RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12713
(551 letters)
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 137 bits (345), Expect = 2e-34
Identities = 106/370 (28%), Positives = 180/370 (48%), Gaps = 27/370 (7%)
Query: 10 AKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAK 69
AKE + + PS F+ YL+SF P +P GL + EL +E L
Sbjct: 247 AKEILETKPENLPSVTFVGNYLQSFRPKP--RPAGLEDSNEL-----DEETGNGQLQLGL 299
Query: 70 RAFEH---EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126
++ E E Y A R + ++ +A+A LR T + +A+ DL++ +E
Sbjct: 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359
Query: 127 DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186
+DP++ ++IKRA ++L D KA D D+A K++ D YY R Q++ + G+
Sbjct: 360 ---LDPRVT-QSYIKRASMNLEL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414
Query: 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246
+ +A ++ K+I L+P+F + Q +K + S+ FR +
Sbjct: 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPD 468
Query: 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY------VHRAMLMLQARGNVDEAI 300
+ ++L+DQ FD A E F+ +I ++ E +Y +++A+ + Q + + EA
Sbjct: 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528
Query: 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360
L EKA+ ID C A T+ + +Q+G ++EA+K F +A LAR E EL S +A
Sbjct: 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEAT 588
Query: 361 IAQMKVCERY 370
Q++V E Y
Sbjct: 589 RTQIQVQEDY 598
Score = 46.9 bits (111), Expect = 2e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
D KA D D+A K++ D YY R Q++ + G++ +A ++ K+I L+P+F
Sbjct: 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
Score = 41.5 bits (97), Expect = 0.001
Identities = 55/264 (20%), Positives = 98/264 (37%), Gaps = 48/264 (18%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
+DF+ A + ++++I P+ Y +RA A G+ ++ ++ A+ +D A
Sbjct: 140 NKDFNKAIKLYSKAIECKPDPV-YYSNRAACH-NALGDWEKVVEDTTAALELDPDYSKAL 197
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
G+ +A+ D I R+ AQ ER +KK
Sbjct: 198 NRRANAYDGLGKYADAL----------LDLTASCIIDGFRNEQSAQA--VER-LLKKFAE 244
Query: 378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPG 437
+++ I + +P + T V +Y Q E
Sbjct: 245 SKAKEILET----------------KPENLPSVTFV---GNYLQSFRPKPRPAGLE---- 281
Query: 438 DPTKTIEESEKYGNLENESGQKH----AASDFTKAFADLDEA---EKVDPNVADSYYQRG 490
+ E E+ GN + + G K A + +A ++A K+ A + RG
Sbjct: 282 ---DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338
Query: 491 QIYCLFGQYEEALRNLDKTIALNP 514
CL G++ EAL +L K+I L+P
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDP 362
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 79.4 bits (196), Expect = 2e-15
Identities = 91/509 (17%), Positives = 176/509 (34%), Gaps = 95/509 (18%)
Query: 86 EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145
+E+ + + AL LL+ + + A+ + + + P + + A +
Sbjct: 183 DEVLTADPGNVDAL--LLKGDLLLSLGNIELALAAYRKAIA---LRPN-NIAVLLALATI 236
Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
+ A +F +A D K PN ++Y + + YE+A L + P +
Sbjct: 237 LI-EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
Query: 206 VAR---------------AQRHFVVHKMIVPGDRE-------------RVEQSLKEFRNF 237
A A ++ P + RV++++
Sbjct: 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA 355
Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
+ + A +L + + DF+ A EY ++ +DPENA+ + L ++G+
Sbjct: 356 LGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL-SQGDPS 414
Query: 298 EAIKLIEKAISID---------------KSCMFA-------------------YETLGTI 323
EAI +E A +D +S F + LG I
Sbjct: 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
Query: 324 EVQRGRLEEAVKCFNKALPLARDE----AELSHI-YSLRDAAIAQMKVCERYNIKKKVSP 378
+ +G L +A + F KAL + D A L+ I + A +R+ + P
Sbjct: 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI----QRFEKVLTIDP 530
Query: 379 RSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGD 438
+ N+ LA LR N + + + Q++ L Y + G
Sbjct: 531 K--NLRAILALAGLYLRTGN-----EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582
Query: 439 PTKTIEESEKYGNLENESGQ--------KHAASDFTKAFADLDEAEKVDPNVADSYYQRG 490
K + + + +S + + AA D KA + + + P+ A +
Sbjct: 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642
Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
Y + Y +A+ +L + + L P+ A
Sbjct: 643 DAYAVMKNYAKAITSLKRALELKPDNTEA 671
Score = 75.9 bits (187), Expect = 2e-14
Identities = 89/449 (19%), Positives = 167/449 (37%), Gaps = 48/449 (10%)
Query: 92 SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS 151
S + K L A Y+ + + +++L T +D + R + +L
Sbjct: 84 SLGYPKNQVLPLLARAYLLQGKFQQVLDELP---GKTLLDDEGAAELLALRGLAYL-GLG 139
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
A ++A +DP + Q+ +++EA +D+ + +P A +
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199
Query: 212 HFVVHKMIVPGDRERV----EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267
GD E +L +R + N + A +L++ +F+ AE++
Sbjct: 200 ----------GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
+ ++ P + + +A++ Q + N ++A + ++ A+ + A G E Q
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQL 308
Query: 328 GRLEEAVKCFNKAL------PLARDEAELSHIYSLR-DAAIAQMKVCERYNIKKKVSPRS 380
G LE+A + N+ L AR + R D AIA + P +
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL---SPALGLDPDDPAA 365
Query: 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPT 440
++ LA+ + K + + A TQ S L+ GDP+
Sbjct: 366 LSLLGEAYLALGDFEKA----AEYLAKATELDPENAAARTQLGISKLSQ-------GDPS 414
Query: 441 KTIEESEKYGNLENESGQKHAA--------SDFTKAFADLDEAEKVDPNVADSYYQRGQI 492
+ I + E L+ E G+ F KA A + EK P+ A + G I
Sbjct: 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
Query: 493 YCLFGQYEEALRNLDKTIALNPNFHVARA 521
Y G +A +K +++ P+F A A
Sbjct: 475 YLGKGDLAKAREAFEKALSIEPDFFPAAA 503
Score = 69.0 bits (169), Expect = 4e-12
Identities = 71/353 (20%), Positives = 134/353 (37%), Gaps = 40/353 (11%)
Query: 23 SKQFIKTYLKSFPNDP----IL--------QPDGLSNGVELTNG-DTNESHELDLLSKAK 69
+ Q++ LK PN +L + D + G D ++ L LL +A
Sbjct: 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA- 372
Query: 70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS 129
D+ A + + E N A AR + ++AI DL +
Sbjct: 373 -YLALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQ--- 425
Query: 130 VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE 189
+DP++ A + + +L + F KA A + EK P+ A + G IY G +
Sbjct: 426 LDPELG-RADLLLILSYLRS-GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483
Query: 190 ALRNLDKTIALNPNFHVAR---AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246
A +K +++ P+F A A+ + +++ F + +
Sbjct: 484 AREAFEKALSIEPDFFPAAANLARIDI---------QEGNPDDAIQRFEKVLTIDPKNLR 534
Query: 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
A A + + + + A + ++ ++P+ + A L +G + +A+ ++ +A
Sbjct: 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEA 593
Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYS 355
A+ LG ++ G L +AV F K L L D A L+ Y+
Sbjct: 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646
Score = 60.9 bits (148), Expect = 1e-09
Identities = 87/466 (18%), Positives = 162/466 (34%), Gaps = 65/466 (13%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
L+ AK + Y AI ++ ++ A AR L +Y+ A ++L +
Sbjct: 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRK 81
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ----RGQ 179
+ PK +V + RA + LDE + + RG
Sbjct: 82 ALSLGY--PKNQVLPLLARAYLLQGKFQQV------LDELPGKTLLDDEGAAELLALRGL 133
Query: 180 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239
Y GQ E A ++ ++ +A++P A+ + E E R +D
Sbjct: 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL----------AENRFDEARALID 183
Query: 240 T----HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
V+A L +L+ + + A + ++I + P N ++ + A ++++A G
Sbjct: 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA-GE 242
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
+EA K + + + A+ ++ Q+ E+A + AL A + +
Sbjct: 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG 302
Query: 356 LRDAAIAQMKVCERY-NIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVM 414
+ + ++ +Y N K +P S + LA QLR R + +
Sbjct: 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARR--LLASIQLRLG-----RVDE--AIATLS 353
Query: 415 DKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDE 474
+ L+ + A DF KA L +
