Query psy12714
Match_columns 117
No_of_seqs 136 out of 1014
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 17:50:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8y_A Eplin protein; LIM doma 99.8 8.6E-21 2.9E-25 115.1 7.6 78 30-107 13-90 (91)
2 2cu8_A Cysteine-rich protein 2 99.8 4.7E-19 1.6E-23 104.0 5.5 68 28-95 5-73 (76)
3 1x64_A Alpha-actinin-2 associa 99.8 1.2E-18 4.2E-23 105.1 7.5 66 29-95 22-87 (89)
4 2dar_A PDZ and LIM domain prot 99.8 5.8E-19 2E-23 106.8 5.9 66 29-95 22-87 (90)
5 2cup_A Skeletal muscle LIM-pro 99.8 7.1E-19 2.4E-23 108.2 5.7 66 30-95 3-69 (101)
6 2dj7_A Actin-binding LIM prote 99.8 1.8E-18 6.1E-23 102.6 6.3 65 30-95 13-77 (80)
7 1a7i_A QCRP2 (LIM1); LIM domai 99.7 8.3E-19 2.8E-23 104.1 3.8 67 29-95 4-70 (81)
8 1nyp_A Pinch protein; LIM doma 99.7 2.1E-18 7.1E-23 98.6 5.0 64 30-94 3-66 (66)
9 2xqn_T Testin, TESS; metal-bin 99.7 2.2E-18 7.4E-23 110.0 5.6 65 31-95 2-66 (126)
10 1wyh_A SLIM 2, skeletal muscle 99.7 3.6E-18 1.2E-22 99.0 5.4 66 30-95 3-69 (72)
11 1x4k_A Skeletal muscle LIM-pro 99.7 4.5E-18 1.5E-22 98.6 5.6 66 30-95 3-69 (72)
12 2d8z_A Four and A half LIM dom 99.7 4.9E-18 1.7E-22 98.0 5.7 65 30-95 3-67 (70)
13 2cur_A Skeletal muscle LIM-pro 99.7 4.7E-18 1.6E-22 97.9 5.5 65 30-95 3-67 (69)
14 1x62_A C-terminal LIM domain p 99.7 4.2E-18 1.4E-22 100.6 5.4 65 30-95 13-77 (79)
15 1g47_A Pinch protein; LIM doma 99.7 7.1E-18 2.4E-22 99.0 5.6 68 29-96 8-76 (77)
16 1iml_A CRIP, cysteine rich int 99.7 5.1E-18 1.7E-22 99.5 4.9 63 33-95 1-64 (76)
17 1x68_A FHL5 protein; four-and- 99.7 2.3E-18 8E-23 101.0 3.4 70 30-99 3-75 (76)
18 1x4l_A Skeletal muscle LIM-pro 99.7 1.2E-17 4.2E-22 96.9 5.4 66 30-95 3-71 (72)
19 1j2o_A FLIN2, fusion of rhombo 99.7 2.7E-17 9.3E-22 103.4 7.2 65 31-95 2-68 (114)
20 1x3h_A Leupaxin; paxillin fami 99.7 3E-17 1E-21 97.0 5.8 65 30-95 13-77 (80)
21 2d8x_A Protein pinch; LIM doma 99.7 3.8E-17 1.3E-21 94.3 6.1 65 30-95 3-67 (70)
22 1x63_A Skeletal muscle LIM-pro 99.7 3.6E-17 1.2E-21 97.0 5.8 67 30-96 13-80 (82)
23 2l4z_A DNA endonuclease RBBP8, 99.7 5.3E-17 1.8E-21 103.5 6.9 64 29-92 58-123 (123)
24 2xjy_A Rhombotin-2; oncoprotei 99.7 3.3E-17 1.1E-21 105.0 5.3 64 32-95 2-69 (131)
25 2dlo_A Thyroid receptor-intera 99.7 6.3E-17 2.2E-21 95.9 5.3 65 30-95 13-78 (81)
26 2cuq_A Four and A half LIM dom 99.7 7.1E-17 2.4E-21 95.3 5.6 66 30-96 13-78 (80)
27 2jtn_A LIM domain-binding prot 99.7 9.1E-17 3.1E-21 108.4 6.6 66 29-95 57-122 (182)
28 2co8_A NEDD9 interacting prote 99.7 2.8E-17 9.4E-22 97.8 3.5 66 29-94 12-79 (82)
29 2ehe_A Four and A half LIM dom 99.7 3E-17 1E-21 97.4 2.8 67 29-95 12-79 (82)
30 2rgt_A Fusion of LIM/homeobox 99.7 1E-16 3.6E-21 107.0 5.7 64 31-95 5-68 (169)
31 2cor_A Pinch protein; LIM doma 99.7 1.8E-16 6.1E-21 93.7 5.8 65 29-95 12-76 (79)
32 1x61_A Thyroid receptor intera 99.6 1.5E-16 5.2E-21 92.2 5.1 64 30-93 3-67 (72)
33 1rut_X Flinc4, fusion protein 99.6 6.4E-17 2.2E-21 109.7 3.8 81 30-110 3-98 (188)
34 1m3v_A FLIN4, fusion of the LI 99.6 1E-16 3.4E-21 101.9 4.4 66 30-95 3-72 (122)
35 3f6q_B LIM and senescent cell 99.6 1.8E-16 6.2E-21 91.5 4.8 63 30-92 9-72 (72)
36 1b8t_A Protein (CRP1); LIM dom 99.6 3.7E-16 1.3E-20 106.2 6.6 81 31-111 6-87 (192)
37 1wig_A KIAA1808 protein; LIM d 99.6 4.4E-16 1.5E-20 90.6 4.3 65 30-95 3-68 (73)
38 1x6a_A LIMK-2, LIM domain kina 99.6 1.4E-15 4.9E-20 89.9 5.2 66 29-95 12-79 (81)
39 1b8t_A Protein (CRP1); LIM dom 99.6 2.2E-15 7.4E-20 102.4 6.4 65 32-96 115-179 (192)
40 2egq_A FHL1 protein; LIM domai 99.6 2.7E-15 9.1E-20 87.9 5.0 60 30-89 13-76 (77)
41 2l3k_A Rhombotin-2, linker, LI 99.6 7.6E-16 2.6E-20 98.0 2.5 70 33-102 9-80 (123)
42 2iyb_E Testin, TESS, TES; LIM 99.5 3.3E-15 1.1E-19 85.0 4.1 59 32-90 2-64 (65)
43 1v6g_A Actin binding LIM prote 99.4 1.1E-13 3.7E-18 81.8 3.9 65 30-95 13-78 (81)
44 2xjy_A Rhombotin-2; oncoprotei 99.3 2.2E-13 7.6E-18 87.0 2.1 61 34-94 68-130 (131)
45 1rut_X Flinc4, fusion protein 99.3 9.9E-13 3.4E-17 89.0 2.6 62 34-95 71-134 (188)
46 2xqn_T Testin, TESS; metal-bin 99.2 4.9E-12 1.7E-16 80.3 3.7 61 31-91 62-125 (126)
47 2rgt_A Fusion of LIM/homeobox 99.1 2.4E-11 8.3E-16 80.8 4.0 65 30-94 63-130 (169)
48 2jtn_A LIM domain-binding prot 99.1 8.8E-11 3E-15 78.9 4.5 61 30-90 117-180 (182)
49 1zfo_A LAsp-1; LIM domain, zin 98.5 3.4E-08 1.2E-12 47.9 0.9 29 32-60 3-31 (31)
50 2cup_A Skeletal muscle LIM-pro 98.2 9.8E-07 3.4E-11 53.4 2.8 38 29-66 63-101 (101)
51 1m3v_A FLIN4, fusion of the LI 97.2 6.9E-05 2.3E-09 46.9 0.8 62 34-95 34-118 (122)
52 2ehe_A Four and A half LIM dom 97.0 9.4E-05 3.2E-09 42.9 -0.1 18 78-95 1-18 (82)
53 2cuq_A Four and A half LIM dom 96.9 0.00012 4.3E-09 42.1 -0.1 18 78-95 1-18 (80)
54 1x6a_A LIMK-2, LIM domain kina 96.9 0.00014 4.8E-09 42.0 0.0 17 79-95 2-18 (81)
55 1x3h_A Leupaxin; paxillin fami 96.8 0.00015 5.2E-09 41.7 -0.6 17 79-95 2-18 (80)
56 1v6g_A Actin binding LIM prote 96.7 0.00028 9.7E-09 40.7 0.4 17 79-95 2-18 (81)
57 2egq_A FHL1 protein; LIM domai 96.5 0.00026 8.8E-09 40.4 -0.9 17 79-95 2-18 (77)
58 1x63_A Skeletal muscle LIM-pro 96.4 0.00042 1.4E-08 40.0 -0.5 17 79-95 2-18 (82)
59 2dlo_A Thyroid receptor-intera 96.1 0.00076 2.6E-08 38.8 -0.4 26 61-87 17-42 (81)
60 1j2o_A FLIN2, fusion of rhombo 95.2 0.0029 9.8E-08 38.9 -0.2 63 33-95 31-110 (114)
61 2cs3_A Protein C14ORF4, MY039 77.6 1.6 5.6E-05 25.2 2.3 51 29-84 12-62 (93)
62 1jjd_A Metallothionein, SMTA; 71.4 3.2 0.00011 22.1 2.3 29 61-89 9-38 (55)
63 2ct0_A Non-SMC element 1 homol 69.4 2.3 7.8E-05 23.9 1.6 34 27-60 10-43 (74)
64 2gvi_A Conserved hypothetical 67.2 2.3 7.8E-05 28.6 1.5 29 61-89 174-202 (204)
65 2eqg_A Tumor necrosis factor, 65.0 4.5 0.00015 20.4 2.0 16 76-91 24-39 (49)
66 3nw0_A Non-structural maintena 59.3 3.1 0.00011 28.6 1.1 30 31-60 179-208 (238)
67 1wfp_A Zinc finger (AN1-like) 56.5 21 0.00073 20.0 4.0 15 29-43 22-36 (74)
68 2yql_A PHD finger protein 21A; 56.2 19 0.00066 18.5 3.9 47 29-87 6-54 (56)
69 2k16_A Transcription initiatio 51.3 6.2 0.00021 21.7 1.3 53 29-90 15-69 (75)
70 1weo_A Cellulose synthase, cat 50.1 21 0.0007 20.9 3.3 22 30-55 14-35 (93)
71 1f62_A Transcription factor WS 48.6 6.1 0.00021 20.0 0.9 27 34-60 2-30 (51)
72 2yt5_A Metal-response element- 48.5 29 0.001 18.3 3.9 54 31-90 5-62 (66)
73 1x4j_A Ring finger protein 38; 48.4 9.2 0.00031 20.7 1.7 31 30-60 21-53 (75)
74 2ku3_A Bromodomain-containing 46.3 24 0.00081 19.4 3.2 52 29-91 13-68 (71)
75 2puy_A PHD finger protein 21A; 45.8 32 0.0011 17.9 3.7 47 32-90 5-53 (60)
76 2d8v_A Zinc finger FYVE domain 44.2 9.1 0.00031 21.1 1.1 15 77-91 25-39 (67)
77 2e5r_A Dystrobrevin alpha; ZZ 43.4 27 0.00092 18.7 3.0 34 54-89 8-44 (63)
78 2kwj_A Zinc finger protein DPF 42.7 30 0.001 20.6 3.5 9 79-87 98-106 (114)
79 2ysm_A Myeloid/lymphoid or mix 42.2 19 0.00066 21.2 2.6 9 79-87 94-102 (111)
80 2dmj_A Poly (ADP-ribose) polym 41.5 6.9 0.00024 23.4 0.4 18 29-46 22-39 (106)
81 2ect_A Ring finger protein 126 40.4 42 0.0015 17.9 3.7 31 30-60 13-45 (78)
82 1v9x_A Poly (ADP-ribose) polym 39.7 9.2 0.00031 23.3 0.8 18 29-46 17-34 (114)
83 1wev_A Riken cDNA 1110020M19; 37.8 45 0.0015 18.9 3.6 53 32-89 16-72 (88)
84 2l43_A N-teminal domain from h 36.9 36 0.0012 19.4 3.1 50 30-90 23-76 (88)
85 1fp0_A KAP-1 corepressor; PHD 36.8 41 0.0014 19.4 3.3 48 28-87 21-70 (88)
86 1wen_A Inhibitor of growth fam 36.6 43 0.0015 18.3 3.2 46 30-88 14-64 (71)
87 2vut_I AREA, nitrogen regulato 36.1 29 0.00098 17.2 2.2 27 62-88 4-30 (43)
88 2ea6_A Ring finger protein 4; 35.4 16 0.00053 19.0 1.2 13 31-43 14-26 (69)
89 1xwh_A Autoimmune regulator; P 34.8 54 0.0018 17.4 4.4 48 31-90 7-56 (66)
90 2e6r_A Jumonji/ARID domain-con 34.6 66 0.0023 18.4 7.3 51 32-91 16-68 (92)
91 1uw0_A DNA ligase III; DNA rep 33.9 14 0.00049 22.4 1.0 18 29-46 12-29 (117)
92 2lri_C Autoimmune regulator; Z 33.7 30 0.001 18.7 2.2 44 32-87 12-57 (66)
93 1chc_A Equine herpes virus-1 r 33.0 13 0.00045 19.4 0.7 11 32-42 5-15 (68)
94 1wfl_A Zinc finger protein 216 32.8 43 0.0015 18.7 2.8 14 29-42 22-35 (74)
95 1wff_A Riken cDNA 2810002D23 p 32.3 47 0.0016 19.1 3.0 16 28-43 21-36 (85)
96 2vnf_A ING 4, P29ING4, inhibit 30.4 43 0.0015 17.5 2.5 44 32-88 10-58 (60)
97 4gat_A Nitrogen regulatory pro 29.7 41 0.0014 18.3 2.4 27 61-87 11-37 (66)
98 3c6w_A P28ING5, inhibitor of g 29.7 41 0.0014 17.6 2.3 44 32-88 9-57 (59)
99 2lo3_A SAGA-associated factor 29.2 14 0.00047 18.5 0.3 14 32-45 17-30 (44)
100 1weu_A Inhibitor of growth fam 28.3 90 0.0031 18.0 4.1 45 31-88 35-84 (91)
101 2lbz_A Thuricin17, thurincin H 27.9 20 0.0007 16.0 0.7 14 57-70 5-18 (31)
102 3d00_A Tungsten formylmethanof 27.9 14 0.00049 24.4 0.3 24 60-89 164-187 (191)
103 2ep4_A Ring finger protein 24; 27.8 61 0.0021 17.0 2.9 29 32-60 15-45 (74)
104 3dfx_A Trans-acting T-cell-spe 27.3 43 0.0015 18.0 2.1 26 62-87 10-35 (63)
105 1gnf_A Transcription factor GA 27.1 40 0.0014 16.9 1.9 26 62-87 7-32 (46)
106 3od8_A Poly [ADP-ribose] polym 26.7 13 0.00045 22.7 -0.1 18 29-46 35-52 (116)
107 2yu4_A E3 SUMO-protein ligase 25.7 48 0.0016 18.7 2.3 31 60-91 8-39 (94)
108 2das_A Zinc finger MYM-type pr 25.4 44 0.0015 17.9 1.9 10 34-43 22-31 (62)
109 2xeu_A Ring finger protein 4; 24.8 17 0.00056 18.6 0.1 9 34-42 5-13 (64)
110 2cs2_A Poly [ADP-ribose] polym 24.5 22 0.00076 22.2 0.7 18 29-46 24-41 (134)
111 3ng2_A RNF4, snurf, ring finge 23.9 16 0.00053 19.2 -0.1 12 32-43 10-21 (71)
112 1wfh_A Zinc finger (AN1-like) 23.8 34 0.0012 18.6 1.2 14 29-42 12-25 (64)
113 2kiz_A E3 ubiquitin-protein li 23.6 72 0.0025 16.4 2.7 31 30-60 12-44 (69)
114 1t1h_A Gspef-atpub14, armadill 23.4 72 0.0025 16.9 2.7 32 60-92 9-40 (78)
