RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12713
(551 letters)
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 211 bits (538), Expect = 7e-62
Identities = 79/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)
Query: 7 AQHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLS 66
+ +E + PS + ++ F + E N L S
Sbjct: 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN--YDESNEADKELMNGLSNLYKRS 201
Query: 67 KAKRAFEHEDYLTAIRHCTEEIESTSS----NHTKALARLLRATVYIFTSQSTKAIEDLT 122
E + A R E+++ + A++ + A ED+
Sbjct: 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
+ +E + P++ N++I A++ +D T+ + D+A K+D N + YY RGQ+
Sbjct: 262 KAIE---LFPRV--NSYIYMALIMADR-NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315
Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
+ Y++A ++ DK L+P Q + ++ + + F
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE------NKFDDCETLFSEAKRKFP 369
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------G 294
E FA++L D+ DFD A + ++ +I ++ + +YV A L+ +A
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
N EA L+EKA +D A L +++Q+ ++EA+ F ++ LAR E
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
Query: 355 SLRDAAIAQMKVCERYNIKKKVS 377
+ +AA Q ++ + KK+
Sbjct: 490 TFAEAAKVQQRIRSDPVLAKKIQ 512
Score = 124 bits (314), Expect = 9e-31
Identities = 63/457 (13%), Positives = 126/457 (27%), Gaps = 86/457 (18%)
Query: 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSS---NHTKALARLLRATVYIFTSQSTKAIEDL 121
+SK K F D TA TE + + + L + + + +
Sbjct: 123 MSKLKEKFG--DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180
Query: 122 TQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA-------EKVDPNVADSY 174
+ E N + + + A FTKA +E EK+ +A S
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVVHKMIVPGDRERVEQSLK 232
G L A ++ K I L P ++ A DR +
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA---------DRNDSTEYYN 291
Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
F + SN Q+ +++D A + F+++ +DPEN Y+ A L
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL-AYR 350
Query: 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352
D+ L +A I + ++A+K ++ A+ L
Sbjct: 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--- 407
Query: 353 IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV 412
IY + + + R + A
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENF-----------IEATN-------------------- 436
Query: 413 VMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD 471
+ + L+ + ++ + D +A
Sbjct: 437 -----LLEK---ASKLDPRSEQAK-----------IGLAQMKLQQE------DIDEAITL 471
Query: 472 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
+E+ + + + + + ++ +R+
Sbjct: 472 FEESADLARTMEEKLQ--AITFAEAAKVQQRIRSDPV 506
Score = 116 bits (292), Expect = 6e-28
Identities = 74/496 (14%), Positives = 145/496 (29%), Gaps = 85/496 (17%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
L K + F ++ Y AI++ +E + + Y+ K +E T+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPV---FYSNLSACYVSVGDLKKVVEMSTK 64
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAE-KVDPNVADS--YYQRGQI 180
+E + P ++RA F A DL D N A +R
Sbjct: 65 ALE---LKPDY-SKVLLRRASA-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119
Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR--------------ER 226
+ +E ++D A A+ + +
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179
Query: 227 VEQSLKEFRNFVDTHSNVV--------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
++S + + ++ SN+ +A F + F+ + N ++ +
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA---RLFEEQLDKNNEDEKLKEKL 236
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
A H + + + A + I+KAI + +Y + I R E F+
Sbjct: 237 AISLEHTGIF-KFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFD 294
Query: 339 KALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENN 398
KAL L + + +Y R I + A K +
Sbjct: 295 KALKLDSNNSS---VYYHR--GQM-------NFILQNY-----------DQAGKDF--DK 329
Query: 399 DIIIRPADKGGKTVVMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG 457
+ P + Y Q N ++ ++ + + + N
Sbjct: 330 AKELDP----------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379
Query: 458 QKHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIY---------CLFGQYEEALRNLD 507
+ +DF KA D A +++ + Y + + EA L+
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439
Query: 508 KTIALNPNFHVARAQR 523
K L+P A+
Sbjct: 440 KASKLDPRSEQAKIGL 455
Score = 114 bits (286), Expect = 4e-27
Identities = 48/394 (12%), Positives = 112/394 (28%), Gaps = 90/394 (22%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
A + +G + +Y++A++ + + L + V
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVF-------------------- 41
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+SN + V D E +++ + P+ + + + RA
Sbjct: 42 -------------YSN-------LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81
Query: 288 LMLQARGNVDEAIKLIEKA---ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
+ G +A+ + + + + + +L+E + A
Sbjct: 82 A-NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP 140
Query: 345 RDEAELSH-IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIR 403
+ + + + + + K N ++ + + + +++ R
Sbjct: 141 TELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR 200
Query: 404 PADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKH--- 460
+ K +T+ +E + + EK +G
Sbjct: 201 SPESYDK----ADESFTKAA------RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250
Query: 461 -----AASDFTK--------------------------AFADLDEAEKVDPNVADSYYQR 489
A D K + D+A K+D N + YY R
Sbjct: 251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310
Query: 490 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
GQ+ + Y++A ++ DK L+P Q
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Score = 95.2 bits (237), Expect = 6e-21
Identities = 48/392 (12%), Positives = 91/392 (23%), Gaps = 89/392 (22%)
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
A + + A + A ++ + Y Y G ++ +
Sbjct: 5 YALALKDKGNQ-FFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
K + L P++ +R A
Sbjct: 63 TKALELKPDYSKVLLRR----------------------------------------ASA 82
Query: 255 LVDQEDFDGAEEYFNR-SIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKS 312
F A + S+ D +AS+ L QA + E I+ A +
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNI 372
+ + ++ F + +
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIF---------------------------KPEL 175
Query: 373 KKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY 432
S K + L + + AD+ +T+ +
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADE----------SFTKAA------RLF 219
Query: 433 EIIPGDPTKTIEESEKYGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQ 491
E + + EK +G D A D+ +A ++ P +SY
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278
Query: 492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
I E DK + L+ N R
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310
Score = 54.7 bits (132), Expect = 5e-08
Identities = 11/66 (16%), Positives = 24/66 (36%)
Query: 451 NLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
+ +F +A L++A K+DP + Q+ +EA+ +++
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 511 ALNPNF 516
L
Sbjct: 477 DLARTM 482
Score = 31.3 bits (71), Expect = 0.81
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 464 DFTKAFADLDEAE-KVDPNVADS--YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
F A DL D N A +R + +E ++D A
Sbjct: 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147
Query: 521 AQRHFVWTSTLAELMAFSDEF 541
A+ L + + + F
Sbjct: 148 AKERKDKQENLPSVTSMASFF 168
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 197 bits (503), Expect = 1e-56
Identities = 73/391 (18%), Positives = 149/391 (38%), Gaps = 38/391 (9%)
Query: 8 QHAKEEISKRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELD---- 63
++ ++ + S PS + ++ F + + S+ + +++ +
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
Query: 64 ----LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIE 119
L++ + Y + + T + ALA + + A
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPL---RENAALALCYTGIFHFLKNNLLDAQV 264
Query: 120 DLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 179
L + + + P N++I A+ L + + F +A ++P +YY RGQ
Sbjct: 265 LLQESIN---LHPT--PNSYIFLALT-LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318
Query: 180 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239
+Y + Y+ A + K +LNP Q +++K + +S F
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ------GKFTESEAFFNETKL 372
Query: 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR------ 293
+ E T FA++L D+ DFD A + ++ + R++ ++V L+ +A
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432
Query: 294 ---------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
+ AIKL+ KA +D A L +++Q +++EA++ F + LA
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
Query: 345 RDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
R E + +AA Q ++ I K
Sbjct: 493 RTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
Score = 122 bits (308), Expect = 7e-30
Identities = 50/390 (12%), Positives = 105/390 (26%), Gaps = 85/390 (21%)
Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
G + ++ + L+P+ A A +
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLK------------------------------- 29
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
++F+ A +Y+ +I +DP Y + + + G++++ I+
Sbjct: 30 -----NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTT 83
Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA-----LPLARDEAELSHIYSLRDA 359
KA+ I A + G +A+ + A E L + +
Sbjct: 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM 143
Query: 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR-------ENNDIIIRPADKGGKTV 412
+ + + +V P + ++ + L N D + +
Sbjct: 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203
Query: 413 VMDKADYTQKMTSILNSN--DYEIIPGDPTKTIEESEKY-------GNLENESGQKHAA- 462
+ +L + Y + T E G A
Sbjct: 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263
Query: 463 --------------------------SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
+ + F +A ++P +YY RGQ+Y +
Sbjct: 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323
Query: 497 GQYEEALRNLDKTIALNPNFHVARAQRHFV 526
Y+ A + K +LNP Q +
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Score = 122 bits (307), Expect = 9e-30
Identities = 54/416 (12%), Positives = 124/416 (29%), Gaps = 70/416 (16%)
Query: 103 LRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE 162
L + +S A L+ ++ ++ + + + +
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQR---LYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234
Query: 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVVHKMIV 220
+ + N A + G + L +A L ++I L+P ++ A +
Sbjct: 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLA----LTLA--- 287
Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
D+E ++ K F+ VD + Q+ +D+ A+E F ++ ++PEN
Sbjct: 288 --DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
Y+ A L L +G E+ + + I RG + A+K ++ A
Sbjct: 346 PYIQLACL-LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404
Query: 341 LPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDI 400
L + + I+ I + + R + + + AIK
Sbjct: 405 KRLEEVQEK---IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA----AIK-------- 449
Query: 401 IIRPADKGGKTVVMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459
T+ + L+ + L+ + +
Sbjct: 450 -----------------LLTK---ACELDPRSEQAK-----------IGLAQLKLQMEK- 477
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+A +++ + + + + + ++ LR A
Sbjct: 478 -----IDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMEL 526
Score = 96.7 bits (241), Expect = 2e-21
Identities = 53/442 (11%), Positives = 109/442 (24%), Gaps = 104/442 (23%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
D+ QL + + R A +F +A A ++DPN Y
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNH-FFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
Y G E+ + K + + P+ A +R
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR------------------------ 99
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASLYVHRAMLMLQARG 294
A +F A + S+ D + AS+ + R
Sbjct: 100 ----------------ASANESLGNFTDAMFDLSVLSLNGDFDGASIE------PMLERN 137
Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-- 352
+A+K++ + +S D + L F+ L ++ ++
Sbjct: 138 LNKQAMKVLNENLSKD------EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191
Query: 353 IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV 412
Y+L A+ ++ +++ + D +R
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS-LLSAN--TVDDPLRE-------- 240
Query: 413 VMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKY------GNLENESGQKHAA-SD 464
+ A N+ ++I +
Sbjct: 241 --NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKF 298
Query: 465 FTKA------FAD--------------LDEAEK-------VDPNVADSYYQRGQIYCLFG 497
F KA + A++ ++P Y Q + G
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358
Query: 498 QYEEALRNLDKTIALNPNFHVA 519
++ E+ ++T P
Sbjct: 359 KFTESEAFFNETKLKFPTLPEV 380
Score = 94.0 bits (234), Expect = 1e-20
Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 18/230 (7%)
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
R +Y A ED + ++P+ V +I+ A + L+ FT++ A +E
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQS---LNPEN-VYPYIQLACL-LYKQGKFTESEAFFNET 370
Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG- 222
+ P + + +I G ++ A++ D L ++ K +
Sbjct: 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430
Query: 223 ---------DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
D E+ ++K + +A AQ+ + E D A E F S
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
+ + + ++ + + + Y G +
Sbjct: 491 LARTMDEKLQATT---FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
Score = 55.1 bits (133), Expect = 3e-08
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
FT++ A +E + P + + +I G ++ A++ D L
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 55.1 bits (133), Expect = 4e-08
Identities = 11/75 (14%), Positives = 26/75 (34%)
Query: 442 TIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEE 501
I ++ ++ + F A L +A ++DP + Q+ + +E
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480
Query: 502 ALRNLDKTIALNPNF 516
A+ + + L
Sbjct: 481 AIELFEDSAILARTM 495
Score = 44.3 bits (105), Expect = 7e-05
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 16/76 (21%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF----------------GQYEEALRNLD 507
DF A D A++++ + G + ++ A++ L
Sbjct: 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 508 KTIALNPNFHVARAQR 523
K L+P A+
Sbjct: 453 KACELDPRSEQAKIGL 468
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 153 bits (388), Expect = 7e-41
Identities = 53/449 (11%), Positives = 106/449 (23%), Gaps = 56/449 (12%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + T +A + + L Q + P+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAHG---LTPE- 138
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+V A A L +A + P + G + L L
Sbjct: 139 QVVAIASHDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P VA A + E V++ L V A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASNGGG 251
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P+ + QA V + ++ +A + +
Sbjct: 252 KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG-KQALETVQRLLPVLCQAHGLTPQQV 310
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----Y 370
A + G + ++ + +A L + + D ++ +R
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV---AIASHDGGKQALETVQRLLPVL 367
Query: 371 NIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430
++P + + L ++ Q
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLL---------------PVLCQ--------- 403
Query: 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRG 490
+ + P + G K A + L +A + P + G
Sbjct: 404 AHGLTPEQV-------VAIASH---DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453
Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
L D +A N H+
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTNDHLV 482
Score = 150 bits (380), Expect = 1e-39
Identities = 50/430 (11%), Positives = 103/430 (23%), Gaps = 53/430 (12%)
Query: 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
+A + + L Q + P+ +V A A +
Sbjct: 72 VVAIASHDGGKQALETVQRLLPVLCQAHG---LTPQ-QVVAIASHDGG-KQALETVQRLL 126
Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
L +A + P + + L L + L P VA A
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQA 186
Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
+ E V++ L V A E ++ + P+
Sbjct: 187 L------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
QA V + ++ +A + + A + + ++ +
Sbjct: 241 QVVAIASNGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 338 NKALPLARDEAELSHIYSLRDAAIAQMKVCER----YNIKKKVSPRSQNITKNEKLAIKQ 393
+A L + + ++ +R ++P+ + +
Sbjct: 300 CQAHGLTPQQVV---AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Query: 394 LRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLE 453
L ++ Q + + P E+ +
Sbjct: 357 LETVQRLL---------------PVLCQ---------AHGLTP-------EQVVAIASN- 384
Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
G K A + L +A + P + + L L + L
Sbjct: 385 --GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 442
Query: 514 PNFHVARAQR 523
P VA A
Sbjct: 443 PQQVVAIASN 452
Score = 144 bits (364), Expect = 1e-37
Identities = 50/415 (12%), Positives = 97/415 (23%), Gaps = 48/415 (11%)
Query: 113 QSTKAIEDLTQLVEDTSVDPKIK-VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA 171
+ +A+ + ++ + V A A + L +A + P
Sbjct: 48 TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPQQV 106
Query: 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231
+ + L L + L P VA A + E V+ L
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL------ETVQALL 160
Query: 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291
V A E ++ + P+ Q
Sbjct: 161 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG-KQ 219
Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
A V + ++ +A + + A + G + ++ + +A L +
Sbjct: 220 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA- 278
Query: 352 HIYSLRDAAIAQMKVCER---YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKG 408
I S A V ++P+ + + L ++
Sbjct: 279 -IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL------- 330
Query: 409 GKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKA 468
Q L + + K A +
Sbjct: 331 --------PVLCQAHG--LTPQQVVA--------------IASHDGG---KQALETVQRL 363
Query: 469 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
L +A + P + G + L L + L P VA A
Sbjct: 364 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418
Score = 122 bits (309), Expect = 3e-30
Identities = 36/278 (12%), Positives = 72/278 (25%), Gaps = 15/278 (5%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + + A+A + + L Q + P+
Sbjct: 222 ETVQRLLPVLCQAHG-LTPQQVVAIAS--NGGGKQALETVQRLLPVLCQAHG---LTPQ- 274
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+V A + A + L +A + P + G + L L
Sbjct: 275 QVVAIASNSGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P VA A + E V++ L V A
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQAL------ETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + PE QA V + ++ +A + +
Sbjct: 388 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPQQV 446
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352
A + G + + + AL ++ ++
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVAL 484
Score = 107 bits (269), Expect = 5e-25
Identities = 39/360 (10%), Positives = 82/360 (22%), Gaps = 48/360 (13%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQ 229
++Q L A + L+ + A+R V +
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289
L V ++ E ++ + P+
Sbjct: 64 PLNLTPEQVVAIAS-------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG- 115
Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
QA V + ++ +A + + A + + ++ + +A L ++
Sbjct: 116 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175
Query: 350 LSHIYSLRDAAIAQMKVCE---RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD 406
I S A V ++P+ + + L ++
Sbjct: 176 A--IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL----- 228
Query: 407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFT 466
Q + + P + G K A
Sbjct: 229 ----------PVLCQ---------AHGLTPQQV-------VAIASN---GGGKQALETVQ 259
Query: 467 KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
+ L +A + P + + L L + L P VA A
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
Score = 92.9 bits (231), Expect = 3e-20
Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 7/196 (3%)
Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
T A ++D +RG + + + + L P VA A
Sbjct: 21 TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80
Query: 214 VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
+ E V++ L V A E ++
Sbjct: 81 GKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+ PE QA V + ++ +A + + A + G + ++
Sbjct: 135 LTPEQVVAIASHDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 193
Query: 334 VKCFNKALPLARDEAE 349
+ +A L +
Sbjct: 194 LPVLCQAHGLTPQQVV 209
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 148 bits (375), Expect = 5e-40
Identities = 67/403 (16%), Positives = 135/403 (33%), Gaps = 74/403 (18%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
V H++ L AA A + A DP+ +YY+R ++ G+ + AL +L
Sbjct: 3 VEKHLELGKK-LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSN----- 243
K IAL +F AR QR ++ K +++++ +F+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
Query: 244 ---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300
++ A D D+ A + ++ + V +A L RA G +AI
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC-FIKEGEPRKAI 174
Query: 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360
++ A + A+ + T+ Q G E ++ + L L +D ++
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---CFAHYKQV 231
Query: 361 IAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYT 420
K+ E + A + Y
Sbjct: 232 KKLNKLIESAEELIR--------DGRYTDAT-------------------------SKYE 258
Query: 421 QKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP 480
M + P T+ E+ + ++ + +A E +++P
Sbjct: 259 SVM---------KTEPSVAEYTVRSKERICHCFSKDEK------PVEAIRICSEVLQMEP 303
Query: 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ ++ R + Y + Y+EA+++ + N N R
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346
Score = 122 bits (309), Expect = 6e-31
Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 50/387 (12%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
A+ V+ DP A+ +RA V A A DL + + + +
Sbjct: 21 DALSQFHAAVD---GDPD-NYIAYYRRATV-FLAMGKSKAALPDLTKVIALKMDFTAARL 75
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
QRG + G+ +EA + K + NP+ + + ++ +
Sbjct: 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE----------SQLVKADEMQRLRS 125
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
A D D+ A + ++ + V +A L RA G
Sbjct: 126 Q---------------ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC-FIKEGE 169
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
+AI ++ A + A+ + T+ Q G E ++ + L L +D ++
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---CFA 226
Query: 356 LRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMD 415
K+ E + A + + P+
Sbjct: 227 HYKQVKKLNKLIESAEELIR--------DGRYTDATSKYES--VMKTEPSVAEYTVRS-- 274
Query: 416 KADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDE 474
+ ++ ++ N + + + +A D +
Sbjct: 275 ---KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331
Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEE 501
A++ + N + L Q ++
Sbjct: 332 AQEHNENDQQIREGLEKAQRLLKQSQK 358
Score = 120 bits (304), Expect = 3e-30
Identities = 44/308 (14%), Positives = 99/308 (32%), Gaps = 44/308 (14%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
L K+ A+ ++ N +A RATV++ +S A+ DLT+
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
++ + A ++R + L +A D + K +P+ + Q+
Sbjct: 63 VIA---LKMDF-TAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 184 F---------------GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
Y A+ LDK + + R R K
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE------GEPR 171
Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
+++ + + S+ EA + + D + + +++D ++ + H +
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 289 -----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEA 333
L G +A E + + + + + E + + + EA
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 334 VKCFNKAL 341
++ ++ L
Sbjct: 292 IRICSEVL 299
Score = 87.7 bits (218), Expect = 5e-19
Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 47/301 (15%)
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
VE + L+ A F+ ++ DP+N Y RA + A G A+ +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLT 61
Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364
K I++ A G + +++G+L+EA F K L E E + + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAE-SQLVKA 117
Query: 365 KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT 424
+R + + + T AI L + + + A+ +
Sbjct: 118 DEMQRLRSQALDAFDGADYTA----AITFL--DKILEVCV----------WDAELRELRA 161
Query: 425 SIL-NSNDYEIIPGDPTKTIEESEKY-------GNLENESGQKHAASDFTKAFADLDEAE 476
+ D + L + G D + +++ E
Sbjct: 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG------DHELSLSEVRECL 215
Query: 477 KVDPNVADSYYQRGQIYCLF------------GQYEEALRNLDKTIALNPNFHVARAQRH 524
K+D + + Q+ L G+Y +A + + P+ +
Sbjct: 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275
Query: 525 F 525
Sbjct: 276 E 276
Score = 75.0 bits (185), Expect = 7e-15
Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 41/260 (15%)
Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
+ ++ L A G + +A+ A+ D AY T+ + G+ + A+
Sbjct: 2 DVEKHLELG-KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 338 NKALPLARDEAELSHIYSLR----------DAAIAQMKVCERYNIKKKVSPRSQNITKNE 387
K + L + + + R D A + K +P Q + E
Sbjct: 61 TKVIAL---KMDFTAARLQRGHLLLKQGKLDEAEDD------FKKVLKSNPSEQEEKEAE 111
Query: 388 KLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESE 447
+K + + + DY K +E
Sbjct: 112 SQLVK--------------------ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151
Query: 448 KYGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
L + + KA +DL A K+ + +++Y+ +Y G +E +L +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 507 DKTIALNPNFHVARAQRHFV 526
+ + L+ + A V
Sbjct: 212 RECLKLDQDHKRCFAHYKQV 231
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 149 bits (377), Expect = 1e-39
Identities = 67/436 (15%), Positives = 140/436 (32%), Gaps = 89/436 (20%)
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
+ +++ D V H++ L AA A + A
Sbjct: 9 SGVDLGTENLYFQSMAD---------------VEKHLELGKKLL-AAGQLADALSQFHAA 52
Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223
DP+ +YY+R ++ G+ + AL +L K I L +F AR QR ++ K
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ----- 107
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLF---------------AQVLVDQEDFDGAEEYF 268
+++++ +F+ + ++ + E A D+ A +
Sbjct: 108 -GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166
Query: 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
++ + V +A L RA G +AI ++ A + A+ + T+ Q G
Sbjct: 167 DKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225
Query: 329 RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEK 388
E ++ + L L +D ++ K+ E
Sbjct: 226 DHELSLSEVRECLKLDQDHKR---CFAHYKQVKKLNKLIESAE----------------- 265
Query: 389 LAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEK 448
+ + D + Y M + P T+ E+
Sbjct: 266 -ELIRDGRYTDAT---------------SKYESVM---------KTEPSIAEYTVRSKER 300
Query: 449 YGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
+ ++ + +A E +++P+ ++ R + Y + Y+EA+++ +
Sbjct: 301 ICHCFSKDEK------PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354
Query: 509 TIALNPNFHVARAQRH 524
N N R
Sbjct: 355 AQEHNENDQQIREGLE 370
Score = 125 bits (317), Expect = 2e-31
Identities = 66/476 (13%), Positives = 147/476 (30%), Gaps = 105/476 (22%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
L K+ A+ ++ N +A RATV++ +S A+ DLT+
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD----------- 172
+++ + A ++R + L +A D + K +P+ +
Sbjct: 86 VIQ---LKMDF-TAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 173 ----SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
+ G Y A+ LDK + + R R K
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE------GEPR 194
Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
+++ + + ++ EA + + D + + +++D ++ + H +
Sbjct: 195 KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Query: 289 -----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEA 333
L G +A E + + + + + E + + + EA
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 334 VKCFNKALPLARDEAELSHIYSLRDAAIAQMKV------CERYNIKKKVSPRSQNITKNE 387
++ ++ L + E + + R A A + + Y ++ + Q I +
Sbjct: 315 IRVCSEVLQM---EPDNVNALKDR--AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 388 KLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESE 447
+ A + L+++ K DY + + N+ EII
Sbjct: 370 EKAQRLLKQS-----------------QKRDYYKILGVKRNAKKQEII------------ 400
Query: 448 KYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
KA+ L A + P+ + ++ + F A
Sbjct: 401 -------------------KAYRKL--ALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
Score = 91.3 bits (227), Expect = 7e-20
Identities = 45/369 (12%), Positives = 100/369 (27%), Gaps = 86/369 (23%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
++ G Y +++ +++K + L
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEKHLEL------------------------------ 32
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
+ L+ A F+ ++ DP+N Y RA +
Sbjct: 33 ---------------------GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-F 70
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
A G A+ + K I + A G + +++G+L+EA F K L E E
Sbjct: 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK 410
S + ++ + + + AI L + + +
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFG--------SGDYTAAIAFL--DKILEVCV------ 174
Query: 411 TVVMDKAD-YTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKA 468
A+ + + + D + + + D +
Sbjct: 175 ----WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230
Query: 469 FADLDEAEKVDPNVADSYYQRGQIYCLF------------GQYEEALRNLDKTIALNPNF 516
+++ E K+D + + Q+ L G+Y +A + + P+
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290
Query: 517 HVARAQRHF 525
+
Sbjct: 291 AEYTVRSKE 299
Score = 68.2 bits (167), Expect = 2e-12
Identities = 22/196 (11%), Positives = 59/196 (30%), Gaps = 33/196 (16%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
T A +++ + V + + +A E +++P+ ++
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHC-FSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF 234
R + Y + Y+EA+++ + N N R E+ ++ LK+
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG-------------LEKAQRLLKQS 379
Query: 235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE-YFNRSIRVDPENASLYVHRAMLMLQAR 293
+ + + + Y +++ P+N + +
Sbjct: 380 Q----------KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE--------EEK 421
Query: 294 GNVDEAIKLIEKAISI 309
++ I A +
Sbjct: 422 KKAEKKFIDIAAAKEV 437
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 133 bits (336), Expect = 5e-33
Identities = 54/466 (11%), Positives = 113/466 (24%), Gaps = 41/466 (8%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + T +A + + L Q + P
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQ---VVAIASHGGGKQALETVQRLLPVLCQAHG---LTPD- 326
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+V A A + L +A + P+ + G + L L
Sbjct: 327 QVVAIASHDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P+ VA A E V++ L + V A
Sbjct: 386 CQAHGLTPDQVVAIASNGGK-------QALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P QA V + + ++ +A + +
Sbjct: 439 KQALETVQRLLPVLCQTHGLTPAQVVAIASHD-GGKQALETVQQLLPVLCQAHGLTPDQV 497
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
A + + ++ + +A L D+ I S A V +
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQALETVQRLLPVLC 555
Query: 375 KV------SPRSQNITKNEKLAIKQLRE-----NNDIIIRPADKGGKTVVMDKADYTQKM 423
+ + K A++ ++ + +
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ----------VQVVAIASN 605
Query: 424 TSILNS-NDYEIIPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN 481
+ + + + + + + G K A + L +A + P+
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665
Query: 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
+ G + L L + L VA A +
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGK 711
Score = 127 bits (319), Expect = 8e-31
Identities = 50/423 (11%), Positives = 110/423 (26%), Gaps = 29/423 (6%)
Query: 112 SQSTKAIEDLTQLVEDTSVDPKIK-VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
+ +A+ + ++ V A A + L +A + P
Sbjct: 167 VTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG-KQALETVQRLLPVLCQAHGLTPAQ 225
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
+ + L L + L P+ VA A + E V++
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL------ETVQRL 279
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
L + V A E ++ + P+
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD-GGK 338
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE- 349
QA V + ++ +A + + A + G + ++ + +A L D+
Sbjct: 339 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Query: 350 ---LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE-----NNDII 401
+L +C+ + + + K A++ ++
Sbjct: 399 IASNGGKQALETVQRLLPVLCQAHGLTPD-QVVAIASHDGGKQALETVQRLLPVLCQTHG 457
Query: 402 IRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN-LENESGQKH 460
+ PA + + + + + + G K
Sbjct: 458 LTPA---------QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
A + + L +A + P+ + G + L L + L P+ VA
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 521 AQR 523
A
Sbjct: 569 ASN 571
Score = 119 bits (299), Expect = 2e-28
Identities = 55/449 (12%), Positives = 114/449 (25%), Gaps = 48/449 (10%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + + +A + + + L Q T
Sbjct: 477 ETVQQLLPVLCQAHGL---TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ--- 530
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
V A A + L +A + P+ + G + L L
Sbjct: 531 -VVAIASNGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L VA A + E V++ L V A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P+ QA V + ++ +A + + +
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG-KQALETVQRLLPVLCQAHGLTQEQV 701
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
A + + ++ + +A L D+ + + E
Sbjct: 702 VAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGKQAL---ETVQRLL 755
Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
V ++ +T + +AI A G + Q++ +L D+ +
Sbjct: 756 PVLCQAHGLTPAQVVAI-------------ASNIG---GKQALETVQRLLPVLC-QDHGL 798
Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
+ + + G K A + L +A + + +
Sbjct: 799 TL----------AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848
Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ L L + L P+ VA A
Sbjct: 849 ALETVQRLLPVLCQDHGLTPDQVVAIASN 877
Score = 118 bits (296), Expect = 5e-28
Identities = 55/449 (12%), Positives = 113/449 (25%), Gaps = 49/449 (10%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + T +A + + L Q + P
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHG---LTPD- 394
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+V A A + L +A + P+ + + L L
Sbjct: 395 QVVAIASNGGKQ--ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 452
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+T L P VA A + E V+Q L + V A
Sbjct: 453 CQTHGLTPAQVVAIASHDGGKQAL------ETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
++ + P+ QA V + ++ +A + +