Sbjct: 354 PALGLDPDDPAALSLLGEAYL-------------------------ALGDFEKAAEYLAK 388
Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
A ++DP A + Q G G EA+ +L+ L+P A
Sbjct: 389 ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434
Score = 59.3 bits (144), Expect = 3e-09
Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
AA D KA + + + P+ A + Y + Y +A+ +L + + L P+ A+
Sbjct: 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
+ + +R E + K ++ H L + + Q+D+ A + +
Sbjct: 673 ------IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726
Query: 269 NRSIRVDPENASL-YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
++++ P + + +HRA+L A GN EA+K +E + + L + + +
Sbjct: 727 RKALKRAPSSQNAIKLHRALL---ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783
Query: 328 GRLEEAVKCFNKALPLARDEA----ELSHIYSLRDAAIA 362
++A+K + + A D A L+ +Y A
Sbjct: 784 KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRA 822
Score = 49.3 bits (118), Expect = 4e-06
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 9/208 (4%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
I+ A +L + + A L A + DPN A++ + G+IY G Y A + L K
Sbjct: 24 ELIEAAKSYL-QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKA 82
Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF-VDTHSNVVEACTLFAQVLV 256
++L + ++ G + +Q L E + E L +
Sbjct: 83 LSLGYP---KNQVLPLLARAYLLQG---KFQQVLDELPGKTLLDDEGAAELLALRGLAYL 136
Query: 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
+ A++ + +++ +DP + + A L L A DEA LI++ ++ D + A
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDA 195
Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLA 344
G + + G +E A+ + KA+ L
Sbjct: 196 LLLKGDLLLSLGNIELALAAYRKAIALR 223
Score = 49.3 bits (118), Expect = 5e-06
Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 16/273 (5%)
Query: 78 LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137
L +++ + + AL L A Y KAI L + +E + P
Sbjct: 617 LNKAVSSFKKLLALQPDSALALLLL--ADAYAVMKNYAKAITSLKRALE---LKPDN-TE 670
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
A I A + L AA A +K P A + G +Y Y A++ K
Sbjct: 671 AQIGLAQLLL-AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729
Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
+ P+ A ++ + +E LK H N T A++ +
Sbjct: 730 LKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-------HPNDAVLRTALAELYLA 782
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
Q+D+D A +++ ++ P+NA + + A L L+ + A++ E+A+ + +
Sbjct: 783 QKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAERALKLAPNIPAIL 840
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
+TLG + V++G + A+ KA+ +A + A +
Sbjct: 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
Score = 46.2 bits (110), Expect = 4e-05
Identities = 86/483 (17%), Positives = 165/483 (34%), Gaps = 96/483 (19%)
Query: 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL------HAASDF 153
A LL Y+ + Q KA+ +L + + + H ++L A F
Sbjct: 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA----SLHNLLGAIYLGKGDLAKAREAF 488
Query: 154 TKAF-------------ADLDEAEKVDPNVADSYYQR---------------GQIYCLFG 185
KA A +D E +P+ A +++ +Y G
Sbjct: 489 EKALSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
Query: 186 QYEEALRNLDKTIALNPNFHVARAQ--RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243
EEA+ L+K LNP ++++ +++++L D +
Sbjct: 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG--------QLKKALAILNEAADAAPD 599
Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 303
EA + + + D + A F + + + P++A + N +AI +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL-LLADAYAVMKNYAKAITSL 658
Query: 304 EKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-----IYSL-R 357
++A+ + A L + + R E A K K+L +A L +Y +
Sbjct: 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA-KSLQKQHPKAALGFELEGDLYLRQK 717
Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNI---------TKNEKLAIKQ----LREN-NDIIIR 403
D A + K +P SQN + N A+K L+ + ND ++R
Sbjct: 718 DYPAAIQAYRKAL----KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
Query: 404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAAS 463
A D + +++ + P + + Y L++ ++A
Sbjct: 774 TALAELYLAQKDYDKAIKHYQTVV-----KKAPDNAVVLNNLAWLYLELKDPRALEYA-- 826
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN-----FHV 518
+A P + D+ G + G+ + AL L K + + P +H+
Sbjct: 827 --ERALKLAPN----IPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
Query: 519 ARA 521
A A
Sbjct: 878 ALA 880
Score = 43.9 bits (104), Expect = 2e-04
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 143 AVVHLHAASDFT----KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
+ LH A + +A L+ K PN A ++Y Y++A+++ +
Sbjct: 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
Query: 199 ALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK---EFRNFVDTHSNVVEACTLFAQVL 255
P+ V ++ ++ P E E++LK +DT +L
Sbjct: 798 KKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDT----------LGWLL 847
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
V++ + D A +++ + PE A++ H A L L A G EA K ++K
Sbjct: 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLA-LALLATGRKAEARKELDKL 897
Score = 29.7 bits (67), Expect = 5.8
Identities = 43/249 (17%), Positives = 79/249 (31%), Gaps = 21/249 (8%)
Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ AI ++ A+ D + A LG I + G A K KAL L + +
Sbjct: 32 YLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQ 91
Query: 350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG 409
+ + L A + Q K + + + + LR + + +
Sbjct: 92 VLPL--LARAYLLQGKFQQVLDELPGKTLLD----DEGAAELLALRGLAYLGLGQLELAQ 145
Query: 410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHA-------- 461
K+ A + + + L + + ++ L + G A
Sbjct: 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV--LTADPGNVDALLLKGDLL 203
Query: 462 --ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN---F 516
+ A A +A + PN I G++EEA ++ D + PN
Sbjct: 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLA 263
Query: 517 HVARAQRHF 525
H +A F
Sbjct: 264 HYLKALVDF 272
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 67.8 bits (166), Expect = 4e-14
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
EA + D+D A EY+ +++ +DP+NA Y + A G +EA++ EK
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAA-YYKLGKYEEALEDYEK 59
Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A+ +D AY LG + G+ EEA++ + KAL L +
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 58.5 bits (142), Expect = 8e-11
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 41/139 (29%)
Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE 233
G +Y G Y+EAL +K + L+P+ A
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL---------------------- 40
Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
A ++ A E + +++ +DP+NA Y + +
Sbjct: 41 ------------------AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA-YYKL 81
Query: 294 GNVDEAIKLIEKAISIDKS 312
G +EA++ EKA+ +D +
Sbjct: 82 GKYEEALEAYEKALELDPN 100
Score = 54.7 bits (132), Expect = 2e-09
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD 161
L +Y +A+E + +E +DP A+ A + + +A D +
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALE---LDPDNAD-AYYNLAAAYYKL-GKYEEALEDYE 58
Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+A ++DP+ A +YY G Y G+YEEAL +K + L+PN
Sbjct: 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 54.7 bits (132), Expect = 2e-09
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 40/132 (30%)
Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
+ D+ +A ++A ++DP+ AD+YY Y G+YEEAL + +K + L+P+
Sbjct: 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN- 67
Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
+A ++ A
Sbjct: 68 ---------------------------------------AKAYYNLGLAYYKLGKYEEAL 88
Query: 266 EYFNRSIRVDPE 277
E + +++ +DP
Sbjct: 89 EAYEKALELDPN 100
Score = 53.5 bits (129), Expect = 4e-09
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
D+ +A ++A ++DP+ AD+YY Y G+YEEAL + +K + L+P+ A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 521 AQR 523
Sbjct: 72 YNL 74
Score = 49.3 bits (118), Expect = 2e-07
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
+ G+ DEA++ EKA+ +D AY L + G+ EEA++ + KAL L D A
Sbjct: 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68
Query: 349 EL 350
+
Sbjct: 69 KA 70