115 1x4w_A Hypothetical protein FL 23.2 66 0.0022 17.6 2.4 15 29-43 12-26 (67)
116 2ecl_A Ring-box protein 2; RNF 23.0 53 0.0018 17.9 2.1 13 31-43 14-26 (81)
117 2g6q_A Inhibitor of growth pro 22.7 65 0.0022 17.0 2.3 44 32-88 11-59 (62)
118 2vpb_A Hpygo1, pygopus homolog 22.4 29 0.00098 18.7 0.8 29 31-59 7-39 (65)
119 2e6s_A E3 ubiquitin-protein li 22.2 49 0.0017 18.4 1.8 27 34-60 28-56 (77)
120 1znf_A 31ST zinc finger from X 22.0 41 0.0014 12.9 1.2 11 60-70 2-12 (27)
121 2hf1_A Tetraacyldisaccharide-1 21.6 33 0.0011 18.7 1.0 9 34-42 10-18 (68)
122 2jny_A Uncharacterized BCR; st 21.4 34 0.0011 18.7 1.0 7 34-40 12-18 (67)
123 2ds5_A CLPX, ATP-dependent CLP 21.1 77 0.0026 16.2 2.3 27 61-87 13-40 (51)
124 2d8t_A Dactylidin, ring finger 21.1 1E+02 0.0034 16.0 3.0 11 32-42 15-25 (71)
125 2js4_A UPF0434 protein BB2007; 21.0 32 0.0011 18.9 0.8 9 34-42 10-18 (70)
126 2jr6_A UPF0434 protein NMA0874 21.0 36 0.0012 18.6 1.0 9 34-42 10-18 (68)
127 2dip_A Zinc finger SWIM domain 20.7 1.3E+02 0.0045 17.5 3.6 35 55-90 28-65 (98)
128 1ard_A Yeast transcription fac 20.6 44 0.0015 13.0 1.2 12 60-71 3-14 (29)
129 1wg2_A Zinc finger (AN1-like) 20.6 34 0.0012 18.6 0.9 14 29-42 12-25 (64)
130 3o36_A Transcription intermedi 20.1 75 0.0025 20.4 2.6 25 33-60 5-31 (184)
131 2ro1_A Transcription intermedi 20.1 39 0.0013 22.1 1.2 25 33-60 3-29 (189)
No 1
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=8.6e-21 Score=115.10 Aligned_cols=78 Identities=45% Similarity=1.021 Sum_probs=72.4
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCccccccCccccc
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGNYDEGFGSDQHK 107 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~~~~~~~~~~~~ 107 (117)
....+|..|++.|...+.+.+.++.||..||+|..|..+|....|+.+++.+||+.||.++|+++|.|.+++|..+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~~ 90 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPSS 90 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCCC
Confidence 346799999999987788899999999999999999999998889999999999999999999999999999998774
No 2
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=4.7e-19 Score=103.97 Aligned_cols=68 Identities=31% Similarity=0.654 Sum_probs=63.3
Q ss_pred CCcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccH-HHHHhhhCCCC
Q psy12714 28 TGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCL-PHFKQLFISRG 95 (117)
Q Consensus 28 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~-~~y~~~~~~kc 95 (117)
+....++|..|+++|..++.+.+.++.||+.||+|..|+++|....|+.+++.+||. .||.++|+|+|
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhccccc
Confidence 456678999999999878889999999999999999999999988899999999999 79999999998
No 3
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.2e-18 Score=105.13 Aligned_cols=66 Identities=24% Similarity=0.535 Sum_probs=60.7
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
.....+|..|++.|.. +.+.+.++.||..||+|..|++.|....|+.+++.+||+.||.++|++|+
T Consensus 22 ~~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CCSCCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CCcCCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 4556799999999975 66889999999999999999999998889999999999999999999997
No 4
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=5.8e-19 Score=106.76 Aligned_cols=66 Identities=24% Similarity=0.563 Sum_probs=61.2
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|++.|. ++.+.+.++.||+.||+|..|++.|....|+.+++.+||..||.++|+|+|
T Consensus 22 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 22 GKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp TTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCC
T ss_pred CCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCC
Confidence 456789999999995 677889999999999999999999998888889999999999999999999
No 5
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.76 E-value=7.1e-19 Score=108.24 Aligned_cols=66 Identities=21% Similarity=0.517 Sum_probs=60.7
Q ss_pred ccccccccccccccc-CccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYP-LEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|.. ++.+.++++.||..||+|..|+++|....|+.+++++||+.||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C 69 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKC 69 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCcc
Confidence 456799999999974 677889999999999999999999988889999999999999999999998
No 6
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.8e-18 Score=102.62 Aligned_cols=65 Identities=25% Similarity=0.567 Sum_probs=60.2
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|++.|+.++.+.++++.||+.||+|..|+.+|.. .|+.+++++||+.||.++|+++|
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C 77 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCC
Confidence 346799999999987888999999999999999999999975 68889999999999999999999
No 7
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.74 E-value=8.3e-19 Score=104.08 Aligned_cols=67 Identities=28% Similarity=0.698 Sum_probs=57.5
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|+++|...+.+.+.++.||+.||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 70 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKG 70 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcc
Confidence 3456899999999987888899999999999999999999998889999999999999999999999
No 8
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.74 E-value=2.1e-18 Score=98.58 Aligned_cols=64 Identities=25% Similarity=0.461 Sum_probs=59.1
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISR 94 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~k 94 (117)
...++|.+|+++|. ++.+.+.++.||..||+|..|+.+|....|+.+++.+||+.||.++|+||
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 45679999999997 67788999999999999999999999888999999999999999999986
No 9
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=109.98 Aligned_cols=65 Identities=22% Similarity=0.456 Sum_probs=60.8
Q ss_pred ccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
..++|.+|++.|..++.+.++++.||+.||+|..|+++|....|+.++|.+||..||.++|+++|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C 66 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVC 66 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBC
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccC
Confidence 45799999999987777899999999999999999999998888899999999999999999998
No 10
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.6e-18 Score=99.01 Aligned_cols=66 Identities=35% Similarity=0.713 Sum_probs=60.6
Q ss_pred cccccccccccccccC-ccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPL-EKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|... +.+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcC
Confidence 4567999999999874 66789999999999999999999998888899999999999999999999
No 11
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.5e-18 Score=98.61 Aligned_cols=66 Identities=27% Similarity=0.644 Sum_probs=60.7
Q ss_pred cccccccccccccccC-ccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPL-EKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|++.|... ..+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCC
Confidence 4567999999999875 46789999999999999999999998889999999999999999999999
No 12
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.9e-18 Score=98.01 Aligned_cols=65 Identities=29% Similarity=0.602 Sum_probs=60.0
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|. ++.+.+.++.||+.||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 45679999999996 466899999999999999999999988889899999999999999999998
No 13
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.7e-18 Score=97.86 Aligned_cols=65 Identities=26% Similarity=0.571 Sum_probs=60.1
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|. ++.+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 67 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCC
Confidence 45679999999996 467899999999999999999999998888899999999999999999998
No 14
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.2e-18 Score=100.63 Aligned_cols=65 Identities=18% Similarity=0.442 Sum_probs=59.8
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....+|..|++.|.. +.+.+.++.||..||+|..|++.|....|+.+++.+||+.||.++|+|++
T Consensus 13 ~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 456799999999975 67899999999999999999999988789999999999999999999987
No 15
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=7.1e-18 Score=98.97 Aligned_cols=68 Identities=29% Similarity=0.611 Sum_probs=59.8
Q ss_pred CcccccccccccccccCcc-EEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCc
Q psy12714 29 GNPSSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN 96 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~ 96 (117)
.....+|.+|+++|...+. +.+.++.||..||+|..|+++|..+.|+.++|.+||+.||.++|+++|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 3456799999999986554 5799999999999999999999988899999999999999999999994
No 16
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=5.1e-18 Score=99.52 Aligned_cols=63 Identities=32% Similarity=0.761 Sum_probs=59.4
Q ss_pred ccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccH-HHHHhhhCCCC
Q psy12714 33 SLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCL-PHFKQLFISRG 95 (117)
Q Consensus 33 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~-~~y~~~~~~kc 95 (117)
++|..|+++|..++.+.+.++.||..||+|..|+.+|....|+.+++.+||. .||.++|+++|
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccC
Confidence 4799999999878889999999999999999999999988899999999999 69999999999
