensus 3 ~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 57777777777777666 77777777777777777777777777777777777777777777777777765443
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=9.6e-10 Score=81.61 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=77.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (551)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++.+|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 46788888999999999999999999999988 99999999777 899999999999999999988877644
Q ss_pred CCHHHHHHHHHHhcccccCHH
Q psy12713 328 GRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 328 g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888877653
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=3.3e-09 Score=78.70 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHH
Q psy12713 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAY 317 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 317 (551)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+..+++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4688899999999999999999999999999999999999999999999777 99999999999999987654 23444
Q ss_pred HHHHHHHHH
Q psy12713 318 ETLGTIEVQ 326 (551)
Q Consensus 318 ~~l~~~~~~ 326 (551)
..+..++..
T Consensus 81 ~~l~~~l~~ 89 (100)
T 3ma5_A 81 SELQDAKLK 89 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=1.2e-07 Score=85.96 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHhhCCCCCCcHHHHHHHHhhCCCCCCCCCCCCCCcccccCCCCCCcchHHHHHHHHHHHhh---hcHHHH
Q psy12713 4 DRGAQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEH---EDYLTA 80 (551)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A 80 (551)
.+..+.+..+...-.+.++..+.-.. ....+.+ ..+-.++.+|..++.. .++.+|
T Consensus 161 alQdei~~~I~~aL~~~l~~~e~~r~-~~~~p~~---------------------~~Aydl~Lra~~~l~~~~~~~~~~A 218 (372)
T 3ly7_A 161 AIQNDLLESLSKALNQPWPQRMQETL-QKILPHR---------------------GALLTNFYQAHDYLLHGDDKSLNRA 218 (372)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHH-HHHSCSS---------------------GGGHHHHHHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHH-hccCCCC---------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455666666666666665443222 1222222 2677888999988875 456899
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCc----hHHHH----HHHH--HhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713 81 IRHCTEEIESTSSNHTKALARLLRATVYIFTSQS----TKAIE----DLTQ--LVEDTSVDPKIKVNAHIKRAVVHLHAA 150 (551)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~----~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~ 150 (551)
+.+|+++++.+|+ .+.++..++.++.....+ ..... .+.. ++...|.+ ..++..++..+...|
T Consensus 219 ~~l~e~Al~lDP~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~----a~~~~alal~~l~~g 291 (372)
T 3ly7_A 219 SELLGEIVQSSPE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL----SIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC----HHHHHHHHHHHHhCC
Confidence 9999999999999 888888888887632111 11111 1222 22345555 335556888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Q psy12713 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206 (551)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 206 (551)
++++|+..+++++.++|+ ...+..+|.++...|++++|++.|.+++.++|....
T Consensus 292 -d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 292 -KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp -CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred -CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999974 678889999999999999999999999999997753
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.97 E-value=2.4e-09 Score=79.45 Aligned_cols=89 Identities=25% Similarity=0.380 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..|.++...| ++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 5 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 74 (99)
T 2kc7_A 5 KTIKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------- 74 (99)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence 3677777777 777777777777777777777 77777777777777777777777777777777665531
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNV 244 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~ 244 (551)
+.+.+++..|+++...+|++
T Consensus 75 -----~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -----KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -----HHHHHHHHHHCCTTHHHHCC
T ss_pred -----HHHHHHHHHHHHHhccCccc
Confidence 55566666666665555443
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.94 E-value=1.5e-07 Score=81.42 Aligned_cols=115 Identities=9% Similarity=-0.022 Sum_probs=85.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHh-----hcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhc-----cCHHHHH
Q psy12713 198 IALNPNFHVARAQRHFVVHKM-----IVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQ-----EDFDGAE 265 (551)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~ 265 (551)
-+.+|++...++..|...... .-....+....|...++++++++|+ +..+|..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 345677777777666665443 2245667788888888888888888 556888888888874 8888888
Q ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713 266 EYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312 (551)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 312 (551)
.+|+++++++|+. ..+++..|..++...|++++|..++++++..+|.
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888888864 7888888877555348888888888888887766
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=4.2e-08 Score=77.54 Aligned_cols=119 Identities=17% Similarity=0.037 Sum_probs=98.7
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH----h
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH----A 149 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 149 (551)
.+|+++|+.+|+++.+..+. .. . +|.+|...+.+++|+.+|+++.+.. + ..+++.+|.+|.. .
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~---~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~----~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM---FG--C--LSLVSNSQINKQKLFQYLSKACELN--S----GNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT---TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHCSSSC
T ss_pred ccCHHHHHHHHHHHHcCCCH---hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC--C----HHHHHHHHHHHHcCCCCC
Confidence 46889999999999988754 33 3 8999988889999999999999863 3 4577889999998 7
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVARAQ 210 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~ 210 (551)
+ ++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...
T Consensus 75 ~-d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 75 K-DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp C-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred c-cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 8 999999999999876 678999999999999 899999999999998863 4444433
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=2.6e-07 Score=83.75 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=101.5
Q ss_pred HHHhcCCCChhHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713 162 EAEKVDPNVADSY--YQRGQIYCLFGQ---YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236 (551)
Q Consensus 162 ~~~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 236 (551)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++..++..++.++....
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~----------------- 247 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH----------------- 247 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----------------
Confidence 3445567766554 345555555443 467888888888888888887777766654220
Q ss_pred HHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713 237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316 (551)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 316 (551)
...|....... ....+... ..++..+|.++.++..++..++. .|++++|+..+++++.++|+ ..+
T Consensus 248 --~~~~~~~~~~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~-~gd~d~A~~~l~rAl~Ln~s-~~a 312 (372)
T 3ly7_A 248 --SQHPLDEKQLA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALV-KGKTDESYQAINTGIDLEMS-WLN 312 (372)
T ss_dssp --HHSCCCHHHHH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred --ccCCCchhhHH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCC-HHH
Confidence 00011110000 01122221 12345678888888888777665 78888888888888888864 677
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
+..+|.++...|++++|++.|++|+.++|..+.
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 788888888888888888888888888888764
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=5.3e-08 Score=76.92 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIK 301 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~ 301 (551)
+++++|+.+|+++.+....... +|.+|...+..++|+.+|+++.+. .++.+.+++|.+|..- .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 7888899999998887644433 888888888888899999998876 6788889999886541 578999999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhcccc
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQ----RGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~ 344 (551)
+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999876 568899999999998 889999999999988764
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=3.4e-08 Score=95.37 Aligned_cols=129 Identities=10% Similarity=0.026 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--
Q psy12713 103 LRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV-- 170 (551)
Q Consensus 103 ~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-- 170 (551)
..+..+..+|++++|+..+++++++ .|+++.. ..++.++|.+|..+| ++++|+.++++++.. .|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~-a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV-LRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455577899999999999999885 4566554 778899999999999 999999999999875 3444
Q ss_pred -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713 171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR---AQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 239 (551)
...+.++|.+|..+|++++|+..+++++.+ .|+++... ..++.++... +.+++|...|.++.+
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~------~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL------RMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 567889999999999999999999999975 56665443 2333333333 666666666665543
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.80 E-value=9.2e-08 Score=82.78 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=127.4
Q ss_pred hcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---------------------CchHHHHHHHHHhhcCCCCch
Q psy12713 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS---------------------QSTKAIEDLTQLVEDTSVDPK 133 (551)
Q Consensus 75 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~~~ 133 (551)
.-..-.+..++-.+..+|+ +...+...|..|..-+ ++..|.+.|.++...
T Consensus 46 ~~~P~~Lk~~e~Ll~~~P~---~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y------ 116 (301)
T 3u64_A 46 QSLPLVLKVYEALHLQNPA---HRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY------ 116 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HhccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH------
Confidence 3456678888999999998 5544444444443221 133445555544331
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH-----HHHHHH-hcCCCChhHHHHHHHHHHH---h--C------CHHHHHHHHHH
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFA-----DLDEAE-KVDPNVADSYYQRGQIYCL---F--G------QYEEALRNLDK 196 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~-----~~~~~~-~~~~~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~ 196 (551)
-..+.+.. .. .+.+++. -+..++ ..+|++++.++..|.+... . | ....|...+++
T Consensus 117 ------~~raL~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~ler 188 (301)
T 3u64_A 117 ------ALSSLETA-YP-GFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLER 188 (301)
T ss_dssp ------HHHHHHHH-ST-THHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHh-Cc-cHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHH
Confidence 11122211 11 2333322 223333 4578888888887776644 1 2 36789999999
Q ss_pred HHhcCCC--CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Q psy12713 197 TIALNPN--FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQ-EDFDGAEEYFNRSI 272 (551)
Q Consensus 197 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 272 (551)
+++++|+ +..++..+|..+...- -.--|+.++|..+|++++.++|+. ..+++.+|..+... |++++|...+++++
T Consensus 189 AleLDP~~~~GsA~~~LG~lY~~vP-p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 189 ACDLWPSYQEGAVWNVLTKFYAAAP-ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHSC-TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcccCHHHHHHHHHHHhCC-CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999 6779999998887630 112399999999999999999975 99999999999884 99999999999999
Q ss_pred hcCCCC
Q psy12713 273 RVDPEN 278 (551)
Q Consensus 273 ~~~~~~ 278 (551)
...|..