Score = 45.1 bits (107), Expect = 4e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ +A D ++A ++DP+ A +YY G Y G+YEEAL +K + L+PN
Sbjct: 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 31.2 bits (71), Expect = 0.30
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 486 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
G +Y G Y+EAL +K + L+P+ A
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL 40
Score = 28.9 bits (65), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
A LG + + G +EA++ + KAL L D A+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA 36
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 70.3 bits (170), Expect = 3e-13
Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 4/231 (1%)
Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYE 188
P + + + L +A L++A ++ PN+A++ G + G+YE
Sbjct: 53 LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112
Query: 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
EAL L+K +AL+P+ +A A + GD E + ++ + + EA
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYEL--GDYEEALELYEKALELDPELNELAEAL 170
Query: 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
+L ++ A E ++++++P++ + + L+ G +EA++ EKA+
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230
Query: 309 IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
+D A L + ++ GR EEA++ KAL L D L L A
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLA 281
Score = 45.6 bits (106), Expect = 3e-05
Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 12/269 (4%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA- 316
+D A ++ A + + +L+ G + EA++L+E+A+ + + A
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 317 -YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
L ++ GRLEEA++ KAL L + +L A K E + +K
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEII 435
+ E L + K + +D + ++L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN-ELAEALLALGALLEA 179
Query: 436 PGDPTKTIEESEKYGNLENESGQK---------HAASDFTKAFADLDEAEKVDPNVADSY 486
G + +E EK L + + + +A ++A ++DP+ A++
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239
Query: 487 YQRGQIYCLFGQYEEALRNLDKTIALNPN 515
Y + G+YEEAL L+K + L+P+
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPD 268
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 53.1 bits (128), Expect = 3e-09
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
L D+D A E + +++ +DP+NA Y + A+ L+ + +EA++ +EKA+ +D
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
Score = 44.2 bits (105), Expect = 4e-06
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-QYEEALRNLD 195
A D+ +A ++A ++DP+ A++YY Y G YEEAL +L+
Sbjct: 4 EALKNLGNALFKLG-DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 196 KTIALNP 202
K + L+P
Sbjct: 63 KALELDP 69
Score = 42.3 bits (100), Expect = 2e-05
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-QYEEALRNLDKTIALNP 514
D+ +A ++A ++DP+ A++YY Y G YEEAL +L+K + L+P
Sbjct: 18 DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
Score = 40.4 bits (95), Expect = 9e-05
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+ A++ G G Y+EA+ +K + L+P+ A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43
Score = 40.4 bits (95), Expect = 9e-05
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ A++ G G Y+EA+ +K + L+P+ A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL 43
Score = 40.4 bits (95), Expect = 9e-05
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVK 335
+NA + + + G+ DEAI+ EKA+ +D AY L ++ G EEA++
Sbjct: 1 DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59
Query: 336 CFNKAL 341
KAL
Sbjct: 60 DLEKAL 65
Score = 32.7 bits (75), Expect = 0.055
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY 370
A + LG + G +EA++ + KAL L D AE Y A+A +K+ + Y
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNL--ALAYLKLGKDY 54
Score = 28.8 bits (65), Expect = 1.3
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT-SQSTKAIEDLT 122
L + F+ DY AI + +E N A A A Y+ +A+EDL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDN---AEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 123 QLVE 126
+ +E
Sbjct: 63 KALE 66
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 47.0 bits (112), Expect = 5e-07
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-------CMFAYETLGTIEVQR 327
P+ A+ + A L+L+ G+ DEA++L+EKA+ + + A L + +
Sbjct: 1 HPDLAAALNNLA-LVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59
Query: 328 GRLEEAVKCFNKALPLARD 346
G +EA++ KAL L
Sbjct: 60 GDYDEALEYLEKALALREA 78
Score = 38.5 bits (90), Expect = 5e-04
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
P++A + + G Y+EAL L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELL-------------------------------- 28
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
E++L+ R + H A A++ + D+D A EY +++ +
Sbjct: 29 -EKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 448 KYGNLENESGQKHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
+ G A KA E + P A + ++Y G Y+EAL L
Sbjct: 10 NLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYL 69
Query: 507 DKTIALNPN 515
+K +AL
Sbjct: 70 EKALALREA 78
Score = 36.6 bits (85), Expect = 0.002
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 137 NAHIKRAVVHLH------AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
A A+V A KA E + P A + ++Y G Y+EA
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 191 LRNLDKTIALNPN 203
L L+K +AL
Sbjct: 66 LEYLEKALALREA 78
Score = 31.6 bits (72), Expect = 0.17
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
P++A + + G Y+EAL L+K + L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALEL 34
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 47.3 bits (113), Expect = 6e-06
Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 50/243 (20%)
Query: 162 EAEKVDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220
+ D N A Q Y G E A NLDK + +P+ ++A ++
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-- 78
Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
G+ E+ E S FR + + N + + L Q ++ A + F ++I DP
Sbjct: 79 -GELEKAEDS---FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DP---- 129
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
LY A + E G ++ G ++A K +A
Sbjct: 130 LYPQPAR----------------------------SLENAGLCALKAGDFDKAEKYLTRA 161
Query: 341 LPLARDEA----ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
L + EL+ +Y LR ERY + S L I+ R
Sbjct: 162 LQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL------WLGIRIARA 215
Query: 397 NND 399
D
Sbjct: 216 LGD 218
Score = 36.2 bits (84), Expect = 0.031
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D A +LD+A + DP+ +Y Y G+ E+A + + + LNPN
Sbjct: 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97
Score = 35.0 bits (81), Expect = 0.063
Identities = 50/233 (21%), Positives = 81/233 (34%), Gaps = 52/233 (22%)
Query: 78 LTAIRHCTEEIESTSS-NHTKAL-ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
LT + S+ + + KA R+ A Y+ A E+L + +E DP
Sbjct: 9 LTGCVTTPDVPRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDDY 65
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
A++ A+ + KA A ++PN D G C G+YE+A++ +
Sbjct: 66 -LAYLALALY-YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
+ I AR+ N C L
Sbjct: 124 QAIEDPLYPQPARS------------------------LENAG--------LCAL----- 146
Query: 256 VDQEDFDGAEEYFNRSIRVDPENA-SLY--VHRAMLMLQARGNVDEAIKLIEK 305
DFD AE+Y R++++DP+ SL L RG +A +E+
Sbjct: 147 -KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARAYLER 194
Score = 30.0 bits (68), Expect = 2.5
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 474 EAEKVDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---HVARA 521
+ D N A Q Y G E A NLDK + +P+ ++A A
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALA 72
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
A+ + D+D A ++ P A + +L+ +G + EA L+ A++ D
Sbjct: 4 ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLR-QGRLAEAAALLRAALAAD 61
Score = 35.4 bits (82), Expect = 0.005
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
A D+ +A A L+ A P A++ G+ G+ EA L +A +P+
Sbjct: 9 RAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
Score = 35.4 bits (82), Expect = 0.005
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
A D+ +A A L+ A P A++ G+ G+ EA L +A +P+
Sbjct: 9 RAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