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG-KQALETVQRLLPVLCQAHGLTPDQV 565
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
A + G + ++ + +A L + + + + E
Sbjct: 566 VAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV---AIASNIGGKQAL---ETVQRLL 619
Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
V ++ +T + +AI ++D + + + + Q L +
Sbjct: 620 PVLCQAHGLTPAQVVAIA----SHDGGKQALETVQRLL----PVLCQAHG--LTPDQVVA 669
Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
+ + G K A + L +A + +
Sbjct: 670 -----------------IASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQ 712
Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ L L + L P+ VA A
Sbjct: 713 ALETVQRLLPVLCQAHGLTPDQVVAIASN 741
Score = 117 bits (294), Expect = 9e-28
Identities = 50/462 (10%), Positives = 112/462 (24%), Gaps = 41/462 (8%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + +A + + L Q + P
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQ---VVAIASNIGGKQALETVQRLLPVLCQAHG---LTPD- 292
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+V A A + L +A + P+ + + L L
Sbjct: 293 QVVAIASHGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P+ VA A + E V++ L + V A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P+ QA V + ++ + + + +
Sbjct: 406 Q-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGG-KQALETVQRLLPVLCQTHGLTPAQV 463
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----Y 370
A + + +++ + +A L D+ + + +R
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV---AIASNIGGKQALATVQRLLPVL 520
Query: 371 NIKKKVSP---RSQNITKNEKLAIKQLRE-----NNDIIIRPADKGGKTVVMDKADYTQK 422
++P + K A++ ++ + P
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV---------VAIASN 571
Query: 423 MTSILNSNDYEIIPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN 481
+ + + + + + G K A + L +A + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ + L L + L P+ VA A
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673
Score = 112 bits (280), Expect = 6e-26
Identities = 59/470 (12%), Positives = 120/470 (25%), Gaps = 54/470 (11%)
Query: 68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRAT----VYIFTSQS-TKAIEDLT 122
F H + A+ + + + + + L AT V + S +A+E L
Sbjct: 82 VGHGFTHAH-IVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALL 140
Query: 123 QLVEDTS-----VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177
+ +D V + V + A A + P +
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTG--APLNLTPAQVVAIASN 198
Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237
+ L L + L P VA A + E +++ L
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL------ETMQRLLPVLCQA 252
Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
+ V A E ++ + P+ QA V
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG-KQALETVQ 311
Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
+ ++ +A + + A + + ++ + +A L D+ +
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASN 368
Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417
+ E V ++ +T ++ +AI + +TV
Sbjct: 369 GGGKQAL---ETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL---------ETVQRLLP 416
Query: 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEK 477
Q L + + + G K A + L +
Sbjct: 417 VLCQAHG--LTPDQVVA-----------------IASHDGGKQALETVQRLLPVLCQTHG 457
Query: 478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527
+ P + ++ L L + L P+ VA A
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Score = 106 bits (266), Expect = 3e-24
Identities = 53/451 (11%), Positives = 102/451 (22%), Gaps = 48/451 (10%)
Query: 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
+ + T +A + + L Q T
Sbjct: 509 ALATVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 565
Query: 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192
A A + L +A + + + L
Sbjct: 566 ----VAIASNGGG-KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLP 620
Query: 193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252
L + L P VA A + E V++ L + V A
Sbjct: 621 VLCQAHGLTPAQVVAIASHDGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNG 674
Query: 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
E ++ + E QA V + ++ +A +
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN-GGKQALETVQRLLPVLCQAHGLTPD 733
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNI 372
+ A + G + ++ + +A L + I S A E
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA--IASNIGGKQAL----ETVQR 787
Query: 373 KKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY 432
V + +T + +AI + +TV Q +
Sbjct: 788 LLPVLCQDHGLTLAQVVAIASNIGGKQAL--------ETVQRLLPVLCQ---------AH 830
Query: 433 EIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI 492
+ + + G K A + L + + P+ +
Sbjct: 831 GLTQDQVVA----------IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG 880
Query: 493 YCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ L L + L + VA A
Sbjct: 881 KQALETVQRLLPVLCQDHGLTLDQVVAIASN 911
Score = 104 bits (261), Expect = 1e-23
Identities = 55/449 (12%), Positives = 111/449 (24%), Gaps = 46/449 (10%)
Query: 80 AIRHCTEEIESTSSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTSVDPKIKVNA 138
++ ST + H +AL +I SQ A+ + + +
Sbjct: 62 QQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHE 121
Query: 139 HIKRAVVHLHAASD----FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
I A T A ++D +RG + + +
Sbjct: 122 DIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALT 181
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P VA A + + E V++ L V A
Sbjct: 182 GAPLNLTPAQVVAIASNNGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGG 235
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P+ QA V + ++ +A + +
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGG-KQALETVQRLLPVLCQAHGLTPDQV 294
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
A + G + ++ + +A L D+ + D
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV---AIASHDGG-------------- 337
Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
Q + ++ + L + + P +
Sbjct: 338 -----KQALETVQR-LLPVLCQ--AHGLTPDQVVA---------IASNGGGKQALETVQR 380
Query: 435 IPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
+ + + +G K A + L +A + P+ +
Sbjct: 381 LLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 440
Query: 495 LFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ L L +T L P VA A
Sbjct: 441 ALETVQRLLPVLCQTHGLTPAQVVAIASH 469
Score = 104 bits (260), Expect = 2e-23
Identities = 55/450 (12%), Positives = 112/450 (24%), Gaps = 51/450 (11%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + + +A + + L Q T
Sbjct: 579 ETVQRLLPVLCQAHGL---TQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ--- 632
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
V A A + L +A + P+ + G + L L
Sbjct: 633 -VVAIASHDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 690
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L VA A + + E V++ L + V A
Sbjct: 691 CQAHGLTQEQVVAIASNNGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + P QA V + ++ + + + +
Sbjct: 745 KQALETVQRLLPVLCQAHGLTPAQVVAIASNI-GGKQALETVQRLLPVLCQDHGLTLAQV 803
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA-AIAQMKVCERYNIK 373
A ++A++ + LP+ L+ + A I + E
Sbjct: 804 VAI-------ASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRL 856
Query: 374 KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE 433
V + +T ++ +AI + + Q++ +L
Sbjct: 857 LPVLCQDHGLTPDQVVAIASNIGGKQAL----------------ETVQRLLPVL------ 894
Query: 434 IIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493
+ + +G K A + L + + P+ +
Sbjct: 895 ------CQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948
Query: 494 CLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ L L + L PN VA A
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVAIASN 978
Score = 103 bits (258), Expect = 3e-23
Identities = 50/451 (11%), Positives = 101/451 (22%), Gaps = 50/451 (11%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + T +A + + L Q T
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ--- 462
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
V A A + L +A + P+ + + L L
Sbjct: 463 -VVAIASHDGG-KQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P+ VA A + E V++ L + V A
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E ++ + QA V + ++ +A + + +
Sbjct: 575 KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG-KQALETVQRLLPVLCQAHGLTPAQV 633
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374
A + + ++ + +A L D+ I S A E
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA--IASNGGGKQAL----ETV---- 683
Query: 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEI 434
+ + L + + +
Sbjct: 684 -------------QRLLPVLCQ--AHGLTQEQVVA---------IASNNGGKQALETVQR 719
Query: 435 IPGDPTKTIE-ESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493
+ + ++ + + G K A + L +A + P +
Sbjct: 720 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779
Query: 494 CLFGQYEEALRNLDKTIALNPNFHVARAQRH 524
+ L L + L VA A
Sbjct: 780 QALETVQRLLPVLCQDHGLTLAQVVAIASNI 810
Score = 54.3 bits (130), Expect = 8e-08
Identities = 32/267 (11%), Positives = 66/267 (24%), Gaps = 17/267 (6%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
E + + T + +A + + L Q T
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQ---VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQ--- 802
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
V A A + L +A + + + + L L
Sbjct: 803 -VVAIASNIG-GKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ L P+ VA A + E V++ L + V A
Sbjct: 861 CQDHGLTPDQVVAIASNIGGKQAL------ETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
E + + P+ + QA V + ++ + + + +
Sbjct: 915 Q-ALETVQRLLPVLCQDHGLTPDQVVAIASNSGG-KQALETVQRLLPVLCQDHGLTPNQV 972
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKAL 341
A + G + + + + AL
Sbjct: 973 VAIASNG-GKQALESIVAQLSRPDPAL 998
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 127 bits (322), Expect = 2e-32
Identities = 48/252 (19%), Positives = 109/252 (43%), Gaps = 12/252 (4%)
Query: 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
R + + +A + +E P A V +A + A
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNF-AVAWSNLGCV-FNAQGEIWLAI 189
Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
++A +DPN D+Y G + ++ A+ + ++L+PN V V ++
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
++ ++ +R ++ + +A A L ++ AE+ +N ++R+ P
Sbjct: 250 Q------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
+A + A + + +GN++EA++L KA+ + A+ L ++ Q+G+L+EA+ +
Sbjct: 304 HADSLNNLANI-KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 338 NKALPLARDEAE 349
+A+ ++ A+
Sbjct: 363 KEAIRISPTFAD 374
Score = 126 bits (320), Expect = 3e-32
Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 15/277 (5%)
Query: 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
E AI H + + A + A++ ++ +P
Sbjct: 79 ERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNP 132
Query: 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192
+ + L A +A A +A + PN A ++ G ++ G+ A+
Sbjct: 133 DL-YCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252
+ +K + L+PNF A V+ + ++++ + + N A
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEA------RIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
V +Q D A + + R+I + P Y + A L+ +G+V EA A+ + +
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA-LKEKGSVAEAEDCYNTALRLCPT 303
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ L I+ ++G +EEAV+ + KAL + + A
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Score = 125 bits (317), Expect = 7e-32
Identities = 38/210 (18%), Positives = 85/210 (40%), Gaps = 8/210 (3%)
Query: 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199
++ A + A DF A + + +P+ I+ + + + I
Sbjct: 3 MELAHRE-YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259
NP A + V + +++++++ +R+ + + ++ A LV
Sbjct: 62 QNPLLAEAYSNLGNVYKER------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319
D +GA + + +++ +P+ + L L+A G ++EA KAI + A+
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
LG + +G + A+ F KA+ L + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Score = 108 bits (271), Expect = 1e-25
Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 12/213 (5%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
AI + V +DP ++A+I V L A F +A A A + PN A +
Sbjct: 187 LAIHHFEKAVT---LDPNF-LDAYINLGNV-LKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
+Y G + A+ + I L P+F A + + V ++ +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK------GSVAEAEDCYN 295
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
+ ++ A + +Q + + A + +++ V PE A+ + + A + LQ +G
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGK 354
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
+ EA+ ++AI I + AY +G +
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 101 bits (255), Expect = 2e-23
Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 7/176 (3%)
Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKE 233
+ G +E A R+ + P+ + + R+++S
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC------RRLDRSAHF 55
Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
+ + + EA + V ++ A E++ ++R+ P+ Y++ A L A
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA-LVAA 114
Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
G+++ A++ A+ + LG + GRLEEA C+ KA+ + A
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
Score = 85.3 bits (212), Expect = 5e-18
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 12/192 (6%)
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
V +A+ + + + P H A V + A A
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALS---LSPNH-AVVHGNLACV-YYEQGLIDLAIDTYRRA 263
Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223
++ P+ D+Y G EA + + L P + + +
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ----- 318
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
+E++++ +R ++ A + A VL Q A ++ +IR+ P A Y
Sbjct: 319 -GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 284 HRAMLMLQARGN 295
+ L+ +
Sbjct: 378 NMGNT-LKEMQD 388
Score = 55.2 bits (134), Expect = 2e-08
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517
+++ A DF A + + +P+ I+ + + + I NP
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 518 VA 519
A
Sbjct: 68 EA 69
Score = 54.1 bits (131), Expect = 5e-08
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
AA D A A + +P++ G + G+ EEA K I PNF VA
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Score = 54.1 bits (131), Expect = 6e-08
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
++ A K +P +A++Y G +Y GQ +EA+ + + L P+F
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Score = 53.7 bits (130), Expect = 7e-08
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ +A +A +V P A ++ + G+ +EAL + + I ++P F A +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Score = 53.7 bits (130), Expect = 8e-08
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+A + A ++ P ADS I G EEA+R K + + P F A
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Score = 53.3 bits (129), Expect = 8e-08
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+A A +A + PN A ++ G ++ G+ A+ + +K + L+PNF A
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 53.3 bits (129), Expect = 1e-07
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+A A ++ P+ D Y G E A++ + NP+ +
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Score = 52.9 bits (128), Expect = 1e-07
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
A A ++ P+ D+Y G EA + + L P +
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
F +A A A + PN A + +Y G + A+ + I L P+F A
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 52.5 bits (127), Expect = 2e-07
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A ++A +DPN D+Y G + ++ A+ + ++L+PN V
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Score = 34.8 bits (81), Expect = 0.066
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 486 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ G +E A R+ + P+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV 35
Score = 30.2 bits (69), Expect = 1.9
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIY 493
+A EA ++ P AD+Y G
Sbjct: 354 KLQEALMHYKEAIRISPTFADAYSNMGNTL 383
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 118 bits (297), Expect = 3e-30
Identities = 47/250 (18%), Positives = 83/250 (33%), Gaps = 17/250 (6%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+AIE + E + I RA + ++ A + L++A + + Y
Sbjct: 23 EAIEHYNKAWE---LHKDIT--YLNNRAAA-EYEKGEYETAISTLNDAVEQGREMRADYK 76
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
+ + G L +L KTI + E+ LK+
Sbjct: 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAE 129
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
+ E L + + D+ A + + I+ PE+A Y +RA L +
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA-LAKLMS 188
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355
EAI KAI D + + AY T ++ A++ + A + S
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG---SS 245
Query: 356 LRDAAIAQMK 365
R+ K
Sbjct: 246 AREIDQLYYK 255
Score = 93.0 bits (232), Expect = 2e-21
Identities = 23/183 (12%), Positives = 62/183 (33%), Gaps = 9/183 (4%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
++AD G + Q++EA+ + +K L+ + R ++
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEK------GEY 54
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
E ++ + V+ + + ++ + ++I ++ + + A
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD 113
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347
+ L N ++ +K E ++ G + AVK + + + A ++
Sbjct: 114 I-LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 348 AEL 350
A
Sbjct: 173 ARG 175
Score = 89.5 bits (223), Expect = 3e-20
Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 50/260 (19%)
Query: 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD 131
+E +Y TAI + +E + + + + + DL + +E
Sbjct: 49 YEKGEYETAISTLNDAVEQGREM---RADYKVISKSFARIGNAYHKLGDLKKTIEY---Y 102
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
K H + L + K + V+P A+ G+ Y + A+
Sbjct: 103 QKSL-TEHRTADI--LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159
Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
+ + I P + R
Sbjct: 160 KAYTEMIKRAPEDARGYSNR---------------------------------------- 179
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
A L F A N++I DP Y+ +A A A++ ++ A + D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 238
Query: 312 SCMFAYETLGTIEVQRGRLE 331
++ +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258
Score = 82.6 bits (205), Expect = 8e-18
Identities = 41/248 (16%), Positives = 69/248 (27%), Gaps = 44/248 (17%)
Query: 276 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335
A DEAI+ KA + K + E ++G E A+
Sbjct: 2 GSMADKEKAEGNK-FYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAIS 59
Query: 336 CFNKALPLARDEAELSHIYSLRDAAIAQMKVCER----YNIKKKVSPRSQNITKNEKLAI 391
N A+ R+ Y + + A++ + +S +
Sbjct: 60 TLNDAVEQGREMRA---DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADIL 115
Query: 392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN 451
+LR + + + P E++E+
Sbjct: 116 TKLRNAEKEL---------------KKAEAEA---------YVNP-------EKAEEARL 144
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
E SD+ A E K P A Y R + EA+ + +K I
Sbjct: 145 EGKE---YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 512 LNPNFHVA 519
+PNF A
Sbjct: 202 KDPNFVRA 209
Score = 31.8 bits (73), Expect = 0.48
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 500
++ A LD A D V + R + +
Sbjct: 222 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 115 bits (290), Expect = 2e-27
Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 49/298 (16%)
Query: 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTK 116
+ + L HED L I + L +A S+
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING---LEKSSDLLLCKADTLFVRSRFID 323
Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
+ T+++E +DP ++ + LH + + K + ++ P A ++
Sbjct: 324 VLAITTKILE---IDPYN-LDVYPLHLAS-LHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236
G Y + EA R K+ ++P F
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQF-------------------------------- 406
Query: 237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296
A FA + + D A + + R+ Y+ M GN+
Sbjct: 407 --------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ-HMQLGNI 457
Query: 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
A + ++ + ++ + LG + + ++ A+ F AL L + +
Sbjct: 458 LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Score = 96.1 bits (239), Expect = 4e-21
Identities = 36/324 (11%), Positives = 87/324 (26%), Gaps = 84/324 (25%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
LL KA F ++ + T+ +E + L + + K
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILE-IDPYNLDVY--PLHLASLHESGEKNKLYLISND 364
Query: 124 LVED-------------------------------TSVDPKIKVNAHIKRAVVHLHAASD 152
LV+ +++DP+ A I A +
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHS-FAIEGE 422
Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212
+A + A ++ Y G + G A L + AL +
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL----- 477
Query: 213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272
+ + V ++ D A +F ++
Sbjct: 478 ----------------------------LNEL-------GVVAFNKSDMQTAINHFQNAL 502
Query: 273 RV-------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325
+ + A+ + + + D AI + + + + + + + + +
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHA-YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 326 QRGRLEEAVKCFNKALPLARDEAE 349
+ A+ +++L ++ +E
Sbjct: 562 HKKIPGLAITHLHESLAISPNEIM 585
Score = 94.5 bits (235), Expect = 1e-20
Identities = 48/339 (14%), Positives = 96/339 (28%), Gaps = 18/339 (5%)
Query: 21 KPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTA 80
S+ T DG + S E L A + Y A
Sbjct: 44 SNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCA 103
Query: 81 IRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140
+ ++ T + + A VY T +A LT+ + A
Sbjct: 104 AFVGEKVLDITGNPN----DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159
Query: 141 KRAVVHLHAASDF----------TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190
+ A + K L + A Y RGQ+Y ++ A
Sbjct: 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219
Query: 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTL 250
+ + ++ A V + ++ + + L + + + + + +
Sbjct: 220 KECYKEALMVDAKC--YEAFDQLVSNHLLTADEEWDLVLKLN-YSTYSKEDAAFLRSLYM 276
Query: 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
ED E + SI +++ L + +A L R + + + K + ID
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT-LFVRSRFIDVLAITTKILEID 335
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ Y + G + N + ++A
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Score = 87.6 bits (217), Expect = 2e-18
Identities = 63/376 (16%), Positives = 126/376 (33%), Gaps = 46/376 (12%)
Query: 156 AFADLDEAEKVDPNVADSYYQRGQIYCL-FGQYEEALRNLDKTIALNPNFHVA--RAQRH 212
+F A+ D + Y + + L QY+ A +K + + N + A AQ +
Sbjct: 68 SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY 127
Query: 213 FVVHKMI----VPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAE 265
+ + +S + A L + ++D A
Sbjct: 128 CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187
Query: 266 EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325
+ + + E AS+ R + N D A + ++A+ +D C A++ L + +
Sbjct: 188 KLLMQDGGIKLE-ASMCYLRGQV-YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245
Query: 326 QRGRLE-EAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNIT 384
E + V N + D A L +Y L+ + K
Sbjct: 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK--------------LNKTSHEDELRRA 291
Query: 385 KNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DYTQKMTSILNSNDYEIIPGDPTKTI 443
++ +I L +++D+++ AD T K+ I + + ++ P
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-DPYNLDVYP------- 343
Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
+ +ESG+ K + ++ P A ++ G Y + EA
Sbjct: 344 ----LHLASLHESGE------KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 504 RNLDKTIALNPNFHVA 519
R K+ ++P F A
Sbjct: 394 RYFSKSSTMDPQFGPA 409
Score = 66.8 bits (163), Expect = 9e-12
Identities = 19/199 (9%), Positives = 52/199 (26%), Gaps = 18/199 (9%)
Query: 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
A + A + + +AI T + ++ + + A
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGT-HLPYLFLGMQ-HMQLGNILLAN 461
Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL-------NPNFHVARAQ 210
L + + + G + + A+ + + L + A
Sbjct: 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521
Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270
K+ + + ++ + +N T A V + ++ A + +
Sbjct: 522 LGHAYRKL------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575
Query: 271 SIRVDPENASLYVHRAMLM 289
S+ + P +
Sbjct: 576 SLAISPNEIMASDLLKRAL 594
Score = 52.9 bits (127), Expect = 2e-07
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A L++ + N A+ + +Y A+ +L +++A++PN +A
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 51.8 bits (124), Expect = 4e-07
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
A + F A + + + + A ++ G Y Y+ A+ L++ + L+ N
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Score = 49.5 bits (118), Expect = 2e-06
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +A + A ++ Y G + G A L + AL +
Sbjct: 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Score = 39.4 bits (92), Expect = 0.003
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ A L + + + G + + A+ + + L
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Score = 36.4 bits (84), Expect = 0.026
Identities = 28/247 (11%), Positives = 61/247 (24%), Gaps = 28/247 (11%)
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
L+ H A+ + A + EK + I + A+ L + G A K
Sbjct: 89 LWRHDAL----MQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKE 143
Query: 341 LPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDI 400
+ AA +K + + + + E N
Sbjct: 144 ------DLYNRSSACRYLAAFCLVK-LYDWQ---------GALNLLGETNPFRKDEKNAN 187
Query: 401 IIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKH 460
+ D G K ++ + + N ++++ + + K ++ H
Sbjct: 188 KLLMQDGGIK---LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244
Query: 461 AASDFTKAFA----DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
+ + + K D S Y + +I
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304
Query: 517 HVARAQR 523
+
Sbjct: 305 SDLLLCK 311
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 109 bits (275), Expect = 2e-27
Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 29/235 (12%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+ + + + + D+ KA +A + + A Y
Sbjct: 10 HSSGLVPRGSH---MASMTGGQQMGR-----GSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
+ + E AL DK + L+ + A V E +++ F
Sbjct: 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK------EMYKEAKDMFE 115
Query: 236 -------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
D + VLV E A Y R++ ++ + +
Sbjct: 116 KALRAGMENGDLFYML-------GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG-M 167
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
L G +DEA+ D A+ G + E+A++ +KA+ +
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222
Score = 102 bits (257), Expect = 7e-25
Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
+ + + + RG + G YE+A K I N +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIPY 60
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDF 261
++ + +E++L + + + V V +E +
Sbjct: 61 INFANLLSSV------NELERALAFYDKALELDSSAATAYYG-------AGNVYVVKEMY 107
Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
A++ F +++R EN L+ + L A+ +++A+ ++++ A G
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTV-LVKLEQPKLALPYLQRAVELNENDTEARFQFG 166
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAE 349
G L+EA+ F A+
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHAD 194
Score = 86.8 bits (216), Expect = 2e-19
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 46/214 (21%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A+ + +E +D A+ V + +A ++A + D +Y
Sbjct: 75 RALAFYDKALE---LDSSA-ATAYYGAGNV-YVVKEMYKEAKDMFEKALRAGMENGDLFY 129
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
G + Q + AL L + + LN N A
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEA---------------------------- 161
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
F L ++ D A F DP +A + + + + N
Sbjct: 162 -----RFQ-------FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT-YAYKEN 208
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329
++A+++++KAI I M A +
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 54.4 bits (132), Expect = 2e-08
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+A + + DP AD++Y G Y E+AL LDK I + P+ +A
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 54.4 bits (132), Expect = 2e-08
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 441 KTIEESEKYGNLENESG-----QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 495
+ + ++ + +G + D+ KA +A + + A Y +
Sbjct: 10 HSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSS 69
Query: 496 FGQYEEALRNLDKTIALNPNFHVA 519
+ E AL DK + L+ + A
Sbjct: 70 VNELERALAFYDKALELDSSAATA 93
Score = 54.1 bits (131), Expect = 2e-08
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +A ++A + D +Y G + Q + AL L + + LN N A
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Score = 52.9 bits (128), Expect = 5e-08
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
A L A +++ N ++ +Q G G +EAL +P A
Sbjct: 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 51.7 bits (125), Expect = 1e-07
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +A A D+A ++D + A +YY G +Y + Y+EA +K +
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 41.3 bits (98), Expect = 4e-04
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 467 KAFADLDEAEKVDPNVADSYYQRGQIYCL----FGQYEEALRNLDKTIALNPNFHVA 519
+ + + P + G FG YE+A K I N +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
Score = 36.3 bits (85), Expect = 0.014
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ + + L+ + + + G E+A + F KA+ +++A
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASM---TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI 58
Score = 33.3 bits (77), Expect = 0.13
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A+ + E DP +A V + KA LD+A + P+ + +
Sbjct: 177 EALSQFAAVTE---QDPG-HADAFYNAGVT-YAYKENREKALEMLDKAIDIQPDHMLALH 231
Query: 176 QRGQIYCLFGQY 187
+ + +
Sbjct: 232 AKKLLGHHHHHH 243
Score = 30.9 bits (71), Expect = 0.86
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 499
+ KA LD+A + P+ + + + + +
Sbjct: 208 NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 113 bits (284), Expect = 5e-27
Identities = 52/425 (12%), Positives = 129/425 (30%), Gaps = 46/425 (10%)
Query: 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIY 181
+ + K A + H A L +AE++ + ++ +Y
Sbjct: 46 NREFKATMCNLLAYLK-HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104
Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPGDRERVEQSLKEFRNF 237
G+ + +DK + F + + + E++ F
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164
Query: 238 VDTHSNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPENASLYVHRAML---MLQ 291
++ E + A +++ A + ++IR++P+N L V A+ M +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
E KL+E+A+ + ++ ++A++ KAL + A L
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 352 H----IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD- 406
Y + + ++ Y +K + + +K A + + A
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK-ADEANDNLFRVCSILASL 343
Query: 407 --KGGKTVVMDKADYTQKMTSILNSNDYEIIP-------------GDPTKTIEESEKYGN 451
+ ++A+Y + K I +
Sbjct: 344 HALADQY---EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
+ +S +K D + A + +++ + + L + ++A + ++ +
Sbjct: 401 INQKSREKEKMKDKLQKIAK--MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 512 LNPNF 516
Sbjct: 459 SGSLI 463
Score = 104 bits (261), Expect = 4e-24
Identities = 54/368 (14%), Positives = 115/368 (31%), Gaps = 50/368 (13%)
Query: 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLL---RATVYIFTSQSTKAIEDLTQLVEDTS 129
++E L +R E I+ ++ + + + A VY + + + ++
Sbjct: 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH--- 122
Query: 130 VDPKIKVNAHIKRAVVHLHAA--------SDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181
V K I+ + + +A ++A + P +
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182
Query: 182 CL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238
+ + A+ L + I LNP+ + +HKM + E + K +
Sbjct: 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM--REEGEEEGEGEKLVEEAL 240
Query: 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML---------- 288
+ V + A+ +++ D A E +++ P NA L+
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 289 --------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
+ + A+ ++KA + + L ++ + EEA F K
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360
Query: 341 LPLARDEAELSHIYS-----------LRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKL 389
++ D AI E I +K + + K +K+
Sbjct: 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI--EGVKINQKSREKEKMKDKLQKI 418
Query: 390 AIKQLREN 397
A +L +N
Sbjct: 419 AKMRLSKN 426
Score = 94.6 bits (235), Expect = 7e-21
Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 41/271 (15%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
AI+ L Q + + +KV +K + + + ++EA + P V D
Sbjct: 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMR-EEGEEEGEGEKLVEEALEKAPGVTDVLR 251
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV---------PGDRER 226
+ Y + ++A+ L K + PN Q + + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Query: 227 VEQSLKE----FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA--- 279
+ + + + + + N+ C++ A + + ++ AE YF + +
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371
Query: 280 SLYVHRAMLMLQARGNVDEAI------------------------KLIEKAISIDKSCMF 315
L++ L D+AI K+ + +S + +
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A L ++ ++++A + + L
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462
Score = 93.8 bits (233), Expect = 1e-20
Identities = 62/400 (15%), Positives = 118/400 (29%), Gaps = 76/400 (19%)
Query: 148 HAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
H + + LD+ E A + L GQ E AL L K
Sbjct: 19 HFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAE 78
Query: 199 ALNPNFHVARAQRHFVVHKMIVP-------------GDRERVEQSLKEFRNFVDTHSNVV 245
L H +A+ +V ++V+ ++F + S +
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM--LQARGNVDEAIKLI 303
+ + ++ + A+ F +++ P+N A+ L AI +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 304 EKAISIDKSCMFAYETLGT----IEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDA 359
+AI ++ + L + + E K +AL A LR A
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-----VTDVLRSA 253
Query: 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADY 419
A Y K + AI+ L++ + P + A
Sbjct: 254 AKF-------YRRKDEP-----------DKAIELLKKA--LEYIP----------NNAYL 283
Query: 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479
++ + +++ + E+ YG + HA + KA ++ +
Sbjct: 284 HCQIGCCYRAKVFQV------MNLRENGMYGKRKLLELIGHAVAHLKKA-------DEAN 330
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
N+ ++ L QYEEA K +
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Score = 60.7 bits (147), Expect = 6e-10
Identities = 39/275 (14%), Positives = 78/275 (28%), Gaps = 38/275 (13%)
Query: 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL 124
L K E E+ + E +E A Y + KAIE L +
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKA 273