T Consensus 268 ~a~p~~ 273 (301)
T 3u64_A 268 AIDPES 273 (301)
T ss_dssp HCCGGG
T ss_pred cCCCCC
Confidence 987763
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=1.1e-07 Score=68.61 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 275 DPENASLYVHRAMLMLQARGN---VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
+|+++..+..+|.+++. .++ .++|...++++++.+|+++.++..+|..++..|++++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56777777777777654 333 6777788888888888888888888888888888888888888877777763
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=2.2e-07 Score=72.41 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
+....+.+.|.+.+...|.+.++.+.+|+++.+.+ +.++++..++.+++.+ | +..++++++|..+++ .|+|++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence 45555555565555555556666666666666655 4446666666666655 4 335555666666555 6666666
Q ss_pred HHHHHHHHhcCcCCHHHHHH
Q psy12713 300 IKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (551)
..+++++++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 66666666666655544443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=2.6e-07 Score=66.55 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 241 HSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..++. .|+|++|+.+++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 46677777777777765544 5777777777777777777777777777666 777777777777777777663
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=4.6e-07 Score=70.57 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-c-CCHHHHHHHHHHHHHhCCHHHHH
Q psy12713 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---NVDEAIKLIEKAISID-K-SCMFAYETLGTIEVQRGRLEEAV 334 (551)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~ 334 (551)
....+.+.|.+.+..++.+..+.+++|+++.+ .+ +.++++..++.+++.+ | +..+.++.+|..+.+.|+|++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567778888888889999999999999776 77 6679999999999998 7 56899999999999999999999
Q ss_pred HHHHHhcccccCHHHHHHHHh
Q psy12713 335 KCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~ 355 (551)
.++++++++.|++..+.....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999987655543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.59 E-value=9.5e-07 Score=83.83 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=45.3
Q ss_pred hhcHHHHHHHHHHHhhc-----CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHH
Q psy12713 74 HEDYLTAIRHCTEEIES-----TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRA 143 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la 143 (551)
.|+|++|+..++++++. .|+.+....++..+|.+|..+|+|++|+.++++++.+ .|++|.+ ...+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV-ASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHH
Confidence 34455555555555542 2222334455555555555555555555555555542 3333333 34455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q psy12713 144 VVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 144 ~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
.+|..+| ++++|+..+++++.
T Consensus 390 ~~~~~qg-~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLE-NKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHH
Confidence 5555555 55555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.57 E-value=7.6e-07 Score=84.72 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhcC-----CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHH
Q psy12713 68 AKRAFEHEDYLTAIRHCTEEIEST-----SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVN 137 (551)
Q Consensus 68 a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 137 (551)
...+..+|+|++|+..++++++.. |+.+....++..+|.+|..+|+|++|+.++++++.. .|++|.. ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR-GV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH-HH
Confidence 333444555555555555555432 222334455555555555555555555555555542 2333332 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
.++++|.+|..+| ++++|+..+++++.
T Consensus 373 ~l~nLa~~~~~~g-~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQG-MFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 4555555555555 55555555555544
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.55 E-value=2.7e-07 Score=68.61 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=64.4
Q ss_pred hhhchhhhhcChhHHHHhhHHhhccC-------CCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 454 NESGQKHAASDFTKAFADLDEAEKVD-------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 454 ~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
..+..++..|+|..|+.+|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+..+++.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 34444788899999999999999863 34688999999999999999999999999999999999999998843
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.45 E-value=1.8e-06 Score=82.02 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=82.0
Q ss_pred HHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---hhHHH
Q psy12713 109 IFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV---ADSYY 175 (551)
Q Consensus 109 ~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~ 175 (551)
...|+|++|+..+++++++ .|+++.. ..++.++|.+|..+| ++++|+.++++++.. .|++ ...+.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYM-LHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHH-HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3468899999999999884 5666654 678899999999999 999999999999975 3444 56789
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR 208 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~ 208 (551)
++|.+|..+|++++|+..|++++++ .|+++...
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999999975 56666543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.41 E-value=2.9e-06 Score=62.91 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 317 (551)
+.-++.+|..++..|+|..|+..|+++++.. +..+.++..+|.++++ .|+++.|+.+++++++..|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445666777777777777777777666542 2234556666666555 6666666666666666666666665
Q ss_pred HHHH
Q psy12713 318 ETLG 321 (551)
Q Consensus 318 ~~l~ 321 (551)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.38 E-value=6.1e-05 Score=73.36 Aligned_cols=175 Identities=11% Similarity=0.064 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh---hcCCChhHHHHHHHHHHHHHHhC-CCcHHHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVHKM---IVPGDRERVEQSLKEFRNFVDTH-SNVVEAC 248 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 248 (551)
+...-..+.+.|+.++|++.|+++.+..- .+...+..+-.++... ......+..++|...|+++.... +.+..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33444555666666666666666654321 1233333322222111 12234578899999999987754 3367789
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQ 326 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 326 (551)
..+...+.+.|++++|...|++..+.. ..+...|..+...+.+ .|+.++|.++|+++.+.. ..+...|..+...+.+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999987753 2346677777777666 999999999999998753 2247889999999999
Q ss_pred hCCHHHHHHHHHHhcc--cccCHHH
Q psy12713 327 RGRLEEAVKCFNKALP--LARDEAE 349 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~--~~~~~~~ 349 (551)
.|+.++|.+++++..+ ..|+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998765 3566544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.34 E-value=6.7e-06 Score=78.24 Aligned_cols=104 Identities=6% Similarity=0.028 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--
Q psy12713 103 LRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV-- 170 (551)
Q Consensus 103 ~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-- 170 (551)
....-+..+|++++|+..+++++++ .|+++. ...++.++|.+|..+| ++++|+.++++++.. .|++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3344466789999999999999975 455554 4778899999999999 999999999999875 3444
Q ss_pred -hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCHHHH
Q psy12713 171 -ADSYYQRGQIYCLFGQYEEALRNLDKTIAL-----NPNFHVAR 208 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~ 208 (551)
...+.++|.+|..+|++++|+..+++++++ .|+++...
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 567889999999999999999999999875 56666543
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.30 E-value=0.00016 Score=70.36 Aligned_cols=163 Identities=8% Similarity=-0.006 Sum_probs=96.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcC-CCCh
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA---------ASDFTKAFADLDEAEKVD-PNVA 171 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~~A~~~~~~~~~~~-~~~~ 171 (551)
..+-..+.+.|+.++|++.|+++.+..-.. . ..+|..+-.++... + ..++|...|++..... +.+.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d--~~tyn~Li~~c~~~~~~~~~~~~~-~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-S--QYHYNVLLYVCSLAEAATESSPNP-GLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C--HHHHHHHHHHHTTCCCCSSSSCCH-HHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C--HhHHHHHHHHHHhCCchhhhhhcc-hHHHHHHHHHHHHHhCCCCCH
Confidence 334455566777777777777766542211 1 12233333333322 2 3667777777766542 2356
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHH
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALN-PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACT 249 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 249 (551)
.+|..+...|.+.|++++|...+++..+.. ..+...+..+...+.+. |+.++|...|+++.+.. ..+...+.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~------g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK------GDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 667777777777777777777777766542 22344455555444444 77777777777766543 22455667
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhc
Q psy12713 250 LFAQVLVDQEDFDGAEEYFNRSIRV 274 (551)
Q Consensus 250 ~la~~~~~~~~~~~A~~~~~~~~~~ 274 (551)
.+...+.+.|+.++|...+++.-+.
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 7777777777777777777776543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.20 E-value=3.5e-05 Score=57.61 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG---AEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
.....+...|.+.....+.+..+.+.+|+++....+... ++..++..+..+ | ..-+.++.+|..+++ .|+|++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence 445556666666666666777777777777777766655 777777777665 3 345567777777666 7777777
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHH
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGT 322 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~ 322 (551)
..+++.+++..|++..+......
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777777666554443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.04 E-value=5.3e-05 Score=57.77 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=90.6
Q ss_pred hCCCcHHHHHHHHHHHHhccCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 240 THSNVVEACTLFAQVLVDQEDF------DGAEEYFNRSIRVDPEN--------ASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
+.|.+++.|..........|+. ++-++.|++++..-|.. ...|...+.. .. .++.++|.+.|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHHH
Confidence 5688999999999999888998 88889999998876643 2345555543 34 7999999999999
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++......+.+|...|....++|+...|.+.+.+++.+.|...++
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 998877789999999999999999999999999999999987654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.01 E-value=7.2e-05 Score=55.93 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=80.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-c-CCHHHHHHHHHHHHHhCCHHHH
Q psy12713 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE---AIKLIEKAISID-K-SCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A 333 (551)
.....+...|.+....++.+..+.+++|+++.+ ..+... ++.+++..+..+ | ..-+.++.+|..+++.|+|++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344566777777777788889999999999766 676655 999999999877 5 4578999999999999999999
Q ss_pred HHHHHHhcccccCHHHHHHHHhH
Q psy12713 334 VKCFNKALPLARDEAELSHIYSL 356 (551)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~ 356 (551)
..+++.+++..|++..+..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999876655443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.96 E-value=7.1e-05 Score=57.07 Aligned_cols=114 Identities=7% Similarity=0.001 Sum_probs=62.7
Q ss_pred cCCCChhHHHHHHHHHHHhCCH------HHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713 166 VDPNVADSYYQRGQIYCLFGQY------EEALRNLDKTIALNPNFHV-ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238 (551)
Q Consensus 166 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 238 (551)
..|++++.|..........|+. ++-++.|++++..-|.... .|...+.+..+-..+...++.++|.+.|+.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5788888888888888888888 7888888888877664321 01111111100011112255555555555555
Q ss_pred HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Q psy12713 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279 (551)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 279 (551)
.....-+.+|...|..-.++|+...|.+.+.+++.+.|...
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 55444455555555555555555555555555555555443
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.80 E-value=5.6e-05 Score=59.16 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=77.2
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--- 128 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 128 (551)
......++.....++..|.|+.|+.....++... |+. .....++..+|.+++..|+|..|...|+++++..
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988866553 221 3456789999999999999999999999997742
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
+.++..... .+. .. .... ... .+.+.++.+.++.|+...+++++|+..++.+
T Consensus 97 ~k~~s~~~~----~~~----~s-s~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 97 SKTSKVRPS----TGN----SA-STPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hcCCCcccc----ccc----cC-CCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 222110000 110 00 0000 011 1334567777777777777777777776653
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.47 E-value=0.0024 Score=47.82 Aligned_cols=76 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
.+.+.+.+|+++.+..+. .+++..++..+..+|. .-+.++.+|..+++ .|+|++|..+.+.+++..|++..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 345566666666655433 3455666666555552 24455556666555 666666666666666666666554443
Q ss_pred H
Q psy12713 320 L 320 (551)
Q Consensus 320 l 320 (551)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.44 E-value=0.00039 Score=52.04 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=60.9
Q ss_pred cChhHHHHhhHHhhccCC-CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713 463 SDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST 530 (551)
Q Consensus 463 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 530 (551)
.+..+++.+++..++.+| ..-+.+|.+|..+.++|+|++|..+.+.++++.|+|..|......+-.+.