Score = 31.9 bits (73), Expect = 0.088
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
A L+A G+ DEA+ +E A++ A LG +++GRL EA AL
Sbjct: 3 LARAALRA-GDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 345 RDEA 348
D+
Sbjct: 62 PDDP 65
Score = 27.3 bits (61), Expect = 3.9
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
+++L + + EA L + L+ Q A ++ DP++
Sbjct: 9 RAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65
>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 46.0 bits (110), Expect = 3e-05
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
ARG++D A L++KA++ D C+ A LG + + +G A++
Sbjct: 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEAL 237
Score = 34.8 bits (81), Expect = 0.12
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
R ++ + + + V A L + + Q D+ A E R DPE S +
Sbjct: 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+ M QA G+ E ++ + +A+ L + ++ E A
Sbjct: 253 PKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAA 301
Score = 34.0 bits (79), Expect = 0.17
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 18/118 (15%)
Query: 95 HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH------ 148
AL +LL +Y KAI+ +L + ++ + H +
Sbjct: 140 AEGALQQLL--EIYQQEKDWQKAIDVAERLEKLGG--------DSLRVEIAHFYCELAQQ 189
Query: 149 --AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
A D A A L +A DP + G + G Y A+ L++ +P +
Sbjct: 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247
Score = 33.2 bits (77), Expect = 0.30
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A D A A L +A DP + G + G Y A+ L++ +P +
Sbjct: 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247
Score = 28.6 bits (65), Expect = 9.6
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKAI 307
AQ + + D D A +++ DP+ RA ++L A+G+ AI+ +E+
Sbjct: 187 AQQALARGDLDAARALLKKALAADPQCV-----RASILLGDLALAQGDYAAAIEALERVE 241
Query: 308 SIDKS--------CMFAYETLGTIEVQRGRLEEAV 334
D M Y+ LG L A+
Sbjct: 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 40.1 bits (95), Expect = 4e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
A + Y G Y G+Y+EAL +K + LNPN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 40.1 bits (95), Expect = 4e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A + Y G Y G+Y+EAL +K + LNPN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 30.1 bits (69), Expect = 0.16
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A LG ++ G+ +EA++ + KAL L +
Sbjct: 3 ALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
Score = 29.7 bits (68), Expect = 0.25
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPEN 278
+ +D A EY+ +++ ++P N
Sbjct: 8 GNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 26.6 bits (60), Expect = 2.7
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
A + G DEA++ EKA+ ++ +
Sbjct: 1 AKALYNLGNA-YLKLGKYDEALEYYEKALELNPNN 34
>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 287
Score = 45.1 bits (107), Expect = 5e-05
Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 2/131 (1%)
Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
P + +E + + + E L + + A + ++R+ +N
Sbjct: 132 PPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191
Query: 281 LYVHRA-MLMLQARGNVD-EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
+ + A L QA + +A L+ +A+++D + + A L ++G EA +
Sbjct: 192 ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ 251
Query: 339 KALPLARDEAE 349
L L +
Sbjct: 252 MLLDLLPADDP 262
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
A++ Y G Y G Y+EAL +K + L+PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A++ Y G Y G Y+EAL +K + L+PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 32.0 bits (74), Expect = 0.042
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
EA + D+D A EY+ +++ +DP N
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A LG ++ G +EA++ + KAL L +
Sbjct: 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
Score = 25.5 bits (57), Expect = 6.8
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
A + G+ DEA++ EKA+ +D +
Sbjct: 1 AEALYNLG-NAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 42.4 bits (100), Expect = 3e-04
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 45/170 (26%)
Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
D A ++ A+ +L D+ +A +L++A + DP+ ++ R Y G+ + A
Sbjct: 30 DRNEAAKARLQLALGYL-QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLA 88
Query: 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD-----------RERVEQSLKEFRNFV- 238
+ K ++L PN GD + R E+++++F +
Sbjct: 89 DESYRKALSLAPN-----------------NGDVLNNYGAFLCAQGRPEEAMQQFERALA 131
Query: 239 --------DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
DT N+ C L FD AEEY R++ +DP+
Sbjct: 132 DPAYGEPSDTLENLG-LCAL------KAGQFDQAEEYLKRALELDPQFPP 174
Score = 37.0 bits (86), Expect = 0.015
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
E A + A+ LQ G+ +A K +EKA+ D S A+ + G + A +
Sbjct: 33 EAAKARLQLALGYLQQ-GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADES 91
Query: 337 FNKALPLARDEAEL 350
+ KAL LA + ++
Sbjct: 92 YRKALSLAPNNGDV 105
Score = 35.9 bits (83), Expect = 0.037
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ +A +L++A + DP+ ++ R Y G+ + A + K ++L PN
Sbjct: 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 40.5 bits (95), Expect = 0.002
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---GNVDEAIKLIEKAISIDKSCMF 315
+DF A + + ++I +DP NA LY RA QA GN EA+ KAI +D S
Sbjct: 16 DDFALAVDLYTQAIDLDPNNAELYADRA----QANIKLGNFTEAVADANKAIELDPSLAK 71
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
AY GT ++ + A K LA ++
Sbjct: 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104
Score = 35.1 bits (81), Expect = 0.077
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
LE+++ + DF A +A +DPN A+ Y R Q G + EA+ + +K I
Sbjct: 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64
Query: 512 LNPNFHVA 519
L+P+ A
Sbjct: 65 LDPSLAKA 72
Score = 35.1 bits (81), Expect = 0.081
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
DF A +A +DPN A+ Y R Q G + EA+ + +K I L+P+ A
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72
Score = 34.0 bits (78), Expect = 0.18
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 44/142 (30%)
Query: 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
DL KAK AF +D+ A+ T+ I+ +N A +Y +Q
Sbjct: 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----------AELYADRAQ--------- 44
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
A+IK +FT+A AD ++A ++DP++A +Y ++G C
Sbjct: 45 ---------------ANIK--------LGNFTEAVADANKAIELDPSLAKAYLRKG-TAC 80
Query: 183 L-FGQYEEALRNLDKTIALNPN 203
+ +Y+ A L+K +L P
Sbjct: 81 MKLEEYQTAKAALEKGASLAPG 102
Score = 32.1 bits (73), Expect = 0.78
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 440 TKTIEESEKYGNLENESGQKHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL-FG 497
T+ I+ L + Q + +FT+A AD ++A ++DP++A +Y ++G C+
Sbjct: 26 TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG-TACMKLE 84
Query: 498 QYEEALRNLDKTIALNPN 515
+Y+ A L+K +L P
Sbjct: 85 EYQTAKAALEKGASLAPG 102
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 34.1 bits (79), Expect = 0.007
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 160 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192
++A ++DPN A++YY + GQY+EAL+
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
Score = 34.1 bits (79), Expect = 0.007
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 504
++A ++DPN A++YY + GQY+EAL+
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
Score = 31.0 bits (71), Expect = 0.094
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
+ +++ +DP NA Y + A+L L G DEA++
Sbjct: 1 LYEKALELDPNNAEAYYNLALL-LLNLGQYDEALQ 34
>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export
porin PgaA. Members of this protein family are the
poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin
PgaA of Gram-negative bacteria. There is no counterpart
in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis
systems of Gram-positive bacteria such as Staphylococcus
epidermidis. The PGA polysaccharide adhesin is a
critical determinant of biofilm formation. The conserved
C-terminal domain of this outer membrane protein is
preceded by a variable number of TPR repeats.