Query: 125 VEDTSVDPKIKVNAHIKRAVVHLHAASD------------------FTKAFADLDEAEKV 166
+E P H + + A A L +A++
Sbjct: 274 LE---YIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
+ N+ ++ L QYEEA K + A+ H + +
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV-AKQLLHLRYGNFQL-YQMKC 387
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
++++ F E + + ++ D ++ + + ++ A
Sbjct: 388 EDKAIHHFI----------EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
L + + +A + E+ + A G
Sbjct: 438 FL-QELNEKMQQADEDSERGLESGSLIPSASSWNG 471
Score = 38.4 bits (89), Expect = 0.006
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 460 HAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
H + + LD+ E A + L GQ E AL L K
Sbjct: 19 HFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAE 78
Query: 511 ALNPNFHVARAQRHFVWT 528
L H +A+ + T
Sbjct: 79 ELIQQEHADQAEIRSLVT 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 106 bits (266), Expect = 1e-26
Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 10/198 (5%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG-------- 222
D Q+ GQ +A+ +TIALN + + + I
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 223 --DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
+++ ++ + N V+ A++ V + A + + ++++ +N +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
+ + ++ K +S +A G ++ R E+A K
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 341 LPLARDEAELSHIYSLRD 358
+ + +
Sbjct: 184 ILRFPSTEAQKTLDKILR 201
Score = 80.9 bits (200), Expect = 1e-17
Identities = 32/249 (12%), Positives = 64/249 (25%), Gaps = 54/249 (21%)
Query: 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVE------------DTSVDPKIKVNAHIKRA 143
L + + I Q+ +A+ Q + + + +I + A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 144 VVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ ++ KA+ E + PN D ++ GQ ++ALR +K + L +
Sbjct: 62 LA-YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG 263
A + E
Sbjct: 121 NLAANIFLGNYYYLT---------------------------------------AEQEKK 141
Query: 264 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
E + + + L ++A ++K I S A +TL I
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199
Query: 324 EVQRGRLEE 332
+
Sbjct: 200 LRIEKEVNR 208
Score = 54.8 bits (132), Expect = 9e-09
Identities = 26/214 (12%), Positives = 60/214 (28%), Gaps = 32/214 (14%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
+ ++ G+ +AV F + + L D E +Y + +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---MYYWTNVDKNSEISSKLATELAL 62
Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE-- 433
+++N K A +E + P + + +
Sbjct: 63 AYKKNRNYDK----AYLFYKEL--LQKAPNNVDC---------LEACAEMQVCRGQEKDA 107
Query: 434 ------IIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
I+ + + + GN + ++ K + + + Y
Sbjct: 108 LRMYEKILQLEA-DNLAANIFLGNYYYLTAEQ-----EKKKLETDYKKLSSPTKMQYARY 161
Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
+ G +YE+A +L K I P+ +
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 441 KTIEESEKYGNLENESGQ-KHAASDFTKAFA-DLDEAE--------KVDPNVADSYYQRG 490
++++E + + E+GQ A S F + A ++D E K + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 491 QIYCLFGQYEEALRNLDKTIALNPNFHVA 519
Y Y++A + + PN
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDC 90
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 108 bits (273), Expect = 2e-26
Identities = 43/323 (13%), Positives = 99/323 (30%), Gaps = 30/323 (9%)
Query: 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQ 123
++S A+R + + D+ + + +E H L + + +++ + +
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVME-KDPFHASCL--PVHIGTLVELNKANELFYLSHK 81
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
LV+ + P + +L A L +A ++ ++ G + +
Sbjct: 82 LVD---LYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137
Query: 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243
++++A+ L H+ + + + F +
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT------NNSKLAERFFSQALSIAPE 191
Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---------NASLYVHRAMLMLQARG 294
V ++ AE++F ++ L + + +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG-HVCRKLK 250
Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
EA+ +A+ + Y +G I G E AV F+ AL L RD+
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF---SV 307
Query: 355 SLRDAAIAQMK----VCERYNIK 373
++ I +IK
Sbjct: 308 TMLGHCIEMYIGDSEAYIGADIK 330
Score = 83.9 bits (208), Expect = 7e-18
Identities = 44/304 (14%), Positives = 88/304 (28%), Gaps = 53/304 (17%)
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
+ +S+ + +D ++ A+ DF + + + DP +AS
Sbjct: 11 IPESVDGLQENLDVVVSL-------AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL-EEAVKCFNKALPLAR 345
L +E L K + + S ++ +G + G E A + +KA L +
Sbjct: 64 GT-LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 346 DEAE----LSHIYSLR---DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENN 398
H +++ D A+A Y ++ + ++ NN
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAA------YFTAAQLMKGCHLPMLY--IGLEYGLTNN 174
Query: 399 DIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ 458
A+ + D ++ + G + ++G+
Sbjct: 175 ---------------SKLAERFFSQALSIAPEDPFVM-----------HEVGVVAFQNGE 208
Query: 459 -KHAASDFTKA--FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
K A F A E G + +Y EAL + + L P
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 516 FHVA 519
Sbjct: 269 NAST 272
Score = 72.3 bits (178), Expect = 5e-14
Identities = 17/190 (8%), Positives = 47/190 (24%), Gaps = 40/190 (21%)
Query: 160 LDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219
+ E+ D + + ++ + + +P
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH--------------- 55
Query: 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
+ LV+ + ++ + + P N
Sbjct: 56 -------------------------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
+ L + A + + KA +++K+ A+ G ++A+ +
Sbjct: 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150
Query: 340 ALPLARDEAE 349
A L +
Sbjct: 151 AAQLMKGCHL 160
Score = 51.9 bits (125), Expect = 2e-07
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +A +A + P A +Y G I+ L G +E A+ + L + +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Score = 40.7 bits (96), Expect = 7e-04
Identities = 6/65 (9%), Positives = 18/65 (27%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ A +A + P ++ G + G+++ A + +
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 524 HFVWT 528
+
Sbjct: 234 KWEPL 238
Score = 34.6 bits (80), Expect = 0.063
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
+F A A + + S G ++ EA D
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 105 bits (265), Expect = 3e-26
Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 22/216 (10%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
++ V L+A + A + A K +P ++ Y + G AL N
Sbjct: 7 NPLRLGVQ-LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65
Query: 198 IALNPNFHVAR-----AQRHFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVV 245
+A P + A + +EQ+L + + H
Sbjct: 66 VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ-- 123
Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
V + D AE +++ ++ + A L + G +DEA+ K
Sbjct: 124 -----RGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL-YLSMGRLDEALAQYAK 176
Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
A+ + + + +G+ EEA +
Sbjct: 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212
Score = 96.5 bits (241), Expect = 5e-23
Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 19/193 (9%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
+ + G G+Y+ AL ++ + NP A K+ V
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL------GLV 55
Query: 228 EQSLKEFR-------NFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
+L+ + ++ + + V + + A + RV+P
Sbjct: 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
A L++ R L+ G D+A +++A++++ + L + + GRL+EA+
Sbjct: 116 RYAPLHLQRG-LVYALLGERDKAEASLKQALALEDTPE-IRSALAELYLSMGRLDEALAQ 173
Query: 337 FNKALPLARDEAE 349
+ KAL A + +
Sbjct: 174 YAKALEQAPKDLD 186
Score = 82.6 bits (205), Expect = 3e-18
Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 30/209 (14%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
A+ + ++ +P+ A A A + P Y
Sbjct: 23 AALTLFERALK---ENPQD-PEALYWLART-QLKLGLVNPALENGKTLVARTPRYLGGYM 77
Query: 176 QRGQIYC-----------LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
+ Y G E+AL L +NP + QR V + G+R
Sbjct: 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---GER 134
Query: 225 ERVEQSLK---EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
++ E SLK + + S A++ + D A + +++ P++ L
Sbjct: 135 DKAEASLKQALALEDTPEIRSA-------LAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISID 310
V A L +G +EA +
Sbjct: 188 RVRYASA-LLLKGKAEEAARAAALEHHHH 215
Score = 49.1 bits (118), Expect = 8e-07
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A + A K +P ++ Y + G AL N +A P +
Sbjct: 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Score = 47.5 bits (114), Expect = 3e-06
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 449 YGNLENESGQKHAAS-DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
Y L ++ + +A + L +AE+V+P A + QRG +Y L G+ ++A +L
Sbjct: 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142
Query: 508 KTIALNPN 515
+ +AL
Sbjct: 143 QALALEDT 150
Score = 45.2 bits (108), Expect = 2e-05
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
+ KA A L +A ++ + ++Y G+ +EAL K + P R
Sbjct: 133 ERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188
Score = 43.3 bits (103), Expect = 6e-05
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 11/67 (16%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYC-----------LFGQYEEALRNLDKTIAL 512
A + P Y + Y G E+AL L +
Sbjct: 54 LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
Query: 513 NPNFHVA 519
NP +
Sbjct: 114 NPRYAPL 120
Score = 41.0 bits (97), Expect = 4e-04
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ + G G+Y+ AL ++ + NP A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41
Score = 40.2 bits (95), Expect = 8e-04
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
A + + +A A +A + P D + L G+ EEA R
Sbjct: 153 IRSALAEL-YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
Query: 198 IALNPN 203
+ +
Sbjct: 212 HHHHHH 217
Score = 38.7 bits (91), Expect = 0.002
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+A A +A + P D + L G+ EEA R + +
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 108 bits (272), Expect = 4e-26
Identities = 47/245 (19%), Positives = 78/245 (31%), Gaps = 24/245 (9%)
Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
I + + DP A + + A L ++ PN +
Sbjct: 84 TILFMEAAIL---QDPGD-AEAWQFLGIT-QAENENEQAAIVALQRCLELQPNNLKALMA 138
Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236
Y ++A L I NP + V +K PG R+ +S +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYL------VKNKKGSPGLTRRMSKSPVDSSV 192
Query: 237 FVDTHSNVVEACTLFAQ------------VLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
+EA + +F+ A + FN ++ V PE+ SL+
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
L +EA++ +A+ I + + LG + G EAV F AL L
Sbjct: 253 LGAT-LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311
Query: 345 RDEAE 349
R
Sbjct: 312 RKSRN 316
Score = 92.8 bits (231), Expect = 1e-20
Identities = 33/245 (13%), Positives = 77/245 (31%), Gaps = 24/245 (9%)
Query: 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
Q+ + + + +P + + D ++ A DP A+
Sbjct: 42 QNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFMEAAILQDPGDAE 100
Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQ 229
++ G + A+ L + + L PN A V + + +
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKA----LMALAVSYT-----NTSHQQD 151
Query: 230 SLKEFR-------NFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
+ + + + N ++ VD +G +E + + + +
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211
Query: 280 SLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
+ + ++ G + AI A+++ + LG R EEAV+ +
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271
Query: 339 KALPL 343
+AL +
Sbjct: 272 RALEI 276
Score = 84.7 bits (210), Expect = 5e-18
Identities = 46/346 (13%), Positives = 98/346 (28%), Gaps = 74/346 (21%)
Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
++E A ++ E+ +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQ--------------------------AEWEEMARRNWIS 36
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
Q +Q +E+ + ++ + G++ I +E
Sbjct: 37 ------ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFME 89
Query: 305 KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYS---LR 357
AI D A++ LG + + + A+ + L L + + L+ Y+ +
Sbjct: 90 AAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149
Query: 358 DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417
A K +P+ + + KN+K + R M K+
Sbjct: 150 QDACEA------LKNWIKQNPKYKYLVKNKKGSPGLTRR-----------------MSKS 186
Query: 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKY---GNLENESGQKHAASDFTKAFADLDE 474
+ + E + + + G L + SG +F +A +
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMI--DPDLQTGLGVLFHLSG------EFNRAIDAFNA 238
Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
A V P + + G + EEA+ + + + P F +R
Sbjct: 239 ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284
Score = 57.4 bits (139), Expect = 5e-09
Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 54/224 (24%)
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPK-IKVNAHIKRAVVH------LHAASDFTKA 156
+ T + +K+ D + L + + N + + H + +F +A
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
+ A V P + + G + EEA+ + + + P F +
Sbjct: 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS--------- 283
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
N+ ++ + A F ++ +
Sbjct: 284 ------------------------RYNL-------GISCINLGAYREAVSNFLTALSLQR 312
Query: 277 ENASLYVHRAMLM-------LQARGNVDEAIKLIEKAISIDKSC 313
++ + + L+ ++ + +L + A D
Sbjct: 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 106 bits (267), Expect = 1e-25
Identities = 29/250 (11%), Positives = 65/250 (26%), Gaps = 29/250 (11%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A + + P+ A + A L+ A +DP +
Sbjct: 39 EAALAFEAVCQ---AAPER-EEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDIAVHA 93
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---------RAQRHFVVHKMIVPGDRER 226
+ AL +L + P + V +
Sbjct: 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
+ N H++ + ++D A R++ + P++A
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHAS-------LGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
L+ L EA+ +A+ I+ + + + + A K +
Sbjct: 207 QLWNKLGAT-LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
Query: 340 ALPLARDEAE 349
A+ +
Sbjct: 266 AIYMQVGGTT 275
Score = 101 bits (255), Expect = 6e-24
Identities = 31/230 (13%), Positives = 73/230 (31%), Gaps = 29/230 (12%)
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
P + ++ + + ++ +A + + P +++ G + A+
Sbjct: 17 PYMYHENPMEEGLS-MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75
Query: 192 RNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQSLKEFR-------NFVDTH 241
L+ L+P H V H + +L R +
Sbjct: 76 IALNHARMLDPKDIAV----HAALAVSHT-----NEHNANAALASLRAWLLSQPQYEQLG 126
Query: 242 SNVVEACTLFAQ--------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
S ++A ++ + ++ ++P +A L+ +L
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL-YNLS 185
Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
N D A + +A+ + + LG R +EA+ +N+AL +
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Score = 91.6 bits (228), Expect = 2e-20
Identities = 35/299 (11%), Positives = 77/299 (25%), Gaps = 61/299 (20%)
Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
+ Q+ ++ + E ++ + A F + PE +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
+ AI + A +D + + L A+ L
Sbjct: 62 GLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA 405
+L + ++E E +
Sbjct: 121 QYEQLG------------------SVNLQADVDIDDLNVQSEDFFFAAPNEYRECR---- 158
Query: 406 DKGGKTVVMDKADYTQKMTSI-LNSNDYEIIPGDPTKTIEESEKY---GNLENESGQKHA 461
++ +N ND ++ + G L N S
Sbjct: 159 -----------TLLHA---ALEMNPNDAQL--------------HASLGVLYNLSN---- 186
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
++ A A+L A ++ P+ A + + G + +EAL ++ + +NP +
Sbjct: 187 --NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243
Score = 89.7 bits (223), Expect = 7e-20
Identities = 24/220 (10%), Positives = 55/220 (25%), Gaps = 34/220 (15%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+ D ++ + G EA + P A
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 212 HFVVHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGA 264
+ E+ ++ + H+ + A ++ + + A
Sbjct: 62 GLTQAEN------EKDGLAIIALNHARMLDPKDIAVHAAL-------AVSHTNEHNANAA 108
Query: 265 EEYFNRSIRVDPENASLYVHRAM--------------LMLQARGNVDEAIKLIEKAISID 310
+ P+ L A E L+ A+ ++
Sbjct: 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
+ + +LG + + A +A+ L D+A+L
Sbjct: 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Score = 83.9 bits (208), Expect = 6e-18
Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 56/247 (22%)
Query: 116 KAIE---DLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
+ QL + +++ A +++ + L A +++PN A
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173
Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232
+ G +Y L Y+ A NL + + L P+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL------------------------- 208
Query: 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 292
+ + L + A + +NR++ ++P + + A+
Sbjct: 209 --------WNKL-------GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS-YSN 252
Query: 293 RGNVDEAIKLIEKAISIDKSCMFAY------------ETLGTIEVQRGRLEEAVKCFNKA 340
D A K + +AI + + + R + + +
Sbjct: 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312
Query: 341 LPLARDE 347
+ E
Sbjct: 313 VEPFAKE 319
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 105 bits (263), Expect = 2e-25
Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 10/258 (3%)
Query: 94 NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153
++T + A T Q + + Q++ ++ + +R V+ +
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLR 59
Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
A D +A + P++ + + G G ++ A D + L+P ++ A R
Sbjct: 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119
Query: 214 VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273
++ R + + + F N D A+E +
Sbjct: 120 ALYYG------GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFE 172
Query: 274 VDPENASLYVHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
+ + + + + ++ S+ + LG + G L+
Sbjct: 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232
Query: 332 EAVKCFNKALPLARDEAE 349
A F A+
Sbjct: 233 SATALFKLAVANNVHNFV 250
Score = 103 bits (258), Expect = 9e-25
Identities = 32/264 (12%), Positives = 84/264 (31%), Gaps = 11/264 (4%)
Query: 77 YLTAIRHCTEEIESTS-SNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
+ + + S + ++ +A R +Y A D +Q + + P +
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA---IRPDM- 76
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
+ L A +F A+ D ++DP ++ RG G+ + A +L
Sbjct: 77 PEVFNYLGIY-LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
+PN + K+ +++ E + F + +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKL---DEKQAKEVLKQHFEKSDKEQWGWNIVE-FYLGNI 191
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
+Q + + + + + + + G++D A L + A++ +
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANNVHNFV 250
Query: 316 AYETLGTIEVQRGRLEEAVKCFNK 339
+ G+ ++ + ++
Sbjct: 251 EHRYALLELSLLGQDQDDLAESDQ 274
Score = 89.3 bits (222), Expect = 5e-20
Identities = 46/277 (16%), Positives = 80/277 (28%), Gaps = 42/277 (15%)
Query: 250 LFAQVLVDQEDFDGAEEYFNRSIR----VDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
+ A L + + + D E A L R +L + G A +
Sbjct: 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLRALARNDFSQ 68
Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
A++I + LG Q G + A + F+ L L + R IA
Sbjct: 69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AHLNR--GIALYY 123
Query: 366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD---KGGKTVVMDKADYTQK 422
R KLA L P D + K D Q
Sbjct: 124 G-GRD-----------------KLAQDDLLAF--YQDDPNDPFRSLWLYLAEQKLDEKQA 163
Query: 423 MTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNV 482
+ +E +E + +E G + + AD + + ++
Sbjct: 164 KEVLKQH--FEKSD-------KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+++ + G+ Y G + A +A N + V
Sbjct: 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Score = 79.7 bits (197), Expect = 9e-17
Identities = 36/260 (13%), Positives = 73/260 (28%), Gaps = 42/260 (16%)
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
+ A F++++ + P+ ++ + + L GN D A + + + +D +
Sbjct: 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTY 110
Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE----LSHIYSLRDAAIAQMKVCER 369
+A+ G GR + A ++ L D A+ + +
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170
Query: 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI-LN 428
+ K NI + I + + AD T + L
Sbjct: 171 FEKSDKEQW-GWNIVEFYLGNISEQTLMERLK---------------ADATD---NTSLA 211
Query: 429 SNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQ 488
+ E L + D A A A + + +
Sbjct: 212 EHLSET--------------NFYLGK---YYLSLGDLDSATALFKLAVANNVHNFVEHRY 254
Query: 489 RGQIYCLFGQYEEALRNLDK 508
L GQ ++ L D+
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 103 bits (259), Expect = 5e-25
Identities = 23/222 (10%), Positives = 67/222 (30%), Gaps = 14/222 (6%)
Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD- 195
+ + A L +++ +A ++ E N Y +R Y +Y+ A ++++
Sbjct: 4 DVEFRYADF-LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 196 --KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253
+ ++ K + ++++++ VD + ++
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
++ +F A +Y + IR + ++ +A K + + +
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKEYVKADSSFVKVLELKPNI 175
Query: 314 MFAYETLGTIEV---QRGRLEEAVKCFNKALPLARDEAELSH 352
Y + A + K + +
Sbjct: 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217
Score = 103 bits (258), Expect = 7e-25
Identities = 37/289 (12%), Positives = 69/289 (23%), Gaps = 55/289 (19%)
Query: 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
A F++ +Y AI + ++ RA Y ++ A +D+
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
+ + L + A A D D Y Q G +
Sbjct: 62 TYFSKVNATKAK-SADFEYYGKI-LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
G + A++ ++K I
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTD---------------------------------PKVFY 146
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--MLQARGNVDEAI 300
Q +++ A+ F + + + P Y+ RA A
Sbjct: 147 E-------LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199
Query: 301 KLIEKAISID--------KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
EK I + + A E + +A + L
Sbjct: 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248
Score = 100 bits (251), Expect = 6e-24
Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 10/182 (5%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
D ++ Y EA+ +K A N + + + + + + +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI----YN--RRAVCYYELAKYDLA 56
Query: 231 LKEFRNF---VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
K+ + V+ + ++L+ + A + + ++ D +Y
Sbjct: 57 QKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347
+GN AI+ +EK I + + LG +A F K L L +
Sbjct: 117 Y-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175
Query: 348 AE 349
Sbjct: 176 YI 177
Score = 89.3 bits (222), Expect = 5e-20
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 16/224 (7%)
Query: 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD 131
+E Y A + ++ K+ + + Q + AI+ V+ D
Sbjct: 48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD---RD 104
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
+++ + + + +F A +++ + +Y+ GQ Y +Y +A
Sbjct: 105 TT-RLDMYGQIGSY-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162
Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF--------RNFVDTHSN 243
+ K + L PN ++ R + + +
Sbjct: 163 SSFVKVLELKPNIYIGYLWRARANAAQ---DPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219
Query: 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
++EA A D A+ + + +DP N M
Sbjct: 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263
Score = 58.1 bits (141), Expect = 1e-09
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 46/212 (21%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI--YSLR-----DAAIAQMKVCE 368
+ EA++ FNK + + + D A K E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ---KDIE 61
Query: 369 RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSI-L 427
Y K + + + + +++ I Y ++
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAI---------------QQYQA---AVDR 103
Query: 428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
++ ++ YG + + K +F A +++ + +Y
Sbjct: 104 DTTRLDM--------------YGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFY 146
Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ GQ Y +Y +A + K + L PN ++
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Score = 53.4 bits (129), Expect = 5e-08
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 449 YGNLENESGQKHAASDFTKAFA-DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
+ ++ Q A + K K + ++ Y + +A
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
Query: 508 KTIALNPNFHVA 519
+AL+P A
Sbjct: 246 NILALDPTNKKA 257
Score = 43.8 bits (104), Expect = 7e-05
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D ++ Y EA+ +K A N
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39
Score = 41.9 bits (99), Expect = 3e-04
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPN 515
++ KA + + ++ PN+ Y R + + A +K I +
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211
Score = 33.8 bits (78), Expect = 0.097
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTK---AIEDLTQLVE-- 126
+ +++Y+ A + +E + L RA TK A +L+E
Sbjct: 153 YYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209
Query: 127 --DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 184
+ + A+ A D KA A +DP +
Sbjct: 210 APGGAKYKDELIEANEYIAYY-YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268
Query: 185 GQY 187
+
Sbjct: 269 HHH 271
Score = 28.4 bits (64), Expect = 6.1
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 499
D KA A +DP + +
Sbjct: 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 101 bits (255), Expect = 1e-24
Identities = 31/252 (12%), Positives = 76/252 (30%), Gaps = 37/252 (14%)
Query: 108 YIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD 167
++ K + + + A+I+ + + +A L +A ++D
Sbjct: 20 HMGDQNPLKTDKGRDEARD-----------AYIQLGLG-YLQRGNTEQAKVPLRKALEID 67
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRER 226
P+ AD++ ++ + + A K +A + + +++R
Sbjct: 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL-------NNYGGFLYEQKR 120
Query: 227 VEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
E++ + N+ V + + A+EYF +S+R++
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENL-------GLVSLQMKKPAQAKEYFEKSLRLNRN 173
Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
S+ + A L L A + + + + + A
Sbjct: 174 QPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232
Query: 338 NKALPLARDEAE 349
+ L E
Sbjct: 233 LQLKRLYPGSLE 244
Score = 77.7 bits (192), Expect = 3e-16
Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 12/186 (6%)
Query: 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225
+ + ++ G + +N KT A Q R
Sbjct: 1 MGSSHHHHHHSSG---LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYL------QRG 51
Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
EQ+ R ++ + +A A V + + A+E + +++ D NA + +
Sbjct: 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
Query: 286 AMLMLQARGNVDEAIKLIEKAI--SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
L + +EA + + +A ++ +E LG + +Q + +A + F K+L L
Sbjct: 112 GGF-LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 344 ARDEAE 349
R++
Sbjct: 171 NRNQPS 176
Score = 47.6 bits (114), Expect = 4e-06
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 474 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +K D+Y Q G Y G E+A L K + ++P+ A
Sbjct: 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA 73
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 438 DPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
+P KT + ++ + + G + +A L +A ++DP+ AD++ ++
Sbjct: 25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE 84
Query: 497 GQYEEALRNLDKTIALNPNFHVAR 520
+ + A K +A +
Sbjct: 85 MEPKLADEEYRKALASDSRNARVL 108
Score = 45.3 bits (108), Expect = 2e-05
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 449 YGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 507
YG E + + A +A D + P + + G + + +A +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDT-----LYPERSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 508 KTIALNPNFHVA 519
K++ LN N
Sbjct: 166 KSLRLNRNQPSV 177
Score = 44.6 bits (106), Expect = 4e-05
Identities = 5/53 (9%), Positives = 16/53 (30%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
+A +++ +++ N + + +Y A + D
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
Score = 43.8 bits (104), Expect = 7e-05
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A E + + ++ + + ++ A + L+ ++ A D + A S
Sbjct: 159 QAKEYFEKSLR---LNRN-QPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLL 213
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
++ +F + A + L P +
Sbjct: 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
Score = 41.1 bits (97), Expect = 4e-04
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 509
+L + ++ A D + A S ++ +F + A +
Sbjct: 182 ADLLYKER------EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 510 IALNPNFHVARA 521
L P +
Sbjct: 236 KRLYPGSLEYQE 247
Score = 41.1 bits (97), Expect = 5e-04
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 471 DLDEAEK-------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA--LNPNFHVA 519
+ A++ D A G +YEEA + L + L P
Sbjct: 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 99.4 bits (249), Expect = 2e-24
Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 22/196 (11%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
D Y +G + G+Y +A+ L++ + H I
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV----AL--HLGIAYVKTGA 57
Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
V++ + + V + + V + +D A + +P N
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVL-------GLTYVQVQKYDLAVPLLIKVAEANPINF 110
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
++ + L G DEAI + A+ + + + + Q GR EEA+ F K
Sbjct: 111 NVRFRLG-VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169
Query: 340 ALPLARDEAE-LSHIY 354
A L + L+ +
Sbjct: 170 ANELDEGASVELALVP 185
Score = 78.6 bits (195), Expect = 4e-17
Identities = 30/208 (14%), Positives = 58/208 (27%), Gaps = 49/208 (23%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A+ L Q+ + D V+ + + + L+ + P+
Sbjct: 26 QAVMLLEQVYD---ADAF-DVDVALHLGIA-YVKTGAVDRGTELLERSLADAPDNVKVAT 80
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
G Y +Y+ A+ L K NP
Sbjct: 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNV---------------------------- 112
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
L + FD A + F ++ + P ++ A + G
Sbjct: 113 -----RFR-------LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS-YEQMGR 159
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTI 323
+EA+ +KA +D+ A L +
Sbjct: 160 HEEALPHFKKANELDEG---ASVELALV 184
Score = 52.5 bits (127), Expect = 4e-08
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
F +A A + PN + Y G++EEAL + K L+ V A
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182
Score = 51.3 bits (124), Expect = 1e-07
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ L+ + P+ G Y +Y+ A+ L K NP
Sbjct: 57 AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
Score = 49.4 bits (119), Expect = 4e-07
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+++A L++ D D G Y G + L++++A P+
Sbjct: 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78
Score = 49.4 bits (119), Expect = 4e-07
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A L + + +P + ++ G G+++EA+ + + L PN
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Score = 42.8 bits (102), Expect = 6e-05
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D Y +G + G+Y +A+ L++ +
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 100 bits (250), Expect = 4e-23
Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 25/267 (9%)
Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
A+ V+ DPK + A A + L ++ P+ +
Sbjct: 83 AVLLFEAAVQ---QDPKH-MEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMA 137
Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV---------HKMIVPGDRERV 227
+ +A L + P + +
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197
Query: 228 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
+ + F V ++ + ++D A + F ++ V P + L+
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257
Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
L +EA+ +A+ + + + LG + G EAV+ F +AL + R
Sbjct: 258 G-ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 346 DEAE--------LSHIYSLRDAAIAQM 364
+I+S A++ +
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSML 343
Score = 94.3 bits (235), Expect = 4e-21
Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 29/231 (12%)
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
P + + D A + A + DP +++ G Q A+
Sbjct: 60 PLRDHPQPFEEGLR-RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118
Query: 192 RNLDKTIALNPNFHVARAQRHF---VVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
L + + L P+ A V + Q+ + R+++
Sbjct: 119 SALRRCLELKPDNQTA----LMALAVSFT-----NESLQRQACEILRDWLRYTPAYAHLV 169
Query: 249 TLFAQ---------------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQA 292
T + L+ F +E F ++R+DP + V + ++
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229
Query: 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
G D+A+ A+S+ + + LG + EEAV + +AL L
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Score = 88.2 bits (219), Expect = 4e-19
Identities = 41/367 (11%), Positives = 87/367 (23%), Gaps = 94/367 (25%)
Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQY-EEALRNLDKTIALNPNFHVARAQRHFVVH 216
+D+D +K+ + + + + + Y + DK + + F
Sbjct: 12 SDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPF--- 68
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
+ + D A F +++ DP
Sbjct: 69 ---------------------------------EEGLRRLQEGDLPNAVLLFEAAVQQDP 95
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
++ + + AI + + + + A L +A +
Sbjct: 96 KHMEAWQYLGTT-QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154
Query: 337 FNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
L A + + + + I + S +
Sbjct: 155 LRDWLRYTPAYAH---LVTPAEEGAGGAGLGPSKRILGSLLSDSLF-----LEVKELFLA 206
Query: 397 NNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY---GNLE 453
+ + P + + G L
Sbjct: 207 A--VRLDP-------------TSI------------------------DPDVQCGLGVLF 227
Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
N SG ++ KA A V PN + + G Q EEA+ + + L
Sbjct: 228 NLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Query: 514 PNFHVAR 520
P + +R
Sbjct: 282 PGYIRSR 288
Score = 87.8 bits (218), Expect = 6e-19
Identities = 38/319 (11%), Positives = 81/319 (25%), Gaps = 55/319 (17%)
Query: 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
+ R + D A+ ++ + A T Q AI L
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALR 122