No 17
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.3e-18 Score=101.01 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=62.6
Q ss_pred ccccccccccccccc---CccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCcccc
Q psy12714 30 NPSSLCFACNKKVYP---LEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGNYDE 99 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~~~~ 99 (117)
...++|..|+++|.. .+.+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|....
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 456899999999973 3678899999999999999999999988899999999999999999999995443
No 18
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.2e-17 Score=96.87 Aligned_cols=66 Identities=20% Similarity=0.423 Sum_probs=59.5
Q ss_pred ccccccccccccccc---CccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYP---LEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|.. .+.+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 456799999999974 366789999999999999999999998888889999999999999999976
No 19
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=2.7e-17 Score=103.43 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=59.5
Q ss_pred ccccccccccccccCccEEeCCCcccccCcccccCCccccC--CCccccCCeeccHHHHHhhhCCCC
Q psy12714 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
..++|.+|+++|...+.+.+.++.||+.||+|..|+.+|.. ..|+.+++.+||+.||.++|+++|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCC
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCccc
Confidence 35789999999987767899999999999999999999975 578899999999999999999997
No 20
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3e-17 Score=96.97 Aligned_cols=65 Identities=25% Similarity=0.480 Sum_probs=60.2
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
...++|..|+++|.. +.+.+.++.||..||+|..|+++|....++.+++.+||+.||.++|+++|
T Consensus 13 ~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C 77 (80)
T 1x3h_A 13 MFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77 (80)
T ss_dssp CCSCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSC
T ss_pred hcCCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCC
Confidence 446799999999975 67899999999999999999999998889999999999999999999999
No 21
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.8e-17 Score=94.26 Aligned_cols=65 Identities=28% Similarity=0.484 Sum_probs=59.4
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
.+..+|..|++.|. ++.+.+.++.||+.||+|..|+.+|....|+.+++.+||..||.++|+++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 45679999999997 567899999999999999999999998888889999999999999999875
No 22
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.6e-17 Score=97.03 Aligned_cols=67 Identities=25% Similarity=0.618 Sum_probs=60.8
Q ss_pred cccccccccccccccCcc-EEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCc
Q psy12714 30 NPSSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN 96 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~ 96 (117)
...++|..|++.|..++. +.+.++.||..||+|..|+++|....|+.+++.+||..||.++|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 446799999999986554 7899999999999999999999988899999999999999999999984
No 23
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=103.50 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=57.4
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCcccc--CCCccccCCeeccHHHHHhhhC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLR--MESYTMNNGHLYCLPHFKQLFI 92 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~~C~~~y~~~~~ 92 (117)
....++|.+|+++|+..+.+.+.++.||..||+|..|+..|. ...|+.+++.+||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 445789999999998776789999999999999999999997 3578899999999999999986
No 24
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.68 E-value=3.3e-17 Score=105.03 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=57.9
Q ss_pred cccccccccccccCccEEeCCCcccccCcccccCCccccC--CCccccCCeeccHHHHHhhhCC--CC
Q psy12714 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFKQLFIS--RG 95 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~~y~~~~~~--kc 95 (117)
.++|..|+++|...+.+.++++.||+.||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C 69 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLC 69 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEEC
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccCh
Confidence 4689999999987666889999999999999999999963 5788999999999999999999 76
No 25
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.3e-17 Score=95.87 Aligned_cols=65 Identities=23% Similarity=0.567 Sum_probs=58.6
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCcccc-CCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMN-NGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~~C~~~y~~~~~~kc 95 (117)
....+|..|+++|. ++.+.+.++.||+.||+|..|+++|....|+.. ++.+||..||.++|+++|
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 46789999999997 467899999999999999999999987767665 789999999999999999
No 26
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.1e-17 Score=95.34 Aligned_cols=66 Identities=27% Similarity=0.573 Sum_probs=60.3
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCc
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN 96 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~ 96 (117)
...++|..|+++|.. +.+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|.
T Consensus 13 ~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 13 KFAPRCARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CSSCCCTTTCCCCCS-CCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred ccCCcCCCCCCEecC-cEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 456799999999964 578999999999999999999999887888999999999999999999983
No 27
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.67 E-value=9.1e-17 Score=108.40 Aligned_cols=66 Identities=17% Similarity=0.466 Sum_probs=59.5
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|+++|...+.+.+.++.||+.||+|..|+++|.... +.++|.+||..||.++|+++|
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC 122 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKC 122 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCcccccccccc
Confidence 455689999999998766678999999999999999999998765 578999999999999999998
No 28
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2.8e-17 Score=97.84 Aligned_cols=66 Identities=36% Similarity=0.841 Sum_probs=58.6
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCcc--ccCCeeccHHHHHhhhCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYT--MNNGHLYCLPHFKQLFISR 94 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~--~~~g~~~C~~~y~~~~~~k 94 (117)
.....+|.+|++.|+..+.+.++++.||..||+|..|++.|....|+ .+++++||+.||.++|++-
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 44567999999999888888899999999999999999999988877 4799999999999888763
No 29
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=97.44 Aligned_cols=67 Identities=24% Similarity=0.526 Sum_probs=60.1
Q ss_pred Cccccccccccccccc-CccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYP-LEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|+++|.. ...+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+++|
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 12 NTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSS
T ss_pred cccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCC
Confidence 3456799999999974 455678999999999999999999998888899999999999999999998
No 30
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.66 E-value=1e-16 Score=106.97 Aligned_cols=64 Identities=17% Similarity=0.490 Sum_probs=57.4
Q ss_pred ccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
..++|..|+++|...+.+.++++.||..||+|..|+.+|.... +.++|.+||+.||.++|+++|
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C 68 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKC 68 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBC
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccc
Confidence 3579999999998776788999999999999999999998765 578999999999999999998
No 31
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.8e-16 Score=93.67 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=58.2
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|++.|. ++.+.+.++.||..||+|..|+.+|... ++.+++.+||..||.++|+|++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSS
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCC
Confidence 445689999999997 6678899999999999999999999876 5588999999999999999976
No 32
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.5e-16 Score=92.15 Aligned_cols=64 Identities=25% Similarity=0.472 Sum_probs=57.3
Q ss_pred cccccccccccccccC-ccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCC
Q psy12714 30 NPSSLCFACNKKVYPL-EKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFIS 93 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~ 93 (117)
...++|.+|+++|... ..+.+.++.||..||+|..|+++|....|+.+++.+||..||.++|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4567999999999864 468899999999999999999999887899999999999999999853
No 33
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.65 E-value=6.4e-17 Score=109.72 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=66.2
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccC--CCccccCCeeccHHHHHhhhCC--CC----c-----
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFKQLFIS--RG----N----- 96 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~~C~~~y~~~~~~--kc----~----- 96 (117)
...++|..|++.|...+.+.++++.||..||+|..|+.+|.. ..|+.+++.+||+.||.++|++ +| .