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI 125 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 467789999999999998 46889999999999999999999999999999999999988877776654
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.42 E-value=0.0056 Score=46.51 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHH
Q psy12713 242 SNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 317 (551)
...+.+.+++|+++....+. .+++..++..+...|. .-+.++.+|..+++ .|+|++|..+.+.+++..|++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34456666666666665543 3566666666665553 34455666666555 6666666666666666666665544
Q ss_pred HH
Q psy12713 318 ET 319 (551)
Q Consensus 318 ~~ 319 (551)
..
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.40 E-value=0.0033 Score=49.31 Aligned_cols=139 Identities=8% Similarity=0.031 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC---CC--CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDT---SV--DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD---P 168 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~--~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~---~ 168 (551)
...+++.-...++..|.|+.|+-....++... |+ .+.....++..+|..++..+ +|..|...|++++... +
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~-eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK-EYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHh
Confidence 34566777778889999999999998877753 33 35566778899999999999 9999999999998653 2
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248 (551)
Q Consensus 169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 248 (551)
........++. ...+.. ... .+.+.+..+.++.|+... +++++|+..++.+-.. ...+.+.
T Consensus 98 k~~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l------~~~~~Ai~~Le~Ip~k-~Rt~kvn 158 (167)
T 3ffl_A 98 KTSKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVL------KQDKDAIAILDGIPSR-QRTPKIN 158 (167)
T ss_dssp ------------------------------C-CCCHHHHHHHHHHHHHHT------TCHHHHHHHHHTSCGG-GCCHHHH
T ss_pred cCCCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHH------CCHHHHHHHHhcCCch-hcCHHHH
Confidence 22222111110 000000 111 244667889999999988 9999999999996332 2346666
Q ss_pred HHHHHHH
Q psy12713 249 TLFAQVL 255 (551)
Q Consensus 249 ~~la~~~ 255 (551)
..+|.+|
T Consensus 159 m~LakLy 165 (167)
T 3ffl_A 159 MLLANLY 165 (167)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 6777664
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.34 E-value=0.011 Score=45.02 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
.......+++++++.+. ....+..+++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S---~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS---TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 45677888888887544 4557788999999999998885 5678899999999999999999999999999999987
Q ss_pred HHHHHHH
Q psy12713 281 LYVHRAM 287 (551)
Q Consensus 281 ~~~~l~~ 287 (551)
+......
T Consensus 113 A~~Lk~~ 119 (144)
T 1y8m_A 113 VGALKSM 119 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.00 E-value=0.22 Score=46.12 Aligned_cols=139 Identities=9% Similarity=-0.014 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHH-hCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIF-TSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
-.+.+..|..+...|++++-..++......-+.- .........+-..+.. -+..+.-++.+..+++...+....+..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888999999999988888877654433321 1112222222222222 234444455555555543322222222
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 138 --AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN--V----ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 138 --~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
.-..+|..|+..| +|.+|...+.+..+.-.. + .+++.....+|...+++.++...+.++...
T Consensus 99 ~~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 99 QSLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 2236788888888 888888777777653211 1 355666677777788888887777776543
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.53 E-value=0.068 Score=45.79 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
++ .|+.++|+......++.+|.+......+.++++-.|+++.|.+.++.+.+++|+.......|
T Consensus 8 l~-~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 8 LS-EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp TT-TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred Hh-CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 55 89999999999999999999999999999999999999999999999999999987766555
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.48 E-value=0.54 Score=43.52 Aligned_cols=176 Identities=11% Similarity=-0.026 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH-
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN-AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY- 174 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~- 174 (551)
.-.+.+.+|..|...|++++-.+++......-+.-+..... ....+-..+....+..+.-++.+..+++...+.-..|
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999988876654433332221 1222333333322256666666766665433332222
Q ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCc
Q psy12713 175 -----YQRGQIYCLFGQYEEALRNLDKTIALNPN--FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNV 244 (551)
Q Consensus 175 -----~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 244 (551)
..+|.+|...|+|.+|.+.+.+..+.... +.... +-.......++...+++.++...+.++.... +.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--lev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--VEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 37899999999999999999988865332 21111 1111111134444589999998888886543 122
Q ss_pred H----HHHHHHHHHHH-hccCHHHHHHHHHHHHhc
Q psy12713 245 V----EACTLFAQVLV-DQEDFDGAEEYFNRSIRV 274 (551)
Q Consensus 245 ~----~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 274 (551)
| .....-|..++ ..++|..|...|-+++..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2 34556788888 899999999999988754
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.049 Score=54.99 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
.+..-+..+...|+++-|+.+.++++...|.....|..++.+|.. +|+++.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence 455556777778888888888888888888888888888888777 88888888777665
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.26 Score=51.44 Aligned_cols=101 Identities=12% Similarity=-0.012 Sum_probs=70.1
Q ss_pred HHHHHhhhcHHHHHH-HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 68 AKRAFEHEDYLTAIR-HCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 68 a~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
.......+++++|.. ++ ..-|+ ...+......+...|.+++|+...+ ++.. .....
T Consensus 606 ~~~~~~~~~~~~a~~~~l----~~i~~----~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~-------~f~~~ 662 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVL----PNVEG----KDSLTKIARFLEGQEYYEEALNISP--------DQDQ-------KFELA 662 (814)
T ss_dssp HHHHHHTTCHHHHHHHTG----GGCCC----HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH-------HHHHH
T ss_pred HhHHHHhCCHHHHHHHHH----hcCCc----hHHHHHHHHHHHhCCChHHheecCC--------Ccch-------heehh
Confidence 445567889999865 33 22230 1122556666778888888876642 2221 23345
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
...| +++.|.+..+ ..++...|..+|..+...|+++.|+.+|.++
T Consensus 663 l~~~-~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVG-QLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHT-CHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcC-CHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7788 9999998754 3456889999999999999999999999876
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.47 Score=45.17 Aligned_cols=205 Identities=11% Similarity=-0.004 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc---CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES---TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV 136 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 136 (551)
.++..+..+... ..|++++|++.+...-+. ..+......+...+...+...|+++...+.+.-........... .
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i 93 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-I 93 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-H
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-H
Confidence 445556666665 458999999887554432 22223357778888899999999998888776555443322221 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--C
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKV----DPN-------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--N 203 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~ 203 (551)
.........+...-+..+.. .....+.. ..+ .......++.++...|++.+|...+.....-.- .
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~ 171 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM 171 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence 22222222232221022211 11222221 111 134457789999999999999999988763211 1
Q ss_pred C----HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH---hCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 204 F----HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD---THSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 204 ~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
+ ...+.... .++...+++.+|...+.++.. ..+..+ ..+...|.++...++|.+|-.+|..++
T Consensus 172 ~~~~kve~~l~q~------rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 172 EMSEKIQFILEQM------ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CHHHHHHHHHHHH------HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 12222223 333334788888777777532 222222 355667777777888888887777776
Q ss_pred hc
Q psy12713 273 RV 274 (551)
Q Consensus 273 ~~ 274 (551)
..
T Consensus 246 ~~ 247 (445)
T 4b4t_P 246 QT 247 (445)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.042 Score=55.42 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHH--Hhc-cCHHHHHHHHHHHHhc--------CCCCH----------HHHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVL--VDQ-EDFDGAEEYFNRSIRV--------DPENA----------SLYVHR 285 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~--~~~-~~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l 285 (551)
++.|+..+++....+|.....+ ..+.+. ... .+--+|+..+.+.++. .+.+. ..+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 6788899999888888764322 222222 122 2334577767666531 22221 233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 286 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
+..++. .|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.+..+-
T Consensus 344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 555455 8999999999999999999999999999999999999999998888763
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.19 Score=40.25 Aligned_cols=109 Identities=8% Similarity=-0.094 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++..|..| +..|+++.|.++.+.. + +...|..+|......|+++-|..+|.++-.. ..
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~-- 65 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----N---DSITWERLIQEALAQGNASLAEMIYQTQHSF--------DK-- 65 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HH--
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HH--
Confidence 455556554 7789999999988765 3 5678999999999999999999999986542 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
+...|...| +.+.-....+.+..... +.....+++..|+++++++.|.+.
T Consensus 66 --L~~Ly~~tg-~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 66 --LSFLYLVTG-DVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp --HHHHHHHHT-CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred --HHHHHHHhC-CHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555677777 77666555555543332 233455677889999988888654
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.16 E-value=1.2 Score=44.22 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
.+.+.|...+.......+-+.. .+..++.-....+...++...+.+.....+++. ....++...++ .|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr-~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALG-TGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHH-HTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHH-CCCHHHHH
Confidence 5678888888776554333322 223334344445545677777777665444333 33334444466 79999999
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+|..+-......+...+.+|..+...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999876554445678889999999999999999999999875
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.12 E-value=1.2 Score=44.09 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
....|..|...+..|++..+...... +...|- .+ +......-...++. .-..+...++..|+.|.. ..+.
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL---~~--yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~--~~Lr 75 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPL---YP--YLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPA--RTLQ 75 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTT---HH--HHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHH--HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCc---HH--HHHHHHHHhCcccC--CHHHHHHHHHHCCCChhH--HHHH
Confidence 45678899999999999877665443 334443 22 22222222222221 112445555567776543 1222
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 141 KRA-VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 141 ~la-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
... ..+...+ ++..-+.++.. .|.+..............|+..+|......+.....