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182
+ +E + P A + AV S +A L + + P A +
Sbjct: 123 RCLE---LKPDN-QTALMALAVS-FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177
Query: 183 LF---------------GQYEEALRNLDKTIALNPNFHVARAQRHF-VVHKMIVPGDRER 226
+ E + L+P Q V+
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-----LSGE 232
Query: 227 VEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
++++ F N + + L + + A + R++ + P
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKL-------GATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-----------SCMFAYETLGTIEVQRG 328
+ + G EA++ +A+++ + + TL G
Sbjct: 286 RSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344
Query: 329 RLEEAVKCFNKALPLARDE 347
+ + + L
Sbjct: 345 QSDAYGAADARDLSTLLTM 363
Score = 37.7 bits (88), Expect = 0.007
Identities = 8/74 (10%), Positives = 15/74 (20%), Gaps = 15/74 (20%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF---------------GQYEEALRNLDK 508
+A L + + P A + + E
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206
Query: 509 TIALNPNFHVARAQ 522
+ L+P Q
Sbjct: 207 AVRLDPTSIDPDVQ 220
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 96.2 bits (240), Expect = 7e-23
Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 25/222 (11%)
Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 196
N + A+ D+ +A A +++A K DP ++ R +IY ++A + +
Sbjct: 9 NIKTQLAME-YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 197 TIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR---------NFVDTHSNVVEA 247
+++ P+ + + G R +S+ F + N
Sbjct: 68 ALSIKPDSAEINNNYGWFLC-----GRLNRPAESMAYFDKALADPTYPTPYIANLNK--- 119
Query: 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307
Q F AE Y RS+ P+ + A G + +A +K
Sbjct: 120 ----GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART-KMLAGQLGDADYYFKKYQ 174
Query: 308 SIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
S + + L L A + L +
Sbjct: 175 SRVEV--LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214
Score = 88.9 bits (221), Expect = 3e-20
Identities = 28/207 (13%), Positives = 74/207 (35%), Gaps = 25/207 (12%)
Query: 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222
AEK V++ Q Y Y +A +++ + +P +A R + +
Sbjct: 1 AEK-ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL---- 55
Query: 223 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRV 274
+ +++ + FR + + ++N + L + + YF++++
Sbjct: 56 --KVNDKAQESFRQALSIKPDSAEINNN-------YGWFLCGRLNRPAESMAYFDKALAD 106
Query: 275 D--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
P +++ + +G A ++++++ A++ L ++ G+L +
Sbjct: 107 PTYPTPYIANLNKG-ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165
Query: 333 AVKCFNKALPLARDEAELSHIYSLRDA 359
A F K + + A
Sbjct: 166 ADYYFKKYQSRVEVLQADDLLLGWKIA 192
Score = 49.6 bits (119), Expect = 6e-07
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
D+ +A A +++A K DP ++ R +IY ++A + + +++ P+
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 449 YGN-LENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
YG L + + + F KA AD P + +G GQ+ A L
Sbjct: 82 YGWFLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYL 136
Query: 507 DKTIALNPNFHVA 519
+++A P F A
Sbjct: 137 KRSLAAQPQFPPA 149
Score = 44.2 bits (105), Expect = 4e-05
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
AEK V++ Q Y Y +A +++ + +P +A
Sbjct: 1 AEK-ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44
Score = 43.0 bits (102), Expect = 8e-05
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
F A A L + P ++ + + L GQ +A K +
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180
Score = 37.6 bits (88), Expect = 0.006
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL-FGQYEEALRNLDKTIA--LNPNFHVA 519
KA +A + P+ A+ G C + E++ DK +A P ++A
Sbjct: 57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115
Score = 32.2 bits (74), Expect = 0.28
Identities = 13/103 (12%), Positives = 23/103 (22%), Gaps = 32/103 (31%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK---------- 196
F A A L + P ++ + + L GQ +A K
Sbjct: 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
Query: 197 ----------------------TIALNPNFHVARAQRHFVVHK 217
L NF + + + +
Sbjct: 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 97.8 bits (243), Expect = 6e-22
Identities = 43/313 (13%), Positives = 104/313 (33%), Gaps = 29/313 (9%)
Query: 44 GLSNGVELTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL 103
++ G ++ G E + ++ D L R E S K
Sbjct: 23 SMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--- 79
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
+ K ++ + +++ + A + + +A L +A
Sbjct: 80 ------VQEEMEKTLQQMEEVLGS---AQV-EAQALMLKGKALNVTPDYSPEAEVLLSKA 129
Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM---IV 220
K++P + +++ Q G++Y G A + N V+ V+ ++
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSG 188
Query: 221 PGDRERVEQSLKEFR-------NFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSI 272
V S+++ + + + +L+ + + A + ++
Sbjct: 189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248
Query: 273 RVD---PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR 329
+VD N L+++RA L + + EA++ +A ++D + + + R
Sbjct: 249 KVDRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
Query: 330 LEEAVKCFNKALP 342
L ++ K P
Sbjct: 308 LTSLLESKGKTKP 320
Score = 87.0 bits (215), Expect = 2e-18
Identities = 39/307 (12%), Positives = 95/307 (30%), Gaps = 64/307 (20%)
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
++++ + F D++ + QE+ + + + A +
Sbjct: 48 QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
+ + EA L+ KA+ ++ + A+ LG + ++G + A CF+ AL
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167
Query: 345 RDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRP 404
++ ++ + + R S+++ +++Q + ++
Sbjct: 168 KN-----------KVSLQNLSMVLRQLQTDSGDEHSRHVMD----SVRQAKL----AVQ- 207
Query: 405 ADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNL-----ENESGQK 459
++ D + L
Sbjct: 208 ----------------------MDVLDGR--------------SWYILGNAYLSLYFNTG 231
Query: 460 HAASDFTKAFADLDEAEKVD---PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
+A + +AEKVD + D + R ++ Y EAL + AL+P +
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291
Query: 517 HVARAQR 523
+ +
Sbjct: 292 PEPQQRE 298
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 94.9 bits (235), Expect = 1e-20
Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 15/216 (6%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
P ADS I G EEA+R K + + P F A + V+ + +
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------GK 58
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
++++L ++ + +A + L + +D GA + + R+I+++P A + + A
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
+ + GN+ EAI A+ + AY L + + K + + D
Sbjct: 119 S-IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177
Query: 347 EAELS--------HIYSLRDAAIAQMKVCERYNIKK 374
+ E + H + + + ER+
Sbjct: 178 QLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLC 213
Score = 89.9 bits (222), Expect = 6e-19
Identities = 40/247 (16%), Positives = 92/247 (37%), Gaps = 9/247 (3%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
++ A + + +A +A +V P A ++ + G+ +EAL +
Sbjct: 9 ADSLNNLANI-KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
+ I ++P F A + + +M + V+ +L+ + + + +A + A +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
D + A + ++++ P+ Y + A LQ + + + ++K +SI +
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC-LQIVCDWTDYDERMKKLVSIVADQLE 180
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
L ++ L F KA+ L I L K + + + +
Sbjct: 181 KN-RLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLR 239
Query: 376 VSPRSQN 382
V S +
Sbjct: 240 VGYVSSD 246
Score = 51.3 bits (122), Expect = 5e-07
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 8/136 (5%)
Query: 76 DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
+ A+R + +E A A A+V + +A+ + + + P
Sbjct: 24 NIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTF- 76
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
+A+ L D A A +++P AD++ I+ G EA+ +
Sbjct: 77 ADAYSNMGNT-LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 196 KTIALNPNFHVARAQR 211
+ L P+F A
Sbjct: 136 TALKLKPDFPDAYCNL 151
Score = 47.5 bits (112), Expect = 9e-06
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
D A A +++P AD++ I+ G EA+ + + L P+F A
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Score = 42.1 bits (98), Expect = 4e-04
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ +A +A +V P A ++ + G+ +EAL + + I ++P F A
Sbjct: 20 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 79
Query: 520 RAQR 523
+
Sbjct: 80 YSNM 83
Score = 42.1 bits (98), Expect = 4e-04
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
P ADS I G EEA+R K + + P F A
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45
Score = 41.3 bits (96), Expect = 8e-04
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+A EA ++ P AD+Y G + AL+ + I +NP F A +
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Query: 524 HFV 526
+
Sbjct: 118 ASI 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 84.7 bits (211), Expect = 9e-20
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 41/173 (23%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
A+++Y G Y G Y+EA+ K + L+P A
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------------------- 37
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
N+ Q D+D A EY+ +++ +DP +A + +
Sbjct: 38 ----------WYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAY 79
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
+G+ DEAI+ +KA+ +D A+ LG ++G +EA++ + KAL L
Sbjct: 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 72.0 bits (178), Expect = 2e-15
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 42/173 (24%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
A + D+ +A +A ++DP A+++Y G Y G Y+EA+ K
Sbjct: 3 AWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
+ L+P A N+
Sbjct: 62 LELDPRSAEA---------------------------------WYNL-------GNAYYK 81
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
Q D+D A EY+ +++ +DP +A + + +G+ DEAI+ +KA+ +D
Sbjct: 82 QGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELD 133
Score = 67.4 bits (166), Expect = 9e-14
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313
Q D+D A EY+ +++ +DP +A + + +G+ DEAI+ +KA+ +D
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
A+ LG ++G +EA++ + KAL L AE
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Score = 56.2 bits (137), Expect = 7e-10
Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 41/143 (28%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
A + D+ +A +A ++DP A+++Y G Y G Y+EA+
Sbjct: 35 AEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
K + L+P A N
Sbjct: 94 KALELDPRSAEA---------------------------------WYN-------LGNAY 113
Query: 256 VDQEDFDGAEEYFNRSIRVDPEN 278
Q D+D A EY+ +++ +DP +
Sbjct: 114 YKQGDYDEAIEYYQKALELDPRS 136
Score = 50.1 bits (121), Expect = 9e-08
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D+ +A +A ++DP A+++Y G Y G Y+EA+ K + L+P A
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 50.1 bits (121), Expect = 9e-08
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D+ +A +A ++DP A+++Y G Y G Y+EA+ K + L+P A
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Score = 46.2 bits (111), Expect = 2e-06
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ +A +A ++DP A+++Y G Y G Y+EA+ K + L+P
Sbjct: 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 42.0 bits (100), Expect = 7e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
A+++Y G Y G Y+EA+ K + L+P A
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 84.9 bits (210), Expect = 1e-17
Identities = 27/214 (12%), Positives = 53/214 (24%), Gaps = 12/214 (5%)
Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
L L + P VA M + + H
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM------GDTTAGEMAVQRGLALHPGH 56
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
EA +V Q+ A ++ PE+ + + L+ G + A
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA-LEDAGQAEAAAAAYT 115
Query: 305 KAISIDKSCMFAYETLGTIEVQRGR---LEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
+A + + L + L+ A+ E S +A
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAA 175
Query: 362 AQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR 395
Q+ + ++ + + + LR
Sbjct: 176 EQLACARTRA--QAIAASVRPLAPTRVRSKGPLR 207
Score = 64.9 bits (158), Expect = 3e-11
Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 11/195 (5%)
Query: 76 DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135
D + + + +A L+ A + +T + + + + P
Sbjct: 4 DGPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPG-H 56
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
A + V +A L +A P G GQ E A
Sbjct: 57 PEAVARLGRVR-WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
+ L P AQ ++ D ++ + R V VE ++
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRL---CDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172
Query: 256 VDQEDFDGAEEYFNR 270
E A
Sbjct: 173 SAAEQLACARTRAQA 187
Score = 50.6 bits (121), Expect = 1e-06
Identities = 13/72 (18%), Positives = 18/72 (25%)
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
+ + +A L +A P G GQ E A +
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 512 LNPNFHVARAQR 523
L P AQ
Sbjct: 120 LLPEEPYITAQL 131
Score = 48.7 bits (116), Expect = 3e-06
Identities = 11/67 (16%), Positives = 21/67 (31%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
+D + L A + P ++ G + + +AL+P A A
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 522 QRHFVWT 528
+ V
Sbjct: 62 RLGRVRW 68
Score = 41.4 bits (97), Expect = 6e-04
Identities = 8/64 (12%), Positives = 18/64 (28%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D T + + P ++ + G++ ++ EA L + P
Sbjct: 34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Query: 520 RAQR 523
Sbjct: 94 ALWL 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 79.4 bits (195), Expect = 1e-16
Identities = 48/312 (15%), Positives = 90/312 (28%), Gaps = 36/312 (11%)
Query: 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLT 122
D L K AF Y I S+ + L RA Y+ + ++++
Sbjct: 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRA--YLAQRKYGVVLDEIK 58
Query: 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE--AEKVDPNVADSYYQRGQI 180
++ +L + S A+LD + VD I
Sbjct: 59 --------PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110
Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240
Y + ALR L + +L + +R++ + KE + D
Sbjct: 111 YFYDQNPDAALRTLHQGDSLECMAMTVQILLK-----------LDRLDLARKELKKMQDQ 159
Query: 241 HSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298
+ A V + E A F L +A + +G +
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEA 218
Query: 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL-------PLARDEAELS 351
A ++++A+ D L + G+ E + L P ++
Sbjct: 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE 278
Query: 352 HIYSLRDAAIAQ 363
+ + D + Q
Sbjct: 279 NDF---DRLVLQ 287
Score = 52.4 bits (125), Expect = 1e-07
Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 24/211 (11%)
Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
+V +++Y G Y++ + + +P V R F+ + V
Sbjct: 5 DVKNAFYI--------GSYQQCINEAQRVKPSSPERDVER--DVFLYRAYLAQRKYGVVL 54
Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR--SIRVDPENASLYVHRA 286
+K + + ++A +FA+ L D +R S VD N + + A
Sbjct: 55 DEIK------PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAA 108
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
+ N D A++ + + S++ M I ++ RL+ A K K D
Sbjct: 109 -SIYFYDQNPDAALRTLHQGDSLECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDED 162
Query: 347 EAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
+ A K+ + Y I ++++
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Score = 45.9 bits (108), Expect = 2e-05
Identities = 29/265 (10%), Positives = 70/265 (26%), Gaps = 43/265 (16%)
Query: 260 DFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
+ R PE ++++RA L A+ + I+ + + + + A
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYL---AQRKYGVVLDEIKPSSAPE---LQA 67
Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376
R + V ++ + ++++ L AA
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREM---SRSVDVTNTTFLLMAASIYFY----------- 113
Query: 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIP 436
+N A++ L + + + A + +D+ D +K + D
Sbjct: 114 -------DQNPDAALRTLHQGDSLEC-MAMTVQILLKLDRLDLARKELKKMQDQD----- 160
Query: 437 GDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496
E++ A+ E + +
Sbjct: 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213
Query: 497 GQYEEALRNLDKTIALNPNFHVARA 521
G++E A L + + +
Sbjct: 214 GRWEAAEGVLQEALDKDSGHPETLI 238
Score = 34.7 bits (79), Expect = 0.060
Identities = 32/280 (11%), Positives = 72/280 (25%), Gaps = 49/280 (17%)
Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
VE + + Q + + S + + ++ L + D +
Sbjct: 31 ERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA----EYLASHSRRDAIVA 86
Query: 302 LIEKAISIDKSCMFAYE--TLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR-- 357
+++ +S +I + A++ ++ L A I
Sbjct: 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL-ECMAMTVQILLKLDR 145
Query: 358 -DAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDK 416
D A ++K + + E + QL + +K +
Sbjct: 146 LDLARKELKKMQDQD---------------EDATLTQLATAWVSLAAGGEK------LQD 184
Query: 417 ADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAE 476
A Y + + S ++ G G + A L EA
Sbjct: 185 AYYIFQEMADKCSPTLLLLNG-----------QAACHMAQG------RWEAAEGVLQEAL 227
Query: 477 KVDPNVADSYYQRGQIYCLFGQYEEALRN-LDKTIALNPN 515
D ++ + G+ E L + + +
Sbjct: 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 75.5 bits (186), Expect = 1e-16
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 1/132 (0%)
Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
+ +E +D A++ F +D +A ++ Q+
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQSL 65
Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
G ++A++ +D + +Q G L+ A F A LA + +
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 354 YSLRDAAIAQMK 365
+ A + +
Sbjct: 126 AARAGAMLEAVT 137
Score = 67.1 bits (164), Expect = 1e-13
Identities = 14/155 (9%), Positives = 34/155 (21%), Gaps = 41/155 (26%)
Query: 158 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217
L + + + Y G G++++A + L+
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA------------ 52
Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277
++ A + ++ +D
Sbjct: 53 ----------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84
Query: 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
H A G++D A A ++ +
Sbjct: 85 EPRFPFHAAEC-HLQLGDLDGAESGFYSARALAAA 118
Score = 51.7 bits (124), Expect = 3e-08
Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 43/159 (27%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
+ + A + A +D A + G G YE+AL++
Sbjct: 18 LEQLYALGFN-QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
++ N A+
Sbjct: 77 YGALMDINEPRFPFHA----------------------------------------AECH 96
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYV--HRAMLMLQA 292
+ D DGAE F + + + RA ML+A
Sbjct: 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
Score = 51.3 bits (123), Expect = 5e-08
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 5/88 (5%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
A + L +D + + + +A +D N +
Sbjct: 36 DAQKIFQALCM---LDHY-DARYFLGLGAC-RQSLGLYEQALQSYSYGALMDINEPRFPF 90
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ + G + A AL
Sbjct: 91 HAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 46.7 bits (111), Expect = 2e-06
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A +D A + G G YE+AL++ ++ N
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88
Score = 45.9 bits (109), Expect = 4e-06
Identities = 7/56 (12%), Positives = 15/56 (26%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ + +A +D N + + + G + A AL
Sbjct: 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 45.5 bits (108), Expect = 5e-06
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 470 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
L + + + Y G G++++A + L+
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 80.1 bits (197), Expect = 2e-16
Identities = 26/218 (11%), Positives = 68/218 (31%), Gaps = 18/218 (8%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
R V+ D + + + P ++ R + + L + + +
Sbjct: 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196
Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
+ A R +V+ + + + L+ + V+ + +
Sbjct: 197 AKNYHAWQHRQWVIQEF------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250
Query: 262 DGAE------EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSC 313
+ +Y I++ P N S + + ++ + + L+ + + + S
Sbjct: 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSS 308
Query: 314 MFAYETLGTI--EVQRGRLEEAVKCFNKALPLARDEAE 349
+ L I ++ + + NKAL L A+
Sbjct: 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 346
Score = 61.2 bits (148), Expect = 3e-10
Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 12/181 (6%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
D Y + + E A + I LN + R ++ + ++
Sbjct: 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKD 147
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
+ + + ++ + ++ D E+ + D +N + HR
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGR------LEEAVKCFNKA 340
+ +Q D ++ +++ + D + + LE V+ +
Sbjct: 208 WV-IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266
Query: 341 L 341
+
Sbjct: 267 I 267
Score = 58.2 bits (140), Expect = 3e-09
Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 8/145 (5%)
Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
I + F V+ + ER E++ K R+ ++ ++ +L
Sbjct: 90 IIYSDKFRDVYDYFRAVLQRD------ERSERAFKLTRDAIELNAANYTVWHFRRVLLKS 143
Query: 258 -QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
Q+D Y I P+N ++ HR +L ++ + + ++ I ++ D A
Sbjct: 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 317 YETLGTIEVQRGRLEEAVKCFNKAL 341
++ + + + ++ ++ L
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLL 227
Score = 51.6 bits (123), Expect = 4e-07
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305
+ F VL E + A + +I ++ N +++ R +L+ + ++ E + I
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157
Query: 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
I + + + ++ L +A+ H + R I + K
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFK 214
Query: 366 VCE 368
+ +
Sbjct: 215 LWD 217
Score = 45.8 bits (108), Expect = 2e-05
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTK-AFADLDEAEKVDPNVADSYYQRGQIY-CL 495
+P I S+K+ ++ + + ++ AF +A +++ ++ R + L
Sbjct: 85 NPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL 144
Query: 496 FGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
E + + I P + R +
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175
Score = 45.1 bits (106), Expect = 4e-05
Identities = 12/87 (13%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
D ++ + + D ++ R + F ++ L+ +D+ + + + QR
Sbjct: 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240
Query: 524 HFVWTSTLAELMAFSDEFMIPK-ITYY 549
+FV ++ ++D ++ + + Y
Sbjct: 241 YFV----ISNTTGYNDRAVLEREVQYT 263
Score = 40.4 bits (94), Expect = 0.001
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHV 518
D + + + P ++ R + + L + + + N+H
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Score = 30.4 bits (68), Expect = 1.5
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQI------YCLFGQYEEALRNLDKTIALNPNFHV 518
+ +D+ K D + QR + Y E ++ + I L P+
Sbjct: 216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275
Query: 519 A-RAQRHFVWTSTLAELMAFSDEF 541
A + + L++ ++
Sbjct: 276 AWNYLKGILQDRGLSKYPNLLNQL 299
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 73.0 bits (179), Expect = 3e-15
Identities = 28/166 (16%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
P + RA+ + ++ E L+ ++ + + E L + + Q D+
Sbjct: 1 PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60
Query: 262 DGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNV-DEAIKLIEKAISIDKSCMFAYET 319
+ + +++++ ENA LY A +L QA ++ + +I+KA+++D + + A
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120
Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK 365
L + + +A++ + K + L + + + A +
Sbjct: 121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166
Score = 61.4 bits (149), Expect = 3e-11
Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
+ + L + + +P ++ + G+ Y Y +L + + L
Sbjct: 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78
Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
A V + + Q+ + SN + A L A Q ++ A
Sbjct: 79 ELYAALATV---LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 266 EYFNRSIRVDPENASLY-----VHRAMLMLQAR 293
E + + + ++ + ++ A L+ +
Sbjct: 136 ELWQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
Score = 44.9 bits (106), Expect = 1e-05
Identities = 9/71 (12%), Positives = 22/71 (30%)
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
+ Q + + L + + +P ++ + G+ Y Y +L + +
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 512 LNPNFHVARAQ 522
L A
Sbjct: 73 LRGENAELYAA 83
Score = 36.8 bits (85), Expect = 0.007
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ A +D+A +D N + + Y +A+ K + LN
Sbjct: 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Score = 31.0 bits (70), Expect = 0.60
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY---EEALRNLDKTIALNPNFHVAR 520
D++ + +A ++ A+ Y + + +DK +AL+ N A
Sbjct: 59 DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 72.3 bits (177), Expect = 3e-15
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 1/140 (0%)
Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
+ + S+ +E A ++ A F +D ++ ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
QA G D AI +D +Q G L EA A L
Sbjct: 62 G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 346 DEAELSHIYSLRDAAIAQMK 365
+ E + + + + +K
Sbjct: 121 NXPEFXELSTRVSSMLEAIK 140
Score = 61.1 bits (148), Expect = 2e-11
Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 41/182 (22%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+ ++ + + Y G YE+A L+
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS------ 55
Query: 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271
+D A ++
Sbjct: 56 ----------------------------------RFFLGLGACRQAMGQYDLAIHSYSYG 81
Query: 272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
+D H A L G + EA + A + + E + ++
Sbjct: 82 AVMDIXEPRFPFHAAEC-LLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140
Query: 332 EA 333
Sbjct: 141 LK 142
Score = 44.1 bits (104), Expect = 1e-05
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ ++ + + Y G YE+A L+
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Score = 43.0 bits (101), Expect = 4e-05
Identities = 7/63 (11%), Positives = 19/63 (30%)
Query: 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
+ + + + A +D + + G GQY+ A+ + ++
Sbjct: 29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88
Query: 205 HVA 207
Sbjct: 89 PRF 91
Score = 42.2 bits (99), Expect = 8e-05
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ A +D + + G GQY+ A+ + ++
Sbjct: 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Score = 35.7 bits (82), Expect = 0.011
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
G + I I + +L + Q G E+A F L ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 75.5 bits (185), Expect = 6e-15
Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 39/222 (17%)
Query: 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY--YQRGQIYCLFG---QYEEALRNLD 195
+ L A + + +K+ P+ + + Y L G A L
Sbjct: 164 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLG 223
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
+ + +P F ARA++ V +Q
Sbjct: 224 EIVQSSPEFTYARAEKALV--------------------------------DIVRHSQHP 251
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCM 314
+D++ + + + N +++ + +G DE+ + I I ++ S +
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL 311
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
Y LG + +G EA + A L L I +
Sbjct: 312 -NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG 352
Score = 57.4 bits (138), Expect = 4e-09
Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 60/237 (25%)
Query: 86 EEIESTSSNHTKALARLLRATVYIFTS---QSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142
E ++ + L +A Y+ +A E L ++V+ P+ A ++
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEF-TYARAEK 239
Query: 143 AVVHLHAASDFTKAFADLDEAEKV---------DPNVADSYYQRGQIYCLFGQYEEALRN 193
A+V + S L N++ Y + + G+ +E+ +
Sbjct: 240 ALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA 299
Query: 194 LDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQ 253
++ I L ++ L +
Sbjct: 300 INTGIDLEMSWL-----------------------------------------NYVLLGK 318
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
V + A + + + + P +LY + + +V + ++K ++ +
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI---FQTSVPYVVPYLDKFLASE 372
Score = 48.2 bits (114), Expect = 4e-06
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 12/162 (7%)
Query: 50 ELTNGDTNESHELDLLSKAKRAFEHED---YLTAIRHCTEEIESTSSNHTKALARLLRAT 106
L + L +A H D A E ++S+ AR +A
Sbjct: 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---TYARAEKAL 241
Query: 107 VYIFTSQ----STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS-DFTKAFADLD 161
V I K + L +++ P++ + I + +++ ++
Sbjct: 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301
Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
++ + +Y G++Y + G EA L P
Sbjct: 302 TGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342
Score = 44.7 bits (105), Expect = 5e-05
Identities = 10/79 (12%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+++ ++ ++ + +Y G++Y + G EA L P +
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
Query: 524 HFVWTSTLAELMAFSDEFM 542
+ ++ +++ ++ + D+F+
Sbjct: 351 NGIFQTSVPYVVPYLDKFL 369
Score = 40.9 bits (95), Expect = 8e-04
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 458 QKHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
++D + N++ Y + + G+ +E+ + ++ I L +
Sbjct: 250 HPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Query: 516 F 516
+
Sbjct: 310 W 310
Score = 31.2 bits (70), Expect = 0.78
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 468 AFADLDEAEKVDPNVADSY--YQRGQIYCLFG---QYEEALRNLDKTIALNPNFHVARAQ 522
+ +K+ P+ + + Y L G A L + + +P F ARA+
Sbjct: 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE 238
Query: 523 RHFVW 527
+ V
Sbjct: 239 KALVD 243
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 69.8 bits (171), Expect = 2e-14
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
+LK+ D ++ +A ++ + AE +F D N + A
Sbjct: 23 ATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA- 78
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
+ Q + +A L A ++ K+ G +++ +A +CF + + DE
Sbjct: 79 IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
Score = 60.6 bits (147), Expect = 3e-11
Identities = 18/165 (10%), Positives = 37/165 (22%), Gaps = 41/165 (24%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
A D + A L + + ++ D Y + G+ EEA +
Sbjct: 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV- 70
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
+ A + +E F A +
Sbjct: 71 ---------------------------------------DYIMGLAAIYQIKEQFQQAAD 91
Query: 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
+ + + + + H +A + E I
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC-QLRLKAPLKAKECFELVIQHSN 135
Score = 48.6 bits (116), Expect = 5e-07
Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 42/146 (28%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
+ +A D D IY + Q+++A AL N +
Sbjct: 46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
Q + + A+E
Sbjct: 106 PVFHT----------------------------------------GQCQLRLKAPLKAKE 125
Query: 267 YFNRSIRVDPENASLYVHRAMLMLQA 292
F I+ + +A L A
Sbjct: 126 CFELVIQHSNDEK--LKIKAQSYLDA 149
Score = 47.1 bits (112), Expect = 2e-06
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 8/125 (6%)
Query: 87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146
+I + + + A + + +A L D V+ + A +
Sbjct: 27 DINAIPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCI---YDFY-NVDYIMGLAAI- 79
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
F +A A + N + GQ +A + I + + +
Sbjct: 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Query: 207 A-RAQ 210
+AQ
Sbjct: 140 KIKAQ 144
Score = 44.0 bits (104), Expect = 2e-05
Identities = 10/56 (17%), Positives = 16/56 (28%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+A D D IY + Q+++A AL N +
Sbjct: 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106
Score = 43.6 bits (103), Expect = 3e-05
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
F +A A + N + GQ +A + I + + +
Sbjct: 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140
Query: 520 -RAQ 522
+AQ
Sbjct: 141 IKAQ 144
Score = 43.6 bits (103), Expect = 3e-05
Identities = 11/69 (15%), Positives = 20/69 (28%)
Query: 451 NLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
N+ A D + A L + + ++ D Y + G+ EEA
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 511 ALNPNFHVA 519
+
Sbjct: 64 IYDFYNVDY 72
Score = 29.8 bits (67), Expect = 1.2
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ ++ +I M + +GR+EEA F +
Sbjct: 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 70.1 bits (172), Expect = 6e-14
Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 39/189 (20%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
+ V+ D+ A V + + G +Y + EA + ++
Sbjct: 8 SLWNEGVL-AADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63
Query: 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR--------NFVDTHSNVVEACT 249
I + + VA QR + ++ E+ + ++K+ + N + + +
Sbjct: 64 INRDKHLAVAYFQRGMLYYQT------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117
Query: 250 LF--------AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301
LF A + +E++ AEE + + E +D+A++
Sbjct: 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-------------RHSKIDKAME 164
Query: 302 LIEKAISID 310
+ K +
Sbjct: 165 CVWKQKLYE 173
Score = 54.7 bits (132), Expect = 9e-09
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA-LNPNFHVARAQ 522
+ T+A + D ++A +Y+QRG +Y +Y+ A+++L + + L N +
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 523 RHFVWTSTLAE 533
+ E
Sbjct: 112 LGLQFKLFACE 122
Score = 52.8 bits (127), Expect = 5e-08
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
NE D+ A V + + G +Y + EA + ++I +
Sbjct: 11 NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 514 PNFHVARAQR 523
+ VA QR
Sbjct: 68 KHLAVAYFQR 77
Score = 42.4 bits (100), Expect = 1e-04
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 450 GNLENESGQ-KHAASDFTKAFADLDE---------AEKVDPNVADSYYQRGQIYCLFGQY 499
G L ++ + A D +A L + + Y +Y ++
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 500 EEALRNLDKTIALNPN 515
++A L ++
Sbjct: 138 KKAEEQLALATSMKSE 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 67.4 bits (166), Expect = 7e-14
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
N + N+ Q D+D A EY+ +++ +DP NA + + +G+
Sbjct: 7 NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
DEAI+ +KA+ +D + A+ LG ++G +EA++ + KAL L + AE
Sbjct: 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 57.8 bits (141), Expect = 2e-10
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 41/154 (26%)
Query: 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188
++DP A + D+ +A +A ++DPN A+++Y G Y G Y+