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 346799999999986666889999999999999999999985 5788999999999999999999 56 2
Q ss_pred --cccccCccccccCC
Q psy12714 97 --YDEGFGSDQHKRKW 110 (117)
Q Consensus 97 --~~~~~~~~~~~~~~ 110 (117)
++.+.+..||.+.|
T Consensus 83 e~~i~a~~~~~H~~CF 98 (188)
T 1rut_X 83 ELVMRAQGNVYHLKCF 98 (188)
T ss_dssp SEEEEETTEEECGGGC
T ss_pred cEEEEcCCCEEeCCCC
Confidence 23344556665554
No 34
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1e-16 Score=101.93 Aligned_cols=66 Identities=21% Similarity=0.434 Sum_probs=60.1
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCcccc--CCCccccCCeeccHHHHHhhhCC--CC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLR--MESYTMNNGHLYCLPHFKQLFIS--RG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~~C~~~y~~~~~~--kc 95 (117)
...++|..|++.|...+.+.+.++.||+.||+|..|+.+|. ...|+.+++.+||..||.++|++ +|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C 72 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAG 72 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSS
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCcc
Confidence 45679999999998777789999999999999999999997 35788899999999999999999 87
No 35
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.64 E-value=1.8e-16 Score=91.52 Aligned_cols=63 Identities=32% Similarity=0.722 Sum_probs=56.9
Q ss_pred cccccccccccccccCcc-EEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhC
Q psy12714 30 NPSSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFI 92 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~ 92 (117)
....+|.+|+++|...+. +.+.++.||..||+|..|+++|..+.|+.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 456799999999987775 479999999999999999999988888899999999999999885
No 36
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.64 E-value=3.7e-16 Score=106.24 Aligned_cols=81 Identities=23% Similarity=0.547 Sum_probs=67.2
Q ss_pred ccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCc-cccccCccccccC
Q psy12714 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN-YDEGFGSDQHKRK 109 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~-~~~~~~~~~~~~~ 109 (117)
..++|..|+++|..++.+.+.++.||+.||+|..|+.+|....|+.+++++||+.||.++|+++|. +..+.|.-..++.
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 467999999999878888999999999999999999999988899999999999999999999983 2222333333444
Q ss_pred Cc
Q psy12714 110 WQ 111 (117)
Q Consensus 110 ~~ 111 (117)
||
T Consensus 86 ~~ 87 (192)
T 1b8t_A 86 ES 87 (192)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 37
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.4e-16 Score=90.65 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=57.2
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCcccc-CCCccccCCeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLR-MESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
.+.++|..|+++|.. +.+.++++.||+.||+|..|+.+|. ...|+.+++.+||..||.++++.+-
T Consensus 3 ~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 3 SGSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CSCCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred cCcCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 457799999999975 6688999999999999999999998 6678889999999999998887643
No 38
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.4e-15 Score=89.92 Aligned_cols=66 Identities=18% Similarity=0.503 Sum_probs=57.6
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccC-CCcc-ccCCeeccHHHHHhhhCCCC
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM-ESYT-MNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~-~~~g~~~C~~~y~~~~~~kc 95 (117)
....++|..|+++|. ++.+.+.++.||..||+|..|++.|.. ..|. .+++.+||..||.++|++++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 12 GKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp CCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred hhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 345679999999997 667889999999999999999999975 4555 47999999999999999987
No 39
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.58 E-value=2.2e-15 Score=102.40 Aligned_cols=65 Identities=32% Similarity=0.730 Sum_probs=61.0
Q ss_pred cccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhhCCCCc
Q psy12714 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN 96 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~~kc~ 96 (117)
..+|..|+++|...+.+.+.++.||..||+|..|+.+|....|+.+++++||+.||.++|+++|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~ 179 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGF 179 (192)
T ss_dssp CEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCC
T ss_pred CCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCC
Confidence 56899999999877888999999999999999999999888899999999999999999999993
No 40
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=87.90 Aligned_cols=60 Identities=20% Similarity=0.564 Sum_probs=54.0
Q ss_pred ccccccccccccccc----CccEEeCCCcccccCcccccCCccccCCCccccCCeeccHHHHHh
Q psy12714 30 NPSSLCFACNKKVYP----LEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQ 89 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~----~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~ 89 (117)
...++|.+|+++|.. .+.+.+.++.||..||+|..|+++|....|+.+++.+||..||.+
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 456799999999983 467889999999999999999999998889999999999999965
No 41
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.56 E-value=7.6e-16 Score=97.97 Aligned_cols=70 Identities=23% Similarity=0.572 Sum_probs=60.3
Q ss_pred ccccccccccccCc-cEEeCCCcccccCcccccCCcccc-CCCccccCCeeccHHHHHhhhCCCCccccccC
Q psy12714 33 SLCFACNKKVYPLE-KIETDGKLFHRACFRCTQCCTVLR-MESYTMNNGHLYCLPHFKQLFISRGNYDEGFG 102 (117)
Q Consensus 33 ~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~~C~~~y~~~~~~kc~~~~~~~ 102 (117)
.+|..|++.|...+ .+.+.++.||..||.|..|++.|. ...|+.+++.+||..||.++|+++|.+..+.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 38999999998654 457899999999999999999995 44688899999999999999999997665543
No 42
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=84.99 Aligned_cols=59 Identities=20% Similarity=0.641 Sum_probs=53.2
Q ss_pred ccccccccccccc-CccEEeCCCccc--ccCcccccCCccccCCCccccCCeecc-HHHHHhh
Q psy12714 32 SSLCFACNKKVYP-LEKIETDGKLFH--RACFRCTQCCTVLRMESYTMNNGHLYC-LPHFKQL 90 (117)
Q Consensus 32 ~~~C~~C~~~i~~-~~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~~C-~~~y~~~ 90 (117)
.++|.+|+++|.. ++.+.++++.|| ..||+|..|+.+|....|+.+++++|| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 5689999999986 367899999999 999999999999998889999999999 8998654
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.1e-13 Score=81.78 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=54.4
Q ss_pred cccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccC-CeeccHHHHHhhhCCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNN-GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~-g~~~C~~~y~~~~~~kc 95 (117)
...++|..|++.|. ++.+.+.++.||..||+|..|+++|..+.++..+ +.+||..||.++++...
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 13 LYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp SCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCC
T ss_pred HhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCC
Confidence 34579999999997 5778999999999999999999999877766654 56799999987776543
No 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.35 E-value=2.2e-13 Score=87.04 Aligned_cols=61 Identities=23% Similarity=0.610 Sum_probs=54.1
Q ss_pred cccccccccccCc-cEEeCCCcccccCcccccCCcccc-CCCccccCCeeccHHHHHhhhCCC
Q psy12714 34 LCFACNKKVYPLE-KIETDGKLFHRACFRCTQCCTVLR-MESYTMNNGHLYCLPHFKQLFISR 94 (117)
Q Consensus 34 ~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~~C~~~y~~~~~~k 94 (117)
+|..|+++|...+ .+.+.++.||..||.|..|+++|. ...|+..++++||..||.++|+++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 8999999997655 467999999999999999999995 556888999999999999998764
No 45
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.28 E-value=9.9e-13 Score=89.00 Aligned_cols=62 Identities=26% Similarity=0.619 Sum_probs=53.0
Q ss_pred cccccccccccCcc-EEeCCCcccccCcccccCCccccC-CCccccCCeeccHHHHHhhhCCCC
Q psy12714 34 LCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRM-ESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 34 ~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~-~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
+|..|++.|...+. +.+.++.||..||+|..|++.|.. ..|+..++++||..||.++|+++|
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~ 134 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGH 134 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC---
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccc
Confidence 79999999986554 579999999999999999999964 468888999999999999999998
No 46
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.23 E-value=4.9e-12 Score=80.30 Aligned_cols=61 Identities=20% Similarity=0.565 Sum_probs=53.6
Q ss_pred ccccccccccccccC-ccEEeCCCccc--ccCcccccCCccccCCCccccCCeeccHHHHHhhh
Q psy12714 31 PSSLCFACNKKVYPL-EKIETDGKLFH--RACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~-~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~ 91 (117)
..++|..|+++|... ..+.+.++.|| ..||.|..|+++|....|+.+++++||..+|.++|
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred cCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 467999999999764 45789999999 99999999999998777888999999998887765
No 47
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.15 E-value=2.4e-11 Score=80.82 Aligned_cols=65 Identities=18% Similarity=0.485 Sum_probs=53.8
Q ss_pred cccccccccccccccCccE-EeCCCcccccCcccccCCccccCC-Cccc-cCCeeccHHHHHhhhCCC
Q psy12714 30 NPSSLCFACNKKVYPLEKI-ETDGKLFHRACFRCTQCCTVLRME-SYTM-NNGHLYCLPHFKQLFISR 94 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~-~~~~~~~H~~Cf~C~~C~~~L~~~-~~~~-~~g~~~C~~~y~~~~~~k 94 (117)
...++|..|++.|...+.+ .+.++.||..||+|..|++.|..+ .|+. .++++||..||.+++...