T Consensus 76 ~~~l~~l~~~~-~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 76 SRFVNELARRE-DWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhCC-CHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 222 2233455 77766654443 377788788888888899998888887777765543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=1.2 Score=42.46 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCcCC--
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAIS---IDKSC-- 313 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~-- 313 (551)
......++.++...|++.+|...+.....-. ..+ .+.+.....+++. .+++..|...++++.. ..+..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3456789999999999999999998875321 111 3466677777777 8999999999998742 12222
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 314 --MFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 314 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
...+...|.++...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 346678899999999999999999988774
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.82 E-value=0.49 Score=36.97 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=88.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713 68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147 (551)
Q Consensus 68 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 147 (551)
-...++-.+|+.++-+-.-.... .++....++.+++-.|++..++-.+.+. + . ..+.+..+.||.
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L~~~------~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N---T---~Ts~YYk~LCy~ 73 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACLLPC------KPEYRMLMSIVLYLNGEYTRALFHLHKL---N---T---CTSKYYESLCYK 73 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTC---C---B---HHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHccC------ChHHHhhhhhhhhhcchHhHHHHHHHhc---c---h---HHHHHHHHHHHH
Confidence 33446667888876443333333 3346677888899999999888776432 1 1 345566888999
Q ss_pred HhcCCHHHHHHHHHHHHhc----C-------------CCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 148 HAASDFTKAFADLDEAEKV----D-------------PNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~----~-------------~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
... ++..|+..++..+.- + |.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+
T Consensus 74 klK-dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 74 KKK-DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HTT-CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHH-HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 999 999999999999832 2 22333 45678999999999999999999999888765543
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.1 Score=49.56 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCh---
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVA--- 171 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--- 171 (551)
...++..+|..+...|++++|.+.|.++........ .....++....++...+ ++..+...+.++.... ..++
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 345667788888888888888888888776544332 23566777777888888 8888888888876542 1222
Q ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 172 -DSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 172 -~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
......|.++...++|..|...|..++....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2344556677778888888888877765543
No 246
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.53 E-value=0.64 Score=36.30 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI------------ 309 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~------------ 309 (551)
|..++....++.++.-.|.+..++-.+.. -+.....+..+.|+.. .+++..|+..+++.+.-
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCccccccc
Confidence 44445666778888889999988876543 2345566667777555 99999999999999832
Q ss_pred -----CcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 310 -----DKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 310 -----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
+|.+. ..+..+|.++.+.|+.++|+.++.......|-.+.+.
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 23333 3566889999999999999999999999888766654
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.48 E-value=0.48 Score=40.62 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=41.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
..+.| +.++|+......++.+|.+......+..+++-.|+++.|..-++.+.+++|...
T Consensus 7 ll~~g-~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEG-QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTT-CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34556 777777777777777777777777777777777777777777777777776643
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.16 E-value=1 Score=46.94 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=59.1
Q ss_pred HHHHhcCCHHHHHH-HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12713 145 VHLHAASDFTKAFA-DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223 (551)
Q Consensus 145 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (551)
.....+ ++++|.. .+. .-| +..........+...|.+++|+...+ ++...+.++ ...
T Consensus 608 ~~~~~~-~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~---l~~----- 665 (814)
T 3mkq_A 608 TLTLRG-EIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFELA---LKV----- 665 (814)
T ss_dssp HHHHTT-CHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHH---HHH-----
T ss_pred HHHHhC-CHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheehh---hhc-----
Confidence 334566 7777755 331 111 01122555566677777777765442 222222222 333
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271 (551)
Q Consensus 224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 271 (551)
|++++|.+..+. .++...|..+|..+...|+++.|+.+|.++
T Consensus 666 -~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 666 -GQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp -TCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 788888777542 356778888888888888888888888875
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.15 E-value=0.43 Score=44.53 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 239 (551)
..++..+...|++.+|+..+..++..+|-+...+..+..+++.. |+..+|+..|+++..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~------Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLS------DRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666555555 666666666665544
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.09 E-value=0.32 Score=50.46 Aligned_cols=126 Identities=13% Similarity=-0.049 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVED-----TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-PNV 170 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 170 (551)
....+..+...+.+.|+.++|...|....+. .|+ ...|..+...+.+.| +.++|.+.|+++.... ..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----vvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----LDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----HhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCc
Confidence 5567888999999999999999999775432 333 457788999999999 9999999999998753 346
Q ss_pred hhHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy12713 171 ADSYYQRGQIYCLFGQ-YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 237 (551)
...|..+-.++.+.|+ .++|.+.+++.....-.-....+ ........-+..+++.+++
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY---------~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT---------AVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH---------HSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc---------ccccChhhHHHHHHHHHHh
Confidence 7788888889999998 57899999998876533222222 3333345555666666555
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.66 E-value=1.3 Score=35.31 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-. .. .+..+|.. .|+.+.-...-+
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~---~L~~Ly~~-tg~~e~L~kla~ 84 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FD---KLSFLYLV-TGDVNKLSKMQN 84 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HH---HHHHHHHH-HTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HH---HHHHHHHH-hCCHHHHHHHHH
Confidence 8888888887664 5678899999999999999999999987532 22 23333333 677766555555
Q ss_pred HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+..... +.....+++..|+++++++.|.+.-.
T Consensus 85 iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 85 IAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4443322 22334556778888888888876544
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.3 Score=46.34 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPN---VADSYYQRGQIYCLFGQYEEALRNLDKTIALN--PNFHVARAQRH 212 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~ 212 (551)
++..+|..|...| ++++|.+.|.++...... ..+.+.....++...+++..+...+.++.... ..++.....+-
T Consensus 133 ~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3344777777777 777777777776654322 24666667777777777777777777765431 12222222211
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHhCCC
Q psy12713 213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243 (551)
Q Consensus 213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 243 (551)
.+.. ..+...++|..|...|..++.....
T Consensus 212 ~~~g--l~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYG--IHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHH--HGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHH--HHHHHhChHHHHHHHHHHHhccCCc
Confidence 1111 2333447777777777776665543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.51 E-value=0.73 Score=42.96 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
..++..++. .|++.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++..
T Consensus 175 ~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556 89999999999999999999999999999999999999999999988754
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.10 E-value=0.71 Score=48.00 Aligned_cols=84 Identities=6% Similarity=-0.047 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCC-HHH
Q psy12713 225 ERVEQSLKEFRNFVDT----HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGN-VDE 298 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~ 298 (551)
|+.++|...|.++.+. ...+...|+.+...+.+.|+.++|.+.|++..+.. .-+...|..+..++.+ .|+ .++
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK-~G~~~e~ 219 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR-QDQDAGT 219 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTCCHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CCCcHHH
Confidence 5555555555443221 12234455555555555555555555555554431 1123333333334333 444 344
Q ss_pred HHHHHHHHHhc
Q psy12713 299 AIKLIEKAISI 309 (551)
Q Consensus 299 A~~~~~~~~~~ 309 (551)
|.++++++.+.
T Consensus 220 A~~Ll~EM~~k 230 (1134)
T 3spa_A 220 IERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.13 Score=48.89 Aligned_cols=137 Identities=11% Similarity=0.034 Sum_probs=62.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhh--cCC----C--chhHHHHHHHHHHHHHHhCCchHH----------HHHHHHHhhc
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIE--STS----S--NHTKALARLLRATVYIFTSQSTKA----------IEDLTQLVED 127 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~--~~~----~--~~~~~~~~~~la~~~~~~g~~~~A----------~~~~~~~~~~ 127 (551)
..-..++..+++++|..+....+. .-. . +...+.+|+..+.++...|+.... ...+-.++..
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 334456778899999888776651 111 1 034667788888888777776543 2222223222
Q ss_pred C--CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 128 T--SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-------ADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 128 ~--~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
. ..+.......+..+-+.|...+ .++.|..+..++. .|.. ...++.+|.++..+++|.+|.+++..++
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HhcccCcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 1233445667778889999999 9999999999885 4432 4467788999999999999999999999
Q ss_pred hcCCCCH
Q psy12713 199 ALNPNFH 205 (551)
Q Consensus 199 ~~~~~~~ 205 (551)
...|.+.
T Consensus 298 rkap~~~ 304 (523)
T 4b4t_S 298 RKAPHNS 304 (523)
T ss_dssp SSCSCSS
T ss_pred HhCCcch
Confidence 9888653
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.78 E-value=0.44 Score=45.71 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
.+..+|.+..... .++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+-.
T Consensus 154 ~l~~LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5666888888888 899999999999999999999999999999999999999999999998877788887777655443
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.46 E-value=0.54 Score=45.10 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
.+..|..+|.++....|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 345566666666666666666666666666666666666666666555554455555555544
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.05 E-value=3.9 Score=44.40 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=81.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-CCCc-------------
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-SVDP------------- 132 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~------------- 132 (551)
....+...|.++-|.. .+...|. ++...+.+|.++...|++++|..+|+++-.-- ..+.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445666777766554 3334455 45566899999999999999999999874321 1110
Q ss_pred -----hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-h----hHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 133 -----KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-A----DSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 133 -----~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
......|..+...+...+ .++.+++....+++..+.+ . ..|..+-..+...|+|++|...+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 001233455666777778 8888888888888765433 2 25666777788888888887776543
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.96 E-value=2.1 Score=44.38 Aligned_cols=259 Identities=8% Similarity=0.023 Sum_probs=136.6
Q ss_pred HHhhhcHHHHHHHHHHHhhcC-CCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC---C---CchhHHHHHHHH
Q psy12713 71 AFEHEDYLTAIRHCTEEIEST-SSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS---V---DPKIKVNAHIKR 142 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~~l 142 (551)
....|+.++++..+.+.+... .++ ....-+++.+|.++...+ .+++..+...+.... . ++.+...+-..+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445677778888887777532 111 235667777777766555 468888877776432 1 233444566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (551)
|.++...+ + +++.+.+...+..+... ..+-+.+|.++...|+-+-....+..+.+.. +.......+..+-. ..