Sbjct: 2 AMDPGNSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248
EA+ K + L+PN A N+
Sbjct: 61 EAIEYYQKALELDPNNAEA---------------------------------WYNL---- 83
Query: 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
Q D+D A EY+ +++ +DP NA
Sbjct: 84 ---GNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 51.2 bits (124), Expect = 3e-08
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+AIE + +E +DP A + D+ +A +A ++DPN A+++Y
Sbjct: 27 EAIEYYQKALE---LDPN-NAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
G Y G Y+EA+ K + L+PN A
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 50.1 bits (121), Expect = 9e-08
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D+ +A +A ++DPN A+++Y G Y G Y+EA+ K + L+PN A
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 49.7 bits (120), Expect = 1e-07
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D+ +A +A ++DPN A+++Y G Y G Y+EA+ K + L+PN A
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 43.9 bits (105), Expect = 1e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
N A+++Y G Y G Y+EA+ K + L+PN A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 65.8 bits (161), Expect = 3e-13
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
Q+DF+ A +++++I +DP N + Y ++A + E ++ EKA+ + +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAV-YFEEKKFAECVQFCEKAVEVGRETR 76
Query: 315 F-------AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
A G ++ L AV+ F+++L RD + +
Sbjct: 77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
Score = 50.4 bits (121), Expect = 7e-08
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
+ A + G +E+A + DK I L+P+ + V +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---KKFAE 60
Query: 227 V----EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
E++++ R + + +A + Q D A ++F+RS+ + +
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
+ + +L N + DF KA D+A ++DP+ Y + +Y ++ E +
Sbjct: 6 DAAIAEKDLGNA---AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 504 RNLDKTIALNPNFHVARAQR 523
+ +K + +
Sbjct: 63 QFCEKAVEVGRETRADYKLI 82
Score = 40.0 bits (94), Expect = 3e-04
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN------ 169
KA + +E +DP + +A V+ F + ++A +V
Sbjct: 26 KAHVHYDKAIE---LDPSNIT-FYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYK 80
Query: 170 -VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+A + + G + A++ ++++ +
Sbjct: 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 39.2 bits (92), Expect = 5e-04
Identities = 12/66 (18%), Positives = 28/66 (42%)
Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ + ++A +KAI +D S + Y + + + E V+ KA+ + R+
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77
Query: 350 LSHIYS 355
+ +
Sbjct: 78 DYKLIA 83
Score = 36.9 bits (86), Expect = 0.003
Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 464 DFTKAFADLDEAEKVDPN-------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
F + ++A +V +A + + G + A++ ++++ +
Sbjct: 57 KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 70.4 bits (172), Expect = 3e-13
Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 30/309 (9%)
Query: 67 KAKRAFEHEDYLTAIRHCTE--EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL 124
+A+ A + A R E +++ +A + V + T+++ + Q
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 125 VE--DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSY 174
+ + + I+++ + L A A+ ++A ++ P
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEI-LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV--HKMIVPGDRERVEQSLK 232
R Q+ + + +EA + I + ++ + + + + GD + L
Sbjct: 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198
Query: 233 EFRNFVDTHSNVVEACTLFAQVLV----DQEDFDGAEEYFNRSIRVDPEN----ASLYVH 284
N + + + +V V D A + + + + N + +
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET------LGTIEVQRGRLEEAVKCFN 338
A + G + A ++E+ +S + L + Q GR +A +
Sbjct: 259 IARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317
Query: 339 KALPLARDE 347
AL LA
Sbjct: 318 DALKLANRT 326
Score = 67.7 bits (165), Expect = 3e-12
Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 26/302 (8%)
Query: 86 EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD-PKIKVNAHIKRAV 144
EI+ + A LRA V I +A +E+ ++ A
Sbjct: 2 HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE 61
Query: 145 VHLHAASDFTKAFADLDEAEKV------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198
V H + T++ A + + E++ S Q+ +I G + A +K
Sbjct: 62 VL-HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
Query: 199 ALNPNFHVARAQRHFVVHKMIVP-----GDRERVEQSLKEFRNFVDT--HSNVVEACTLF 251
L H+ + H + ++ + E S + + + ++ +
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 305
Q + + D D A NR + + Q G+ A +
Sbjct: 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240
Query: 306 AISIDKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH-IYSLRDAA 360
+ + + + ++ G E A + AR +S +L
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300
Query: 361 IA 362
Sbjct: 301 QL 302
Score = 60.0 bits (145), Expect = 6e-10
Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 19/205 (9%)
Query: 177 RGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVV-HKMIVPGDRERVEQSLKEF 234
R Q+ G +EA R + P + +R V+ + G+ R +++
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 235 RNF---VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 283
D + + +++L Q A E ++ ++ P + L
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISI-----DKSCMFAYETLGTIEVQRGRLEEAVKCFN 338
RA L L A +DEA I + + + L + RG L+ A N
Sbjct: 140 IRAQL-LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 198
Query: 339 KALPLARDEAELSHIYSLRDAAIAQ 363
+ L + S S +
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVI 223
Score = 48.4 bits (115), Expect = 3e-06
Identities = 40/273 (14%), Positives = 95/273 (34%), Gaps = 23/273 (8%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKAI 307
AQV ++ + D AE ++ P A +L +G + ++ L+++
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 308 SIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
+ + +++ I +G L+ A + KA L E L +
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN-EQHLEQLPMHEFLVR 139
Query: 362 AQMKVC-ERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DY 419
+ ++ + + + I +Q + ++I+ + G +D A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---LDNARSQ 196
Query: 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479
++ ++L + Y D + +G K AA+++ + A + A +
Sbjct: 197 LNRLENLLGNGKYHS---DWISNANKV--RVIYWQMTGDKAAAANWLRHTAKPEFAN--N 249
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+ + + L G++E A L++
Sbjct: 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282
Score = 33.8 bits (77), Expect = 0.13
Identities = 14/86 (16%), Positives = 28/86 (32%)
Query: 450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 509
G + + G+ + + + V S Q+ +I G + A +K
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 510 IALNPNFHVARAQRHFVWTSTLAELM 535
L H+ + H A+L+
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLL 145
Score = 30.3 bits (68), Expect = 1.8
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 449 YGNLENESGQ-KHAASDFTKAFADLDEAE-KVDPNVADSYYQRGQIYCLFGQYEEALRNL 506
+ G + A KAF ++E + P R Q+ + + +EA +
Sbjct: 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158
Query: 507 DKTIALNPNFHVARAQRHFVWTSTLA 532
I + ++ + + +
Sbjct: 159 RSGIEVLSSYQPQQQLQCLAMLIQCS 184
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 65.7 bits (161), Expect = 4e-13
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
+ E+F+ A ++ ++I ++P NA + +RA L GN A++ E+AI ID +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPA 78
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
AY +G + EAV + KAL L D
Sbjct: 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116
Score = 61.5 bits (150), Expect = 1e-11
Identities = 31/172 (18%), Positives = 48/172 (27%), Gaps = 44/172 (25%)
Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221
+ D A+ G +E A+ K I LNP V R
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR---------- 52
Query: 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
A ++ GA + R+I +DP +
Sbjct: 53 ------------------------------AAAYSKLGNYAGAVQDCERAICIDPAYSKA 82
Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
Y + L + EA+ +KA+ +D L E +L EA
Sbjct: 83 YGRMGLA-LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE---LKLREA 130
Score = 54.5 bits (132), Expect = 2e-09
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 51/160 (31%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
+F A +A +++P A + R Y G Y A+++ ++ I ++P +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
A + L A
Sbjct: 82 AYGRM----------------------------------------GLALSSLNKHVEAVA 101
Query: 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
Y+ +++ +DP+N + N+ A + +A
Sbjct: 102 YYKKALELDPDNE-----------TYKSNLKIAELKLREA 130
Score = 51.4 bits (124), Expect = 3e-08
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
A+ + +E ++P V RA + ++ A D + A +DP + +Y
Sbjct: 30 AAVHFYGKAIE---LNPANAV-YFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYG 84
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
+ G ++ EA+ K + L+P+ ++ K+
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Score = 50.3 bits (121), Expect = 8e-08
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
E+E+ NE + +F A +A +++P A + R Y G Y A+
Sbjct: 10 AEAERLKTEGNE---QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 504 RNLDKTIALNPNFHVA 519
++ ++ I ++P + A
Sbjct: 67 QDCERAICIDPAYSKA 82
Score = 48.7 bits (117), Expect = 3e-07
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
++ A D + A +DP + +Y + G ++ EA+ K + L+P+ ++
Sbjct: 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 39.9 bits (94), Expect = 3e-04
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 474 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---RAQ 522
+ D A+ G +E A+ K I LNP V RA
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAA 54
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 64.3 bits (157), Expect = 6e-13
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
E + +N L D A+ + A+ D + A++ LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAEL 350
+G A + + L A+ +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
Score = 55.4 bits (134), Expect = 8e-10
Identities = 17/146 (11%), Positives = 38/146 (26%), Gaps = 40/146 (27%)
Query: 156 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215
L+ + + G+ Y Q++ AL +L + +P +
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----------- 52
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275
A + L Q D GA + + +
Sbjct: 53 -----------------------------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83
Query: 276 PENASLYVHRAMLMLQARGNVDEAIK 301
V + + + R ++A++
Sbjct: 84 QSRGDQQVVKELQVFLRRLAREDALE 109
Score = 50.0 bits (120), Expect = 7e-08
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
ER+E L + + + + + + E FD A + ++ DP + +
Sbjct: 6 ERLEAMLAQGTDNMLLRFTL-------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRGRLEEA 333
LQ +G+ A + E ++ +S + L + R +
Sbjct: 59 LG-KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
Score = 48.5 bits (116), Expect = 3e-07
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176
E L ++ + + F A L A DP + ++
Sbjct: 4 ITERLEAMLAQGTDNML----LRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Query: 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
G+ G A + + +A + + +
Sbjct: 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93
Score = 44.2 bits (105), Expect = 7e-06
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
F A L A DP + ++ G+ G A + + +A + + +
Sbjct: 34 QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93
Score = 43.9 bits (104), Expect = 1e-05
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
L+ + + G+ Y Q++ AL +L + +P + VA
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Score = 42.7 bits (101), Expect = 3e-05
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ + +E ++ M TLG + + + A+ AL +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 66.9 bits (163), Expect = 2e-12
Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
+ A + R+I +P A Y +RA+ L+ ++A+ +A+ +D + A+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 75
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
LG +++ +EA+ +A LA+++ IA+ K ++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 135
Query: 378 PRSQNITKNEKLAIKQLRENNDI 400
+ +A ++ RE +
Sbjct: 136 ESELHSYLTRLIAAERERELEEC 158
Score = 45.3 bits (107), Expect = 3e-05
Identities = 29/198 (14%), Positives = 66/198 (33%), Gaps = 9/198 (4%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A + + + N RA+ +L +A AD A ++D +++
Sbjct: 22 EAAACYGRAITRNPLVAVYYTN----RALCYLKM-QQPEQALADCRRALELDGQSVKAHF 76
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFR 235
GQ Y+EA+ NL + +L + ++ +++ S++E R
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----KKKRWNSIEERR 132
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
++ + + A+ + E+ E + + A + M
Sbjct: 133 IHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192
Query: 296 VDEAIKLIEKAISIDKSC 313
+ + +K D C
Sbjct: 193 FSQVDEKRKKRDIPDYLC 210
Score = 41.4 bits (97), Expect = 4e-04
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
+A AD A ++D +++ GQ Y+EA+ NL + +L +
Sbjct: 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
Score = 38.7 bits (90), Expect = 0.003
Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 44/228 (19%)
Query: 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
+ +A A A +P VA Y R Y Q E+AL + + + L+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----- 71
Query: 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
V+A Q ++ E +D A
Sbjct: 72 -----------------------------------VKAHFFLGQCQLEMESYDEAIANLQ 96
Query: 270 RSIRVDPENASLYVHRAMLMLQ-ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
R+ + E + L+ A+ +I+ E+ I + L E +R
Sbjct: 97 RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE--ERRIHQESELHSYLTRLIAAERER- 153
Query: 329 RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376
LEE + A+ + I + D +A M +K+
Sbjct: 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201
Score = 37.6 bits (87), Expect = 0.007
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF---HV 518
+ +A A A +P VA Y R Y Q E+AL + + + L+ H
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 519 ARAQRHF 525
Q
Sbjct: 77 FLGQCQL 83
Score = 37.2 bits (86), Expect = 0.010
Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 41/245 (16%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
A ++G + +Y EA + I NP V R
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR------------------- 44
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
A + + + A R++ +D ++ +
Sbjct: 45 ---------------------ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC-Q 82
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
+ DEAI +++A S+ K + ++ + + + + +
Sbjct: 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY 142
Query: 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK 410
+ + + + E K + + +++ + +K K
Sbjct: 143 LTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202
Query: 411 TVVMD 415
+ D
Sbjct: 203 RDIPD 207
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 62.5 bits (153), Expect = 3e-12
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DK 311
+ D ++ + + F ++I++DPE + ++ + L +EA+ I++ D+
Sbjct: 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDE 73
Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
+ E +
Sbjct: 74 YNKDVWAAKADALRYIEGKEVEAEIAEARA 103
Score = 61.7 bits (151), Expect = 5e-12
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 43/147 (29%)
Query: 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225
+ + YY G + G Y E++ +K I L+P
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY------------------ 42
Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR--SIRVDPENASLYV 283
+ L + E ++ A + +N ++ D N ++
Sbjct: 43 ---------------WLMK-------GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISID 310
+A L+ + ++ E ++
Sbjct: 81 AKADA-LRYIEGKEVEAEIAEARAKLE 106
Score = 55.9 bits (136), Expect = 5e-10
Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 196
+ V+ + A ++T++ ++A ++DP + + +G+ +YEEA+ +
Sbjct: 7 EEYYLEGVL-QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 197 TIALNPNFHVARA 209
I + + +
Sbjct: 66 VINVIEDEYNKDV 78
Score = 54.8 bits (133), Expect = 1e-09
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+ +N Y ++ GN E+I L EKAI +D + G R EEA
Sbjct: 1 MVDQNPEEYYLEG-VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
Query: 334 VKCFNKALPLARD 346
V C+N + + D
Sbjct: 60 VDCYNYVINVIED 72
Score = 54.4 bits (132), Expect = 2e-09
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
++T++ ++A ++DP + + +G+ +YEEA+ + I + + +
Sbjct: 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78
Score = 48.6 bits (117), Expect = 2e-07
Identities = 10/92 (10%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA--EKVDPNVADS 173
++I+ + ++ +DP+ + + + L+ + +A + D D
Sbjct: 24 ESIDLFEKAIQ---LDPE-ESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDEYNKDV 78
Query: 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
+ + E + L + H
Sbjct: 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
Score = 48.2 bits (116), Expect = 3e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
+ + YY G + G Y E++ +K I L+P
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
Score = 45.9 bits (110), Expect = 2e-06
Identities = 6/53 (11%), Positives = 12/53 (22%), Gaps = 2/53 (3%)
Query: 467 KAFADLDEA--EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517
+A + D D + + E + L + H
Sbjct: 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
Score = 32.8 bits (76), Expect = 0.067
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
Y G ++ G E++ F KA+ L +E++
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK 41
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 67.2 bits (164), Expect = 4e-12
Identities = 27/234 (11%), Positives = 87/234 (37%), Gaps = 26/234 (11%)
Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ + ++D+ + + + Y+ RG +Y A++ K +
Sbjct: 76 RIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135
Query: 204 F--HVARAQRHF---VVHKMIVPGDRER----VEQSLKEFRNFVDTHSNVVEACTLFAQV 254
+ +A+ F + + Q+ + ++ + +++ +LFA
Sbjct: 136 VKDRIEKAEFFFKMSESYYYM--KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193
Query: 255 LVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
+D + ++ A +F ++ + + L ++ ++AI ++AI+
Sbjct: 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG-LCKNSQSQYEDAIPYFKRAIA 252
Query: 309 IDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
+ + AY + I + G++++A + +K + ++ ++ ++
Sbjct: 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306
Score = 57.1 bits (138), Expect = 6e-09
Identities = 36/322 (11%), Positives = 92/322 (28%), Gaps = 31/322 (9%)
Query: 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHT---KALARLLRATVYIFTSQSTK 116
H L L + + EI+ + T + R + +
Sbjct: 62 HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121
Query: 117 AIEDLTQ---LVEDTSVDPKIKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVD 167
AI+ + + D K K + + + + +A+ E E +
Sbjct: 122 AIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHF---VVHKMIVPG 222
+ + + QYE+A+ + K ++ + + +
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ--S 238
Query: 223 DRER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
E ++++ F + ++ +A L Q+ D A EY ++ + +
Sbjct: 239 QYEDAIPYFKRAIAVFEE-SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI-DKSCMF-----AYETLGTIEVQRGRLEE 332
+ L++ + I+ + ++ + +R ++
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQK 357
Query: 333 AVKCFNKALPLARDEAELSHIY 354
A F K + + +Y
Sbjct: 358 ASAYFLKVEQVRQLIQGGVSLY 379
Score = 33.6 bits (77), Expect = 0.13
Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 13/197 (6%)
Query: 324 EVQRGRLEEAVKCFNKALPLARDEAELSHI---YSLRDAAIAQMKVCERYNIKKKVSPRS 380
++R + +A + E + YSL + M E +K+
Sbjct: 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLML--EYLEPLEKMRIEE 79
Query: 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVV-MDKADYTQKMTSILNSNDYEIIPGDP 439
Q + L I + + ++ + + +D+ +Y + + I D
Sbjct: 80 QPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR 139
Query: 440 TKTIEESEKYGNLEN---ESGQKHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCL 495
IE++E + + Q + + D +A+ E E + + + +
Sbjct: 140 ---IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196
Query: 496 FGQYEEALRNLDKTIAL 512
QYE+A+ + K ++
Sbjct: 197 LKQYEDAISHFQKAYSM 213
Score = 32.9 bits (75), Expect = 0.25
Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 28/300 (9%)
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENAS 280
+ + + E+ ++ ++ +A L ++ + +ED D Y R +
Sbjct: 10 SSIGEKINEWYMYI-RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEY 68
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-AYETLGTIEVQRGRLEEAVKCFNK 339
L M + + D +++ +K + + G E+ + A+K F K
Sbjct: 69 LEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKK 128
Query: 340 ALPLAR---DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRE 396
A D E + + K+ E Y K+ + A + +E
Sbjct: 129 AESKLIFVKDRIEKAEFFF---------KMSESYYYMKQTYFSMDYARQ----AYEIYKE 175
Query: 397 NNDIIIRPAD----KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNL 452
+ IR +D Y ++ + P G
Sbjct: 176 HEAYNIRLLQCHSLFAT--NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC 233
Query: 453 ENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+N Q A + K + E + P++ +Y+ QI+ G+ ++A K +A
Sbjct: 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
Score = 31.3 bits (71), Expect = 0.84
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 455 ESGQKHAASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNLDKTIAL 512
E + + ++D+ + + + Y+ RG +Y A++ K +
Sbjct: 73 EKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132
Query: 513 NPNFH 517
Sbjct: 133 LIFVK 137
Score = 29.8 bits (67), Expect = 2.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 472 LDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
AE + + Y G QYE+A+ + IA+
Sbjct: 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254
Score = 28.2 bits (63), Expect = 6.4
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 449 YGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
+L + A F E++ + ++ D + Y +++A K
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFL----ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 509 TIALN 513
+
Sbjct: 365 VEQVR 369
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 62.7 bits (153), Expect = 4e-12
Identities = 21/114 (18%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
+ A + R+I +P A Y +RA+ L + ++A+ +A+ +D +
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALELDGQSVK 78
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369
A+ LG +++ +EA+ +A LA+++ + D + +++ ++
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-----NFGDDIPSALRIAKK 127
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
+AI +P + V + RA+ +L +A AD A ++D ++
Sbjct: 33 GRAIT----------RNPLVAV-YYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAH 80
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ GQ Y+EA+ NL + +L
Sbjct: 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+A AD A ++D +++ GQ Y+EA+ NL + +L
Sbjct: 58 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
Score = 38.4 bits (90), Expect = 0.001
Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 40/142 (28%)
Query: 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
+ +A A A +P VA Y R Y Q E+AL + + + L+
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----- 76
Query: 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
V+A Q ++ E +D A
Sbjct: 77 -----------------------------------VKAHFFLGQCQLEMESYDEAIANLQ 101
Query: 270 RSIRVDPENASLYVHRAMLMLQ 291
R+ + E + L+
Sbjct: 102 RAYSLAKEQRLNFGDDIPSALR 123
Score = 35.4 bits (82), Expect = 0.015
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
+ +A A A +P VA Y R Y Q E+AL + + + L+
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 7e-12
Identities = 68/432 (15%), Positives = 116/432 (26%), Gaps = 164/432 (37%)
Query: 14 ISKRSFFKPS---KQFIKTYLKSFPNDPILQPDGLSNGVELT----------NGDTNESH 60
+ SFF S +QF K + P + D + EL +
Sbjct: 22 VPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 61 ELDLLSKAKRAFEHEDYL------TAIRHCTEEIESTSSNHTKAL-----AR-------- 101
+L+ FE+ YL +E ++T + + AR
Sbjct: 80 FDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 102 ------LLR------ATVY-IFTSQSTKAIED-LTQLVE--DTSVDPKIKVNAHIKRAVV 145
L R A + IF Q +D +L + T + V IK +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGN--TDDYFEELRDLYQTY---HVLVGDLIKFSAE 193
Query: 146 HL----HAASDFTKAFAD-------LDEAEKVDPNVADSY-------------YQRGQIY 181
L D K F L+ P+ Y Q
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNT-PD--KDYLLSIPISCPLIGVIQ----- 245
Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD-RERVEQSLKEFRNFVDT 240
Y + L T PG+ R ++ +
Sbjct: 246 --LAHYVVTAKLLGFT-----------------------PGELRSYLKGAT--------G 272
Query: 241 HS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH-------RAMLMLQA 292
HS +V A A+ D E +F + + R +A
Sbjct: 273 HSQGLVTA-VAIAET-------DSWESFF--------VSVRKAITVLFFIGVRC---YEA 313
Query: 293 RGNVDEAIKLIEKAISIDK---SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
N ++E ++ ++ S M L + + ++++ V N LP +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQDYVNKTNSHLPAGK---- 364
Query: 350 LSHIY-SLRDAA 360
+ SL + A
Sbjct: 365 --QVEISLVNGA 374
Score = 43.1 bits (101), Expect = 3e-04
Identities = 49/337 (14%), Positives = 89/337 (26%), Gaps = 150/337 (44%)
Query: 146 HLHAASDFTKAFADL-DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN- 203
L+ S A D+ + A D++++ Y ++ ++ NP
Sbjct: 1634 DLYKTSK---AAQDVWNRA--------DNHFKD--------TYGFSILDIVIN---NPVN 1671
Query: 204 ----FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259
F + +R I RE + F VD ++ +F ++
Sbjct: 1672 LTIHFGGEKGKR-------I----RENYSAMI--FETIVDGK---LKTEKIFKEINEHST 1715
Query: 260 D--FDGAEEYFNRSIRVDPEN---ASLYVHRAML-MLQARGNVDEAIKLIEKAISIDKSC 313
F + + + A + +A L+++G I
Sbjct: 1716 SYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGL-------------IPADA 1757
Query: 314 MFA------Y-------ETLG---TIEV--QRGRLEEAVKCFNKALPLARDEAELSH--I 353
FA Y + + +EV RG A+P RDE S+ +
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT------MQVAVP--RDELGRSNYGM 1809
Query: 354 YSLRDAAIAQM-------KVCER-------------YNIKKKVSPRSQNITKNEKLAIKQ 393
++ +A V ER YN Q
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN-----VENQQ------------ 1852
Query: 394 LRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430
+ G +D T++LN
Sbjct: 1853 ------YVA-----AGDLRALDTV------TNVLNFI 1872
Score = 39.3 bits (91), Expect = 0.004
Identities = 37/313 (11%), Positives = 77/313 (24%), Gaps = 110/313 (35%)
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIA 362
+E + + + F L + + FNK LP + ++ D
Sbjct: 16 LEHVLLVPTASFFIASQL--------Q-----EQFNKILPEPTEG------FAADDEPTT 56
Query: 363 QMKVCERY--NIKKKVSPRSQNITKNE-KLAIKQLRE----NNDI--IIRPADKGGKTVV 413
++ ++ + V P L + + NDI + + T +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 414 MDKAD----Y-----------TQKMTSIL----NSNDYEIIP-----GDPTKTIEE---- 445
+ + Y +K S L + +++ G+ EE
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRG--------------- 490
+ Y D K A+ A+ + +G
Sbjct: 177 YQTY---------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 491 QIY-----------CL--FGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST------L 531
+ Y + Y + L P + + +
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLG----FTP----GELRSYLKGATGHSQGLVT 279
Query: 532 AELMAFSD---EF 541
A +A +D F
Sbjct: 280 AVAIAETDSWESF 292
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 62.1 bits (151), Expect = 1e-11
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
++++ A + + +++ + P N +RA + G ++A + E A +D A+
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAW 82
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPL 343
LG + A + + K +
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEA 108
Score = 47.4 bits (113), Expect = 2e-06
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
T+A+ + P + RA + A+ KA D + A VDP + ++
Sbjct: 35 TQALS----------IAPANPI-YLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAW 82
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
+ G Y+ A +K I N +R
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
Score = 45.9 bits (109), Expect = 5e-06
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 42/173 (24%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
A +++KA +A + P R Y GQ+E+A + + ++P +
Sbjct: 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---- 78
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
+A + D D+ GA+E +
Sbjct: 79 ------------------------------------SKAWSRLGLARFDMADYKGAKEAY 102
Query: 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
+ I + S + R + + + ++EA + E A G
Sbjct: 103 EKGIEAEGNGGSDAMKRGLETTKRK--IEEANRGAEPPADDVDDAAGASRGAG 153
Score = 45.9 bits (109), Expect = 5e-06
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQ 123
S+ A ++Y AI T+ + +N L RA Y + Q KA ED
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPI-----YLSNRAAAYSASGQHEKAAEDAEL 70
Query: 124 LVEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG 178
VDPK K A + + +D+ A ++ + + N +RG
Sbjct: 71 ATV---VDPKYSK--AWSRLGLAR-FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120
Score = 45.5 bits (108), Expect = 6e-06
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
KA D + A VDP + ++ + G Y+ A +K I N +R
Sbjct: 60 QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119
Query: 524 HF 525
Sbjct: 120 GL 121
Score = 45.1 bits (107), Expect = 9e-06
Identities = 14/76 (18%), Positives = 33/76 (43%)
Query: 441 KTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 500
+++ + + L++E A +++KA +A + P R Y GQ+E
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 501 EALRNLDKTIALNPNF 516
+A + + ++P +
Sbjct: 63 KAAEDAELATVVDPKY 78
Score = 42.8 bits (101), Expect = 5e-05
Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 42/183 (22%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
+D G +Y +A+ + +++ P + + R
Sbjct: 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR--------------- 51
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
A + A E + VDP+ + +
Sbjct: 52 -------------------------AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
+ + A + EK I + + G +E + ++EEA + D
Sbjct: 87 LA-RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEANRGAEPPADDVDD 144
Query: 347 EAE 349
A
Sbjct: 145 AAG 147
Score = 29.7 bits (67), Expect = 1.6
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+D G +Y +A+ + +++ P + + R
Sbjct: 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR 51
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 65.2 bits (159), Expect = 1e-11
Identities = 44/317 (13%), Positives = 83/317 (26%), Gaps = 30/317 (9%)
Query: 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDL 121
LD L K + E + + K + R + +AI
Sbjct: 66 LDYLEPGKTYGNRPTVTELLET-IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYY 124
Query: 122 TQ---LVEDTSVDPKIKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVDPNVAD 172
+ + S D K H K A + H + +A
Sbjct: 125 REAEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183
Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP--NFHVARAQRHF---VVHKMIVPGDRER- 226
S + Y F Y++AL +L+ + L A + GD +
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMA 241
Query: 227 ---VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
+++ K R + + + L A ++ + + +
Sbjct: 242 VEHFQKAAKVSRE--KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMF------AYETLGTIEVQRGRLEEAVKCF 337
L LQA + I +S + + + E+A +
Sbjct: 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFY 359
Query: 338 NKALPLARDEAELSHIY 354
K L D + +Y
Sbjct: 360 RKVLKAQEDILKGECLY 376
Score = 64.8 bits (158), Expect = 2e-11
Identities = 28/233 (12%), Positives = 74/233 (31%), Gaps = 29/233 (12%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNLDKTIALNPNF-- 204
T+ ++ +K + Y RG +Y EA+ + P
Sbjct: 77 NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD 136
Query: 205 HVARAQRHF---VVHKMIVPGDRER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257
+ +A+ HF + + + Q+L ++N +++ + A D
Sbjct: 137 DIEKAEFHFKVAEAYYHM--KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLML--------QARGNVDEAIKLIEKAISI 309
+ +D A + ++ + + + R + + G+ A++ +KA +
Sbjct: 195 FKHYDKALPHLEAALELAMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251
Query: 310 DKSCMF-----AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
+ + L + G+ ++A + + L + +
Sbjct: 252 SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304
Score = 48.7 bits (116), Expect = 2e-06
Identities = 39/378 (10%), Positives = 100/378 (26%), Gaps = 86/378 (22%)
Query: 165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
+ D ++ Y + L Y E + +R
Sbjct: 46 EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYG---------------------------NR 78
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRV------DP 276
V + L+ + +++ +LF DQ+++ A Y+ + + D
Sbjct: 79 PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDI 138
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI-------DKSCMFAYETLGTIEVQRGR 329
E A + A ++ I +A+ I + + +
Sbjct: 139 EKAEFHFKVAEA-YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197
Query: 330 LEEAVKCFNKALPLAR---DEAELSHIYS----------LRDAAIAQMKVCERYNIKKKV 376
++A+ AL LA ++ ++ A+ + + + ++
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSREK 255
Query: 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA-DYTQKMTSILNSNDYEII 435
P + K G+T KA + ++ + + ++
Sbjct: 256 VPDLLPKVLFG-------------LSWTLCKAGQT---QKAFQFIEEGLDHITARSHK-- 297
Query: 436 PGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 495
E + L+ + + E + + + ++
Sbjct: 298 --------FYKELFLFLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFES 348
Query: 496 FGQYEEALRNLDKTIALN 513
+E+A K +
Sbjct: 349 SCHFEQAAAFYRKVLKAQ 366
Score = 33.6 bits (77), Expect = 0.14
Identities = 47/282 (16%), Positives = 83/282 (29%), Gaps = 30/282 (10%)
Query: 243 NVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298
+V +A L A+V D +ED D Y R L R V E
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFR---HQLMLDYLEPGKTYGNRPTVTE 83
Query: 299 AIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
++ IE ++ G E + EA+ + +A +
Sbjct: 84 LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP------FVSDD 137
Query: 357 RDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDK 416
+ A KV E Y K+ +I + + + I G D
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG--NYDDF 195
Query: 417 ADYTQKMTSILNS-NDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEA 475
Y + + + + I D + N+ N + D A +A
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRF----IAISLLNIANSYDRSG---DDQMAVEHFQKA 248
Query: 476 -----EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
EKV + + C GQ ++A + +++ +
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 30.2 bits (68), Expect = 2.0
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 449 YGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY--QRGQIYCLFGQYEEALRNL 506
+ T+ ++ +K + Y RG +Y EA+
Sbjct: 65 MLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYY 124
Query: 507 DKTIALNPNFH 517
+ P
Sbjct: 125 REAEKELPFVS 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 60.0 bits (146), Expect = 3e-11
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-- 315