Length = 800
Score = 38.1 bits (89), Expect = 0.012
Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 14/196 (7%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
+ AD Y + I G AL L + P + R ++ + G +
Sbjct: 16 ASPADEKYDQLIIQARAGDTAPALSGLQQLYRKTP---LDRKVLDDLLAVLSWAGRDKEA 72
Query: 228 EQSLKEFR--NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
+ + V + V+EA A+ +++ +D A E + + ++ DP N +
Sbjct: 73 ---IDVCERYSPVGLPARVLEA---LAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGL 126
Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
A+ + A G EA+K +++ ++ + YE L + +A++ + +AL L
Sbjct: 127 ALTLADA-GKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEDHLDALQAWQQALTLEP 185
Query: 346 DEAELSHIYSLRDAAI 361
D E L
Sbjct: 186 DNPEA--ALELYRILT 199
>gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 37.9 bits (88), Expect = 0.013
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
S++ +A + P AD Y G + GQ EEAL+ +++ + L+P
Sbjct: 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404
Score = 37.9 bits (88), Expect = 0.013
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
S++ +A + P AD Y G + GQ EEAL+ +++ + L+P
Sbjct: 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 38.1 bits (89), Expect = 0.014
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-------V 206
KA +L +A + +P +++ GQ Y G A+ +K +AL+P+ +
Sbjct: 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345
Query: 207 ARAQRHFVVHKMIVPGDRE-------RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259
+ R++++ I GD + E+ ++ R +T S V V + ++
Sbjct: 346 LKVNRYWLL---IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLG---LGDVAMARK 399
Query: 260 DFDGAEEYFNRSIRVDPENAS 280
D+ AE Y+ +++R+DP N +
Sbjct: 400 DYAAAERYYQQALRMDPGNTN 420
Score = 32.0 bits (73), Expect = 1.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
KA +L +A + +P +++ GQ Y G A+ +K +AL+P+
Sbjct: 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335
Score = 30.4 bits (69), Expect = 3.1
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS------- 280
+++ E + V + EA Q Q D A F +++ +DP +++
Sbjct: 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345
Query: 281 LYVHRAMLMLQ------ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334
L V+R L++Q N+ +A +L ++A +D + +A LG + + R A
Sbjct: 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405
Query: 335 KCFNKALPLARD 346
+ + +AL +
Sbjct: 406 RYYQQALRMDPG 417
>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism].
Length = 389
Score = 37.4 bits (87), Expect = 0.015
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335
E A Y A L A +VD A +L++KA+ DK C+ A LG +E+ +G ++AV+
Sbjct: 178 EIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235
Score = 36.6 bits (85), Expect = 0.028
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI--KRAVVHLHAASDFTK 155
AL +LL +Y T + KAI+ +LV+ ++++ A + A L A+SD +
Sbjct: 143 ALQQLL--NIYQATREWEKAIDVAERLVKLGGQTYRVEI-AQFYCELAQQAL-ASSDVDR 198
Query: 156 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215
A L +A + D + G++ G Y++A+ L++ + NP +
Sbjct: 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----------- 247
Query: 216 HKMIVPGDRERVEQ--SLKEFRNF----VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
++ E Q E NF ++T++ +A + A ++ QE D A+ Y
Sbjct: 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLT 306
Query: 270 RSIRVDP 276
R +R P
Sbjct: 307 RQLRRKP 313
Score = 33.1 bits (76), Expect = 0.35
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A+SD +A L +A + D + G++ G Y++A+ L++ + NP +
Sbjct: 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 36.6 bits (85), Expect = 0.020
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
+F A ++ R+ P + + + Q G DEA + +A+ + +
Sbjct: 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIA 171
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARD 346
LG + RG LE+A A
Sbjct: 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAA 200
Score = 34.7 bits (80), Expect = 0.084
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 278 NASLYVHRAMLMLQAR-GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
+ A Q R GN EA+ ++ KA + + A+ LG Q GR +EA +
Sbjct: 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRA 156
Query: 337 FNKALPLARDEAE----LSHIYSLRD 358
+ +AL LA +E L LR
Sbjct: 157 YRQALELAPNEPSIANNLGMSLLLRG 182
Score = 34.7 bits (80), Expect = 0.088
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
+A L ++ A +R +PE+ S+ L L RG+ D ++ +++K
Sbjct: 35 KATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYL--RGDADSSLAVLQK 91
Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
+ G +++ G EAV KA LA + E ++L AA+ Q
Sbjct: 92 SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---WNLLGAALDQ 146
Score = 31.3 bits (71), Expect = 1.2
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 91 TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA 150
+ + L+ AT + ++ L + D ++ + A K +
Sbjct: 59 AVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDREL-LAAQGKNQI----RN 113
Query: 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+F +A + L +A ++ P +++ G G+++EA R + + L PN
Sbjct: 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166
Score = 28.6 bits (64), Expect = 7.4
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
+++ R EA L L FD A + +++ + P S+
Sbjct: 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172
Query: 284 HRAMLMLQARGNVDEAIKLIEKAIS 308
+ M +L RG++++A L+ A
Sbjct: 173 NLGMSLL-LRGDLEDAETLLLPAYL 196
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 32.9 bits (76), Expect = 0.021
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
A++ Y G Y G YEEAL +K + L+PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 32.9 bits (76), Expect = 0.021
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A++ Y G Y G YEEAL +K + L+PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 29.4 bits (67), Expect = 0.33
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKAL 341
A LG + G EEA++ + KAL
Sbjct: 3 ALYNLGLAYYKLGDYEEALEAYEKAL 28
Score = 29.4 bits (67), Expect = 0.35
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
EA D++ A E + +++ +DP N
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 27.1 bits (61), Expect = 2.4
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
A + + + G+ +EA++ EKA+ +D
Sbjct: 1 AEALYNLGLAYYK-LGDYEEALEAYEKALELD 31
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 32.1 bits (74), Expect = 0.033
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
A +YY GQIY G YEEA +K + L+PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
Score = 32.1 bits (74), Expect = 0.033
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A +YY GQIY G YEEA +K + L+PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
Score = 28.6 bits (65), Expect = 0.60
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
A Y + LQ G+ +EA + EKA+ +D +
Sbjct: 1 ARAYYLLGQIYLQL-GDYEEAKEYYEKALELDPNN 34
Score = 28.6 bits (65), Expect = 0.64
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
A L Q+ + D++ A+EY+ +++ +DP N
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
Score = 28.2 bits (64), Expect = 0.88
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKAL 341
AY LG I +Q G EEA + + KAL
Sbjct: 3 AYYLLGQIYLQLGDYEEAKEYYEKAL 28
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 36.2 bits (84), Expect = 0.041
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 23/133 (17%)