T Consensus 462 Gla~~GS~-~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGl-l~ 536 (963)
T 4ady_A 462 GLAAMGSA-N-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLAL-IN 536 (963)
T ss_dssp HHHSTTCC-C-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHH-HT
T ss_pred HHHhcCCC-C-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHh-hh
Confidence 77777666 4 46677777777643321 1345567888888888766666666655432 22222222211110 11
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhcC
Q psy12713 221 PGDRERVEQSLKEFRNFVDTHSNVVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--LYVHRAMLMLQARG 294 (551)
Q Consensus 221 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 294 (551)
+ |+.+.+....+.+.. .+ ++. +...+|..|...|+...-...+..+..-..++.. +...+|.+ . .|
T Consensus 537 ~---g~~e~~~~li~~L~~-~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI--~-~g 608 (963)
T 4ady_A 537 Y---GRQELADDLITKMLA-SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFV--L-LR 608 (963)
T ss_dssp T---TCGGGGHHHHHHHHH-CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--T-SS
T ss_pred C---CChHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhh--c-cC
Confidence 2 444444444444333 22 222 3345677788889875444466665543222222 23333433 2 45
Q ss_pred CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh--CC-HHHHHHHHHHhcccccCH
Q psy12713 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR--GR-LEEAVKCFNKALPLARDE 347 (551)
Q Consensus 295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-~~~A~~~~~~a~~~~~~~ 347 (551)
+.+.+...+....+ ..++.+.+..+.++-.. |+ ..+++..+.+... ++++
T Consensus 609 ~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~ 661 (963)
T 4ady_A 609 DYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVD 661 (963)
T ss_dssp SCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSH
T ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCH
Confidence 55444444432222 23455555444444333 22 2678888877754 4443
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.49 E-value=9 Score=39.79 Aligned_cols=255 Identities=13% Similarity=0.036 Sum_probs=138.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-------CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-------SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 132 (551)
...+++..|..+...+ .+++..+...+.... .......+-..+|.++...++ +++...+..++..+. .
T Consensus 412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~--~ 486 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS--A 486 (963)
T ss_dssp HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC--H
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC--H
Confidence 3455565665555544 478888888876543 111233466677877776665 567777777776432 2
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
.....+-+.+|.++...| +-+.....+..+.+...+...-...+|..+...|+.+.+....+..... .++...+ +
T Consensus 487 ~~~~~AalALGli~vGTg-n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRy--g 561 (963)
T 4ady_A 487 TSGEAAALGMGLCMLGTG-KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRY--G 561 (963)
T ss_dssp HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHH--H
T ss_pred HHHHHHHHHHhhhhcccC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHH--H
Confidence 333346667888888888 7766666666665543332222334444555677777666666655442 2333332 2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--H
Q psy12713 213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM--L 290 (551)
Q Consensus 213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~ 290 (551)
.++.....|...|+.......+..+.....++..-...+|......|+.+.+...+....+ ..++.+.+..+.++ .
T Consensus 562 aa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli 639 (963)
T 4ady_A 562 GAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIA 639 (963)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 2222225566668865554566666654333343333444445556666544444443332 23455544433331 1
Q ss_pred HhcCC-HHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhC
Q psy12713 291 QARGN-VDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRG 328 (551)
Q Consensus 291 ~~~~~-~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 328 (551)
. .|+ ..+++..+.+... ++++ ..+...||.+-....
T Consensus 640 ~-aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 640 C-AGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp T-SSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred c-cCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 1 233 3678888888754 4432 234556666655443
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.05 E-value=5 Score=43.55 Aligned_cols=164 Identities=8% Similarity=-0.023 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12713 144 VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223 (551)
Q Consensus 144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (551)
..+...+ .++-+.. .+...|.++...+.+|.++...|++++|..+|+++..--.... .....
T Consensus 820 ~~l~~~~-~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~-------------~l~~~ 881 (1139)
T 4fhn_B 820 EKLFLFK-QYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT-------------SQFAV 881 (1139)
T ss_dssp HHHHHHS-CTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC-------------CSCSS
T ss_pred HHHHHhh-hHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc-------------hhhhh
Confidence 3344444 4444332 2234455555667777777777777777777776542211100 00000
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHH----HHHHHHHHHHHhcCCHHH
Q psy12713 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NAS----LYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~~ 298 (551)
...... ...........+..|..+..++.+.|.++.+++..+.+++..+. +.. .|..+-..++. .|+|++
T Consensus 882 ~~~~~~----~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~-l~~ye~ 956 (1139)
T 4fhn_B 882 LREFQE----IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA-AGKFDA 956 (1139)
T ss_dssp HHHHHH----HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH-HCCSGG
T ss_pred hccccc----ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-hCCHHH
Confidence 011000 00000111223455667777788888888888888888876543 321 45555555566 788888
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|...+...-... .....+..+....+..|..+
T Consensus 957 Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 957 AHVALMVLSTTP-LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChh
Confidence 877775543222 22455555555555655544
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.35 Score=46.04 Aligned_cols=122 Identities=17% Similarity=0.040 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHhccCHHHHH----------HHHHHHHh-----cCC
Q psy12713 223 DRERVEQSLKEFRNFVD-----------THSNVVEACTLFAQVLVDQEDFDGAE----------EYFNRSIR-----VDP 276 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~~~-----~~~ 276 (551)
+.+++++|..+....+. .++-...+|+.++.++...|+..... ..+-.+++ .++
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 34556666555544431 12233566777777777777655421 12222222 222
Q ss_pred CC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 277 EN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 277 ~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
.. ...+..+-..|+. .+.+++|..+..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus 228 ~~qa~l~nllLRnYL~-~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLN-NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHH-SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHc-cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22 4456666777777 899999999999884 4432 4567788999999999999999999999987754
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.51 E-value=15 Score=32.62 Aligned_cols=83 Identities=13% Similarity=-0.044 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--GNVDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
-.++..+..+|..+...|++.+|..+|-.. +.+++..+..+-.-+.... |. |.....+..
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~---------------~~e~dlf~~ 192 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIE---------------DSTVAEFFS 192 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCC---------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCC---------------cchHHHHHH
Confidence 357899999999999999999998887421 1112333332222222211 22 222333333
Q ss_pred HH-HHHHHhCCHHHHHHHHHHhcc
Q psy12713 320 LG-TIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 320 l~-~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+ ..|...|+...|...++...+
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33 345677888888888776554
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.76 E-value=5 Score=30.23 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=52.5
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
.|+...-+.++-+. +..+ -+..+|.-++-.+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+
T Consensus 74 C~NlKrVi~C~~~~---n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CSCTHHHHHHHHHT---TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 34555555554332 2222 233444444444788888878877766666667888888888898899888888888
Q ss_pred HHhccc
Q psy12713 338 NKALPL 343 (551)
Q Consensus 338 ~~a~~~ 343 (551)
.+|-+.
T Consensus 149 ~~AC~k 154 (172)
T 1wy6_A 149 IEACKK 154 (172)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888664
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.54 E-value=0.00057 Score=63.45 Aligned_cols=235 Identities=13% Similarity=0.081 Sum_probs=147.8
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
+.++.|...|...+..|...+|+..|-++ .+|. .+.....+..+.|++++-+.+++-+-+.. .++.+...
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps------~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDte- 121 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS------SYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETE- 121 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC------SSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHH-
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHH-
Confidence 36788999999999999999999877554 3444 34455566678899999999998887653 33444455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
+..+|.+.+ +..+-.+.+ ..|+.++ ....|.-++..|.|+.|.-.|..+- +. ..++
T Consensus 122 ---Li~ayAk~~-rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~is----N~----akLA------ 177 (624)
T 3lvg_A 122 ---LIFALAKTN-RLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVS----NF----GRLA------ 177 (624)
T ss_dssp ---HHHHHHTSC-SSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGSC----CC----TTTS------
T ss_pred ---HHHHHHhhC-cHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhCc----cH----HHHH------
Confidence 888888888 755432222 1344333 4567888888999988877665432 22 2233
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
..+..+|++..|++.-+++ +++.+|-.....+...+++.-|..+--..+- .++.-.- +.. +++..|-+++
T Consensus 178 stLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~e---lv~-~YE~~G~f~E 247 (624)
T 3lvg_A 178 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEE---LIN-YYQDRGYFEE 247 (624)
T ss_dssp SSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSG---GGS-SSSTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHH---HHH-HHHhCCCHHH
Confidence 5666678888888776654 4455666666677777777666555444332 2222111 111 2334666777
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
-+..++.++.+...+...+..||.+|.+- +.++-.++++
T Consensus 248 LIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 248 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp STTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 77777777666666666666666666432 3444444443
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.32 E-value=31 Score=30.59 Aligned_cols=133 Identities=11% Similarity=-0.077 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---CCCCch
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED---TSVDPK 133 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 133 (551)
.++..+.+-...+..|+|=+|.+.++.+..+.- .-....+.++.-+..+.+.|++..|.+...-.++. ......
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~ 91 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD 91 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 456667777788888999999888887655421 10124556667777788888888877754443332 111111
Q ss_pred hHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhc-------CCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 134 IKVNAHIKRAVVHLHAASDFT-KAFADLDEAEKV-------DPNVADSYYQRGQIYCLFGQYEEALRNLD 195 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~-~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 195 (551)
....-.+..++.... .-+ .=..+.+++++. .-.++..+..+|..+...|++.+|..+|-
T Consensus 92 --~~~~~rl~~l~~~~p-~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 92 --DISVARLVRLIAELD-PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp --HHHHHHHHHHHTTCC-TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCC-CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 112223444443322 111 112333333322 23468889999999999999999888775
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.83 E-value=47 Score=29.74 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHhhhcH---HHHHHHHHHHhhcCC--Cc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---C--
Q psy12713 60 HELDLLSKAKRAFEHEDY---LTAIRHCTEEIESTS--SN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVED---T-- 128 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~-- 128 (551)
.++..+.+-...+..|+| =+|.+.++.+....- .. ....+.++.-+..+.+.|++..|.+...-.++. .