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI + +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDY 75
Query: 316 -----AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357
AY +G + + ++A+ +NK+L R L
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122
Score = 47.7 bits (114), Expect = 7e-07
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 33/135 (24%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
+ DF A D+A+++DP + +Y G Y + +K I +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
+ + +A +E + A
Sbjct: 74 D---------------------------------YRQIAKAYARIGNSYFKEEKYKDAIH 100
Query: 267 YFNRSIRVDPENASL 281
++N+S+ L
Sbjct: 101 FYNKSLAEHRTPDVL 115
Score = 42.3 bits (100), Expect = 5e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503
+++ K L N+ + DF A D+A+++DP + +Y G Y +
Sbjct: 2 KQALKEKELGND---AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR 58
Query: 504 RNLDKTIALNPNFHVARAQR 523
+K I + Q
Sbjct: 59 ELCEKAIEVGRENREDYRQI 78
Score = 41.5 bits (98), Expect = 9e-05
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN----- 169
KA E +DP +A V+ D+ K ++A +V
Sbjct: 28 DKAKE----------LDPTNMT-YITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDY 75
Query: 170 --VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+A +Y + G Y +Y++A+ +K++A + V + +
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
Score = 39.6 bits (93), Expect = 4e-04
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
KA E + +A +Y + G Y +Y++A+ +K++A + V +
Sbjct: 57 CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116
Query: 521 AQR 523
+
Sbjct: 117 KCQ 119
Score = 35.4 bits (82), Expect = 0.013
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE-- 349
+ + D A+K +KA +D + M + ++G + + KA+ + R+ E
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 350 --LSHIYSLRDAAIAQMKVCER----YNIKKKVSPRSQNITKNEKLAIKQLRE 396
++ Y+ + + + + YN K R+ ++ K + A K L+E
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYN-KSLAEHRTPDVLKKCQQAEKILKE 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 59.5 bits (145), Expect = 4e-11
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
+ D+ A ++N +++ DPENA LY +RA L A+ + I +D +
Sbjct: 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK 82
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
Y V +A + + AL + E
Sbjct: 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Score = 43.0 bits (102), Expect = 3e-05
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
RA +F +A D D ++D Y ++ ++ +A R + + ++
Sbjct: 53 RAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
Query: 202 PN 203
P+
Sbjct: 112 PS 113
Score = 41.8 bits (99), Expect = 7e-05
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+F +A D D ++D Y ++ ++ +A R + + ++P+
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
Score = 40.7 bits (96), Expect = 1e-04
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQL 124
K F+ DY TA+RH E ++ N L RA + +A++D
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAI-----LYSNRAACLTKLMEFQRALDDCDTC 73
Query: 125 VEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
+ +D K IK +I++A A +++KA ++A +VDP+ +
Sbjct: 74 IR---LDSKFIK--GYIRKAACL-VAMREWSKAQRAYEDALQVDPSNEE 116
Score = 36.8 bits (86), Expect = 0.003
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 40/133 (30%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
D+ A +EA K DP A Y R +++ AL + D I L+ F
Sbjct: 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---- 80
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
++ A LV ++ A+ +
Sbjct: 81 ------------------------------------IKGYIRKAACLVAMREWSKAQRAY 104
Query: 269 NRSIRVDPENASL 281
+++VDP N
Sbjct: 105 EDALQVDPSNEEA 117
Score = 36.8 bits (86), Expect = 0.004
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 41/159 (25%)
Query: 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221
++P +A +G Y G Y A+R+ ++ + +P + + R
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNR---------- 53
Query: 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
A L +F A + + IR+D +
Sbjct: 54 ------------------------------AACLTKLMEFQRALDDCDTCIRLDSKFIKG 83
Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL 320
Y+ +A L A +A + E A+ +D S A E +
Sbjct: 84 YIRKAAC-LVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
Score = 36.0 bits (84), Expect = 0.007
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
D+ A +EA K DP A Y R +++ AL + D I L+ F
Sbjct: 25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80
Score = 27.2 bits (61), Expect = 8.2
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 474 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---RAQ 522
++P +A +G Y G Y A+R+ ++ + +P + RA
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAA 55
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 58.8 bits (143), Expect = 5e-11
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334
DPE+ A N A+ L E+ + D + Y LG + + R ++A+
Sbjct: 3 DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 335 KCFNKALPLARDEAE 349
+ + + +AR+E
Sbjct: 62 DTYAQGIEVAREEGT 76
Score = 51.1 bits (123), Expect = 2e-08
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
AQ + ++ A F + DP+ Y H L + D+AI + I + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDAIDTYAQGIEVAR 72
Score = 50.7 bits (122), Expect = 3e-08
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 40/121 (33%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
DP + Y Q + AL ++ + +P++
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---------------------- 40
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286
V ++ + D A + + + I V E +
Sbjct: 41 ------------------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82
Query: 287 M 287
+
Sbjct: 83 L 83
Score = 49.6 bits (119), Expect = 8e-08
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
+ ++A A +E + DP+ +YY G++Y + ++A+ + I +
Sbjct: 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76
Query: 207 ARAQR 211
+
Sbjct: 77 QKDLS 81
Score = 48.4 bits (116), Expect = 2e-07
Identities = 11/60 (18%), Positives = 27/60 (45%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
+ ++A A +E + DP+ +YY G++Y + ++A+ + I + +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Score = 43.0 bits (102), Expect = 2e-05
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
DP + Y Q + AL ++ + +P++
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT 43
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 59.6 bits (145), Expect = 5e-11
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
+ D+ A +++ +I+ +P++A LY +RA L A+K E+ I ++ +
Sbjct: 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPT 82
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
+ Y +A+ + KAL L E + + +AQ
Sbjct: 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD--GYQRCMMAQ 131
Score = 46.5 bits (111), Expect = 2e-06
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220
++P++A +G G Y +A+++ + I NP + R
Sbjct: 6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR--------- 56
Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
A +F A + I+++P
Sbjct: 57 -------------------------------AACYTKLLEFQLALKDCEECIQLEPTFIK 85
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
Y +A L+A + +A+ + +KA+ +D SC A + + +
Sbjct: 86 GYTRKAAA-LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
Score = 44.9 bits (107), Expect = 7e-06
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
RA + +F A D +E +++P Y ++ Y +A+ K + L+
Sbjct: 56 RAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Query: 202 PN 203
+
Sbjct: 115 SS 116
Score = 43.8 bits (104), Expect = 2e-05
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+F A D +E +++P Y ++ Y +A+ K + L+ +
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
Score = 42.2 bits (100), Expect = 6e-05
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQL 124
K F+ DY A++H TE I+ + A+L RA Y + A++D +
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAACYTKLLEFQLALKDCEEC 76
Query: 125 VEDTSVDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183
++ ++P IK + ++A A D+TKA +A +D + + G C+
Sbjct: 77 IQ---LEPTFIK--GYTRKAAALE-AMKDYTKAMDVYQKALDLDSSCKE--AADGYQRCM 128
Query: 184 FGQY 187
QY
Sbjct: 129 MAQY 132
Score = 41.8 bits (99), Expect = 8e-05
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 40/134 (29%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
D+ +A EA K +P A Y R Y +++ AL++ ++ I L P F
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 83
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
++ T A L +D+ A + +
Sbjct: 84 ------------------------------------IKGYTRKAAALEAMKDYTKAMDVY 107
Query: 269 NRSIRVDPENASLY 282
+++ +D
Sbjct: 108 QKALDLDSSCKEAA 121
Score = 41.1 bits (97), Expect = 1e-04
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 427 LNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSY 486
+ + + +P + K GN + D+ +A EA K +P A Y
Sbjct: 1 MGHHHHHHSHMNPDLALMVKNK-GN------ECFQKGDYPQAMKHYTEAIKRNPKDAKLY 53
Query: 487 YQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
R Y +++ AL++ ++ I L P F
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Score = 31.4 bits (72), Expect = 0.24
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 473 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA---RAQ 522
++P++A +G G Y +A+++ + I NP RA
Sbjct: 6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA 58
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 59.2 bits (144), Expect = 5e-11
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
+ D+ A + + I+ PE+A Y +RA L + EAI KAI D + +
Sbjct: 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEKDPNFVR 73
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369
AY T ++ A++ + A +AE+++ S R+ K ++
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTK---DAEVNNGSSAREIDQLYYKASQQ 124
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
RA F +A AD ++A + DPN +Y ++ +Y AL LD +
Sbjct: 44 RAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102
Query: 202 PNFHVARAQR 211
+ + R
Sbjct: 103 AEVNNGSSAR 112
Score = 44.6 bits (106), Expect = 7e-06
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
F +A AD ++A + DPN +Y ++ +Y AL LD + + + R
Sbjct: 53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
Score = 39.2 bits (92), Expect = 6e-04
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 40/145 (27%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
SD+ A E K P A Y R + EA+ + +K I +PNF A
Sbjct: 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
++ A + +++ A E
Sbjct: 76 IRK----------------------------------------ATAQIAVKEYASALETL 95
Query: 269 NRSIRVDPENASLYVHRAMLMLQAR 293
+ + D E + R + L +
Sbjct: 96 DAARTKDAEVNNGSSAREIDQLYYK 120
Score = 38.8 bits (91), Expect = 6e-04
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
SD+ A E K P A Y R + EA+ + +K I +PNF
Sbjct: 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Score = 36.5 bits (85), Expect = 0.004
Identities = 21/162 (12%), Positives = 41/162 (25%), Gaps = 41/162 (25%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
A+ G+ Y + A++ + I P + R
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR------------------- 44
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
A L F A N++I DP Y+ +A
Sbjct: 45 ---------------------AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-Q 82
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
A A++ ++ A + D ++ ++
Sbjct: 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 60.5 bits (147), Expect = 5e-11
Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
+D++ A ++++++I ++P NA Y +R++ L A+ +AI +DK +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIK 82
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375
Y + G+ A++ + + + + + A + + C + +K+K
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKD----------AKMKYQECNKI-VKQK 131
Query: 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKG 408
R+ ++++ + L + + I G
Sbjct: 132 AFERAIAGDEHKRSVVDSL-DIESMTIEDEYSG 163
Score = 44.7 bits (106), Expect = 1e-05
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
R++ +L + A D A ++D YY+R G++ ALR+ + + +
Sbjct: 53 RSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111
Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV---DTHSNVVEA 247
P+ A+ + +K++ ER + R+ V D S +E
Sbjct: 112 PHDKDAKMKYQ-ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 159
Score = 42.0 bits (99), Expect = 1e-04
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ A D A ++D YY+R G++ ALR+ + + + P+
Sbjct: 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
Score = 38.5 bits (90), Expect = 0.002
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 56/177 (31%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
A D+ A +A +++P+ A Y R Y Y AL + + I L+ +
Sbjct: 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 84
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
+R A + F A +
Sbjct: 85 YRR----------------------------------------AASNMALGKFRAALRDY 104
Query: 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI-----EKAISIDKSCMFAYETL 320
++V P + A+ E K++ E+AI+ D+ ++L
Sbjct: 105 ETVVKVKPHDK-----------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A D+ A +A +++P+ A Y R Y Y AL + + I L+ +
Sbjct: 25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80
Score = 36.6 bits (85), Expect = 0.006
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
+ + E + A R+I +D + Y RA A G A++ E + +
Sbjct: 54 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS-NMALGKFRAALRDYETVVKVKP 112
Query: 312 SCMFAYETLGTIE--VQRGRLEEAVK 335
A V++ E A+
Sbjct: 113 HDKDAKMKYQECNKIVKQKAFERAIA 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 59.1 bits (144), Expect = 5e-11
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
+ D A + ++ +I++DP N LY +R+ G+ +A + K + +
Sbjct: 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK 73
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
Y R EEA + + + L + +L
Sbjct: 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
Score = 44.1 bits (105), Expect = 8e-06
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201
R+ + D+ KA+ D + + P+ Y ++ ++EEA R ++ +
Sbjct: 44 RSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102
Query: 202 PN 203
N
Sbjct: 103 AN 104
Score = 42.6 bits (101), Expect = 3e-05
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ KA+ D + + P+ Y ++ ++EEA R ++ + N
Sbjct: 53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
Score = 40.6 bits (96), Expect = 1e-04
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 443 IEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 502
+E+ + N+ + + A EA K+DP+ Y R Y G Y++A
Sbjct: 1 MEQVNELKEKGNK---ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57
Query: 503 LRNLDKTIALNPNF 516
+ KT+ L P++
Sbjct: 58 YEDGCKTVDLKPDW 71
Score = 39.9 bits (94), Expect = 3e-04
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 40/133 (30%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
+ + A EA K+DP+ Y R Y G Y++A + KT+ L P++
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---- 71
Query: 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268
+ + A L F+ A+ +
Sbjct: 72 ------------------------------------GKGYSRKAAALEFLNRFEEAKRTY 95
Query: 269 NRSIRVDPENASL 281
++ + N L
Sbjct: 96 EEGLKHEANNPQL 108
Score = 36.0 bits (84), Expect = 0.006
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 41/156 (26%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
+ ++G G ++AL+ + I L+P+ HV + R
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR------------------- 44
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
+ + D+ A E +++ + P+ Y +A L
Sbjct: 45 ---------------------SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA-L 82
Query: 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326
+ +EA + E+ + + + E L +E +
Sbjct: 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 58.2 bits (141), Expect = 1e-10
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
++ + A F + +PE + L AI + A +D
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG-LTQAENEKDGLAIIALNHARMLDP 82
Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
+ + L A+ L
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWL 112
Score = 51.3 bits (123), Expect = 3e-08
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 275 DPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331
+ N +Y M L + N+ EA E + A+ +LG + + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 332 EAVKCFNKALPLARDEAE 349
A+ N A L +
Sbjct: 69 LAIIALNHARMLDPKDIA 86
Score = 49.8 bits (119), Expect = 1e-07
Identities = 14/140 (10%), Positives = 31/140 (22%), Gaps = 41/140 (29%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
++ + G EA + P
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------------------- 50
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
EA + E A N + +DP++ +++ A+
Sbjct: 51 --------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS-H 95
Query: 291 QARGNVDEAIKLIEKAISID 310
N + A+ + +
Sbjct: 96 TNEHNANAALASLRAWLLSQ 115
Score = 49.0 bits (117), Expect = 2e-07
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
A + A L+ A +DP + + AL +L
Sbjct: 51 EEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109
Query: 196 KTIALNPNFH 205
+ P +
Sbjct: 110 AWLLSQPQYE 119
Score = 47.8 bits (114), Expect = 4e-07
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 457 GQKHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
G A ++ A L+ A +DP + + AL +L + P
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Query: 516 FH 517
+
Sbjct: 118 YE 119
Score = 47.4 bits (113), Expect = 7e-07
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487
N+ DY +P E + G + + +A + + +P +++
Sbjct: 2 NNTDYPFEANNPYMYHENPMEEGLSMLKLA------NLAEAALAFEAVCQKEPEREEAWR 55
Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
G + A+ L+ L+P
Sbjct: 56 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88
Score = 46.3 bits (110), Expect = 2e-06
Identities = 13/150 (8%), Positives = 37/150 (24%), Gaps = 41/150 (27%)
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
P + ++ + + ++ +A + + +P +++ G + A+
Sbjct: 13 PYMYHENPMEEGLS-MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 192 RNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
L+ L+P A
Sbjct: 72 IALNHARMLDPKDIAVHAAL---------------------------------------- 91
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASL 281
A ++ + + A + P+ L
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQPQYEQL 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 62.3 bits (152), Expect = 1e-10
Identities = 25/215 (11%), Positives = 57/215 (26%), Gaps = 38/215 (17%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF---VVHKMIVPGD 223
++ G+ C G + I + + + + GD
Sbjct: 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--GD 101
Query: 224 RER----VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD---- 275
+ + L ++ D ++ L FD A R + +
Sbjct: 102 YNKAMQYHKHDLTLAKSMND-RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160
Query: 276 --PENASLY-----VHRAM-----------LMLQARGNVDEAIKLIEKAISI-----DKS 312
V+ A + + A++ ++ + + D+
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220
Query: 313 CM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A LG G + A++ + L +AR+
Sbjct: 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255
Score = 60.8 bits (148), Expect = 4e-10
Identities = 38/296 (12%), Positives = 86/296 (29%), Gaps = 48/296 (16%)
Query: 76 DYLTAIRHCTEEIESTSSNHTKALARLLR--ATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133
D + I++ + + + L+ + Y + KA++ +
Sbjct: 63 DCRAGVAFFQAAIQAGTEDL-RTLSAIYSQLGNAYFYLGDYNKAMQYHKH-----DLTLA 116
Query: 134 IKVNAHIKRAVVH------LHAASDFTKAFADLDEA----EKVD--PNVADSYYQRGQIY 181
+N + A L F +A + ++ + + Y G +Y
Sbjct: 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH 241
G++ + RA + +++LK R+ D
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEAL--TRAVEFY--------------QENLKLMRDLGD-R 219
Query: 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-----MLQARGNV 296
AC DF A E+ +R+ E R G
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279
Query: 297 DEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
++A + ++ +++ + +LG A++ N+ L +A++
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335
Score = 60.0 bits (146), Expect = 7e-10
Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 62/324 (19%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYV 283
+ + ++ D S++ L + L + D +F +I+ E+ +++Y
Sbjct: 32 DGNSQQGSG-SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCF 337
G+ ++A++ + +++ KS + LG GR +EA C
Sbjct: 91 QLGNA-YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC 149
Query: 338 NKALPLAR------DEAE-LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLA 390
+ L LAR E L ++ + K ++ ++ ++ + A
Sbjct: 150 ERHLTLARQLGDRLSEGRALYNL-----GNVYHAK--GKHLGQRNPGKFGDDVKEALTRA 202
Query: 391 IKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS--NDYEIIPGDPTKTIEESEK 448
++ +EN ++ D+G + N Y ++ GD IE ++
Sbjct: 203 VEFYQENLKLMRDLGDRGA-------------QGRACGNLGNTYYLL-GDFQAAIEHHQE 248
Query: 449 YGNLENESGQK--HAAS------------DFTKAFADLDEA----EKV--DPNVADSYYQ 488
+ E G + + F A ++ A S Y
Sbjct: 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308
Query: 489 RGQIYCLFGQYEEALRNLDKTIAL 512
G Y L ++ A+ ++ +A+
Sbjct: 309 LGNTYTLLHEFNTAIEYHNRHLAI 332
Score = 57.3 bits (139), Expect = 5e-09
Identities = 40/303 (13%), Positives = 88/303 (29%), Gaps = 62/303 (20%)
Query: 76 DYLTAIRHCTEEIE---STSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132
+ + + L L + ++
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ------ 76
Query: 133 KIKVNAHIKRAVVH------LHAASDFTKAFA----DLDEAEKVD--PNVADSYYQRGQI 180
+ ++ D+ KA DL A+ ++ A S G
Sbjct: 77 -AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135
Query: 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT 240
+ G+++EA +RH + + + GDR ++L N +
Sbjct: 136 LKVMGRFDEAAICC---------------ERHLTLARQL--GDRLSEGRAL---YNLGNV 175
Query: 241 HSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--------LM 289
+ + +E A E++ ++++ + L A
Sbjct: 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNT 232
Query: 290 LQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPL 343
G+ AI+ ++ + I D++ A LG + G+ E+A + + + L L
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
Query: 344 ARD 346
A +
Sbjct: 293 AVE 295
Score = 50.4 bits (121), Expect = 9e-07
Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 27/161 (16%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIA----LNPNFHVARAQRHF-VVHKMIVPG 222
+ G Y L G ++ A+ + + + RA + H + G
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL--G 277
Query: 223 DRER----VEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDP 276
E +++L + EA + + +F+ A EY NR + +
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREV---EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334
Query: 277 ENASLYVHRAM--------LMLQARGNVDEAIKLIEKAISI 309
E L A G + A+K E+ + +
Sbjct: 335 E---LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 34.2 bits (79), Expect = 0.093
Identities = 13/72 (18%), Positives = 16/72 (22%), Gaps = 7/72 (9%)
Query: 291 QARGNVDEAIKLIEKAISI------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344
G+ + S G G V F A+
Sbjct: 19 LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78
Query: 345 R-DEAELSHIYS 355
D LS IYS
Sbjct: 79 TEDLRTLSAIYS 90
Score = 33.4 bits (77), Expect = 0.17
Identities = 4/44 (9%), Positives = 9/44 (20%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
++ G+ C G + I +
Sbjct: 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSA 87
Score = 29.6 bits (67), Expect = 2.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A + + G + G +E AL+ ++ + L
Sbjct: 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 28.4 bits (64), Expect = 5.9
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
A S G + G+++EA ++ + L
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 60.0 bits (146), Expect = 1e-10
Identities = 27/209 (12%), Positives = 61/209 (29%), Gaps = 46/209 (22%)
Query: 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209
A D+ A + + + G +Y +++EA +
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASF--------------- 49
Query: 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269
+ ++ + D H+ A V ++D A F
Sbjct: 50 ------------------QALQQQAQKSGD-HTAEHRALHQVGMVERMAGNWDAARRCFL 90
Query: 270 RSIRVDPENASLYVHRAM------LMLQARGNVDEAIKLIEKAISI-----DKSCM-FAY 317
+ + + + G++ A + EK++ D+ + A+
Sbjct: 91 EERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARD 346
LG + Q L EA + + +A + +
Sbjct: 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE 179
Score = 34.6 bits (80), Expect = 0.050
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 6/55 (10%)
Query: 298 EAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
EA A LG + R +EA F A+
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK 58
Score = 32.2 bits (74), Expect = 0.27
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 450 GNLENESGQKHAASD-FTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNL 506
+ G A + K+ L A++ D +A ++ G + EA ++
Sbjct: 114 ATVALHFGDLAGARQEYEKS---LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
Query: 507 DKTIAL 512
+ +
Sbjct: 171 LRARDI 176
Score = 32.2 bits (74), Expect = 0.30
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 450 GNLENESGQKHAASD-FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
G +E +G AA F + L + + + Y+ + FG A + +K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 509 TIAL 512
++
Sbjct: 133 SLVY 136
Score = 31.9 bits (73), Expect = 0.32
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A D+ A + + + G +Y +++EA +
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55
Score = 31.1 bits (71), Expect = 0.73
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 450 GNLENESGQKHAASD-FTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNL 506
G + + A F +A+K + +Q G + + G ++ A R
Sbjct: 33 GYVYAFMDRFDEARASFQAL---QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCF 89
Query: 507 DKTIAL 512
+ L
Sbjct: 90 LEEREL 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 71/594 (11%), Positives = 178/594 (29%), Gaps = 177/594 (29%)
Query: 12 EEISKRSFF----KPSKQFIKTYLKSFPNDP-------ILQPDGLSNGVE-LTNGDTNES 59
EE+ ++ F + + +F+ + +K+ P I Q D L N + + +
Sbjct: 76 EEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 60 HELDLLSKAKRAFEHEDYLT------------AIRHC-TEEIESTSSNH----------- 95
L +A + A+ C + +++
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTK 155
+ + +L+ +Y + T D S + K+++++ I+ + L + +
Sbjct: 195 PETVLEMLQKLLYQIDP-------NWTSR-SDHSSNIKLRIHS-IQAELRRLLKSKPYEN 245
Query: 156 AFADLDEAEKV-DPNVADSYYQRGQIYCLFGQYEEALRNL----DKTIALNPNFHVARAQ 210
L V + +++ + C + L K + +F A
Sbjct: 246 CLLVLLN---VQNAKAWNAF----NLSC---------KILLTTRFKQVT---DFLSAATT 286
Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV--EACT-------LFAQVLVD---- 257
H + + + + ++D + E T + A+ + D
Sbjct: 287 THISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 258 -----QEDFDGAEEYFNRSIRV-DP-ENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
+ D S+ V +P E ++ ++ + + +S+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--------PSAHIPTILLSL- 394
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS-HIYSL------RDAAIAQ 363
+ + +V K +L + + E + I S+ +
Sbjct: 395 -----IWFDVIKSDVM----VVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 364 M--KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK------GGKTVVMD 415
+ + + YNI K +++D+I D+ G +
Sbjct: 445 LHRSIVDHYNIPKT-------------------FDSDDLIPPYLDQYFYSHIGHH---LK 482
Query: 416 KADYTQKMTS--------------ILNSNDYEIIPGDPTKTIEESEKYGN--LENESGQK 459
++ ++MT I + + G T+++ + Y +N+
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--- 539
Query: 460 HAASDFTKAFADL-DEAEKVDPNVADSYY----QRGQIYCLFGQYEEALRNLDK 508
+ + + D K++ N+ S Y + + +EEA + + +
Sbjct: 540 ----KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 59.5 bits (143), Expect = 2e-09
Identities = 82/553 (14%), Positives = 169/553 (30%), Gaps = 131/553 (23%)
Query: 74 HEDYLTA-IRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV-EDTSVD 131
H D+ T ++ ++I L+ A V F K ++D+ + + +D
Sbjct: 6 HMDFETGEHQYQYKDI----------LSVFEDAFVDNF---DCKDVQDMPKSILSKEEID 52
Query: 132 PKIKVNAHIKRAV----VHLHAASDFTKAFADLDEAEKVDPN-----VADSYYQRGQIYC 182
I + + L + + F ++E +++ + Q +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
++ + + L N ++ ++V+R Q + ++ Q+L E R
Sbjct: 111 MYIEQRDRLYNDNQVF---AKYNVSRLQPY------------LKLRQALLELRP----AK 151
Query: 243 NVV----EAC---TLFAQVLVD---QEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAM 287
NV+ + V + Q D + N PE L ++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQID 210
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT---I--EVQRGRLEEA--VKCFNKA 340
+R + IKL +I + + + + VQ + A + C K
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KI 268
Query: 341 LPLARD--------EAELSHIYSLRDAAIA-----QMKVCERY-NIKKKVSPRSQNITKN 386
L R A +HI SL ++ + +Y + + + PR +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTT 325
Query: 387 EKLAI----KQLRENNDIIIRPADKGGKTVVMDKADYTQKMT-SILNSNDYE-------I 434
+ + +R+ K V DK + + ++L +Y +
Sbjct: 326 NPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 435 IPGD---PTKTI---------EESEKYGN-LENESGQKHAASDFTKAFADL--DEAEKVD 479
P PT + + N L S + + T + + + K++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 480 PNVA------DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAE 533
A D Y I F + LD+ + H+ + TL
Sbjct: 441 NEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFR 494
Query: 534 LMAFSDEFMIPKI 546
++ F+ KI
Sbjct: 495 MVFLDFRFLEQKI 507
Score = 50.2 bits (119), Expect = 1e-06
Identities = 60/445 (13%), Positives = 122/445 (27%), Gaps = 132/445 (29%)
Query: 151 SDFTKAF---ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
D K+ ++D V+ + + L + EE ++ + L N+
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEE-VLRINYK-- 92
Query: 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267
F++ + + Q R +++ + +FA+ V
Sbjct: 93 -----FLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---------- 132
Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
R+ P + +A+L L+ NV LI+ + K+ + A + + +VQ
Sbjct: 133 -----RLQPYLK---LRQALLELRPAKNV-----LIDGVLGSGKTWV-ALDVCLSYKVQC 178
Query: 328 -----------GRLEEAVKCFNKALPLARD-----EAELSHIYSLRDAAIAQMKVCERYN 371
L + H +++ I ++ R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRL 237
Query: 372 IKKKVSPRSQNITKNEKLAIKQLRENNDI-IIRPADKGGKTVVM--DKADYTQKMTSILN 428
+K K L + L + + K ++ K +T L+
Sbjct: 238 LKSKPYENC--------LLV--LLNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFLS 282
Query: 429 SNDYEIIP-GDPTKTIEESEKYGNLENESGQKHAASDFTKAFADL-DEAEKVDPNVADSY 486
+ I + T+ E L + DL E +P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---------PQDLPREVLTTNP------ 327
Query: 487 YQRGQIYCLFGQYEEALRN---------------LDKTI-----ALNPNFHVARAQRHFV 526
+ + E++R+ L I L P + ++ F
Sbjct: 328 ----RRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFD 376
Query: 527 WTSTLAELMAFSDEFMIPKITYYIL 551
L F IP I ++
Sbjct: 377 ------RLSVFPPSAHIPTILLSLI 395
Score = 29.8 bits (66), Expect = 3.1
Identities = 30/249 (12%), Positives = 65/249 (26%), Gaps = 75/249 (30%)
Query: 10 AKEEISKRSF--FKPSKQFIKTYLKS---FPND---P-----ILQPDGLSNGVELTNGDT 56
I + S +P++ + FP P ++ D + + V +
Sbjct: 354 KLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---VV 408
Query: 57 NESHELDLLSKAKRAFE-----HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT 111
N+ H+ L+ K+ E YL E H + +
Sbjct: 409 NKLHKYSLV--EKQPKESTISIPSIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSD 462
Query: 112 SQSTKAIED-----------LTQLVEDTSVDPKIKVN-----AHIKRAVVHLHAASDFTK 155
++ + E ++ + ++ I+ +A+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 156 AFADLDEAEK-VDPNVADSYYQR-------------GQIYC----------LF----GQY 187
L + + N D Y+R + C L +
Sbjct: 523 TLQQLKFYKPYICDN--DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 188 EEALRNLDK 196
EEA + + +
Sbjct: 581 EEAHKQVQR 589
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 59.2 bits (144), Expect = 1e-09
Identities = 39/321 (12%), Positives = 86/321 (26%), Gaps = 50/321 (15%)
Query: 54 GDTNESHE-LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLR--ATVYIF 110
G + L+L + +R + D + ++ + + K L+ + Y +
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFY 59
Query: 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH------LHAASDFTKAFADLDEA- 163
KA+E + + + A L +F +A
Sbjct: 60 LHDYAKALEYHHH-----DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
Query: 164 ---EKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-ARAQRHFVVHK 217
+++ A + Y G +Y G+ D A +
Sbjct: 115 DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY---- 170
Query: 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--- 274
E++L D + A +F A + + +
Sbjct: 171 ----------EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219
Query: 275 ---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEV 325
Y + G + A + +K + + + + +LG
Sbjct: 220 FGDKAAERRAYSNLGNA-YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278
Query: 326 QRGRLEEAVKCFNKALPLARD 346
E+A+ K L +A++
Sbjct: 279 LLQDYEKAIDYHLKHLAIAQE 299
Score = 55.4 bits (134), Expect = 2e-08
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 51/193 (26%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
++ G + L G + +A+ H
Sbjct: 184 AAQGRAFGNLGNTHYLLGNFRDAV-----------IAH---------------------- 210
Query: 228 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVD------PENA 279
EQ L + F D + E + +F+ A EY+ +++ + A
Sbjct: 211 EQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------FAYETLGTIEVQRGRLEEA 333
+ ++AI K ++I + A +LG G ++A
Sbjct: 268 QSCYSLGNT-YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326
Query: 334 VKCFNKALPLARD 346
+ K L ++R+
Sbjct: 327 MHFAEKHLEISRE 339
Score = 46.1 bits (110), Expect = 2e-05
Identities = 27/204 (13%), Positives = 50/204 (24%), Gaps = 54/204 (26%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
+Y G Y G++E A
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYY--------------------------------- 250
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD----PENASL 281
+++L R D + ++C +D++ A +Y + I +
Sbjct: 251 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309
Query: 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-------------FAYETLGTIEVQRG 328
A GN D+A+ EK + I + LG
Sbjct: 310 CWSLGNA-YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368
Query: 329 RLEEAVKCFNKALPLARDEAELSH 352
+ + +L R + H
Sbjct: 369 SIMSENTEIDSSLNGVRPKLGRRH 392
Score = 40.7 bits (96), Expect = 0.001
Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 46/177 (25%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
A S Y G Y L YE+A+
Sbjct: 264 AVEAQSCYSLGNTYTLLQDYEKAIDYH--------------------------------- 290
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENAS 280
+ L + D AC + D A + + + + E +
Sbjct: 291 LKHLAIAQELND-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349
Query: 281 LY----VHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
+ + L ++ I+ +++ + + ++ +E+ + E+
Sbjct: 350 RLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLTPEK 406
Score = 33.0 bits (76), Expect = 0.23
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 436 PGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494
PG + E G +SG + S F A + + ++ Y Q G Y
Sbjct: 2 PGSMEASCLELALEGERLCKSGDCRAGVSFFEAA---VQVGTEDLKTLSAIYSQLGNAYF 58
Query: 495 LFGQYEEALRNLDKTIAL 512
Y +AL + L
Sbjct: 59 YLHDYAKALEYHHHDLTL 76