T Consensus 63 ~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 63 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp HHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC
T ss_pred cccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhcc
Confidence 3457999999999876654 799999999999999999999744 4544 689999999998887654
No 48
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.08 E-value=8.8e-11 Score=78.94 Aligned_cols=61 Identities=20% Similarity=0.518 Sum_probs=50.6
Q ss_pred cccccccccccccccCcc-EEeCCCcccccCcccccCCccccCC-Cccc-cCCeeccHHHHHhh
Q psy12714 30 NPSSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRME-SYTM-NNGHLYCLPHFKQL 90 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~L~~~-~~~~-~~g~~~C~~~y~~~ 90 (117)
...++|..|+++|...+. +.+.++.||..||+|..|++.|..+ .|+. .++++||..||.++
T Consensus 117 ~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 117 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp TTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 346799999999976554 4789999999999999999999754 4544 68999999999764
No 49
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.46 E-value=3.4e-08 Score=47.86 Aligned_cols=29 Identities=45% Similarity=0.944 Sum_probs=27.1
Q ss_pred cccccccccccccCccEEeCCCcccccCc
Q psy12714 32 SSLCFACNKKVYPLEKIETDGKLFHRACF 60 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 60 (117)
.++|..|++.|+..|++.+.++.||+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999997
No 50
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.17 E-value=9.8e-07 Score=53.40 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=32.2
Q ss_pred CcccccccccccccccCc-cEEeCCCcccccCcccccCC
Q psy12714 29 GNPSSLCFACNKKVYPLE-KIETDGKLFHRACFRCTQCC 66 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~ 66 (117)
....++|..|+++|..++ .+.+.++.||+.||.|..|+
T Consensus 63 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 63 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp TCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred hhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 345679999999997554 57899999999999999985
No 51
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=97.23 E-value=6.9e-05 Score=46.87 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=41.7
Q ss_pred ccccccccccc--CccEEeCCCcccccCc--------ccccCCcccc-------------CCCccccCCeeccHHHHHhh
Q psy12714 34 LCFACNKKVYP--LEKIETDGKLFHRACF--------RCTQCCTVLR-------------MESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 34 ~C~~C~~~i~~--~~~~~~~~~~~H~~Cf--------~C~~C~~~L~-------------~~~~~~~~g~~~C~~~y~~~ 90 (117)
+|..|++.+.. ...+...++.|...|+ +|..|+..+. ...|+.+++++||..||.++
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~~g~~~l~g~~f~~~~~~~yC~~~~~~~ 113 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 113 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSSSSSSSCCSCTTCCTTCCCCEECTTTTT
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheEEcCCcCCCCCccEecCCEeEccCcchhc
Confidence 57777777742 2234566666665554 5666655543 44577789999999999988
Q ss_pred hCCCC
Q psy12714 91 FISRG 95 (117)
Q Consensus 91 ~~~kc 95 (117)
+.+++
T Consensus 114 ~~~~g 118 (122)
T 1m3v_A 114 DAANG 118 (122)
T ss_dssp TCCSC
T ss_pred hhhcC
Confidence 87755
No 52
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=9.4e-05 Score=42.87 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=12.6
Q ss_pred CCeeccHHHHHhhhCCCC
Q psy12714 78 NGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 78 ~g~~~C~~~y~~~~~~kc 95 (117)
+|.+||+.||.++|+++|
T Consensus 1 ~g~~yC~~~y~~~~~~~C 18 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTC 18 (82)
T ss_dssp CCCCCCCCCCCCCCSCBC
T ss_pred CCceechhHhCcccCCcC
Confidence 466777777777777766
No 53
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.93 E-value=0.00012 Score=42.08 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=12.9
Q ss_pred CCeeccHHHHHhhhCCCC
Q psy12714 78 NGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 78 ~g~~~C~~~y~~~~~~kc 95 (117)
+|++||+.||.++|+++|
T Consensus 1 gg~~yC~~cy~~~~~~~C 18 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRC 18 (80)
T ss_dssp CCCCSCCCCCCCCSSCCC
T ss_pred CCcEEcHHHHccccCCcC
Confidence 366777777777777776
No 54
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.92 E-value=0.00014 Score=42.02 Aligned_cols=17 Identities=6% Similarity=-0.283 Sum_probs=12.5
Q ss_pred CeeccHHHHHhhhCCCC
Q psy12714 79 GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 79 g~~~C~~~y~~~~~~kc 95 (117)
+.+||+.||.++|+++|
T Consensus 2 ~~~yC~~~y~~~~~~~C 18 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFC 18 (81)
T ss_dssp CCCCCCCCSSCCSSCBC
T ss_pred CCccchhHHhhhcCCcC
Confidence 46777777777777776
No 55
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.78 E-value=0.00015 Score=41.71 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=11.6
Q ss_pred CeeccHHHHHhhhCCCC
Q psy12714 79 GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 79 g~~~C~~~y~~~~~~kc 95 (117)
+++||+.||.++|+++|
T Consensus 2 g~~yC~~~y~~~~~~~C 18 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKC 18 (80)
T ss_dssp CCCCCCCCCCCCCSCBC
T ss_pred CCccchhHHhhhcCCcc
Confidence 56677777777776666
No 56
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.74 E-value=0.00028 Score=40.70 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=13.0
Q ss_pred CeeccHHHHHhhhCCCC
Q psy12714 79 GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 79 g~~~C~~~y~~~~~~kc 95 (117)
+.+||+.||.++|+++|
T Consensus 2 ~~~yC~~dy~~~~~~~C 18 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRC 18 (81)
T ss_dssp CCCCCCSCGGGSCCCBC
T ss_pred CCCcchHHHHhHhCCcC
Confidence 45788888888888876
No 57
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.00026 Score=40.42 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=12.4
Q ss_pred CeeccHHHHHhhhCCCC
Q psy12714 79 GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 79 g~~~C~~~y~~~~~~kc 95 (117)
+.+||+.||.++|+++|
T Consensus 2 ~~~yC~~cy~~~~~~~C 18 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKC 18 (77)
T ss_dssp CSSCCTTCCCSCCCCCC
T ss_pred CCeEchhHhchhhCccC
Confidence 56777777777777776
No 58
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.38 E-value=0.00042 Score=39.99 Aligned_cols=17 Identities=0% Similarity=-0.406 Sum_probs=9.4
Q ss_pred CeeccHHHHHhhhCCCC
Q psy12714 79 GHLYCLPHFKQLFISRG 95 (117)
Q Consensus 79 g~~~C~~~y~~~~~~kc 95 (117)
+.+||+.||.++|+++|
T Consensus 2 ~~~yC~~cy~~~~~~~C 18 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKC 18 (82)
T ss_dssp CSCCCCCCCSCCCSCBC
T ss_pred CCcCchhHHccccCCcC
Confidence 34555555555555554
No 59
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.10 E-value=0.00076 Score=38.85 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=11.0
Q ss_pred ccccCCccccCCCccccCCeeccHHHH
Q psy12714 61 RCTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 61 ~C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
+|..|+..+.. .+....++.|...||
T Consensus 17 ~C~~C~~~I~~-~~~~a~~~~~H~~CF 42 (81)
T 2dlo_A 17 KCATCSQPILD-RILRAMGKAYHPGCF 42 (81)
T ss_dssp BCTTTCCBCCS-CCEEETTEEECTTTC
T ss_pred ccccCCCeecc-eeEEECCccccHHhc
Confidence 35555555542 222233444444444
No 60
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=95.23 E-value=0.0029 Score=38.85 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=39.4
Q ss_pred cccccccccccc-C-ccEEeCCCccccc---------Ccccc-----cCCcc-ccCCCccccCCeeccHHHHHhhhCCCC
Q psy12714 33 SLCFACNKKVYP-L-EKIETDGKLFHRA---------CFRCT-----QCCTV-LRMESYTMNNGHLYCLPHFKQLFISRG 95 (117)
Q Consensus 33 ~~C~~C~~~i~~-~-~~~~~~~~~~H~~---------Cf~C~-----~C~~~-L~~~~~~~~~g~~~C~~~y~~~~~~kc 95 (117)
-+|..|++.|.. + ..+...++.|... |..|. .|... |....|+.+++++||..||.++.++.+
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~g 110 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANG 110 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSCCCSSCSSTTSSBCCCSSSCCCEEEECTTCCCTTS
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCceeEcCCccCCCCeeEEcCCEeecchhhhccccccC
Confidence 468888888853 2 3334555655433 33332 23333 445567788999999999988776644
No 61
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.57 E-value=1.6 Score=25.18 Aligned_cols=51 Identities=18% Similarity=0.487 Sum_probs=35.1
Q ss_pred CcccccccccccccccCccEEeCCCcccccCcccccCCccccCCCccccCCeeccH
Q psy12714 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCL 84 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~ 84 (117)
....-.|..|.+.+.+...+..-...-|+-||-|..-. |. .-...+++||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s--Ik---~q~~~~EvyCP 62 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES--IK---AQGATGEVYCP 62 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH--HH---HHHSSSCCCCT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHH--HH---hcCCCCcEECC
Confidence 45567899999999777777766677799999886421 11 11245778884
No 62
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=71.39 E-value=3.2 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccccCCccccCCCccccCCeecc-HHHHHh
Q psy12714 61 RCTQCCTVLRMESYTMNNGHLYC-LPHFKQ 89 (117)
Q Consensus 61 ~C~~C~~~L~~~~~~~~~g~~~C-~~~y~~ 89 (117)
.|..|+.......-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46777777766666778899998 777754
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.36 E-value=2.3 Score=23.91 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCcccccccccccccccCccEEeCCCcccccCc
Q psy12714 27 GTGNPSSLCFACNKKVYPLEKIETDGKLFHRACF 60 (117)
Q Consensus 27 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 60 (117)
.+......|..|...|..+.....=+..||..|+
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred hccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 4667778999999998654322223345666665
No 64
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=67.20 E-value=2.3 Score=28.58 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=17.9
Q ss_pred ccccCCccccCCCccccCCeeccHHHHHh
Q psy12714 61 RCTQCCTVLRMESYTMNNGHLYCLPHFKQ 89 (117)
Q Consensus 61 ~C~~C~~~L~~~~~~~~~g~~~C~~~y~~ 89 (117)
.|..|+-..-...-...+|+.+|..|+.+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 46666655443333445778888888754
No 65
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=64.95 E-value=4.5 Score=20.44 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=13.0
Q ss_pred ccCCeeccHHHHHhhh
Q psy12714 76 MNNGHLYCLPHFKQLF 91 (117)
Q Consensus 76 ~~~g~~~C~~~y~~~~ 91 (117)
..+-++||..||+++-
T Consensus 24 SVnTQP~CHEC~errq 39 (49)
T 2eqg_A 24 SVNTQPLCHECSERRQ 39 (49)
T ss_dssp CTTTTTSCHHHHHHHH
T ss_pred EecCccchHHHHHHHh
Confidence 3688999999998653
No 66
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.34 E-value=3.1 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=17.2
Q ss_pred ccccccccccccccCccEEeCCCcccccCc
Q psy12714 31 PSSLCFACNKKVYPLEKIETDGKLFHRACF 60 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 60 (117)
....|..|...|..+.+..--+..||..|+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 466788888888644321112344566665
No 67
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=56.49 E-value=21 Score=20.01 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=11.4
Q ss_pred Ccccccccccccccc
Q psy12714 29 GNPSSLCFACNKKVY 43 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~ 43 (117)
.....+|..|++.+.