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~ 90 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ 90 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 456666777777888888 677776666543321 10 124455566666677777777666555333321 1
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 129 SVDPKIKVNAHIKRAVVHLHAASD--------FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 129 ~~~~~~~~~~~~~la~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
+-+. ...-.+..++.... . .++|+.+-.+.-...-.+++.+..+|..|.+.+++.+|..+|- +
T Consensus 91 ~~~~----~~~~rL~~L~~~~~-~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-- 161 (336)
T 3lpz_A 91 RVDG----ASRGKLLGCLRLFQ-PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-- 161 (336)
T ss_dssp CCCH----HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--
T ss_pred CCCH----HHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--
Confidence 1111 12222444443333 2 1223333222111233568888999999999999999888873 2
Q ss_pred CCCC-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHhccCHHHHHHHHHHHHh----c
Q psy12713 201 NPNF-HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ-VLVDQEDFDGAEEYFNRSIR----V 274 (551)
Q Consensus 201 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~----~ 274 (551)
..++ +..+..+-.-+ ..+..|.....+...+. .|...++...|...+....+ .
T Consensus 162 g~~~s~~~~a~mL~ew---------------------~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~ 220 (336)
T 3lpz_A 162 GTKESPEVLARMEYEW---------------------YKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVED 220 (336)
T ss_dssp SCTTHHHHHHHHHHHH---------------------HHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHH---------------------HHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 1121 12221111110 11112444555554443 46778888888776554442 1
Q ss_pred CC------------------CCHHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHh
Q psy12713 275 DP------------------ENASL-YVHRAMLMLQARGN---VDEAIKLIEKAISIDK-SCMFAYETLGTIEVQR 327 (551)
Q Consensus 275 ~~------------------~~~~~-~~~l~~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 327 (551)
+| ..+.. ...+....++ .+. +..-.+.|...++.+| .....+..+|.+|+..
T Consensus 221 ~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q-~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 221 NKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ-KGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp CTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH-SCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred CCCccccccccCCcccccCCCCchHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 22 23321 1122222234 454 3334445556666666 5667777777777654
No 268
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.90 E-value=26 Score=27.36 Aligned_cols=68 Identities=4% Similarity=-0.086 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHH---HHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLL---RATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~---la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
....-+..|..+++.|+|=+|-+.++.+-...+.. ......+.. .|..+...|+..-|...+.+++..
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55677889999999999999999999998876542 111223333 334456678888888888888763
No 269
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=72.85 E-value=14 Score=25.75 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 126 (551)
+..|..+++.|+|=+|-+.++.+-...|+. ....-+....|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 567888999999999999999988877642 11122223334444567777 8888888876
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.78 E-value=8.2 Score=25.37 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
..+|..+...|++++|..+|-+|+...|+-..+...+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45788888888899999988899888888777655553
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.88 E-value=83 Score=33.24 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-CCCCchhHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-TSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~ 145 (551)
....+...|.++-|. +.+...|. ++..-+.+|.++...|++++|..+|+++-.- ...+...... .....+
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~--~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL--REFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGG--HHHHHH
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccch--hhhhhc
Confidence 344455555555443 34445554 4444566777777777777777777765431 1111000000 000000
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHH
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN-PNFHV 206 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~ 206 (551)
.- ..+........|.....++...+-++-++...+.|++.. +++..
T Consensus 887 l~---------------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 887 AE---------------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HH---------------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cC---------------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00 000011112366677777888888888888888888643 34443
No 272
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=68.64 E-value=21 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS 92 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~ 92 (551)
.+...+..|..+++.++|.+|..+|+++.....
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 566777888888888888888888888875443
No 273
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.52 E-value=9.1 Score=31.53 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=19.0
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
...|.+|.++...++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345555666666666666666666666555544
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.96 E-value=39 Score=25.59 Aligned_cols=130 Identities=12% Similarity=-0.016 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHH---------------HHHHHHHH--HHhCCchHHHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALA---------------RLLRATVY--IFTSQSTKAIEDLTQL 124 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~---------------~~~la~~~--~~~g~~~~A~~~~~~~ 124 (551)
-.-+..|....-.|..++.+++..+.....|-...+... +-.+|..+ ..-|+....+.++-+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh
Confidence 334567888899999999999999998887752111111 11111111 0113444444444332
Q ss_pred hhcCCCCchhHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713 125 VEDTSVDPKIKVNAHIKRAV-VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201 (551)
Q Consensus 125 ~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 201 (551)
- .. .+ +..+|. ....+| +-++--+.+...+...+-++..+..+|..|.+.|+..+|.+.+.++.+..
T Consensus 88 n---~~-se-----~vd~ALd~lv~~~-KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 88 N---TL-NE-----HVNKALDILVIQG-KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp T---CC-CH-----HHHHHHHHHHHTT-CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred c---ch-HH-----HHHHHHHHHHHhc-cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 1 11 11 222444 344566 77877777777777777789999999999999999999999999888754
No 275
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.27 E-value=7.8 Score=26.54 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.4
Q ss_pred chHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713 482 VADSYYQRGQIYCLFGQYEEALRNLDKTI 510 (551)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 510 (551)
.+..+-.++..+...|+|++||++.+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 35567788888999999999988877766
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.69 E-value=14 Score=24.32 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred hhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHH
Q psy12713 487 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519 (551)
Q Consensus 487 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 519 (551)
..+|..+...|++++|..+|-+|+...|+-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 457888888888888888888888888776543
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.47 E-value=14 Score=25.82 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
..+|..+...|+++.|+.+|-+|+...|+-..+...+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36888888999999999999999999888777666554
No 278
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.27 E-value=11 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES 90 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 90 (551)
.+......|+.+...|+|+.|+.+|+.+++.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4566778888888888888888888887653
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.24 E-value=14 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
+-.+..+|...-..|+|++|+.+|.+++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3345555555555666666665555543
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.01 E-value=80 Score=24.65 Aligned_cols=66 Identities=5% Similarity=-0.050 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC--chhHHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--PKIKVNAHIK---RAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~---la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
--+..|..++..|+|-+|-+.++.+-...+.. .......++. .|......| +...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rg-N~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFE-DDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 34556677777788888888888888765544 2322334444 334445567 888888888887663
No 281
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=52.34 E-value=1.1e+02 Score=25.96 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF-TSQSTKAIEDLTQL 124 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 124 (551)
+.+..+|...-+.++|++.....+++...++. ...+-...+..+|-. .|....+...+...
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~e--Lt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEP--LSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--CCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 56777889999999999999999999988776 345555666666532 34444555555433
No 282
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=51.47 E-value=83 Score=24.39 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHH-HHHHHHHhhcCCCCchhHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKA-IEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
..-+..|...|-..+|...+..++.. +|. .......+.+|..|....++.+- .+....-+.+. .... +
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~---~~~-~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlk--Sde~-----y 77 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDY---APE-DMPYVIQYELASSYVMTESLTEEQRQTVSNNITLK--TDEQ-----Y 77 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTS---CGG-GSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTT--SCHH-----H
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC---Chh-hCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCcc--CCHH-----H
Confidence 45677888889999999999877653 222 12356788999999998877633 33333333332 2222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEA 163 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~ 163 (551)
.+=+++..+| ++++|+......
T Consensus 78 L~YWIyiGRg-~~~eAlDiA~~L 99 (161)
T 2ynq_A 78 MLYWIYIGRS-QSEEALELARTI 99 (161)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHHHHcCC-chHHHHHHHHhc
Confidence 2455777788 999999887654
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.30 E-value=18 Score=24.54 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEE 87 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~ 87 (551)
.+..+|...-..|+|++|+.+|.++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444444555555555544443
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.10 E-value=19 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
-.+-.+|..+...|+|++|+++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344567888999999999998777654
No 285
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.80 E-value=30 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCC
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSS 93 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~ 93 (551)
..+|..++..|+++.|+.+|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999888875
No 286
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=48.14 E-value=24 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
.+..+..+|...-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777778888888777776654
No 287
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.97 E-value=28 Score=34.91 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=44.5
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhh
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAEL 534 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 534 (551)
.+.....|...+..|+|.-|.+....++..+|+|..++..++.+|.++|-..
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4566677888888999999999999999999999999999999999877543
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.27 E-value=64 Score=26.43 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCch
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQST 115 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~ 115 (551)
+.-.|..|..++.+++|.+|...+..++...|.. .....++..+.-+-+-+|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445556666666666666666666666665542 122233333333334445543
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.26 E-value=1.6e+02 Score=26.39 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHH----------------HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRS----------------IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
-.+++.+..+|..+.+.+++.+|..+|-.. .+..|.....+...+.+-+-..++...|...+..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 346777777788888777777777665210 0112333444444444433336777777665544
Q ss_pred HH
Q psy12713 306 AI 307 (551)
Q Consensus 306 ~~ 307 (551)
..
T Consensus 213 f~ 214 (336)
T 3lpz_A 213 FT 214 (336)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.12 E-value=2.8e+02 Score=29.26 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
+...+...| .++-|. ..+..-|.++..-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~-~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFK-QYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTT-CHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhc-HHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334444555 555332 3445556666666777777777777777777777654
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=46.70 E-value=17 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.7
Q ss_pred HhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 486 YYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 486 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888999999999999988864
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.33 E-value=1.2e+02 Score=24.73 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=55.0
Q ss_pred HHHHHHHhcCC------CC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713 266 EYFNRSIRVDP------EN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAV 334 (551)
Q Consensus 266 ~~~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (551)
..+++++.... ++ ..+|...+.. +. .++..++..+|.-+... ....+..|...|..+...|++.+|.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~-~~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINL-FL-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHh-hc-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46666665422 22 3355555554 22 45577888888877754 4556888889999999999999999
Q ss_pred HHHHHhcccc
Q psy12713 335 KCFNKALPLA 344 (551)
Q Consensus 335 ~~~~~a~~~~ 344 (551)
+.|+..++..