Score = 32.7 bits (75), Expect = 0.33
Identities = 3/42 (7%), Positives = 9/42 (21%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
G+ C G + + + + +
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLS 47
Score = 31.5 bits (72), Expect = 0.77
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A S Y G Y L YE+A+ K +A+
Sbjct: 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
Score = 30.7 bits (70), Expect = 1.1
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+ + G Y G +++A+ +K + +
Sbjct: 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
Score = 29.6 bits (67), Expect = 3.0
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A + G + G ++EA+ + + +
Sbjct: 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
Score = 29.6 bits (67), Expect = 3.3
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLAR-DEAELSHIYS 355
G + G V F A+ + D LS IYS
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS 51
Score = 29.2 bits (66), Expect = 3.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+Y G Y G++E A KT+ L
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256
Score = 28.8 bits (65), Expect = 5.4
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
++ G + L G + +A+ ++ + +
Sbjct: 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217
Score = 28.8 bits (65), Expect = 5.5
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 524
N++D G Y +D ++ +RH
Sbjct: 351 LNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN---GVRPKLGRRH 392
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 58.4 bits (142), Expect = 2e-09
Identities = 38/294 (12%), Positives = 80/294 (27%), Gaps = 48/294 (16%)
Query: 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAF 157
L L + + V+ + D K + + + D+ KA
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKAL 63
Query: 158 A----DLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH----VA 207
DL A + A + G + G ++EA+ + + ++ + A
Sbjct: 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Query: 208 RAQ-----------RHFVVHKMIVPGDRERV------------EQSLKEFRNFVDTHSNV 244
RA + F G+ E++L D +
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQ 182
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQARGNVDE 298
A +F A + + + Y + G +
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA-YIFLGEFET 241
Query: 299 AIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A + +K + + + + +LG E+A+ K L +A++
Sbjct: 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295
Score = 57.6 bits (140), Expect = 3e-09
Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 51/193 (26%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
++ G + L G + +A+
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAH--------------------------------- 206
Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVD------PENA 279
EQ L + F D + E + +F+ A EY+ +++ + A
Sbjct: 207 EQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------FAYETLGTIEVQRGRLEEA 333
+ ++AI K ++I + A +LG G ++A
Sbjct: 264 QSCYSLGNT-YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322
Query: 334 VKCFNKALPLARD 346
+ K L ++R+
Sbjct: 323 MHFAEKHLEISRE 335
Score = 33.8 bits (78), Expect = 0.12
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 450 GNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 508
G +SG + S F A + + ++ Y Q G Y Y +AL
Sbjct: 12 GERLCKSGDCRAGVSFFEAA---VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 509 TIAL 512
+ L
Sbjct: 69 DLTL 72
Score = 31.4 bits (72), Expect = 0.75
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A S Y G Y L YE+A+ K +A+
Sbjct: 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292
Score = 30.3 bits (69), Expect = 1.5
Identities = 3/40 (7%), Positives = 9/40 (22%)
Query: 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
G+ C G + + + + +
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA 44
Score = 29.9 bits (68), Expect = 2.2
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+ + G Y G +++A+ +K + +
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 29.9 bits (68), Expect = 2.2
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLAR-DEAELSHIYS 355
G + G V F A+ + D LS IYS
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS 47
Score = 29.5 bits (67), Expect = 2.5
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
A + G + G ++EA+ + + ++
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113
Score = 29.5 bits (67), Expect = 2.7
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
++ G + L G + +A+ ++ + +
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212
Score = 28.8 bits (65), Expect = 4.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513
+Y G Y G++E A KT+ L
Sbjct: 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 54.8 bits (133), Expect = 4e-09
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 55/195 (28%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
++ G + L G + +A+
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAH--------------------------------- 32
Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 285
EQ L + F D + E + +F+ A EY+ +++ + L
Sbjct: 33 EQRLLIAKEFGDKAA---ERIAYSNLGNAYIFLGEFETASEYYKKTLLL---ARQLKDRA 86
Query: 286 AM--------LMLQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQRGRLE 331
+ ++AI K ++I D+ A +LG G +
Sbjct: 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146
Query: 332 EAVKCFNKALPLARD 346
+A+ K L ++R+
Sbjct: 147 QAMHFAEKHLEISRE 161
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-----MLQARGN 295
+ A +F A + + + E R G
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Query: 296 VDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
+ A + +K + + D++ + +LG E+A+ K L +A++
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121
Score = 29.4 bits (67), Expect = 1.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
A+ LG G +AV + L +A++ + +
Sbjct: 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 48
Score = 29.4 bits (67), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
A S Y G Y L YE+A+ K +A+
Sbjct: 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Score = 28.7 bits (65), Expect = 3.1
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
+ + G Y G +++A+ +K + +
Sbjct: 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 28.7 bits (65), Expect = 3.7
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512
++ G + L G + +A+ ++ + +
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 38
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 56.8 bits (137), Expect = 5e-09
Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 27/225 (12%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
HI +A +L + F K D D A A Y + + Q E+A +
Sbjct: 12 EHIAKAEKYLK--TSFMKWKPDYDSA-------ASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 198 IALNPN----FHVARA--QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251
+ N FH A+A Q ++ + + + + T A
Sbjct: 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122
Query: 252 AQVLVDQEDFDGAEEYFNRSIRV-----DPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306
+++ + D A + ++ V A+ + +A +L + DEA ++K
Sbjct: 123 GKLM-EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181
Query: 307 ISID------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
S+ +C +++ R A KC ++ +
Sbjct: 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG 226
Score = 51.8 bits (124), Expect = 2e-07
Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 24/241 (9%)
Query: 292 ARGNVDEAIKLIEKAISIDKSCMF-----------AYETLGTIEVQRGRLEEAVKCFNKA 340
A + EA + I KA K+ Y +LE+A + +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 341 LPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEK-LAIKQLRENND 399
+ SL AA A + + K + + + EK + D
Sbjct: 63 AEAHA------NNRSLFHAAKAFE---QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 400 IIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459
D+ GK +M+ D ++ + + + E K L +
Sbjct: 114 TAAMALDRAGK--LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171
Query: 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
A+ + + + + P + + Y A + + ++ ++ P F +
Sbjct: 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGS 230
Query: 520 R 520
Sbjct: 231 E 231
Score = 33.7 bits (77), Expect = 0.13
Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208
A + +A A + E E+ A+ + ++ +++EA +L K ++
Sbjct: 134 AVHLYQQA-AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 209 AQRHFVVHKMIV---PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL--VDQEDFDG 263
+ +++V D ++ ++E + + E C +L D++D +
Sbjct: 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS--EDCAALEDLLQAYDEQDEEQ 250
Query: 264 AEEYFNRSI--RVDPENASL 281
+ +D + A L
Sbjct: 251 LLRVCRSPLVTYMDNDYAKL 270
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 53.1 bits (128), Expect = 5e-09
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 315
Q + A +++ I P+N Y ++AM + L G +AI++ ++ + +
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTSTAEH 73
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALP 342
++ + + AV +
Sbjct: 74 VAIRSK-LQYRLELAQGAVGSVQIPVV 99
Score = 39.2 bits (92), Expect = 4e-04
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 443 IEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 502
+ + EK N ++ + +A D+ P Y + G+Y +A
Sbjct: 1 MSQFEKQKEQGNSLFKQG---LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA 57
Query: 503 LRNLDKTIALNPNFHVA 519
++ + +
Sbjct: 58 IQMCQQGLRYTSTAEHV 74
Score = 38.4 bits (90), Expect = 7e-04
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207
+ +A D+ P Y + G+Y +A++ + +
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74
Score = 34.2 bits (79), Expect = 0.023
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
+ I P+ V + +A+ + ++T+A + +
Sbjct: 28 DQLIT----------AQPQNPV-GYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIA 199
+ Y L + A+ ++ +
Sbjct: 76 IRSKLQYRL-ELAQGAVGSVQIPVV 99
Score = 33.8 bits (78), Expect = 0.028
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQL 124
+ F+ Y A+ + I + N +A I + T+AI+ Q
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQN-----PVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 125 VEDTSVDPKIKVNAHIKRAVVH-----LHAASDFTKAFADLDEAEK 165
+ + I+ + + A ++DE +
Sbjct: 65 LR---YTSTA-EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106
Score = 33.1 bits (76), Expect = 0.055
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
++T+A + + + Y L + A+ ++ +
Sbjct: 53 EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL-ELAQGAVGSVQIPVV 99
Score = 32.3 bits (74), Expect = 0.10
Identities = 14/138 (10%), Positives = 34/138 (24%), Gaps = 42/138 (30%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
+ ++G G Y EA+ D+ I P V + +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK------------------- 44
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290
A L+ ++ A + + +R + + +
Sbjct: 45 ---------------------AMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY- 82
Query: 291 QARGNVDEAIKLIEKAIS 308
A+ ++ +
Sbjct: 83 -RLELAQGAVGSVQIPVV 99
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 53.1 bits (128), Expect = 1e-08
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDP---ENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 312
D+ GA + +++ +D + A L+ +RA L L + D+A KAI D
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEASKAIEKDGG 97
Query: 313 CMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
+ A + GRL++AV + +
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQRCV 126
Score = 45.8 bits (109), Expect = 4e-06
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNA--HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
T+A+ +D + A H RA HL D+ KA + +A + D
Sbjct: 52 TQALG----------LDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVK 100
Query: 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ Y+R Q G+ ++A+ +L + ++L P
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS 129
F+ DY A+ T+ + ++ +A+ RA ++ KA + ++ +E
Sbjct: 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--- 93
Query: 130 VDPK-IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172
D +K A +R+ +A DL ++P
Sbjct: 94 KDGGDVK--ALYRRSQAL-EKLGRLDQAVLDLQRCVSLEPKNKV 134
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ KA + +A + D + Y+R Q G+ ++A+ +L + ++L P
Sbjct: 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Score = 31.6 bits (72), Expect = 0.28
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
A + ED+D AE +++I D + R+ L+ G +D+A+ +++ +S++
Sbjct: 72 AACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA-LEKLGRLDQAVLDLQRCVSLEP 130
Query: 312 SCMFAYETLGTIE 324
E L I
Sbjct: 131 KNKVFQEALRNIS 143
Score = 30.4 bits (69), Expect = 0.76
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 43/135 (31%)
Query: 150 ASDFTKAFADLDEAEKVDPNVADS--YYQ-RGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
D+ A A +A +D D ++ R + Y++A K I +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266
A +R +Q L D A
Sbjct: 101 ALYRR----------------------------------------SQALEKLGRLDQAVL 120
Query: 267 YFNRSIRVDPENASL 281
R + ++P+N
Sbjct: 121 DLQRCVSLEPKNKVF 135
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADS--YYQ-RGQIYCLFGQYEEALRNLDKTIALNPNFHV 518
D+ A A +A +D D ++ R + Y++A K I +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 519 A---RAQRHF 525
A R+Q
Sbjct: 101 ALYRRSQALE 110
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADS-YYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
L D A L+E + +P D YY G Y G +++AL N I LNP+
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 206 VARAQR 211
+A++
Sbjct: 70 ALQARK 75
Score = 51.2 bits (123), Expect = 2e-08
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 464 DFTKAFADLDEAEKVDPNVADS-YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
D A L+E + +P D YY G Y G +++AL N I LNP+ +A+
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74
Query: 523 R 523
+
Sbjct: 75 K 75
Score = 47.7 bits (114), Expect = 3e-07
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 290 LQARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
L +G+++ A++ +E+ + + AY +G + G ++A+ + A+ L D
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 349 EL 350
L
Sbjct: 70 AL 71
Score = 43.9 bits (104), Expect = 6e-06
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
+ L++Q D + A + ++ +P Y + G+ +A+ + AI ++
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMG-NAYRKLGDWQKALNNYQSAIELN 65
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
R + + + +NK +
Sbjct: 66 PDSPALQA--------RKMVMDILNFYNKDM 88
Score = 36.6 bits (85), Expect = 0.003
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 48/123 (39%)
Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
G E AL+ L++ + P
Sbjct: 14 GDIENALQALEEFLQTEPV---------------------------------------GK 34
Query: 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304
EA L D+ A + +I ++P++ + LQAR V + +
Sbjct: 35 DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA---------LQARKMVMDILNFYN 85
Query: 305 KAI 307
K +
Sbjct: 86 KDM 88
Score = 29.2 bits (66), Expect = 1.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 497 GQYEEALRNLDKTIALNPNFH 517
G E AL+ L++ + P
Sbjct: 14 GDIENALQALEEFLQTEPVGK 34
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 50.9 bits (123), Expect = 2e-08
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188
++DP A + D+ +A +A ++DPN A+++Y G Y G Y+
Sbjct: 2 AMDPGNSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 189 EALRNLDKTIALNPNFHVA 207
EA+ K + L+PN A
Sbjct: 61 EAIEYYQKALELDPNNAEA 79
Score = 48.9 bits (118), Expect = 1e-07
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 262 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321
+ AE ++N +G+ DEAI+ +KA+ +D + A+ LG
Sbjct: 7 NSAEAWYNLGN----------------AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 50
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAE 349
++G +EA++ + KAL L + AE
Sbjct: 51 NAYYKQGDYDEAIEYYQKALELDPNNAE 78
Score = 47.4 bits (114), Expect = 3e-07
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
D+ +A +A ++DPN A+++Y G Y G Y+EA+ K + L+PN A
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 47.0 bits (113), Expect = 4e-07
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 236 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295
N + N+ Q D+D A EY+ +++ +DP NA + + +G+
Sbjct: 7 NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58
Query: 296 VDEAIKLIEKAISIDKSCMFAYETLGTI 323
DEAI+ +KA+ +D + A + LG
Sbjct: 59 YDEAIEYYQKALELDPNNAEAKQNLGNA 86
Score = 43.2 bits (103), Expect = 1e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 480 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
N A+++Y G Y G Y+EA+ K + L+PN A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 55.1 bits (133), Expect = 3e-08
Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 12/208 (5%)
Query: 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA 156
+A +A Y AI+ +Q +E + N R++ +L + A
Sbjct: 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGN----RSLAYLRT-ECYGYA 59
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV-- 214
D A ++D YY+R G++ ALR+ + + + P+ A+ +
Sbjct: 60 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119
Query: 215 -VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV---LVDQEDFDGAEEYFNR 270
V + ++ + + +D S +E ++ V +++
Sbjct: 120 IVKQKAFE-RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD 178
Query: 271 SIRVDPENASLYVHRAMLMLQARGNVDE 298
++ + A + + +L + E
Sbjct: 179 QKKLHRKCAYQILVQVKEVLSKLSTLVE 206
Score = 47.4 bits (113), Expect = 1e-05
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
+ A D A ++D YY+R G++ ALR+ + + + P+ A+ +
Sbjct: 55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 113
Score = 45.8 bits (109), Expect = 2e-05
Identities = 25/161 (15%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
+D++ A ++++++I ++P NA Y +R++ L+ A+ +AI +DK + Y
Sbjct: 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGY 77
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377
+ G+ A++ + + + + + A + + C + +K+K
Sbjct: 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKD----------AKMKYQECNKI-VKQKAF 126
Query: 378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKAD 418
R+ ++++ + L + + + + G + K
Sbjct: 127 ERAIAGDEHKRSVVDSL--DIESMTIEDEYSGPKLEDGKVT 165
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 51.8 bits (125), Expect = 2e-07
Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 49/194 (25%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P+VA +Y +Y+EA L+ +A+ RE+
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAI-----------------------REKT 76
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PENA 279
H V A + + + AE R+ IR P+ A
Sbjct: 77 ---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLE 331
+ A+L Q +G +E +A+ I + + L + +++G+ +
Sbjct: 128 KQLNNLALL-CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186
Query: 332 EAVKCFNKALPLAR 345
+A + + L A
Sbjct: 187 DAETLYKEILTRAH 200
Score = 50.2 bits (121), Expect = 6e-07
Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 50/191 (26%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P VA + +Y G+Y+EA + + + RE+V
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----------------------REKV 118
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPENA 279
H +V + A + +Q + E Y+ R+ I DP A
Sbjct: 119 ---------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---------AYETLGTIEVQRGRL 330
+ A +G +A L ++ ++ F + E + +
Sbjct: 170 KTKNNLASC-YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228
Query: 331 EEAVKCFNKAL 341
++
Sbjct: 229 RDSAPYGEYGS 239
Score = 47.9 bits (115), Expect = 3e-06
Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 52/191 (27%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P+VA + G+ EE + + +
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-----------------------YATR 160
Query: 228 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSI---------RVDP 276
NV A T A + Q + AE + + V+
Sbjct: 161 ---------LGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGRL 330
+N +++H +++ ++ E + +LG + ++G+L
Sbjct: 210 DNKPIWMHAEER-EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268
Query: 331 EEAVKCFNKAL 341
E A + A
Sbjct: 269 EAAHTLEDCAS 279
Score = 46.4 bits (111), Expect = 1e-05
Identities = 17/151 (11%), Positives = 35/151 (23%), Gaps = 42/151 (27%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
DPNVA + Y G+Y++A
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLY-------------------------------- 192
Query: 227 VEQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PEN 278
++ L + + + ++ + Y P
Sbjct: 193 -KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309
+ L + +G ++ A L + A
Sbjct: 252 NTTLRSLGAL-YRRQGKLEAAHTLEDCASRN 281
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 228 EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 278
+Q+L++ H +V + A V DQ + A N + IR P
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRGRL 330
A+ + A+L RG EA L ++A+ I + L + +G+
Sbjct: 85 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 331 EEAVKCFNKAL 341
EE + +AL
Sbjct: 144 EEVEYYYRRAL 154
Score = 33.3 bits (77), Expect = 0.16
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLEEAVK 335
H A+ L ++A+ + L + + + +EA
Sbjct: 5 HHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAH 64
Query: 336 CFNKAL 341
N AL
Sbjct: 65 LLNDAL 70
Score = 27.9 bits (63), Expect = 8.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEAL 503
DPNVA + Y G+Y++A
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAE 189
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 51.8 bits (125), Expect = 2e-07
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 49/191 (25%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
P + + Y G+YE A+ + + D E+
Sbjct: 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALE-----------------------DLEK 59
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPEN 278
H +V + A V DQ + A N + IR P
Sbjct: 60 T---------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRGRL 330
A+ + A+L RG EA L ++A+ I + L + +G+
Sbjct: 111 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169
Query: 331 EEAVKCFNKAL 341
EE + +AL
Sbjct: 170 EEVEYYYQRAL 180
Score = 50.6 bits (122), Expect = 6e-07
Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P+VA + G+YEE + + + +
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI-----------------------YQTK 186
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI---------RVDPEN 278
NV + A + Q F AE + + VD EN
Sbjct: 187 ---------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGRLEE 332
+++H + +G + E + + LG + ++G+ E
Sbjct: 238 KPIWMHAEER-EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296
Query: 333 AVKCFNKAL 341
A A+
Sbjct: 297 AETLEEAAM 305
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 49/194 (25%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P+VA +Y +Y++A L+ +A+ RE+
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAI-----------------------REKT 102
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PENA 279
H V A + + + AE R+ IR P+ A
Sbjct: 103 ---------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLE 331
+ A+L Q +G +E ++A+ I ++ + L + +++G+ +
Sbjct: 154 KQLNNLALL-CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212
Query: 332 EAVKCFNKALPLAR 345
+A + + L A
Sbjct: 213 QAETLYKEILTRAH 226
Score = 47.9 bits (115), Expect = 4e-06
Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 50/191 (26%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P VA + +Y G+Y+EA + + + RE+V
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-----------------------REKV 144
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPENA 279
H +V + A + +Q ++ E Y+ R+ I DP A
Sbjct: 145 ---------LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---------AYETLGTIEVQRGRL 330
+ A +G +A L ++ ++ F + E +G+
Sbjct: 196 KTKNNLASC-YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254
Query: 331 EEAVKCFNKAL 341
++
Sbjct: 255 KDGTSFGEYGG 265
Score = 47.1 bits (113), Expect = 7e-06
Identities = 17/153 (11%), Positives = 33/153 (21%), Gaps = 42/153 (27%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226
DPNVA + Y G++++A
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLY-------------------------------- 218
Query: 227 VEQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PEN 278
++ L + + + P
Sbjct: 219 -KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
+ + L + +G + A L E A+ K
Sbjct: 278 TTTLKNLGAL-YRRQGKFEAAETLEEAAMRSRK 309
Score = 28.7 bits (65), Expect = 5.5
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
DPNVA + Y G++++A + +
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 28.3 bits (64), Expect = 7.4
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALR 504
P + + Y G+YE A+
Sbjct: 23 IPARLRTLHNLVIQYASQGRYEVAVP 48
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 48.2 bits (115), Expect = 3e-07
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 260 DFDGAEEYFNRSIRV---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316
A Y+ ++I + A Y+ + G +A ++ + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351
+ GR E+ V+ K + D+ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
Score = 43.9 bits (104), Expect = 9e-06
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
++A+ Y G + G+Y +A L + PN R
Sbjct: 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Score = 43.9 bits (104), Expect = 9e-06
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523
++A+ Y G + G+Y +A L + PN R
Sbjct: 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Score = 43.9 bits (104), Expect = 1e-05
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
++ AE ++ P + +L V AM +L G ++ ++L+ K I+
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM-VLYNLGRYEQGVELLLKIIAET 91
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 294 GNVDEAIKLIEKAISI---DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350
G +A+ EKAI+ K Y LG+ G +A + + L
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 351 SHIYSL 356
Y++
Sbjct: 64 RVFYAM 69
Score = 40.9 bits (96), Expect = 1e-04
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
+A+ + + + ++ ++ KA A L K PN
Sbjct: 8 QAVPYYEKAIASGLQGKDL-AECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ G+YE+ + L K IA +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSD 93
Score = 38.5 bits (90), Expect = 8e-04
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
++ KA A L K PN + G+YE+ + L K IA +
Sbjct: 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 47.4 bits (113), Expect = 2e-06
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 10/129 (7%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA------SDFTKAFADLDEAEKVDP 168
A+ L L+ V K ++ + + D +A E K +
Sbjct: 35 RDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94
Query: 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228
+ ++R + + +EA +L + +P A+ +V + E+
Sbjct: 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR----AEKKA 150
Query: 229 QSLKEFRNF 237
S +
Sbjct: 151 DSRVTYSKM 159
Score = 39.7 bits (93), Expect = 6e-04
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D +A E K + + ++R + + +EA +L + +P
Sbjct: 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
Score = 38.5 bits (90), Expect = 0.002
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 258 QEDFDGAEEYFNRSIR------------------VDPENASLYVHRAMLMLQARGNVDEA 299
Q+D+ A + + ++ +D +N LY + + L G++ EA
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEA 82
Query: 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA-RDEAELSHIYSLRD 358
+ + + +++ A + +L+EA + L + ++ +
Sbjct: 83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142
Query: 359 AAIAQMKVCERYNIKK 374
A+ K R K
Sbjct: 143 ERRAEKKADSRVTYSK 158
Score = 34.7 bits (80), Expect = 0.029
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
+Q ++ D AEE + ++ + N RA A +DEA + ++ +
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA-RIAAWKLDEAEEDLKLLLRNHP 128
Query: 312 S 312
+
Sbjct: 129 A 129
Score = 33.5 bits (77), Expect = 0.066
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
D A +E ++ + KAL R RA I + +A EDL L+ P
Sbjct: 77 GDLHEAEETSSEVLK-REETNEKALFR--RAKARIAAWKLDEAEEDLKLLLR---NHPAA 130
Query: 135 K 135
Sbjct: 131 A 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 48.9 bits (116), Expect = 3e-06
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 116 KAIEDLTQLVEDTSVDPK----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA 171
K + L + + K + A + A+ +L ++TKA D+A +D
Sbjct: 293 KIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKALGLDSANE 351
Query: 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
Y+RG+ L ++E A + +K + +NP AR Q
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Score = 46.6 bits (110), Expect = 2e-05
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 23/188 (12%)
Query: 358 DAAIAQMKVCERYNIK-------KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK 410
D A+ +M+ E+ + + I N +L + ++ + + K
Sbjct: 203 DKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTK 262
Query: 411 TVVMDKADYTQKMTSILNSNDYE-----------IIPGDPTKTIEESEKYGNLENESGQK 459
+ A +K T Y + + + +ES+ + +
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322
Query: 460 HAA-----SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
A ++TKA D+A +D Y+RG+ L ++E A + +K + +NP
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
Query: 515 NFHVARAQ 522
AR Q
Sbjct: 383 QNKAARLQ 390
Score = 34.7 bits (79), Expect = 0.083
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
A + ++ A E ++++ +D N R + A EK + ++
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA-QLLMNEFESAKGDFEKVLEVNP 382
Query: 312 S 312
Sbjct: 383 Q 383
Score = 33.9 bits (77), Expect = 0.14
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
+Y A+ C + + S + K L R R + ++ A D +++E V+P+
Sbjct: 331 REYTKAVECCDKALG-LDSANEKGLYR--RGEAQLLMNEFESAKGDFEKVLE---VNPQN 384
Query: 135 K-VNAHIKRAVVHLHAASD-----FTKAFADLDEAEK 165
K I ++ + F E +
Sbjct: 385 KAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA 421
Score = 32.0 bits (72), Expect = 0.50
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
+A++ +KA+ +D + G ++ E A F K L
Sbjct: 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Score = 29.3 bits (65), Expect = 4.3
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293
+ + +F+ A+ F + + V+P+N + + M Q +
Sbjct: 358 GEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQISMCQKK 397
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 48.1 bits (114), Expect = 4e-06
Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 22/238 (9%)
Query: 119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG 178
L + + ++ + +E + + R
Sbjct: 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110
Query: 179 QIYCLFGQ-------YEEALRNLDKTIALNP-NFHVARAQRHFVVHKMIVPGDRERVEQS 230
I + L+ ++ +P N H + R ++V + D + +
Sbjct: 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH-VWSYRKWLVDTFDLHNDAKELSFV 169
Query: 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE------EYFNRSIRVDPENASLYVH 284
K + +S A + +L ++ Y I P+N S + +
Sbjct: 170 DKVIDTDLKNNS----AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKS---CMFAYETLGTIEVQRGRLEEAVKCFNK 339
+ + ++ + + + + ++K FA ETL I Q+ + E+ ++
Sbjct: 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 47.4 bits (112), Expect = 4e-06
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 6/125 (4%)
Query: 88 IESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147
+E+ ++ L ++A VY + T I+ + + D + A + V
Sbjct: 125 LEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAA 182
Query: 148 HAASDFTKAFADLDEAEK---VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
+ A FT+A L EA + + G A+ L+ +P
Sbjct: 183 NLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241
Query: 205 HVARA 209
VA A
Sbjct: 242 KVAAA 246
Score = 42.8 bits (100), Expect = 2e-04
Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 26/224 (11%)
Query: 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
++ E D + D++ G+I C + L + NF +
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWI--GRIRC----GDTDRVTLFRAWYSRRNFG--QLS 71
Query: 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270
+ + + ++ + FA Q ++ A E
Sbjct: 72 GSVQIS----MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA 127
Query: 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF--AYETLGTIEVQRG 328
+ E+ ++ +A++ A + I ++ A + A G
Sbjct: 128 APVAGSEHLVAWM-KAVVYGAAE-RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185
Query: 329 RLEEAVKCFNKAL-----PLARDEAELSHIYSLR-----DAAIA 362
EA + +A + R AA+A
Sbjct: 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229
Score = 37.0 bits (85), Expect = 0.010
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 465 FTKAFADLDEAEK---VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521
FT+A L EA + + G A+ L+ +P VA A
Sbjct: 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAA 246
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 47.6 bits (113), Expect = 6e-06
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 115 TKAIEDLTQLVEDTSVDPK----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
K + L ++ + + +++ +H+ A+ HL F+ A ++A ++D N
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNN 229
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
+RG+ + +E A + K + L PN A+ Q ++ R ++ +
Sbjct: 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI-----RRQLARE 284
Query: 231 LKEFRNF 237
K + N
Sbjct: 285 KKLYANM 291
Score = 41.8 bits (98), Expect = 3e-04
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
F+ A ++A ++D N +RG+ + +E A + K + L PN A+ Q
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Score = 37.2 bits (86), Expect = 0.011
Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 258 QEDFDGAEEYFNRSIRVDPEN---------------ASLYVHRAMLMLQARGNVDEAIKL 302
+ + A + + + + +++ AM L+ AI+
Sbjct: 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIES 218
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIA 362
KA+ +D + G + E A F K L L + ++ I
Sbjct: 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278
Query: 363 QMKVCERYNIKKKVSPRSQNITKNEK 388
+ E+ ++ K +
Sbjct: 279 RQLAREKKLYANMFERLAEEENKAKA 304
Score = 36.8 bits (85), Expect = 0.013
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 28/154 (18%)
Query: 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218
+++ EK+ + +RG +Y G+Y++AL K ++ +
Sbjct: 137 EMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--------------LEYE 180
Query: 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
+ E Q + R + +H N+ A + + F A E N+++ +D N
Sbjct: 181 SSFSNEE--AQKAQALR--LASHLNL-------AMCHLKLQAFSAAIESCNKALELDSNN 229
Query: 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312
R A + + A +K + + +
Sbjct: 230 EKGLSRRGEA-HLAVNDFELARADFQKVLQLYPN 262
Score = 34.5 bits (79), Expect = 0.087
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
+ + AI C + +E S+N K L+R R ++ + A D ++++ + P
Sbjct: 210 QAFSAAIESCNKALELDSNN-EKGLSR--RGEAHLAVNDFELARADFQKVLQ---LYPN- 262
Query: 135 KVNAHIKRAVVHL 147
N K +
Sbjct: 263 --NKAAKTQLAVC 273
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 47.3 bits (112), Expect = 7e-06
Identities = 15/144 (10%), Positives = 44/144 (30%), Gaps = 12/144 (8%)
Query: 94 NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153
+A+ + A Y+ + + +K H+ A + +
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA------VKNPCHLNIAACLIKL-KRY 246
Query: 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213
+A + + + ++RG+ GQ + A + K P+ R +