T Consensus 22 k~~~~RC~~C~kkvg 36 (74)
T 1wfp_A 22 KSTATRCLSCNKKVG 36 (74)
T ss_dssp TCCCCBCSSSCCBCT
T ss_pred cccCccchhhcCccc
Confidence 555679999998773
No 68
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.21 E-value=19 Score=18.53 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=27.4
Q ss_pred CcccccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHH
Q psy12714 29 GNPSSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
......|..|++. ++.+. .-++.||..|+.- +|.. .-.+..+|..|-
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~p-----pl~~----~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSS-----CCCS----CCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCC-----CcCC----CCCCceEChhhh
Confidence 3345679999874 34443 3446789887642 1211 224678888874
No 69
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.27 E-value=6.2 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=29.7
Q ss_pred CcccccccccccccccCccEEe--CCCcccccCcccccCCccccCCCccccCCeeccHHHHHhh
Q psy12714 29 GNPSSLCFACNKKVYPLEKIET--DGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~~~~~--~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~ 90 (117)
......|..|++.-.....|.- =+..||..|..-. + .....+..||..|-.++
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~-----~----~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIM-----A----APPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCS-----S----CCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCC-----c----cCCCCCCEEChhccCch
Confidence 3445579999987632233332 2356787774211 1 11124688998887654
No 70
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.07 E-value=21 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=14.3
Q ss_pred cccccccccccccccCccEEeCCCcc
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDGKLF 55 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~~~~ 55 (117)
.....|..|+..|- +.+.+..|
T Consensus 14 ~~~qiCqiCGD~VG----~~~~Ge~F 35 (93)
T 1weo_A 14 LDGQFCEICGDQIG----LTVEGDLF 35 (93)
T ss_dssp CSSCBCSSSCCBCC----BCSSSSBC
T ss_pred cCCCccccccCccc----cCCCCCEE
Confidence 34568999998873 34555543
No 71
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.57 E-value=6.1 Score=20.02 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=15.0
Q ss_pred cccccccccccCccEE--eCCCcccccCc
Q psy12714 34 LCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 34 ~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
.|..|++.-...+.+. .=++.||..|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl 30 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCL 30 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccC
Confidence 4777776543333333 23456887775
No 72
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.50 E-value=29 Score=18.31 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=30.2
Q ss_pred cccccccccccccc--CccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhh
Q psy12714 31 PSSLCFACNKKVYP--LEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 31 ~~~~C~~C~~~i~~--~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~ 90 (117)
....|..|+..-.. ...+. .=+..||..|+.- +|.. ....-++..||..|-...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~-~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDS-SVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCH-HHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----cccc-cccCCCCCEECCCCcCcc
Confidence 34589999876321 23333 3456789888532 1211 001146789999997543
No 73
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.42 E-value=9.2 Score=20.66 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=18.6
Q ss_pred cccccccccccccccCccEEe--CCCcccccCc
Q psy12714 30 NPSSLCFACNKKVYPLEKIET--DGKLFHRACF 60 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~--~~~~~H~~Cf 60 (117)
.....|..|...+...+.+.. =+..||..|+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 345679999887755443332 3445666664
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.26 E-value=24 Score=19.40 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=31.1
Q ss_pred Cccccccccccccc--ccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhh
Q psy12714 29 GNPSSLCFACNKKV--YPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91 (117)
Q Consensus 29 ~~~~~~C~~C~~~i--~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~ 91 (117)
......|..|++.- ...+.|. .=+..||..|+.-. ..-+|..||..|-..+-
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----------~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----------YIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----------SCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----------cCCCCCcCCccCcCcCc
Confidence 34456899998763 1223333 23457888775321 12357899999976543
No 75
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.75 E-value=32 Score=17.92 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=28.1
Q ss_pred cccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhh
Q psy12714 32 SSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~ 90 (117)
...|..|++. ++.+. .=++.||..|+.- +|.. .-.+..+|..|-.+.
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSS-----CCSS----CCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCC-----CcCC----CCCCceEChhccChh
Confidence 4578888864 34443 3346788887532 1211 224689999997544
No 76
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.18 E-value=9.1 Score=21.08 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=11.2
Q ss_pred cCCeeccHHHHHhhh
Q psy12714 77 NNGHLYCLPHFKQLF 91 (117)
Q Consensus 77 ~~g~~~C~~~y~~~~ 91 (117)
=++.+||..||.+-.
T Consensus 25 CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 25 CDGDLYCARCFREGH 39 (67)
T ss_dssp TTSEEECSSHHHHHT
T ss_pred CCCceehHHHHHHHc
Confidence 367899999996543
No 77
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.37 E-value=27 Score=18.69 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=19.3
Q ss_pred cccccCcccccCCcc-ccCCCcccc--CCeeccHHHHHh
Q psy12714 54 LFHRACFRCTQCCTV-LRMESYTMN--NGHLYCLPHFKQ 89 (117)
Q Consensus 54 ~~H~~Cf~C~~C~~~-L~~~~~~~~--~g~~~C~~~y~~ 89 (117)
.+|. ..|..|+.. +....|.-. .+--+|..||..
T Consensus 8 v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 8 VFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp CCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred ceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 4454 566666653 443333322 356689999865
No 78
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.68 E-value=30 Score=20.61 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.8
Q ss_pred CeeccHHHH
Q psy12714 79 GHLYCLPHF 87 (117)
Q Consensus 79 g~~~C~~~y 87 (117)
|..+|..|.
T Consensus 98 g~W~C~~C~ 106 (114)
T 2kwj_A 98 GSWSCHLCW 106 (114)
T ss_dssp SCCCCHHHH
T ss_pred CCeECcccc
Confidence 455555553
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.22 E-value=19 Score=21.23 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=5.9
Q ss_pred CeeccHHHH
Q psy12714 79 GHLYCLPHF 87 (117)
Q Consensus 79 g~~~C~~~y 87 (117)
+..+|..|.
T Consensus 94 g~W~C~~C~ 102 (111)
T 2ysm_A 94 NGWKCKNCR 102 (111)
T ss_dssp SCCCCHHHH
T ss_pred CCcCCcCCc
Confidence 567777664
No 80
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=41.47 E-value=6.9 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=13.6
Q ss_pred CcccccccccccccccCc
Q psy12714 29 GNPSSLCFACNKKVYPLE 46 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~ 46 (117)
.+....|..|++.|.-++
T Consensus 22 kS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 22 KSGRASCKKCSESIPKDS 39 (106)
T ss_dssp CSSCCBCSSSCCBCCTTC
T ss_pred CCCCCcchhhCCccCCCC
Confidence 455678999999986544
No 81
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.44 E-value=42 Score=17.88 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=18.6
Q ss_pred cccccccccccccccCccEE--eCCCcccccCc
Q psy12714 30 NPSSLCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
.....|..|.+.+.....+. .=+..||..|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 45 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCI 45 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHH
Confidence 34568999988775444333 23445666665
No 82
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=39.75 E-value=9.2 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=13.4
Q ss_pred CcccccccccccccccCc
Q psy12714 29 GNPSSLCFACNKKVYPLE 46 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~ 46 (117)
......|..|++.|.-++
T Consensus 17 KS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 17 KSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp SCSCCBCSSSCCBCCSSS
T ss_pred CCCCCCchhhCCccCCCC
Confidence 445678999999986544
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.75 E-value=45 Score=18.95 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=30.6
Q ss_pred ccccccccccccc--CccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHh
Q psy12714 32 SSLCFACNKKVYP--LEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQ 89 (117)
Q Consensus 32 ~~~C~~C~~~i~~--~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~ 89 (117)
...|..|+..-.. ...|. .=+..||..|+.- +|.......-++.+||..|-..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P-----pl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKP-----QVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS-----CCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC-----cccccccCCCCCCeeCccccch
Confidence 4579999876432 23333 3456799888532 1211111234689999999754
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=36.91 E-value=36 Score=19.43 Aligned_cols=50 Identities=12% Similarity=0.300 Sum_probs=29.5
Q ss_pred cccccccccccccc--cCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhh
Q psy12714 30 NPSSLCFACNKKVY--PLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 30 ~~~~~C~~C~~~i~--~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~ 90 (117)
.....|..|+..-. ..+.|. .-+..||..|..-. + .-+|.+||..|-...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~-----~------vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y------IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS-----S------CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC-----c------cCCCceECccccCcc
Confidence 34568999987531 123333 23356888775321 1 235789999997553
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.83 E-value=41 Score=19.40 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCcccccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHH
Q psy12714 28 TGNPSSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 28 ~~~~~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
.......|..|++. ++.+. .-+..||..|+.- .|. ..-+|.++|..|-
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~P-----pL~----~~P~g~W~C~~C~ 70 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLP-----ALQ----DVPGEEWSCSLCH 70 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSST-----TCC----CCCSSSCCCCSCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCC-----CCC----CCcCCCcCCcccc
Confidence 34456689999874 34443 3346788888532 111 1224677787764
No 86
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=36.58 E-value=43 Score=18.27 Aligned_cols=46 Identities=30% Similarity=0.615 Sum_probs=26.6
Q ss_pred cccccccccccccccCccEEeCC-----CcccccCcccccCCccccCCCccccCCeeccHHHHH
Q psy12714 30 NPSSLCFACNKKVYPLEKIETDG-----KLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
.....| .|++.-. ++.|.-.+ ..||..|.. |... ..+..||..|-.
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~~ 64 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 64 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTSS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCCc
Confidence 334577 6888653 45444443 468988864 2211 136788887753
No 87
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=36.08 E-value=29 Score=17.20 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=16.1
Q ss_pred cccCCccccCCCccccCCeeccHHHHH
Q psy12714 62 CTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 62 C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
|..|+..-+.......+|..+|..|..
T Consensus 4 C~~C~tt~Tp~WR~gp~G~~LCNaCGl 30 (43)
T 2vut_I 4 CTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp CSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred CCccCCCCCCccccCCCCCcccHHHHH
Confidence 455555444434444567788988864
No 88
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.44 E-value=16 Score=19.03 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=8.3
Q ss_pred ccccccccccccc
Q psy12714 31 PSSLCFACNKKVY 43 (117)
Q Consensus 31 ~~~~C~~C~~~i~ 43 (117)
....|..|...+.
T Consensus 14 ~~~~C~IC~~~~~ 26 (69)
T 2ea6_A 14 GTVSCPICMDGYS 26 (69)
T ss_dssp CCCCCTTTCCCHH
T ss_pred CCCCCcccCcccc
Confidence 3456777777653
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.82 E-value=54 Score=17.41 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=29.0
Q ss_pred ccccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhh
Q psy12714 31 PSSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~ 90 (117)
....|..|+.. ++.+. .=+..||..|+.- +|.. .-.+..+|..|-..+
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p-----pl~~----~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSP-----PLRE----IPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSS-----CCSS----CCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCC-----CcCc----CCCCCeECccccCcc
Confidence 45689999864 34443 3345789887542 1211 224789999997543
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.57 E-value=66 Score=18.39 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred cccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHHHhhh
Q psy12714 32 SSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~ 91 (117)
...|..|+..-.....|. .=+..||..|+.- +|. .+-.+..||..|.....