T Consensus 136 ~Vy~~GI~~~ 145 (202)
T 3esl_A 136 VLLELGAENN 145 (202)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998865
No 293
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.87 E-value=0.29 Score=46.02 Aligned_cols=214 Identities=10% Similarity=0.010 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH--
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN-- 137 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 137 (551)
++..+..--....+.|.|++=+.+++-+-+...+ +.+=..+..+|.+.++..+-.+.+ . .|+...+ ..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke----~~IDteLi~ayAk~~rL~elEefl----~-~~N~A~i-q~VG 151 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVETELIFALAKTNRLAELEEFI----N-GPNNAHI-QQVG 151 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS----TTTTHHHHHHHHTSCSSSTTTSTT----S-CCSSSCT-HHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc----cccHHHHHHHHHhhCcHHHHHHHH----c-CCCcccH-HHHH
Confidence 4555556666677888998888888766554332 223344555666666654422221 1 2322221 11
Q ss_pred --------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 138 --------------------AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 138 --------------------~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
-|..++.++..+| +|+.|.+..++ .+++.+|......+...+++.-|..+--..
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~-~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLni 225 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG-EYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHI 225 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS-GGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHH
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH-HHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchh
Confidence 0011444444455 55554443332 345667777777777777777776665555
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--C
Q psy12713 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--D 275 (551)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~ 275 (551)
+- .|+...... ..|...|.+++-+..++.++....-+......+|.+|.+- ++++-.++++..... -
T Consensus 226 Iv-hadeL~elv---------~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 226 VV-HADELEELI---------NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 294 (624)
T ss_dssp HC-CSSCCSGGG---------SSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred cc-cHHHHHHHH---------HHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence 43 233222111 6778889999999999999888777888888888777654 566666665442221 1
Q ss_pred CC------CHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 276 PE------NASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 276 ~~------~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
|. ....|..+..+|.. -.+++.|..
T Consensus 295 pKviracE~ahLW~ElvfLY~~-ydE~DnA~l 325 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDK-YEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHH-HTCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhc-chhHHHHHH
Confidence 21 23356666666555 677776654
No 294
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=45.80 E-value=1.4e+02 Score=25.44 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF-TSQSTKAIEDLTQL 124 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 124 (551)
+-+.+..+|...-+.++|++.+...+++...++. ...+-...+..+|-. .|....+...+...
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~e--Lt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVE--LTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCc--CCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 3567788899999999999999999999988776 355556666666532 34444455554433
No 295
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=45.77 E-value=68 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHhcCHHHHHHHHHHHhh
Q psy12713 494 CLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 494 ~~~g~~~~A~~~~~~al~ 511 (551)
...|++++|+.+|..+++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 456666666666666654
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.94 E-value=1.3e+02 Score=24.93 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCCCCchhH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHH
Q psy12713 117 AIEDLTQLVEDTSVDPKIK-----VNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEE 189 (551)
Q Consensus 117 A~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 189 (551)
-...+++++....+++.+. ...|+..+. . .+.+..+|.-+... ....+..|...|..+...|++.+
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~----~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~ 168 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN----Y---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQK 168 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT----T---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHH----c---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHH
Confidence 4567777777654443332 333333332 1 23455666666554 45567888899999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q psy12713 190 ALRNLDKTIALNPNF 204 (551)
Q Consensus 190 A~~~~~~~l~~~~~~ 204 (551)
|...|+..++.....
T Consensus 169 A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 169 ADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999876543
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=44.17 E-value=29 Score=34.85 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS 112 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g 112 (551)
.+..+.+|...+..|+|.-|.++...++..+|+ +..+...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~---~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPD---NRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888887 7777777777777665
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.58 E-value=1.8e+02 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS 92 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~ 92 (551)
.....+..|..++..|+|++|+..|+.+|..-|
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 355678899999999999999999999886543
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.75 E-value=72 Score=30.09 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=41.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CcCC
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDP--E--------NASLYVHRAMLMLQARGNVDEAIKLIEKAISI-DKSC 313 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~--------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 313 (551)
..+-.+|++.|+..-+...++..-...+ . .....+.+|..++. .++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCcc
Confidence 3455777788888777777654432221 1 13356677777666 77888888888887777 5543
No 300
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.63 E-value=43 Score=31.61 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC--------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCC
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDP--NV--------ADSYYQRGQIYCLFGQYEEALRNLDKTIAL-NPNF 204 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~--~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~ 204 (551)
.+-.+|++.+ +...+...++..-...+ .. ....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 181 ~L~kiYFkl~-~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIE-SPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSS-CCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcC-CHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4557899999 99998888876544322 11 457789999999999999999999999998 7754
No 301
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.04 E-value=1.9e+02 Score=25.58 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS 92 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~ 92 (551)
.....+..|..++..|++.+|+..|+.+|..-|
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 355678999999999999999999999987765
No 302
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.92 E-value=25 Score=23.78 Aligned_cols=32 Identities=28% Similarity=0.113 Sum_probs=19.1
Q ss_pred hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
.++|+.+..+|++.+ ..|++++|+.+|..+++
T Consensus 8 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVKAD---------------KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 456777777776553 45555555555555543
No 303
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.72 E-value=34 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
.+..++.+|...-..|+|++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566667666677777777777766554
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.76 E-value=35 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
.+-.++.+|...-..|+|++|+.+|..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566667777777777777776665543
No 305
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=38.39 E-value=1.8e+02 Score=24.43 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hCCchHHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF-TSQSTKAIEDLT 122 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 122 (551)
-+.+...|...-+.++|++.+.+.+++...++. ...+-...+..+|-. .|....+...+.
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~e--Lt~EERnLLsvayKnvig~rR~swRiis 65 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVE--LTVEERNLLSVAYKNVIGARRASWRIIS 65 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCC--CCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456677888899999999999999999988775 345555566666532 233334444443
No 306
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.67 E-value=38 Score=24.54 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515 (551)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 515 (551)
..+++|..+..++|+.+. .|.-...+.-|.+++..+++++.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE--------~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE--------LGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 348889999999988864 144444555566677777777777653
No 307
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.02 E-value=2.6e+02 Score=25.68 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=50.0
Q ss_pred HhhhcHHHHHHHHHHHhhcCC-------C-------chhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc----CCCCch
Q psy12713 72 FEHEDYLTAIRHCTEEIESTS-------S-------NHTKALARLLRATVYIFTSQSTKAIEDLTQLVED----TSVDPK 133 (551)
Q Consensus 72 ~~~g~~~~A~~~~~~~l~~~~-------~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 133 (551)
....+.++|+++++++..... . ......+...++..|...|+.++|...++++-.. ..-++.
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 345577778777776532210 0 0124455666777777777777777777766532 112233
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAE 164 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~ 164 (551)
.....+...+..+...+ ++..+....-..+
T Consensus 167 v~~~~y~~~~~~~~~~~-~~a~~y~~~l~~l 196 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKN-DFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 44444444555555555 6665555444444
No 308
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.98 E-value=22 Score=28.66 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHhcCHHHHHHHHHHHhhcCCchHHHHH
Q psy12713 492 IYCLFGQYEEALRNLDKTIALNPNFHVARA 521 (551)
Q Consensus 492 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 521 (551)
++.+.|.+++|.+.+++...-+|++.....
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~ 155 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPFKS 155 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTTHH
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHHHH
Confidence 444555555555555555544444443333
No 309
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.84 E-value=1e+02 Score=20.83 Aligned_cols=32 Identities=34% Similarity=0.194 Sum_probs=19.0
Q ss_pred hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
.++|+.+..+|++.+ ..|++++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 566777777776553 45555555555555544
No 310
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=35.53 E-value=2.1e+02 Score=24.45 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhcCC--CCchhHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIEST--SSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTS--VDPKIKV 136 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~--~~~~~~~ 136 (551)
+.+...|...-+.++|++.+.+.+++...+ +. ...+-...+..+|-.. |....+.+.+...-+... .+.....
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~e--Lt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~ 86 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEE--LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVN 86 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCC--CCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCH----------HHHHHHHHHHHhc--
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----ADSYYQRGQIYCLFGQY----------EEALRNLDKTIAL-- 200 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~----------~~A~~~~~~~l~~-- 200 (551)
..--....+-.....--.+.+..+++.+--...+ .-.+...|..|.-.-.+ +.|...|+.+..+
T Consensus 87 ~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~ 166 (260)
T 1o9d_A 87 SIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIAT 166 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---CCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHH
Q psy12713 201 ---NPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVD 239 (551)
Q Consensus 201 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~ 239 (551)
.|.+| ..+|.++... ..|.-.++.++|....++++.
T Consensus 167 ~~L~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 167 TELAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHSCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 311
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.92 E-value=48 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
.+..++.+|...-..|+|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455666666666777777766665543
No 312
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.44 E-value=1.2e+02 Score=20.98 Aligned_cols=15 Identities=40% Similarity=0.321 Sum_probs=10.4
Q ss_pred hhHHHHhhHHhhccC
Q psy12713 465 FTKAFADLDEAEKVD 479 (551)
Q Consensus 465 ~~~A~~~~~~al~~~ 479 (551)
.+.|+..+.+|++.+
T Consensus 12 l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 12 STAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777776653
No 313
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.93 E-value=71 Score=22.21 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=29.4
Q ss_pred HHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHh
Q psy12713 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV--VHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 104 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~~~~~~~A~~~~~~~~~ 165 (551)
.|..++..|+|-+|-+.++.+-...|+........++.++. .....| +. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~g-n~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLG-RP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT-CC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcC-cH--HHHHHHHHHH
Confidence 45555666777777666666666554322222223333333 233344 44 5555555544
No 314
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.57 E-value=2.5e+02 Score=23.92 Aligned_cols=173 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCchhHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhcCC--CCchhH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTS--VDPKIK 135 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~--~~~~~~ 135 (551)
+.+...|...-+.++|++.+.+.+++...+ +. ...+-...+..+|-.. |....+...+...-+... .+....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~e--Lt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~ 106 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEE--LTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDAS 106 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCC--CCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHH
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCH----------HHHHHHHHHHH---
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----ADSYYQRGQIYCLFGQY----------EEALRNLDKTI--- 198 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~----------~~A~~~~~~~l--- 198 (551)
...--....+-.....--.+.+..+++.+--...+ .-.+...|..|.-.-.+ +.|...|+.+.