Sbjct: 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306
Query: 214 VVHKMIVPGDRERVEQSLKEFRNF 237
+ + + ++ + ++
Sbjct: 307 LAEQE-----KALYQKQKEMYKGI 325
Score = 41.2 bits (96), Expect = 6e-04
Identities = 9/59 (15%), Positives = 21/59 (35%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
+ +A + + + ++RG+ GQ + A + K P+ R +
Sbjct: 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRE 303
Score = 37.7 bits (87), Expect = 0.007
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 1/159 (0%)
Query: 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288
K N + + EA + + D + Y +++ A
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
+++ DEAI ++ ++ A G + + G+++ A F KA A D+
Sbjct: 240 LIK-LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
Query: 349 ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNE 387
+ + ++ K + + K++
Sbjct: 299 AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
Score = 34.2 bits (78), Expect = 0.11
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
+ Y AI HC + N KAL R R Q A +D + + P
Sbjct: 244 KRYDEAIGHCNIVLTEEEKN-PKALFR--RGKAKAELGQMDSARDDFRKAQK---YAPDD 297
Query: 135 K-VNAHIKRAVVHLHAASD-----FTKAFADLDEAEKVDPN 169
K + ++ A + F DE +
Sbjct: 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSKS 338
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 43.6 bits (103), Expect = 4e-05
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 11/128 (8%)
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNA-----HIKRAVVHLHAASDFTKAFADLDEAEKVDPN 169
+A++ E K ++ A + D+ KA + K+D N
Sbjct: 62 KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKIDKN 120
Query: 170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ 229
+ Y+ G FG EEA NL K +LNPN R V+K+ +E ++
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL-----KEARKK 175
Query: 230 SLKEFRNF 237
F
Sbjct: 176 DKLTFGGM 183
Score = 40.9 bits (96), Expect = 4e-04
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 258 QEDFDGAEEYFNRSIRVDPEN----------------ASLYVHRAMLMLQARGNVDEAIK 301
+ + + A + ++ S ++ A + + +AI
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAID 109
Query: 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI 361
K + IDK+ + A LG + G LEEA + KA L + ++ + Y L +
Sbjct: 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169
Query: 362 AQMKVCERYNIKK 374
+ + ++
Sbjct: 170 KEARKKDKLTFGG 182
Score = 39.4 bits (92), Expect = 0.001
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ KA + K+D N + Y+ G FG EEA NL K +LNPN
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Score = 32.8 bits (75), Expect = 0.18
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 75 EDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134
+DY AI H ++ ++ +N KAL + ++ +A E+L + ++P
Sbjct: 102 KDYPKAIDHASKVLKIDKNN-VKALYK--LGVANMYFGFLEEAKENLYKAAS---LNPNN 155
Query: 135 K-VNAHIKRAVVHLHAASD-----FTKAFADLDEAEK 165
+ + V L A F F E+
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEE 192
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 44.6 bits (105), Expect = 4e-05
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 5/134 (3%)
Query: 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205
+ + +A L EA K P A ++ C+ G +E A L ++I L P
Sbjct: 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-- 63
Query: 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE 265
+ +V + R + + V + + + + + +D++
Sbjct: 64 ---YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120
Query: 266 EYFNRSIRVDPENA 279
E + + E
Sbjct: 121 ELALQIEELRQEKG 134
Score = 43.4 bits (102), Expect = 9e-05
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
+ +A L EA K P A ++ C+ G +E A L ++I L P +
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 521 AQ 522
+Q
Sbjct: 69 SQ 70
Score = 29.9 bits (67), Expect = 1.8
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+ G + +A++L+ +AI + + G E A + +++ L +
Sbjct: 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66
Query: 350 LSHIYSLRDAAIAQMK 365
+ R A
Sbjct: 67 GASQL--RHLVKAAQA 80
Score = 28.8 bits (64), Expect = 4.4
Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---A 279
+++Q+L+ + + F ++L DF+ A+E +SI++ PE A
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 280 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339
S + QAR + + + + + + + E+ + +
Sbjct: 69 SQL-RHLVKAAQARKDFAQGAA--TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 125
Query: 340 ALPLARDEAE 349
L +++
Sbjct: 126 IEELRQEKGF 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 43.0 bits (101), Expect = 5e-05
Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 8/159 (5%)
Query: 56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQST 115
+N S + LL + + ++ A+ + + + + T Q
Sbjct: 1 SNASPDEQLLKQVSELLQQGEHAQALNVI-QTLSDELQSRGDVKLAKADC--LLETKQFE 57
Query: 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175
A E L + + + + A + LH + + L++ +P+ +
Sbjct: 58 LAQELLATIPLEYQDN-----SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112
Query: 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214
+ Y G+ EEAL L + +N ++ F+
Sbjct: 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151
Score = 42.6 bits (100), Expect = 8e-05
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
+ Q+L + D + + A L++ + F+ A+E +I ++ ++ S
Sbjct: 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA-TIPLEYQDNSYK 76
Query: 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342
A L L + +K +E+ ++ + L Q GR EEA++ L
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136
Query: 343 LARDEAE 349
+ +
Sbjct: 137 VNLGAQD 143
Score = 40.0 bits (93), Expect = 6e-04
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 1/112 (0%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311
L+ Q + A + + +A +L+ + A +L+ +
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ 71
Query: 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363
+ Q+ +K + L D EL+ +++ + +
Sbjct: 72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123
Score = 33.4 bits (76), Expect = 0.098
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
Query: 286 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
+LQ G +A+ +I+ +S ++ + E A + +PL
Sbjct: 13 VSELLQQ-GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA-TIPLEY 70
Query: 346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENN 398
+ + + + + E ++++++ N +LA++ +
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123
Score = 29.9 bits (67), Expect = 1.4
Identities = 6/68 (8%), Positives = 14/68 (20%)
Query: 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517
+ + +A + + D + Q+E A L +
Sbjct: 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS 74
Query: 518 VARAQRHF 525
Sbjct: 75 YKSLIAKL 82
Score = 29.6 bits (66), Expect = 1.8
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
L++ +P+ + + Y G+ EEAL L + +N ++ F+
Sbjct: 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 43.6 bits (103), Expect = 1e-04
Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 54 GDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIEST---SSNHTKALARLLRATVYIF 110
GD++ D K + ++ I +T S N A+ + + Y+
Sbjct: 199 GDSHPDFPEDADVDLKDVDKILLISEDLK----NIGNTFFKSQNWEMAIKKYTKVLRYVE 254
Query: 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170
S++ D +L + ++ + L SD+ A EA ++DP+
Sbjct: 255 GSRAAAEDADGAKLQ-------PVALSCVLNIGACKLKM-SDWQGAVDSCLEALEIDPSN 306
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ Y+R Q + +Y++AL +L K + P
Sbjct: 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
Score = 41.2 bits (97), Expect = 6e-04
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
SD+ A EA ++DP+ + Y+R Q + +Y++AL +L K + P
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
Score = 30.5 bits (69), Expect = 1.5
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
+ D+ GA + ++ +DP N RA Q D+A+ ++KA I
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG-WQGLKEYDQALADLKKAQEIA 337
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 43.5 bits (102), Expect = 1e-04
Identities = 32/232 (13%), Positives = 60/232 (25%), Gaps = 13/232 (5%)
Query: 119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF-TKAFADLDEAEKVDPNVADSYYQR 177
+ ED ++ K +V ++ ++ L D +A L+++ K+ D +
Sbjct: 19 KSNPLRTEDQTLITK-RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77
Query: 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNF 237
YE A+ L K N + A A E+V
Sbjct: 78 LFSDEAANIYERAISTLLKK---NMLLYFAYA------DYEESRMKYEKVHSIYNRLLAI 128
Query: 238 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297
D + + E F ++ +YV A++ +
Sbjct: 129 EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186
Query: 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
A K+ E + F + L E
Sbjct: 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 43.1 bits (101), Expect = 1e-04
Identities = 29/235 (12%), Positives = 71/235 (30%), Gaps = 22/235 (9%)
Query: 63 DLLSKAKRAF-EHEDYLTAIRHCTEEIE---STSSNHTKALARLLRATVYIFTSQSTKAI 118
DL +A + ++ A + + + + + S A+
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97
Query: 119 EDLTQLVE--DTSVDPKIKVNAHIKRAVVHLHAASDFTKAF------ADLDEAEKVDPNV 170
+ L ++ + N + + + D+ KA + ++
Sbjct: 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV----PGDRER 226
+ + + L GQY EA K I + +++ K + D
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217
Query: 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVL-----VDQEDFDGAEEYFNRSIRVDP 276
++L+E ++ ++ E ++ D E + F+ +R+D
Sbjct: 218 AARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Score = 40.4 bits (94), Expect = 8e-04
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMF-----------AYETLGTIEVQRGRLEEAVKCF 337
+ + A K + K TI R L A F
Sbjct: 1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60
Query: 338 NKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN 397
KA + + +A ++ + + K + + + + I R
Sbjct: 61 LKAADYQK------KAGNEDEAGNTYVEAYKCF--KSGGNSVNAVDSLENAIQIFTHRGQ 112
Query: 398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG 457
+ G+ + D DY + + + ++ + + K +L+ G
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172
Query: 458 Q-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
Q A+ ++K ++ D + ++G A R L + + +PNF
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232
Query: 517 HVAR 520
+R
Sbjct: 233 ADSR 236
Score = 36.9 bits (85), Expect = 0.014
Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 48/217 (22%)
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+KRA +S F K F+ D + AD Q IY L + A +
Sbjct: 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKF--EEAADLCVQAATIYRLRKELNLAGDSF 60
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
K K+ N + + VEA +
Sbjct: 61 LKAADYQ------------------------------KKAGNEDEAGNTYVEA----YKC 86
Query: 255 LVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
+ A + +I++ A+ ++ + +AI E A
Sbjct: 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146
Query: 309 IDK------SCMFAYETLGTIEVQRGRLEEAVKCFNK 339
+ ++ G+ EA ++K
Sbjct: 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183
Score = 33.1 bits (75), Expect = 0.20
Identities = 13/71 (18%), Positives = 25/71 (35%)
Query: 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511
LEN+ A D + + ++ + + + L GQY EA K I
Sbjct: 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186
Query: 512 LNPNFHVARAQ 522
+ +++
Sbjct: 187 SSMGNRLSQWS 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 275 DPENASLYVHRAMLMLQARGNV--DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
+ A+ +A + DE L+E+A+ ++ A + R +E
Sbjct: 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQE 61
Query: 333 AVKCFNKALPLARDEAE 349
A+ + L +
Sbjct: 62 AIDTWVLLLDSNDPNLD 78
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 38.3 bits (88), Expect = 0.002
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 26/151 (17%)
Query: 165 KVDPNVADSYYQRGQIYCLF--GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222
K V +Y G+Y+EA N + + ++ A H
Sbjct: 3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC--- 59
Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
H+ + EA D A YFNR ++ + L+
Sbjct: 60 ------------------HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW 101
Query: 283 VHRAM---LMLQARGNVDEAIKLIEKAISID 310
+ L L G EA+ +K + +
Sbjct: 102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132
Score = 34.1 bits (77), Expect = 0.043
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 293 RGNVDEAIKLIEKAISIDKSC------------MFAYETLGTIEVQRGRLEEAVKCFNKA 340
G DEA +A+ I + F + L +EA+ +KA
Sbjct: 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83
Query: 341 LPLARDEAEL 350
L EL
Sbjct: 84 LHYFNRRGEL 93
Score = 34.1 bits (77), Expect = 0.054
Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 11/107 (10%)
Query: 116 KAIEDLTQLVEDTSVDPK-IKVNAHIKRAVVHLH------AASDFTKAFADLDEAEKVDP 168
+A+E + + + D H A A KA + +++
Sbjct: 36 RAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95
Query: 169 NVADSY----YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
+ + Y R G+ EA+ K + + +
Sbjct: 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142
Score = 33.7 bits (76), Expect = 0.059
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSY----YQRGQIYCLFGQYEEALRNLDKTIALNPNF 516
A KA + +++ + + Y R G+ EA+ K + +
Sbjct: 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135
Query: 517 HVARAQR 523
+
Sbjct: 136 KGETPGK 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 39.4 bits (91), Expect = 0.002
Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 13/226 (5%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY-CLFGQYEEALRNLDKTIAL 200
RA+ S+ +A + +++P + R + L E+ LR +++
Sbjct: 61 RAIAAKEEKSE--RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ 118
Query: 201 NPNFHVARAQRHFVVHKM---IVPGDRERVEQSLKEF-RNFVDTHSNVVEACTLFAQVLV 256
N + R ++ ++ + E + SL +N+ +
Sbjct: 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178
Query: 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN------VDEAIKLIEKAISID 310
+ + ++ N +RVD N S + R L + G + + + I K+I +
Sbjct: 179 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSL 356
+ A+ L + ++ ++ + +
Sbjct: 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 38.7 bits (89), Expect = 0.004
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 283
K F D++ ++ V + +D++GA +Y + I+ AS+++
Sbjct: 327 KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISI 309
L + N K ++KAI+I
Sbjct: 387 KLGRLYMGL-ENKAAGEKALKKAIAI 411
Score = 32.2 bits (72), Expect = 0.48
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 11/129 (8%)
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
+ + R+ V NV+E E + E + V ++ +
Sbjct: 281 KLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYML 340
Query: 284 H---RAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLEE 332
H +AM + + + A+K +K I + LG + +
Sbjct: 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAA 400
Query: 333 AVKCFNKAL 341
K KA+
Sbjct: 401 GEKALKKAI 409
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.009
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141
Q+ K ++ +L D S P + + A ++
Sbjct: 20 QALKKLQASLKLYADDSA-PALAIKATME 47
Score = 27.6 bits (60), Expect = 7.3
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 11/35 (31%)
Query: 368 ERYNIKK-----KV-SPRSQNITKNEKLAIKQLRE 396
E+ +KK K+ + S LAIK E
Sbjct: 18 EKQALKKLQASLKLYADDSA-----PALAIKATME 47
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 35.9 bits (82), Expect = 0.012
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 20/101 (19%)
Query: 261 FDGAEEYFNRSIRVDPENASLYVHRAMLML---------QARGNVDEAIKLIEKAISIDK 311
F+ + + + +P +A ++L A+ + EAI E+A+ ID
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 312 SCMFAYETLGTIEVQRGRL-----------EEAVKCFNKAL 341
A +G L + A + F +A+
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118
Score = 35.1 bits (80), Expect = 0.024
Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPGDRERVEQSLKEFR------- 235
+E+ ++ + T NP + V+ ++ + ++ +++++ +F
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 236 NFVDTHSNVVEACTLFAQVLVDQ----EDFDGAEEYFNRSIRVDPENAS 280
+ + A T FA + D+ +FD A ++F +++ P+N
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126
Score = 33.2 bits (75), Expect = 0.084
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 432 YEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 491
Y+ P D L A +A +EA +DP ++ + G
Sbjct: 29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88
Query: 492 IYCLFGQ-----------YEEALRNLDKTIALNPN 515
Y F ++ A + + + P+
Sbjct: 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
Score = 30.9 bits (69), Expect = 0.53
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ-----------YEEALRNLDKTIALN 201
+A +EA +DP ++ + G Y F ++ A + + +
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 202 PN 203
P+
Sbjct: 122 PD 123
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 37.1 bits (85), Expect = 0.013
Identities = 34/257 (13%), Positives = 78/257 (30%), Gaps = 23/257 (8%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
+ D A + + R + P + + ++A N D+ KL ++ +
Sbjct: 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKVLHID 80
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL-SHIYSLRDAAIAQMKVCERYNIK 373
L + +G+L + +A A D+ + Y + I +K E
Sbjct: 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140
Query: 374 KK------VSPRSQNITKNEKLAIKQL--------RENNDIIIRPADKGGKTVVMDKADY 419
+ V Q N + I+QL N + + + M+
Sbjct: 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200
Query: 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479
++ +++ D P T +E+++ + K+ E + +
Sbjct: 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM-------WKKYIQWEKSNPLRTEDQTLI 253
Query: 480 PNVADSYYQRGQIYCLF 496
Y++ +
Sbjct: 254 TKRVMFAYEQCLLVLGH 270
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 36.5 bits (83), Expect = 0.023
Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 17/253 (6%)
Query: 4 DRGAQHAKEEISKRSFFKPS-----KQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNE 58
R A+ K +++ + Y K D L VE +
Sbjct: 9 LRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEY---ALDKKVEQDLWNHAF 65
Query: 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLR----ATVYIFTSQS 114
+++ L + + + + + +E+ S +T+ L L S
Sbjct: 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQ 125
Query: 115 TKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL----HAASDFTKAFADLDEAEKVDPNV 170
I + + + +VHL + ++A + A ++ P+
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN 185
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230
Y Q + G + + ++IA+ F A + K + D + +
Sbjct: 186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWG 245
Query: 231 LKEFRN-FVDTHS 242
+ +F F+ H
Sbjct: 246 VSDFIKAFIKFHG 258
Score = 31.5 bits (70), Expect = 0.86
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
++A + A ++ P+ Y Q + G + + ++IA+ F A
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223
Score = 29.9 bits (66), Expect = 2.6
Identities = 9/86 (10%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKAISIDKSCMF 315
+ + + ++ + S ++ L + R +A A + S
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKAL 341
Y L + +G + + +++
Sbjct: 188 PYNQLAILASSKGDHLTTIFYYCRSI 213
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 35.9 bits (83), Expect = 0.025
Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 1/129 (0%)
Query: 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280
+L + + E L A+ L+ + AE +I + ++
Sbjct: 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVL-XTIPLQDQDTR 185
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340
A + L + I+ +++ ++ + L Q GR EEA++
Sbjct: 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245
Query: 341 LPLARDEAE 349
L A+
Sbjct: 246 LRXDLTAAD 254
Score = 32.8 bits (75), Expect = 0.21
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 8/147 (5%)
Query: 68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED 127
A + + +Y A+ + S+ + + L I ++S A L +
Sbjct: 124 AMQLMQESNYTDAL-PLLXDAWQLSNQNGEIGLLLAET--LIALNRSEDAEAVLXTIPLQ 180
Query: 128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 187
D + + A + L + T L + +P A Q G+
Sbjct: 181 DQ-DTRYQG----LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN 235
Query: 188 EEALRNLDKTIALNPNFHVARAQRHFV 214
EEAL L + + + + F
Sbjct: 236 EEALELLFGHLRXDLTAADGQTRXTFQ 262
Score = 29.0 bits (65), Expect = 4.4
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 470 ADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526
L + +P A Q G+ EEAL L + + + + F
Sbjct: 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 35.9 bits (82), Expect = 0.026
Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 11/191 (5%)
Query: 55 DTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIE---STSSNHTKALARLLRATVYIFT 111
++ + + + + Y E++ + A +
Sbjct: 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128
Query: 112 SQSTKAIEDLTQLVE--DTSVDPKIKVNAHIKRAVVHL------HAASDFTKAFADLDEA 163
I +L +L+ T +D + A ++ F + L+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGD 223
+ Y + L +YEE+L ++K I ++ + +
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 224 RERVEQSLKEF 234
E E +++
Sbjct: 249 LEYEEAEIEDA 259
Score = 35.1 bits (80), Expect = 0.046
Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 16/132 (12%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENAS 280
++ L + +D + N+ + A + + + F + ++ + +
Sbjct: 139 KKLLNQQLTGIDVYQNLYIENAI-ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197
Query: 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS------CMFAYETLGTIEVQRGRLEEAV 334
+ + A L +E++ + KAI I Y G + E +
Sbjct: 198 VRYNHA-KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256
Query: 335 K-CFNKALPLAR 345
+ + KA
Sbjct: 257 EDAYKKASFFFD 268
Score = 31.3 bits (70), Expect = 0.72
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 1/138 (0%)
Query: 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPT 440
+ K K+ V+ K DY + + + ++ D
Sbjct: 93 EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152
Query: 441 KTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 499
+ + N+ E+G K F + L+ + Y + L +Y
Sbjct: 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212
Query: 500 EEALRNLDKTIALNPNFH 517
EE+L ++K I ++ +
Sbjct: 213 EESLYQVNKAIEISCRIN 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 35.2 bits (80), Expect = 0.051
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 224 RERVEQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------- 274
+ + D + ++ ++ + A Y R++
Sbjct: 307 LAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309
P + L L G +A+K + A I
Sbjct: 367 HPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDI 400
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 34.8 bits (79), Expect = 0.058
Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 26/209 (12%)
Query: 160 LDEAEKVDPNVADSYYQRGQIYCLFGQ--YEEALRNLDKTIALNP-NFHVARAQRHFVVH 216
L+ +V+P +++ R + + + L + + + NFH R FV
Sbjct: 97 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH-CWDYRRFVAA 155
Query: 217 KMIVPGDRE--RVEQSLKE-FRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEY 267
+ V E + + F N+ H + Q + + E
Sbjct: 156 QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL 215
Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVD----------EAIKLIEKAISIDKSCMFAY 317
+ DP + S + + L+ G + ++ ++ ++ +
Sbjct: 216 VQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275
Query: 318 ETLGTIEVQRGRLE---EAVKCFNKALPL 343
T+ + L E ++ F+ +
Sbjct: 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304
Score = 31.3 bits (70), Expect = 0.79
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 12/136 (8%)
Query: 186 QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV 245
E L + + NP+F R V+ + E +K F+++ +
Sbjct: 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES---CL 101
Query: 246 EACTLFAQV---------LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296
+ + ++ E R + D N + +R + QA
Sbjct: 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 161
Query: 297 DEAIKLIEKAISIDKS 312
E + + I+ + S
Sbjct: 162 AEELAFTDSLITRNFS 177
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote
interaction, syphilis, lipoprotein, transport protein;
2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Length = 301
Score = 32.5 bits (73), Expect = 0.32
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 291 QARGNVDEAIKLIEKAISIDKSCMF--AYETLGTIEVQR-----GRLEEAVKCFNKALPL 343
V A+ ++E+A + S + L G +E+A F
Sbjct: 174 ALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233
Query: 344 ARDEAELSHIYSLRDAAIAQ 363
HI I
Sbjct: 234 CSAHDPDHHITYADALCIPL 253
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.53
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 17/79 (21%)
Query: 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY-NIKKKVSPRSQN 382
E QR RL+E D A R+ A ++ E ++V N
Sbjct: 92 EEQRKRLQE------------LDAASKVMEQEWREKAKKDLE--EWNQRQSEQVEKNKIN 137
Query: 383 ITKNEKLAIKQLRENNDII 401
+K +Q DII
Sbjct: 138 NRIADKAFYQQPDA--DII 154
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 31.6 bits (72), Expect = 0.60
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 30 YLKSFPNDPILQPDGLSNGVELTNGDTNESHEL-DLLSKAKRAFE-----HEDYLTAIRH 83
+ + +P + L T + +++ + + + H
Sbjct: 169 LYRRQNGKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTH 228
Query: 84 CTEE-IESTSSNHTKALARLLRA 105
+ E+ + L +L+ A
Sbjct: 229 IVSQAREALQKGDLQRLGQLMNA 251
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 31.7 bits (71), Expect = 0.70
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 11/129 (8%)
Query: 187 YEEALRNLDKTIALNP-NFHVARAQRHFVVHKMIVPGDRE--RVEQSLKE-FRNFVDTH- 241
+ L + + + NFH R FV + V E + + F N+ H
Sbjct: 125 WARELELCARFLEADERNFH-CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 242 -----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296
+ Q + + E + DP + S + + L+ +A +
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243
Query: 297 DEAIKLIEK 305
+ +
Sbjct: 244 VLCCVHVSR 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 31.6 bits (72), Expect = 0.71
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 29/123 (23%)
Query: 253 QVLVDQEDFDGAEEYFNRSIRVD---------------PENASLYV----HRAMLMLQAR 293
Q L + + + A E ++ E A + L L+
Sbjct: 607 QTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKV- 665
Query: 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353
G + A L+ + K + LG +QR + A++ F A D L +
Sbjct: 666 GQLTLARDLLTDESAEMK-----WRALGDASLQRFNFKLAIEAFTN----AHDLESLFLL 716
Query: 354 YSL 356
+S
Sbjct: 717 HSS 719
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 31.1 bits (71), Expect = 0.81
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 264 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 318
A + + + V D AS L A ML+ ++E +K +++ + A
Sbjct: 130 ASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDER--MKNKDFKAIF 187
Query: 319 TLGTIE-VQR-GRL 330
+ + + + GR+
Sbjct: 188 YVSNFDYLVKGGRV 201
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 29.3 bits (66), Expect = 1.5
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 150 ASDFTKAFADLDEAEKVDPN---VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
+ A ++ PN ++ Y G+ Y ++ A ++ P
Sbjct: 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71
Score = 29.3 bits (66), Expect = 1.5
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 462 ASDFTKAFADLDEAEKVDPN---VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
+ A ++ PN ++ Y G+ Y ++ A ++ P
Sbjct: 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71
Score = 28.1 bits (63), Expect = 3.3
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 5/111 (4%)
Query: 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163
A + + A + +E NA + A +F A A +
Sbjct: 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYY-ATRNFQLAEAQFRDL 65
Query: 164 EKVDPN---VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
P A + G G+ EA + L + P AR +
Sbjct: 66 VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116
Score = 27.0 bits (60), Expect = 9.2
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 518
+ A + F + +K A + G G+ EA + L + P
Sbjct: 56 QLAEAQFRDLVSRYPTHDKA----AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111
Query: 519 ARAQR 523
AR +
Sbjct: 112 ARVAQ 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane
protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Length = 225
Score = 29.9 bits (68), Expect = 1.8
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQ---IYCLF--GQYEEALRNLDKTIALNPN 203
++ +A L+ + P Y Q+ Q IY + A +D+ I LNP
Sbjct: 17 DGNWRQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73
Score = 29.9 bits (68), Expect = 1.8
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 462 ASDFTKAFADLDEAEKVDPNVADSYYQRGQ---IYCLF--GQYEEALRNLDKTIALNPN 515
++ +A L+ + P Y Q+ Q IY + A +D+ I LNP
Sbjct: 17 DGNWRQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF--TSQSTKA 117
+ + + A + EI + + A ++ +
Sbjct: 171 NGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDW 230
Query: 118 IEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA 158
IE L VE+ + I + + + A D +
Sbjct: 231 IEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG 271
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 21/88 (23%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP----------NVADSYY 487
+ E + + + + + +A +A +YY
Sbjct: 8 GRLRHSSPQEAF----ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY 63
Query: 488 QRGQIYCLFGQYEEALRNLDKTIALNPN 515
Q + Y A ++ I +
Sbjct: 64 QNKE-------YLLAASEYERFIQIYQI 84
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 29.3 bits (65), Expect = 2.6
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
R L L+ GN+D A+ +K +E L + +G A +
Sbjct: 10 IRFDLALEY-GNLDAALDEAKKLNDSIT-----WERLIQEALAQGNASLAEMIYQT---- 59
Query: 344 ARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQN 382
+LS +Y + K+ ++ N
Sbjct: 60 QHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLN 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 29.8 bits (66), Expect = 2.8
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
A+ L +D+ E F R ++ N L++ + + + ++ E +
Sbjct: 20 HARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78
Query: 311 KSCMFAY-------ETLGTIEVQRGRLEEAVKCFNKAL 341
++ +Y E G IE ++ R+E+ + +AL
Sbjct: 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL 116
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.5 bits (66), Expect = 3.7
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 17/144 (11%)
Query: 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSND 431
+ V + K L + D I + + + + Q+ + L S D
Sbjct: 42 VTVLVKKNANQEKMANMQWAKDLEADCDCKI-------EWQEVTREAWAQQKNATLASGD 94
Query: 432 Y-EIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQR- 489
++ E Y G S ++ K P+
Sbjct: 95 IADVNLNGYG----AVEAYQY----PGMFEDLSKDLDKLPNVKAFFKQKPDAKKMSTDSK 146
Query: 490 GQIYCLFGQYEEALRNLDKTIALN 513
G+IY + +A + + +N
Sbjct: 147 GRIYAIADGRGKAYSGTGQHMLIN 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 29.1 bits (64), Expect = 3.7
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 11/129 (8%)
Query: 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283
+E + S + + + + +E + E E + V + +
Sbjct: 292 KEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVL 351
Query: 284 H---RAMLMLQARGNVDEAIKLIEKAISIDKSCM--------FAYETLGTIEVQRGRLEE 332
A +L +EA + + A G G +E
Sbjct: 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEV 411
Query: 333 AVKCFNKAL 341
KA
Sbjct: 412 GHGMICKAY 420
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 29.0 bits (64), Expect = 4.0
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 16/171 (9%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
L+ TK +L+ K N Y + G +++L + I +
Sbjct: 76 LYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT 135
Query: 207 ARAQRHFV-VHKMIVPGDRERVEQSLKEFRNFV----DTHSNVVEACTLFAQVLVD---- 257
+ V + V + F N+ DT S E A+ +
Sbjct: 136 TELLLLAIEVALLN-----NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN 190
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308
+E Y+ + P + + + Q N+ EA ++E +S
Sbjct: 191 KETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQ--RNIAEAQGIVELLLS 239
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor
protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB:
2ios_A 2iol_A
Length = 152
Score = 27.9 bits (62), Expect = 4.7
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 51 LTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF 110
L +GD +E+ E L F HE AI E ++ L + L + I
Sbjct: 20 LLSGDISEA-EHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78
Query: 111 TSQSTKAIEDLTQLVEDTSVD-PKIKVNAHIKRAVVHLHAASDFTKAFADL 160
Q + E + + D ++D P + ++R V A +K DL
Sbjct: 79 IDQMKRGYERIYNEIPDINLDVPHSY--SVLERFVEECFQAGIISKQLRDL 127
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 28.8 bits (64), Expect = 5.7
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 22/151 (14%)
Query: 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348
M N+ +AI L KA DK+ G EEA++ + A+
Sbjct: 1 MASTNTNLQKAIDLASKAAQEDKA---------------GNYEEALQLYQHAV------Q 39
Query: 349 ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKG 408
H+ + K R + + + +K K + + P D+
Sbjct: 40 YFLHVVKYEAQG-DKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEK 98
Query: 409 GKTVVMDKADYTQKMTSILNSNDYEIIPGDP 439
G + + + N I+ P
Sbjct: 99 GNDSDGEAESDDPEKKKLQNQLQGAIVIERP 129
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 28.3 bits (64), Expect = 6.3
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 28/94 (29%)
Query: 114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFT---KAF---ADLDE-AEKV 166
+ K + D S D R V+ T A+ D +
Sbjct: 49 TGKTHREFPDAFYDISRDRDN-------RVVI-------LTGSGDAWMAEIDFPSLGDVT 94
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDK-TIA 199
+P D Y G+ + + L +++ I+
Sbjct: 95 NPREWDKTYWEGK------KVLQNLLDIEVPVIS 122
>2zu6_B Programmed cell death protein 4; protein-protein complex,
ATP-binding, helicase, hydrolase, initiation factor,
nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Length = 307
Score = 27.7 bits (61), Expect = 9.1
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 51 LTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIF 110
L +GD +E+ E L F HE AI E ++ L + L + I
Sbjct: 177 LLSGDISEA-EHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235
Query: 111 TSQSTKAIEDLTQLVEDTSVD-PKIKVNAHIKRAVVHLHAASDFTKAFADL 160
Q + E + + D ++D P + ++R V A +K DL
Sbjct: 236 VDQMKRGYERIYNEIPDINLDVPHSY--SVLERFVEECFQAGIISKQLRDL 284
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 27.1 bits (60), Expect = 9.8
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 378 PRSQNITKNEKLAIKQLRENN-DIIIRPADKGGKTVVMDKAD 418
P +N E + LR + D +IR + G V++ K
Sbjct: 15 PLFKNFNVTE--SENYLRSSTDDFLIRKGSRHGYCVLVIKFA 54
>3tyg_A Envelope glycoprotein GP160; GP120, HIV-1, ENV, FAB, HIV-1
neutralizing antibody, immune viral protein; HET: NAG
BMA MAN; 3.25A {Human immunodeficiency virus 1}
Length = 199
Score = 27.4 bits (61), Expect = 9.9
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 16/43 (37%)
Query: 379 RSQNITKNEKLAIKQLRE----------NN----DII--IRPA 405
RS N T N K QL NN +II IR A
Sbjct: 76 RSVNFTDNAKSICVQLNTSVEINCTRPNNNTRPGEIIGDIRQA 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,574,235
Number of extensions: 540511
Number of successful extensions: 3245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2198
Number of HSP's successfully gapped: 840
Length of query: 551
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 453
Effective length of database: 3,965,535
Effective search space: 1796387355
Effective search space used: 1796387355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)