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPN---FHVARAQRHFVVHKMIVPGDRERVEQSL 231
Y R L GQY+EAL+ L IA P+ + + + ++++
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------EANKAKEAI 360
Query: 232 KEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289
+ + + D +S +++ AQ L+ A NR + DPE+ + + L+
Sbjct: 361 ERLKKALALDPNSPLLQ--LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW----DLL 414
Query: 290 LQAR---GNVDEA 299
QA GN EA
Sbjct: 415 AQAYAELGNRAEA 427
Score = 33.9 bits (78), Expect = 0.24
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309
L +L++ A E +++ +DP + L ++ A +L+ G EAI+++ + +
Sbjct: 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG-GKPQEAIRILNRYLFN 403
Query: 310 DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA--RDEAELSHIYSLRDAAIAQMKV 366
D ++ L + G EA+ + LA ++A A Q+K+
Sbjct: 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQA-----IIFLMRASQQVKL 457
Score = 30.1 bits (68), Expect = 3.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQ--RGQIYCLFGQYEEALRNLDKTIALNPN 515
Q + A + +A L P+ + YY G I + +EA+ L K +AL+PN
Sbjct: 315 QTYLAGQYDEALKLLQPLIAAQPD--NPYYLELAGDILLEANKAKEAIERLKKALALDPN 372
>gnl|CDD|220706 pfam10345, Cohesin_load, Cohesin loading factor. Cohesin_load is a
common cohesin loading factor protein that is conserved
in fungi. It is associated with the cohesin complex and
is required in G1 for cohesin binding to chromosomes but
dispensable in G2 when cohesion has been established. It
is referred to as both Ssl3, in pombe, and Scc4, in
S.cerevisiae. It complexes with Mis4.
Length = 592
Score = 36.2 bits (84), Expect = 0.047
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 80 AIRHCTEEIESTSSNHTKALA---RLLRATVYIFTSQSTKAIEDLTQLVEDTSV--DPKI 134
A++ + IE + A RLL+ + + + A+E+L L E + D K+
Sbjct: 119 ALKSLNKLIEDAETYQHNAWVYAFRLLKIQLLLQSGDLAAALENLQSLAELANRRGDRKL 178
Query: 135 KVNAHIKRAVVHL 147
V + A++HL
Sbjct: 179 FVVLSLLEALLHL 191
>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat.
Length = 44
Score = 30.2 bits (68), Expect = 0.23
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
A+ L+ D D A R++ +DP++ + A L
Sbjct: 8 ARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+ + G +EAL L + +AL+P+ A
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLL 41
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ + G +EAL L + +AL+P+ A
Sbjct: 1 PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLL 41
>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. Genes in this family are found in
type III secretion operons. LcrH, from Yersinia is
believed to have a regulatory function in the
low-calcium response of the secretion system. The same
protein is also known as SycD (SYC = Specific Yop
Chaperone) for its chaperone role. In Pseudomonas, where
the homolog is known as PcrH, the chaperone role has
been demonstrated and the regulatory role appears to be
absent. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 31.1 bits (71), Expect = 0.54
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
++ +A A +DP+ Y+ + G+ E AL+ LD I +
Sbjct: 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117
Score = 30.7 bits (70), Expect = 0.70
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
++ +A A +DP+ Y+ + G+ E AL+ LD I +
Sbjct: 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 32.2 bits (74), Expect = 0.85
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGRLEEA 333
E++ L +++ L+ ++ G+++EA++ +E+ +K + E + ++ GR EEA
Sbjct: 2 EHSELLLYKNSLIEES-GDLEEALEHLEE---KEKQIVDRLAVMEMRADLLLKLGRKEEA 57
Query: 334 VKCF 337
+
Sbjct: 58 EATY 61
>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat.
Length = 73
Score = 29.1 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
DF +A A ++ + P+ RG +Y G ++ AL +L+ + L P+ A R
Sbjct: 10 DFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAPDAERIR 69
Score = 29.1 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
DF +A A ++ + P+ RG +Y G ++ AL +L+ + L P+ A R
Sbjct: 10 DFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAPDAERIR 69
Score = 28.3 bits (64), Expect = 1.9
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
+ + +EDF+ A R + + P++ R +L G A+ +E + +
Sbjct: 3 AIYLREEDFERALAVVERLLLLAPDDPYERRDRGLL-YAQLGCFQAALADLEYFLELC 59
>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat.
Length = 33
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ Y+ Y G +EA L++ + P+
Sbjct: 1 DALYKLALAYLKLGDTDEAKEALERLLKRYPD 32
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ Y+ Y G +EA L++ + P+
Sbjct: 1 DALYKLALAYLKLGDTDEAKEALERLLKRYPD 32
>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 207
Score = 30.8 bits (70), Expect = 1.2
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309
A+ V+ + D AE +++ D +L R + + D A+K ++
Sbjct: 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155
Query: 310 DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
+ + A E G I + +G +EA + KAL A I QMK
Sbjct: 156 SWAAIVA-ELRGDILLAKGDKQEARAAYEKALESDASPAA---------REILQMK 201
>gnl|CDD|147106 pfam04781, DUF627, Protein of unknown function (DUF627). This
family represents the N-terminal region of several plant
proteins of unknown function.
Length = 112
Score = 30.0 bits (68), Expect = 1.2
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 292 ARGNVDEAIKLIEKAISI---DKSCMFAYETLGTIEVQRGRLEE-----------AVKCF 337
A+G+ +A+++IE +IS D+S + GTI V+ + E +V+CF
Sbjct: 8 AKGDYIKALEIIEDSISDHGKDESAWLLHILQGTIFVKLAKKTENPDVKFTYLLGSVECF 67
Query: 338 NKALPLARDEA 348
++ + L+ D A
Sbjct: 68 SEDVLLSPDAA 78
>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 30.9 bits (70), Expect = 1.5
Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 118 IEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA--DLDEAEKVDPNVADSYY 175
+ ++Q++ ++ + + +R V++ S +A A D +A + P++ + +
Sbjct: 47 LARMSQILASRALTDEERAQLLFERGVLY---DSLGLRALARNDFSQALAIRPDMPEVFN 103
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
G G ++ A D + L+P ++ A R
Sbjct: 104 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139
Score = 28.2 bits (63), Expect = 9.7
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
D +A + P++ + + G G ++ A D + L+P ++ A R
Sbjct: 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 31.2 bits (71), Expect = 1.8
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 186 QYEEALRNLDKTIALNPNFHVARAQRHFVVH--KMIVPGDRERVEQSLKEFRNFVDT--- 240
+A L++ + P+F A+A++ P D +++ E N V
Sbjct: 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416
Query: 241 --HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
+ E + A V + D A + N++I
Sbjct: 417 NVLPRIYEILAVQALV---KGKTDEAYQAINKAID 448
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 30.0 bits (68), Expect = 1.8
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300
+EA A+ L+ + A R + +DP L+ M L G EA+
Sbjct: 61 LEALEALAEALLALGRHEEALALLERLLALDPLRERLH-RLLMRALYRAGRRAEAL 115
>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
Members of this protein family include YfiO, a
near-essential protein of the outer membrane, part of a
complex involved in protein insertion into the bacterial
outer membrane. Many proteins in this family are
annotated as ComL, based on the involvement of this
protein in natural transformation with exogenous DNA in
Neisseria gonorrhoeae. This protein family shows
sequence similarity to, but is distinct from, the
tol-pal system protein YbgF (TIGR02795) [Protein fate,
Protein and peptide secretion and trafficking].