T Consensus 107 ~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA 186 (260)
T 2npm_A 107 KMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA 186 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHH
Q psy12713 199 -ALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVD 239 (551)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~ 239 (551)
.+.|.++ ..+|.++... ..|.-.++.++|....++++.
T Consensus 187 ~~L~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 187 KDLEPTHP---IRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp TTSCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HhCCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 315
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.74 E-value=88 Score=25.69 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=24.8
Q ss_pred hHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 491 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
.++.+.|.|++|.+.+++...-+|++......|..+-.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 44566777777777777777766666666655555444
No 316
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.35 E-value=4.4e+02 Score=26.30 Aligned_cols=217 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH----
Q psy12713 106 TVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY---- 181 (551)
Q Consensus 106 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~---- 181 (551)
.++.-.|+|+.|+.++-+. +..-.+. +|.++...| -... -...+..+|+ ....+++.+.
T Consensus 302 ~vLlLtgqFE~AI~~L~~~------~~vdAVH----~AIaL~~~g-LL~~----~~~lls~~~~--~~~lN~arLI~~Yt 364 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF------SEMDAVH----LAIGLASLK-LFKI----DSSTRLTKKP--KRDIRFANILANYT 364 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT------CHHHHHH----HHHHHHHTT-C-----------------------CHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhc------CchhHHH----HHHHHHHcC-CccC----CCcccccCCC--cccccHHHHHHHHH
Q ss_pred --HHhCCHHHHHHHHHHHHhcC-CCCHHHHHH-HHHHHHHhhcCCChhHHHHHHHH-------HHHHHHhCCC-------
Q psy12713 182 --CLFGQYEEALRNLDKTIALN-PNFHVARAQ-RHFVVHKMIVPGDRERVEQSLKE-------FRNFVDTHSN------- 243 (551)
Q Consensus 182 --~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~~~~~~------- 243 (551)
+...+..+|+++|--+-..+ ++....... +....... ++++.-+-. ..-+++....
T Consensus 365 ~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvlet------r~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~ 438 (661)
T 2qx5_A 365 KSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLET------KEFTVLLGKIGRDGARIPGVIEERQPLLHVRDE 438 (661)
T ss_dssp TTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHH------CCHHHHHCEECTTSCEECCHHHHTCGGGTCSCH
T ss_pred HHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhc------ccHHHHcCCcCCCCCcCcchHHHhhcccccccH
Q ss_pred ---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhc
Q psy12713 244 ---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-----------NVDEAIKLIEKAISI 309 (551)
Q Consensus 244 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~A~~~~~~~~~~ 309 (551)
...+....|.-....|++++|+..|.-+-+.+.--...-..++.+... .. ..+.-+...++..+.
T Consensus 439 ~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~-~~~~~~~~~~~~~~~~~l~~la~~i~~~ 517 (661)
T 2qx5_A 439 KEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSA-SDLDQPLVGPDDNSETNPVLLARRMASI 517 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SCTTSCSSCSSCCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc-cccccccccccccccccHHHHHHHHHHH
Q ss_pred CcCC--------------HHHHHHHHHHH--HHhCCHHHHHHHHHHhcccccCH
Q psy12713 310 DKSC--------------MFAYETLGTIE--VQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 310 ~~~~--------------~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
...+ ...+..+..++ +..|+++.|+..+++ +.+-|.+
T Consensus 518 y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 518 YFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
No 317
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=27.72 E-value=2e+02 Score=23.05 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=56.3
Q ss_pred ccCCCCCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHh-------hcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy12713 51 LTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEI-------ESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123 (551)
Q Consensus 51 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 123 (551)
+.+.-.+.+.-...+..|...++.|+...|.+.++-+= ..-|- ....-....+..+...|++.+|-..+..
T Consensus 98 v~edf~~tpeK~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL--~qT~~~V~~A~~ll~~gk~yeAn~aLk~ 175 (191)
T 3dza_A 98 LSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPL--NQTRKAVAQSQELLKAGKYYEANLVLKG 175 (191)
T ss_dssp EECCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEH--HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eeccccCChHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCCh--HhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444455677889999999999999999998888641 11231 3456667788899999999999998888
Q ss_pred Hhh
Q psy12713 124 LVE 126 (551)
Q Consensus 124 ~~~ 126 (551)
+..
T Consensus 176 Aed 178 (191)
T 3dza_A 176 AEE 178 (191)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.39 E-value=2.2e+02 Score=22.23 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=38.7
Q ss_pred HHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 156 AFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 156 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
+..+|..+... ....+..|...|..+...|++.+|.+.|+..++......
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55566665544 455678888899999999999999999999998765443
No 319
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.28 E-value=1.8e+02 Score=21.15 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=9.1
Q ss_pred hhHHHHhhHHhhcc
Q psy12713 465 FTKAFADLDEAEKV 478 (551)
Q Consensus 465 ~~~A~~~~~~al~~ 478 (551)
.+.|+.++.+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777777643
No 320
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.70 E-value=1.2e+02 Score=28.59 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHhcc
Q psy12713 314 MFAYETLGTIEVQRG--RLEEAVKCFNKALP 342 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~ 342 (551)
+++++..|+++.+.| +..+|...+.++.+
T Consensus 335 aEv~Li~AEA~~~~gg~~~~~A~~~lN~vR~ 365 (454)
T 3myv_A 335 SEVYLIAAEAGCKLGGDAAVQGLGYLNEIVK 365 (454)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 566777777777777 66666666655443
No 321
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.61 E-value=5.4e+02 Score=28.30 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
..++|..|++++.++++..|. -+.+..++.++..+|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEKRT-RDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcC
Confidence 378999999999999887763 556666666665555
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.38 E-value=1.3e+02 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713 107 VYIFTSQSTKAIEDLTQLVEDTSVDP 132 (551)
Q Consensus 107 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 132 (551)
++.+.|.|++|.+.+++....++.+.
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCch
Confidence 45667777777777777776554443
No 323
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.25 E-value=1.6e+02 Score=19.80 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=19.0
Q ss_pred hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
.++|+....+|++. ...|++++|+..|..+++
T Consensus 10 l~~A~~l~~~Av~~---------------D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDL---------------DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHH
Confidence 45677777766543 345666666666655554
No 324
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.79 E-value=1.4e+02 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCH-HHHHHHHHHhcc
Q psy12713 314 MFAYETLGTIEVQRGRL-EEAVKCFNKALP 342 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~ 342 (551)
+++++..|+++.+.|+. .+|+.++.++.+
T Consensus 357 aEvyLi~AEA~~~~g~~~~~A~~~lN~vR~ 386 (477)
T 3mcx_A 357 SEVYLNAAEAGLKKGTDIEEAQGYLNDIIS 386 (477)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 67777788888888877 777777776655
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.22 E-value=1.3e+02 Score=28.38 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
+++++..|+++.+.|+..+|...+.++.+
T Consensus 338 aEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 366 (461)
T 3kez_A 338 SEAYLNAAEAAVQTGDNAKAVKYLNSIVQ 366 (461)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 56777788888888877777777765543
No 326
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.68 E-value=1e+02 Score=21.93 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
++...+..|....+.|+|++|...++++-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667778888888888888887776633
No 327
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.37 E-value=69 Score=30.38 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=36.9
Q ss_pred cChhHHHHhhHHhhc------cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 463 SDFTKAFADLDEAEK------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 463 ~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
.++++|+..+..... -.++...++-.+|++|+.+|+|++|....++++..
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 467777766532111 12345568889999999999999999999999974
No 328
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.37 E-value=1.1e+02 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
++...+..|....+.|+|++|...++++-
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45666777888888888888888777653
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.33 E-value=1.7e+02 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713 105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
-.++.+.|.+++|.+.+++....++.+...+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr 154 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFK 154 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHH
Confidence 3456677777777777777776665554433
No 330
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.89 E-value=1.6e+02 Score=28.21 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
+++++..|++..+.|+ .+|+..+.+..
T Consensus 347 aEv~Li~AEA~~~~g~-~~A~~~lN~vR 373 (495)
T 3lew_A 347 AEIYLINAEAKAHLND-PDAINKLNDLK 373 (495)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-HHHHHHHHHHH
Confidence 5666667777666666 66666655443
No 331
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=27.19 E-value=19 Score=36.02 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCch
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQST 115 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 115 (551)
.+..+.+|...+..|+|.-|..+.+.++..+|+ +..+...++.++.++|.-.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~---~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPA---NKDARALQADAMEQLGYQT 512 (668)
Confidence 566788899999999999999999999999998 8889999999888887543
No 332
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.19 E-value=1.2e+02 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=28.2
Q ss_pred CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 481 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
+...++-.+|++|+.+|+|++|+...++++..
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34568889999999999999999999999864
No 333
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.16 E-value=1.3e+02 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred chHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
-..++-.+|++|+-.|+|++|+...++++..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4568889999999999999999999999864
No 334
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.61 E-value=4e+02 Score=22.73 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVD 167 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~ 167 (551)
+|.+.-+.+ +|++...+.+++...+
T Consensus 37 ~AKLaeqae-RYddMv~~MK~v~~~~ 61 (261)
T 3ubw_A 37 QAKLAEQAE-RYDEMVESMKKVAGMD 61 (261)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhcC
Confidence 344444444 4444444444444443
No 335
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.63 E-value=22 Score=35.68 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=31.8
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA 532 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 532 (551)
+.....|.-.+..|+|.-|.+..+.++..+|+|..++..++.+|.++|-
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 3444555555666677777777777777777777777666666666553
No 336
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.23 E-value=1.2e+02 Score=28.67 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=28.0
Q ss_pred CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 481 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
+...++..+|++|+-.|+|++|+...++++..
T Consensus 194 tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 194 NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34568889999999999999999999999863
No 337
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.17 E-value=1.2e+02 Score=21.70 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
++...+..|....+.|+|++|...++++-
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777888888888888888877653
Done!