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~P-----pl~----~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP-----PLP----EIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSS-----CCS----SCCSSCCCCHHHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCC-----Ccc----cCCCCCcCCccCcCccc
Confidence 457999988653333343 2345789888632 121 12347899999986543
No 91
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=33.91 E-value=14 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=13.3
Q ss_pred CcccccccccccccccCc
Q psy12714 29 GNPSSLCFACNKKVYPLE 46 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~ 46 (117)
.+....|..|++.|.-++
T Consensus 12 kSgRA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 12 KRGTAGCKKCKEKIVKGV 29 (117)
T ss_dssp CSSCEECTTSSCEECTTC
T ss_pred CCCCccchhhCcccCCCC
Confidence 344678999999986554
No 92
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=33.71 E-value=30 Score=18.66 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=25.3
Q ss_pred cccccccccccccCccEE--eCCCcccccCcccccCCccccCCCccccCCeeccHHHH
Q psy12714 32 SSLCFACNKKVYPLEKIE--TDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
..+|..|++. ++.|. .=++.||..|+.- .| -..-++..||..|-
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P-----~l----~~~P~g~W~C~~C~ 57 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFP-----AG----TSRPGTGLRCRSCS 57 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCT-----TT----CCCCSSSCCCTTTT
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCC-----cc----CcCCCCCEECcccc
Confidence 4579999863 33343 3356788887521 11 11234678888774
No 93
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=33.01 E-value=13 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=6.9
Q ss_pred ccccccccccc
Q psy12714 32 SSLCFACNKKV 42 (117)
Q Consensus 32 ~~~C~~C~~~i 42 (117)
...|..|...+
T Consensus 5 ~~~C~IC~~~~ 15 (68)
T 1chc_A 5 AERCPICLEDP 15 (68)
T ss_dssp CCCCSSCCSCC
T ss_pred CCCCeeCCccc
Confidence 34677776655
No 94
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.76 E-value=43 Score=18.73 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=10.5
Q ss_pred Cccccccccccccc
Q psy12714 29 GNPSSLCFACNKKV 42 (117)
Q Consensus 29 ~~~~~~C~~C~~~i 42 (117)
....++|..|++.|
T Consensus 22 k~~~nRC~~CrKkv 35 (74)
T 1wfl_A 22 KPKKNRCFMCRKKV 35 (74)
T ss_dssp CSCTTBCSSSCCBC
T ss_pred CCcCCcChhhCCcc
Confidence 33467999999876
No 95
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.32 E-value=47 Score=19.09 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.1
Q ss_pred CCcccccccccccccc
Q psy12714 28 TGNPSSLCFACNKKVY 43 (117)
Q Consensus 28 ~~~~~~~C~~C~~~i~ 43 (117)
......+|..|++.+.
T Consensus 21 ~k~~~~rC~~C~kkvg 36 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTG 36 (85)
T ss_dssp CCCCCCBCSSSCCBCS
T ss_pred CcccCccchhhCCeec
Confidence 3556689999998773
No 96
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.37 E-value=43 Score=17.55 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=26.0
Q ss_pred cccccccccccccCccEEeCC-----CcccccCcccccCCccccCCCccccCCeeccHHHHH
Q psy12714 32 SSLCFACNKKVYPLEKIETDG-----KLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
...| .|+++- .++.|.-.+ ..||..|.. |... ..+..||..|-.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccC
Confidence 3456 688765 345455444 458988864 2211 136789988853
No 97
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=29.74 E-value=41 Score=18.29 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=15.5
Q ss_pred ccccCCccccCCCccccCCeeccHHHH
Q psy12714 61 RCTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 61 ~C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
.|..|+..-+.......+|..+|..|.
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCG 37 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACG 37 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHH
Confidence 344454444443444456778888886
No 98
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.65 E-value=41 Score=17.61 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=25.9
Q ss_pred cccccccccccccCccEEeCC-----CcccccCcccccCCccccCCCccccCCeeccHHHHH
Q psy12714 32 SSLCFACNKKVYPLEKIETDG-----KLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
...| .|+++- .++.|.-.+ ..||..|.. |... ..+..||..|-.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccC
Confidence 3456 788765 345455444 467988854 2211 136789988853
No 99
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.19 E-value=14 Score=18.48 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.9
Q ss_pred cccccccccccccC
Q psy12714 32 SSLCFACNKKVYPL 45 (117)
Q Consensus 32 ~~~C~~C~~~i~~~ 45 (117)
-..|..||++|...
T Consensus 17 YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 17 YRVCEKCGKPLALT 30 (44)
T ss_dssp EEECTTTCCEEETT
T ss_pred chhhcccCCcchHH
Confidence 45899999999543
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.32 E-value=90 Score=17.98 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=26.3
Q ss_pred ccccccccccccccCccEEeCC-----CcccccCcccccCCccccCCCccccCCeeccHHHHH
Q psy12714 31 PSSLCFACNKKVYPLEKIETDG-----KLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
....| .|++.-. ++.|...+ ..||..|.. |... ..+..||..|-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCccC
Confidence 34567 8988653 45444444 457988853 2211 136788887753
No 101
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=27.94 E-value=20 Score=15.98 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=10.2
Q ss_pred ccCcccccCCcccc
Q psy12714 57 RACFRCTQCCTVLR 70 (117)
Q Consensus 57 ~~Cf~C~~C~~~L~ 70 (117)
..|+.|..|+..|-
T Consensus 5 wsclvcaacsvell 18 (31)
T 2lbz_A 5 WSCLVCAACSVELL 18 (31)
T ss_dssp TGGGGGGGCCSCSG
T ss_pred HHHHHHHHhHHHHH
Confidence 36888888887653
No 102
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=27.91 E-value=14 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=14.8
Q ss_pred cccccCCccccCCCccccCCeeccHHHHHh
Q psy12714 60 FRCTQCCTVLRMESYTMNNGHLYCLPHFKQ 89 (117)
Q Consensus 60 f~C~~C~~~L~~~~~~~~~g~~~C~~~y~~ 89 (117)
..|..|+-..-.. |+.+|..|+.+
T Consensus 164 ~~C~~CGE~~~~~------g~~~C~~C~~~ 187 (191)
T 3d00_A 164 VLCPQCREAYPAQ------DGELCLSCQGG 187 (191)
T ss_dssp EECTTTCCEEEGG------GCSSCHHHHTT
T ss_pred EECCcCCCChhhC------CCcCCccccCC
Confidence 3466666543222 77888888754
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.79 E-value=61 Score=16.98 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=15.7
Q ss_pred cccccccccccccCccEE--eCCCcccccCc
Q psy12714 32 SSLCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
...|..|...+.....+. .=+..||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci 45 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCL 45 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHH
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHH
Confidence 457888887765443332 22334555554
No 104
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=27.29 E-value=43 Score=18.04 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=13.8
Q ss_pred cccCCccccCCCccccCCeeccHHHH
Q psy12714 62 CTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 62 C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
|..|+..-+.......+|..+|..|.
T Consensus 10 C~~C~tt~Tp~WR~gp~G~~LCNACG 35 (63)
T 3dfx_A 10 CANCQTTTTTLWRRNANGDPVCNACG 35 (63)
T ss_dssp CTTTCCSCCSSCCCCTTSCCCCHHHH
T ss_pred CCCcCCCCCCccCCCCCCCchhhHHH
Confidence 34444443333333445668888776
No 105
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=27.07 E-value=40 Score=16.93 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=13.5
Q ss_pred cccCCccccCCCccccCCeeccHHHH
Q psy12714 62 CTQCCTVLRMESYTMNNGHLYCLPHF 87 (117)
Q Consensus 62 C~~C~~~L~~~~~~~~~g~~~C~~~y 87 (117)
|..|+..-+.......+|..+|..|-
T Consensus 7 C~~C~tt~Tp~WR~gp~G~~LCNaCG 32 (46)
T 1gnf_A 7 CVNCGATATPLWRRDRTGHYLCNACG 32 (46)
T ss_dssp CTTTCCCCCSSCBCCTTCCCBCSHHH
T ss_pred CCCcCCCCCCcCccCCCCCccchHHH
Confidence 44444443333333345667887775
No 106
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=26.75 E-value=13 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=13.2
Q ss_pred CcccccccccccccccCc
Q psy12714 29 GNPSSLCFACNKKVYPLE 46 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~ 46 (117)
......|..|++.|.-++
T Consensus 35 kS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 35 KSGRASCKKCSESIPKDS 52 (116)
T ss_dssp SSSCCBCTTTCCBCCTTS
T ss_pred ccCCccCcccCCccCCCC
Confidence 445678999999886544
No 107
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.70 E-value=48 Score=18.73 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=20.5
Q ss_pred cccccCCccccCCCccc-cCCeeccHHHHHhhh
Q psy12714 60 FRCTQCCTVLRMESYTM-NNGHLYCLPHFKQLF 91 (117)
Q Consensus 60 f~C~~C~~~L~~~~~~~-~~g~~~C~~~y~~~~ 91 (117)
|.|..|...+.. .... ..|..||..|..+.+
T Consensus 8 ~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l 39 (94)
T 2yu4_A 8 FTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMI 39 (94)
T ss_dssp CBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHH
T ss_pred eECcCcCchhcC-CEEcCCCCCeecHHHHHHHH
Confidence 667777776654 3444 478888888775444
No 108
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.43 E-value=44 Score=17.94 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy12714 34 LCFACNKKVY 43 (117)
Q Consensus 34 ~C~~C~~~i~ 43 (117)
.|..|.+++.
T Consensus 22 ~C~~CKk~lq 31 (62)
T 2das_A 22 TCANCKKPLQ 31 (62)
T ss_dssp BCTTTCCBCC
T ss_pred Chhhccchhh
Confidence 4555555553
No 109
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=24.77 E-value=17 Score=18.59 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.8
Q ss_pred ccccccccc
Q psy12714 34 LCFACNKKV 42 (117)
Q Consensus 34 ~C~~C~~~i 42 (117)
.|..|...+
T Consensus 5 ~C~IC~~~~ 13 (64)
T 2xeu_A 5 SCPICMDGY 13 (64)
T ss_dssp BCTTTCCBH
T ss_pred CCCccChhh
Confidence 455555544
No 110
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.45 E-value=22 Score=22.19 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=13.6
Q ss_pred CcccccccccccccccCc
Q psy12714 29 GNPSSLCFACNKKVYPLE 46 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~~~~ 46 (117)
......|..|++.|.-++
T Consensus 24 KSgRA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 24 KSNRSTCKGCMEKIEKGQ 41 (134)
T ss_dssp SSSCCBCSSSCCBCCTTS
T ss_pred CCCCccchhcCCcccCCC
Confidence 455678999999986554
No 111
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=23.87 E-value=16 Score=19.23 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.7
Q ss_pred cccccccccccc
Q psy12714 32 SSLCFACNKKVY 43 (117)
Q Consensus 32 ~~~C~~C~~~i~ 43 (117)
...|..|.+.+.