Length = 235
Score = 30.6 bits (70), Expect = 1.9
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 150 ASDFTKAFADLDE----------AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199
+ D+T+A + AE+ ++A +YY+ G Y EA+ D+ I
Sbjct: 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-------YAEAIAAADRFIR 98
Query: 200 LNPNF-HVARAQ-RHFVVH-KMIVPGDR--ERVEQSLKEFRNFVDTHSN 243
L+PN A + + I DR ++ + F+ + + N
Sbjct: 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147
>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 30.6 bits (70), Expect = 2.0
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 121 LTQLVEDTSVDPKIKVNAHIKRAVVH------LHAASDFTKAFADLDEAEKVDPNVADSY 174
L Q++ + + + H +R V++ A +DF++A + P++AD+Y
Sbjct: 49 LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL-------ALRPDMADAY 101
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
G G ++ A D + L+P ++ A R
Sbjct: 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138
Score = 29.5 bits (67), Expect = 4.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
D +A + P++AD+Y G G ++ A D + L+P ++ A R
Sbjct: 86 DFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase. Formiminoglutamase, the
fourth enzyme of histidine degradation, is similar to
arginases and agmatinases. It is often encoded near
other enzymes of the histidine degredation pathway:
histidine ammonia-lyase, urocanate hydratase, and
imidazolonepropionase [Energy metabolism, Amino acids
and amines].
Length = 307
Score = 30.5 bits (69), Expect = 2.2
Identities = 47/247 (19%), Positives = 70/247 (28%), Gaps = 56/247 (22%)
Query: 17 RSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHED 76
KPS I T+ L L GV G H + ++A H
Sbjct: 17 HQVTKPS-DLIATWDDQDEKGVALIGFPLDKGVIRNKGRRGARHGPSAI---RQALAHLG 72
Query: 77 YLTA---------IRHCTEEIESTSSNHTKALARLL---RATVYIF--TSQSTKAIEDLT 122
I +++E T + A LL R V + S + L
Sbjct: 73 DWHVSELLYDLGDIVIHGDDLEDTQHEIAQTAAALLADHRVPVILGGGHSIAYATFAALA 132
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ------ 176
Q + T+ I +AH DL E P + Q
Sbjct: 133 QHYKGTTAIGVINFDAHF------------------DLRATEDGGPTSGTPFRQILDECQ 174
Query: 177 -RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH---FVVHKMIVPGDRERVEQSLK 232
Y + G +R T AL A++ +V + PG ++ L
Sbjct: 175 IEDFHYAVLG-----IRRFSNTQAL-----FDYAKKLGVRYVTDDALRPGLLPTIKDILP 224
Query: 233 EFRNFVD 239
F + VD
Sbjct: 225 VFLDKVD 231
>gnl|CDD|227277 COG4941, COG4941, Predicted RNA polymerase sigma factor containing
a TPR repeat domain [Transcription].
Length = 415
Score = 30.1 bits (68), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 326 QRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
+ GR+EEA +++A+ LAR+ AE + + D
Sbjct: 377 RLGRVEEARAAYDRAIALARNAAERAFLRQRLDR 410
>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein.
Members of this protein family are uncharacterized
tetratricopeptide repeat (TPR) proteins invariably found
in heme biosynthesis gene clusters. The absence of any
invariant residues other than Ala argues against this
protein serving as an enzyme per se. The gene symbol
hemY assigned in E. coli is unfortunate in that an
unrelated protein, protoporphyrinogen oxidase (HemG in
E. coli) is designated HemY in Bacillus subtilis
[Unknown function, General].
Length = 367
Score = 29.9 bits (68), Expect = 3.2
Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 29/232 (12%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
LL++A+ + DY A + +++ + HT L LRA Y + ++ L
Sbjct: 137 LLTRAELLLDQRDYEAA-LAALDSLQAQAPRHTAVLRLALRA--YQRSGNWDALLK-LLP 192
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHL------HAASDFTKAFADLDEAEKVDPNVADSYYQR 177
+ + ++A + L A + L AE+ +P +A + +
Sbjct: 193 ALRKAKALSPEEAARLEQQAYIGLLDEAREEDADALKTWWKQLPRAERQEPELAVAAAEA 252
Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237
G ++EA + +++ + + + R + PGD + + +++
Sbjct: 253 ---LIQLGDHDEAEKLIEEALKKEWDPELLRLYGR------LQPGDPSPLIKRAEKWL-- 301
Query: 238 VDTHSNVVEACTLFA--QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+ +A L A ++ + Q+ + A+ Y S+ + P + H +
Sbjct: 302 ---KKHPDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAP---TEEAHLEL 347
Score = 29.2 bits (66), Expect = 6.9
Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 46/161 (28%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR---NLDKTIALNPNFHVAR 208
D+ A A LD + P + Y G ++ L+ L K AL+P A
Sbjct: 149 DYEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALSPE--EAA 206
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
L E R +ED D + ++
Sbjct: 207 RLEQQAY------------IGLLDEAR----------------------EEDADALKTWW 232
Query: 269 N---RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
R+ R +PE A L G+ DEA KLIE+A
Sbjct: 233 KQLPRAERQEPELAVAAAEA----LIQLGDHDEAEKLIEEA 269
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 29.1 bits (66), Expect = 4.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 197 TIALNPNFHVARAQRHFVVHKMI 219
I NP FH +A + V + I
Sbjct: 101 LIISNPPFHAGKATDYDVAQRFI 123
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes) is
one of the lid subunits of the 26S proteasome and has
been shown in Saccharomyces cerevisiae to be required
for structural integrity. The 26S proteasome is is
involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 28.7 bits (65), Expect = 4.9
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 158 ADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
A+L +A++ + + + Y G E AL+ +
Sbjct: 21 AELKDAKENLGKEEIRRALLDLAEHYAKIGDLENALKAYSRA 62
Score = 28.7 bits (65), Expect = 4.9
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 470 ADLDEAEK--VDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 509
A+L +A++ + + + Y G E AL+ +
Sbjct: 21 AELKDAKENLGKEEIRRALLDLAEHYAKIGDLENALKAYSRA 62
>gnl|CDD|225461 COG2909, MalT, ATP-dependent transcriptional regulator
[Transcription].
Length = 894
Score = 29.7 bits (67), Expect = 5.0
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 24/179 (13%)
Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL-- 194
+ A+ H AA D A ADL E + + ++ L A
Sbjct: 360 HGLPSEAIDHALAAGDPEMA-ADLLE------QLEWQLFNGSELSLL-----LAWLKALP 407
Query: 195 DKTIALNPNFHVARAQRHFVVHKMI-VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253
+ +A P + +A H++ R+E LK + + E L AQ
Sbjct: 408 AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQG-DLLAEFQALRAQ 466
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA------MLMLQARGNVDEAIKLIEKA 306
V +++ D + AE+ ++ PE A Y R RG + +A+ L+++A
Sbjct: 467 VALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSVLGEAAHIRGELTQALALMQQA 523
>gnl|CDD|226862 COG4455, ImpE, Protein of avirulence locus involved in
temperature-dependent protein secretion [General
function prediction only].