T Consensus 10 ~~~C~IC~~~~~ 21 (71)
T 3ng2_A 10 TVSCPICMDGYS 21 (71)
T ss_dssp CCBCTTTCCBHH
T ss_pred CCCCcccChhhh
Confidence 456777776653
No 112
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.76 E-value=34 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=10.3
Q ss_pred Cccccccccccccc
Q psy12714 29 GNPSSLCFACNKKV 42 (117)
Q Consensus 29 ~~~~~~C~~C~~~i 42 (117)
....++|..|++.+
T Consensus 12 k~~~~rC~~C~kkv 25 (64)
T 1wfh_A 12 PQRPNRCTVCRKRV 25 (64)
T ss_dssp CSSCCCCTTTCCCC
T ss_pred CCcCCcChhhCCcc
Confidence 34457899998876
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=23.64 E-value=72 Score=16.41 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=16.1
Q ss_pred cccccccccccccccCccEEe--CCCcccccCc
Q psy12714 30 NPSSLCFACNKKVYPLEKIET--DGKLFHRACF 60 (117)
Q Consensus 30 ~~~~~C~~C~~~i~~~~~~~~--~~~~~H~~Cf 60 (117)
.....|..|...+.....+.. =+..||..|+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 44 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCV 44 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHH
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHH
Confidence 334578888776643333322 2344555553
No 114
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=23.43 E-value=72 Score=16.87 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=17.6
Q ss_pred cccccCCccccCCCccccCCeeccHHHHHhhhC
Q psy12714 60 FRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFI 92 (117)
Q Consensus 60 f~C~~C~~~L~~~~~~~~~g~~~C~~~y~~~~~ 92 (117)
|.|..|...+.. .....-|..||..|..+.+.
T Consensus 9 ~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 9 FRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred CCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 555666555533 22234567777777755543
No 115
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.24 E-value=66 Score=17.60 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.1
Q ss_pred Ccccccccccccccc
Q psy12714 29 GNPSSLCFACNKKVY 43 (117)
Q Consensus 29 ~~~~~~C~~C~~~i~ 43 (117)
.....+|..|++.+.
T Consensus 12 ~~~~~rC~~C~kk~g 26 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLE 26 (67)
T ss_dssp CSCTTBCSSSCCBCC
T ss_pred CccCCcchhhCCeec
Confidence 445679999998773
No 116
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.95 E-value=53 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.4
Q ss_pred ccccccccccccc
Q psy12714 31 PSSLCFACNKKVY 43 (117)
Q Consensus 31 ~~~~C~~C~~~i~ 43 (117)
....|..|...+.
T Consensus 14 ~~~~C~IC~~~~~ 26 (81)
T 2ecl_A 14 ECDTCAICRVQVM 26 (81)
T ss_dssp CCSCBTTTTBCTT
T ss_pred CCCCCcccChhhh
Confidence 4456777777663
No 117
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=22.70 E-value=65 Score=16.99 Aligned_cols=44 Identities=30% Similarity=0.558 Sum_probs=26.5
Q ss_pred cccccccccccccCccEEeCC-----CcccccCcccccCCccccCCCccccCCeeccHHHHH
Q psy12714 32 SSLCFACNKKVYPLEKIETDG-----KLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88 (117)
Q Consensus 32 ~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~~C~~~y~ 88 (117)
...| .|+++- .++.|.-.+ ..||..|.. |... ..+..||..|-.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCccc
Confidence 3456 788864 345455444 567988853 2211 247889988853
No 118
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.39 E-value=29 Score=18.67 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=18.2
Q ss_pred ccccccccccccccCcc-EEeC---CCcccccC
Q psy12714 31 PSSLCFACNKKVYPLEK-IETD---GKLFHRAC 59 (117)
Q Consensus 31 ~~~~C~~C~~~i~~~~~-~~~~---~~~~H~~C 59 (117)
....|..|++++..... |.-. .+.||..|
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 35579999998855433 4444 45678766
No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=49 Score=18.37 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=14.1
Q ss_pred cccccccccccCccEE--eCCCcccccCc
Q psy12714 34 LCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 34 ~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
.|..|++.-..++.|. .=+..||..|+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl 56 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCL 56 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCcccccccc
Confidence 5666765433333333 23456777775
No 120
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.05 E-value=41 Score=12.91 Aligned_cols=11 Identities=18% Similarity=0.724 Sum_probs=6.9
Q ss_pred cccccCCcccc
Q psy12714 60 FRCTQCCTVLR 70 (117)
Q Consensus 60 f~C~~C~~~L~ 70 (117)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 45677776654
No 121
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.62 E-value=33 Score=18.74 Aligned_cols=9 Identities=22% Similarity=0.766 Sum_probs=4.7
Q ss_pred ccccccccc
Q psy12714 34 LCFACNKKV 42 (117)
Q Consensus 34 ~C~~C~~~i 42 (117)
+|..|+..+
T Consensus 10 ~CP~ck~~L 18 (68)
T 2hf1_A 10 VCPLCKGPL 18 (68)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCCcC
Confidence 455555443
No 122
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.44 E-value=34 Score=18.69 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=3.1
Q ss_pred ccccccc
Q psy12714 34 LCFACNK 40 (117)
Q Consensus 34 ~C~~C~~ 40 (117)
+|..|+.
T Consensus 12 ~CP~ck~ 18 (67)
T 2jny_A 12 ACPKDKG 18 (67)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 3444443
No 123
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=21.13 E-value=77 Score=16.22 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=11.6
Q ss_pred ccccCCccccCCCccc-cCCeeccHHHH
Q psy12714 61 RCTQCCTVLRMESYTM-NNGHLYCLPHF 87 (117)
Q Consensus 61 ~C~~C~~~L~~~~~~~-~~g~~~C~~~y 87 (117)
.|+.|++.-......+ ..+...|..|-
T Consensus 13 ~CSFCGk~~~ev~~LIaGpgv~IC~eCi 40 (51)
T 2ds5_A 13 YCSFCGKSQHEVRKLIAGPSVYICDECV 40 (51)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHH
T ss_pred EecCCCCCHHHhcccCCCCCCEehHHHH
Confidence 4555555433222222 12445565554
No 124
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=1e+02 Score=16.01 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=7.5
Q ss_pred ccccccccccc
Q psy12714 32 SSLCFACNKKV 42 (117)
Q Consensus 32 ~~~C~~C~~~i 42 (117)
...|..|...+
T Consensus 15 ~~~C~IC~~~~ 25 (71)
T 2d8t_A 15 VPECAICLQTC 25 (71)
T ss_dssp CCBCSSSSSBC
T ss_pred CCCCccCCccc
Confidence 45688887665
No 125
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.04 E-value=32 Score=18.92 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=5.1
Q ss_pred ccccccccc
Q psy12714 34 LCFACNKKV 42 (117)
Q Consensus 34 ~C~~C~~~i 42 (117)
+|..|+..+
T Consensus 10 ~CP~ck~~L 18 (70)
T 2js4_A 10 VCPVCKGRL 18 (70)
T ss_dssp BCTTTCCBE
T ss_pred ECCCCCCcC
Confidence 566665544
No 126
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.97 E-value=36 Score=18.61 Aligned_cols=9 Identities=11% Similarity=0.493 Sum_probs=4.7
Q ss_pred ccccccccc
Q psy12714 34 LCFACNKKV 42 (117)
Q Consensus 34 ~C~~C~~~i 42 (117)
+|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 555555444
No 127
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.72 E-value=1.3e+02 Score=17.47 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred ccccCcccccCCc-cccCCCcccc--CCeeccHHHHHhh
Q psy12714 55 FHRACFRCTQCCT-VLRMESYTMN--NGHLYCLPHFKQL 90 (117)
Q Consensus 55 ~H~~Cf~C~~C~~-~L~~~~~~~~--~g~~~C~~~y~~~ 90 (117)
+|.. ..|..|+. ++....|.-. .+--+|..||...
T Consensus 28 ~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 28 KHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 4543 56666765 4544444432 3567899998654
No 128
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.59 E-value=44 Score=13.01 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=7.7
Q ss_pred cccccCCccccC
Q psy12714 60 FRCTQCCTVLRM 71 (117)
Q Consensus 60 f~C~~C~~~L~~ 71 (117)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 567777776543
No 129
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.56 E-value=34 Score=18.59 Aligned_cols=14 Identities=57% Similarity=1.163 Sum_probs=10.5
Q ss_pred Cccccccccccccc
Q psy12714 29 GNPSSLCFACNKKV 42 (117)
Q Consensus 29 ~~~~~~C~~C~~~i 42 (117)
....++|..|++.+
T Consensus 12 ~~~~~rC~~C~kkv 25 (64)
T 1wg2_A 12 VRPNNRCFSCNKKV 25 (64)
T ss_dssp SCCSCSCTTTCCCC
T ss_pred CCcCCcChhhCCcc
Confidence 44467999999876
No 130
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.15 E-value=75 Score=20.37 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=15.4
Q ss_pred ccccccccccccCccEE--eCCCcccccCc
Q psy12714 33 SLCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 33 ~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
..|..|+.. ++.+. .-++.||..|.
T Consensus 5 ~~C~~C~~~---g~ll~Cd~C~~~~H~~C~ 31 (184)
T 3o36_A 5 DWCAVCQNG---GELLCCEKCPKVFHLSCH 31 (184)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECTTTS
T ss_pred CccccCCCC---CeeeecCCCCcccCcccc
Confidence 468888854 33343 33467888874
No 131
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.13 E-value=39 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=14.1
Q ss_pred ccccccccccccCccEE--eCCCcccccCc
Q psy12714 33 SLCFACNKKVYPLEKIE--TDGKLFHRACF 60 (117)
Q Consensus 33 ~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf 60 (117)
..|..|+..- +.+. .-+..||..|.
T Consensus 3 ~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl 29 (189)
T 2ro1_A 3 TICRVCQKPG---DLVMCNQCEFCFHLDCH 29 (189)
T ss_dssp CCBTTTCCCS---SCCCCTTTCCBCCSTTS
T ss_pred CcCccCCCCC---ceeECCCCCchhccccC
Confidence 4678887542 2222 23456777775
Done!