Length = 273
Score = 29.4 bits (66), Expect = 5.1
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRH 212
A + K P A + Q+ C+ G +E+AL L+ L+P V A RH
Sbjct: 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77
Query: 213 FV 214
+
Sbjct: 78 LI 79
Score = 29.4 bits (66), Expect = 5.1
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRH 524
A + K P A + Q+ C+ G +E+AL L+ L+P V A RH
Sbjct: 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77
Query: 525 FV 526
+
Sbjct: 78 LI 79
>gnl|CDD|227825 COG5538, SEC66, Endoplasmic reticulum translocation complex,
subunit SEC66 [Cell motility and secretion].
Length = 180
Score = 28.8 bits (64), Expect = 5.1
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 29/155 (18%)
Query: 256 VDQEDFDGAEE---YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
D+E F E YF + + AS +A L+ +A +KL +
Sbjct: 36 GDEEWFSENLELEVYF--LQKSENPGASSSTLKAALVKRAAEFKRRVMKLKKDM------ 87
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ-------MK 365
E L T+ EE + FN+ EL I +A I Q K
Sbjct: 88 -----EVLNTLYEDGMIGEEHWERFNEE----SKNCELERIDIESEANILQPGWGQEIFK 138
Query: 366 VCERYNIKKKVSPRSQNITKNEKLAIK--QLRENN 398
C + + + PR I K+ L K ++ E
Sbjct: 139 DCSEISENETIGPRKGKIPKDGTLYQKKWEVLELE 173
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 29.3 bits (66), Expect = 5.4
Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 16/239 (6%)
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
L E + + + RA + L D+ A ++D+ ++ P + + Y
Sbjct: 141 LAEAAELAGDDTLAVELTRARLLL-NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR 199
Query: 184 FGQYEEA---LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240
G ++ L L K L+ AR ++ + D E ++N
Sbjct: 200 LGAWQALLAILPKLRKAGLLSDE-EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK 258
Query: 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVDE 298
N E +A+ L+ D D A+E +++ DP L L+
Sbjct: 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPR-----LRPGDPEPL 313
Query: 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR---DEAELSHIY 354
IK EK + TLG + ++ +A + AL L D AEL+
Sbjct: 314 -IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371
>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 304
Score = 29.2 bits (66), Expect = 5.7
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 61 ELDLLSKAKRAFEHEDY---LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKA 117
E + L++AK E ED+ ++ + + A+LL A + A
Sbjct: 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAP------ENSEAKLLLAECLLAAGDVEAA 187
Query: 118 IEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177
L L + A I+ + AA+ T DL DP+ ++
Sbjct: 188 QAILAALPLQAQDKAAHGLQAQIE---LLEQAAA--TPEIQDLQRRLAADPDDVEAALAL 242
Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214
L G+ E AL +L + + F A++ +
Sbjct: 243 ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like
protein. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 and LANCL2 (testes-specific adriamycin
sensitivity protein) are thought to be peptide-modifying
enzyme components in eukaryotic cells. Both proteins are
produced in large quantities in the brain and testes and
may have role in the immune surveillance of these
organs.
Length = 343
Score = 29.2 bits (66), Expect = 5.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEI 88
LL+KA F+ E YL A C E I
Sbjct: 232 LLAKAYLVFKEEQYLEAAIKCGELI 256
>gnl|CDD|222772 PHA00019, IV, phage assembly protein.
Length = 428
Score = 29.4 bits (66), Expect = 6.0
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 400 IIIRPADKGGKTVV---MDKADYTQKMTSILNSNDYEIIPGDP 439
+++ P KG TV ++ A+ Q S+L +N ++++ G P
Sbjct: 48 VVLGPDVKGNVTVYSADVNPANLPQFFDSVLRANGFDLVAGGP 90
>gnl|CDD|216149 pfam00848, Ring_hydroxyl_A, Ring hydroxylating alpha subunit
(catalytic domain). This family is the catalytic domain
of aromatic-ring- hydroxylating dioxygenase systems. The
active site contains a non-heme ferrous ion coordinated
by three ligands.
Length = 201
Score = 28.6 bits (64), Expect = 6.2
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 432 YEIIPGDPTKTIEESEKY---GNLENESGQKHAASDFTKAFADLDEA--EKVDPNVADSY 486
Y IIP P +T + Y L +E + + + + D+ E+V +
Sbjct: 115 YRIIPLSPDRTRVRVDLYVHPDALASEDAAEALVAVWDRTVNSEDKELCERVQRGLRSGA 174
Query: 487 YQRGQIYCLFGQYEEALRNLDKTIA 511
Y+ G L G E+ +R+ + +
Sbjct: 175 YEPGP---LSGDSEKGVRHFHRWLL 196
>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 29.5 bits (66), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
Q++ A DL + + P+ A++Y R IY A+ +L + L PN
Sbjct: 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641
>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 28.8 bits (65), Expect = 7.4
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKM--IVPGDRERVEQSLKEFRNFVDTHSNV 244
Y+ L++L L +++ H + R+ V ++L+ V H
Sbjct: 271 YDRLLKDLPYFTPLTIPLG-SKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIP 329
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
V + Q D AE ++ I SL +H A+ + Q + V+ K+
Sbjct: 330 VHLQPYYRQ-GFGDGDLPSAENFYLAEI-------SLPLHPALTLEQQQRVVETLRKV 379
>gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 262
Score = 28.6 bits (64), Expect = 7.5
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 234 FRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
F+ F+ + N A + L Q D++ A F R ++ P++ A+L L
Sbjct: 164 FQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK--APDALLKL 221
Query: 291 ----QARGNVDEAIKLIEKAIS 308
GN DEA +++ I
Sbjct: 222 GVSLGRLGNTDEACATLQQVIK 243
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 28.6 bits (64), Expect = 7.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDII 401
++K CER + + +N T+ E L++ + + I
Sbjct: 51 MKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNI 90
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 29.3 bits (65), Expect = 7.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 155 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
K+F+ + AE V PN+ ++ YC +E ++
Sbjct: 1 KSFSHSEMAEMVLPNLPAVRFREECCYCFRSIGDEHSISV 40
Score = 29.3 bits (65), Expect = 7.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 467 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
K+F+ + AE V PN+ ++ YC +E ++
Sbjct: 1 KSFSHSEMAEMVLPNLPAVRFREECCYCFRSIGDEHSISV 40
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 28.6 bits (64), Expect = 9.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 205 HVARA-----QRHFVVHKMIVPGDRERVEQSLKEFRNFV 238
VA+A R + + MI GD E+ E LKE + FV
Sbjct: 126 EVAKAVEESGLRAALSYGMIDLGDDEKGEAELKEGKRFV 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,355,519
Number of extensions: 2822362
Number of successful extensions: 3250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3127
Number of HSP's successfully gapped: 201
Length of query: 551
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 449
Effective length of database: 6,413,494
Effective search space: 2879658806
Effective search space used: 2879658806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)