RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12714
(117 letters)
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 98.0 bits (244), Expect = 3e-28
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 19 NQPEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNN 78
+ + C C K VYP+E++ + ++FH +CFRC+ C L + +Y +
Sbjct: 2 SSGSSGMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLH 61
Query: 79 GHLYCLPHFKQLFISRGNYDEGFGSDQH 106
G +YC PHF QLF S+GNYDEGFGS
Sbjct: 62 GRIYCKPHFNQLFKSKGNYDEGFGSGPS 89
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 87.5 bits (217), Expect = 2e-24
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
+ C AC + VY E+++ DG+ FHR CF C C L + +++ +YC + + +
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66
Query: 92 ISRG-NYDEGFGS 103
+G Y +G G+
Sbjct: 67 GPKGYGYGQGAGT 79
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 80.5 bits (199), Expect = 1e-21
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 25 SNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCL 84
S+G+ +S C C+K VY EK+ + GK +H+ C +C +C L + ++G +C
Sbjct: 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCH 61
Query: 85 -PHFKQLFISRGN 96
P + LF S +
Sbjct: 62 KPCYATLFGSGPS 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 83.1 bits (205), Expect = 2e-21
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
S C C + VY EK+ GK +H++CFRC +C L + +G +YC + + F
Sbjct: 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 174
Query: 92 ISRG-NYDEGFGSDQHKR 108
+G + +G G+ H +
Sbjct: 175 GPKGFGFGQGAGALIHSQ 192
Score = 70.4 bits (172), Expect = 2e-16
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 24 PSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYC 83
P+ G G C C K VY E+++ +G FH++CF C C L + ++ +YC
Sbjct: 2 PNWGGGKK---CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYC 58
Query: 84 LPHFKQLFISRGNYDEGFGSDQHKRKWQ 111
+ + + +G K +
Sbjct: 59 KSCYGKKYGPKGKGKGMGAGTLSTDKGE 86
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 77.8 bits (192), Expect = 1e-20
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYC-LPHFKQLFIS 93
C C+K+VY E++ + GK +HR C +C +C L + + G YC P + +F
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 94 RGNYDEGFG 102
+G G G
Sbjct: 63 KGF---GRG 68
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 75.8 bits (186), Expect = 1e-19
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESY--TMNNGHLYCLPHFK 88
LC C + +Y LE++ +G FHR+CFRC C L Y +GH YCL H
Sbjct: 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73
Query: 89 QLF 91
Q
Sbjct: 74 QTD 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 69.3 bits (170), Expect = 2e-17
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
S+ C C P EK + ++G+L+H CF C QC + G YC F+ L
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70
Query: 91 F 91
F
Sbjct: 71 F 71
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 67.8 bits (166), Expect = 1e-16
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
S+ C C P EK + ++G+L+H CF C QC + G YC F+ L
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70
Query: 91 F 91
F
Sbjct: 71 F 71
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 60.9 bits (148), Expect = 6e-14
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
SS C C K + P + +E G +H CF C +C + +S+ + +C+P +++
Sbjct: 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64
Query: 91 FISR 94
S
Sbjct: 65 HASG 68
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 60.5 bits (147), Expect = 8e-14
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
SS C AC + V P + +E G+ +H CF C+ C L S+ + G YC+P ++
Sbjct: 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64
Query: 91 F 91
F
Sbjct: 65 F 65
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 59.3 bits (144), Expect = 3e-13
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 35 CFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFIS 93
C C K + ++ +E G ++H+ CF C+ C V+ S+ YC+ + F S
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAS 77
Query: 94 R 94
Sbjct: 78 G 78
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 56.3 bits (136), Expect = 4e-12
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 20 QPEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNG 79
G+ LC C + ++ K H CF C C L+ + Y G
Sbjct: 13 TKVHGGAGSAQRMPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEG 71
Query: 80 HLYCLPHFKQLFISR 94
LYC H +
Sbjct: 72 ELYCETHARARTSGP 86
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 55.8 bits (135), Expect = 5e-12
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
+C AC + + + GK +H F C +C + G YC H+ QLF
Sbjct: 5 VPICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 55.0 bits (133), Expect = 9e-12
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
SS C C K + + + +H+ CF CT C L + +T + YCL F L+
Sbjct: 5 SSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal
adhesion, acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 56.3 bits (136), Expect = 1e-11
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISR 94
C C++ ++ E + + + +H F C C ++L E Y M N C P + +
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV 65
Score = 46.6 bits (111), Expect = 6e-08
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFH--RACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88
+ +C C+ + P + + + +H CF C+ C L + + G ++C K
Sbjct: 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECK 122
Query: 89 QLF 91
+
Sbjct: 123 KRM 125
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 55.5 bits (134), Expect = 1e-11
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88
G + +C CN+ + + GK +H F C C + + G LYC ++
Sbjct: 22 GKRTPMCAHCNQVIRG-PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYE 80
Query: 89 QLFISR 94
+ F S
Sbjct: 81 KFFASG 86
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 54.8 bits (132), Expect = 1e-11
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
SS C C + V + ++FH CF C+ C LR + + YC +
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVAT 64
Query: 91 F 91
Sbjct: 65 L 65
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 54.7 bits (132), Expect = 1e-11
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
SS C CNK + I + +H CF C C L + +T YC+ +K
Sbjct: 5 SSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 53.9 bits (130), Expect = 3e-11
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
C C+K + + + +HR C CT C T L + +T + YC+ F +LF
Sbjct: 18 CARCSKTLTQ-GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 54.0 bits (130), Expect = 4e-11
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 35 CFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFIS 93
C C + + + + + + FH CFRC +C L E +T + L C + F S
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 77
Query: 94 R 94
Sbjct: 78 G 78
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 53.6 bits (129), Expect = 5e-11
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 21 PEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGH 80
+ S G +C C + ++ + H C+ CT C T L+ + +
Sbjct: 4 GSSGSIGNAQKLPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQ 62
Query: 81 LYCLPHFKQLFISR 94
+YC H ++
Sbjct: 63 IYCEKHARERVSGP 76
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 52.8 bits (127), Expect = 8e-11
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 30 NPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQ 89
+ SS C C + + I+ +H CFRC C VL + N G C P +
Sbjct: 3 SGSSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61
Query: 90 LF 91
Sbjct: 62 EK 63
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 53.9 bits (129), Expect = 1e-10
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 31 PSSLCFACNKKVYPLEKI-ETDGKLFHRACFRCTQCCTVLRM-ESYTMNNGHLYCLPHFK 88
LC +C+K++ E K++H CF+C C + + Y + N + C
Sbjct: 7 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 66
Query: 89 QLFISRGNYDEGFGSDQHKRKWQ 111
+ G GS
Sbjct: 67 EWTKINGGSGGSGGSGGDVMVVG 89
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 52.3 bits (126), Expect = 2e-10
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
S C CN+ V + ++H CF C C T S+ +G +C H+
Sbjct: 15 SPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73
Query: 92 ISR 94
S
Sbjct: 74 GSG 76
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein
1, LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 51.6 bits (124), Expect = 5e-10
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
SS C C K + K + + +H CFRC +C L E++ + + C +
Sbjct: 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE 64
Query: 91 FISR 94
+
Sbjct: 65 DSPK 68
Score = 34.7 bits (80), Expect = 0.001
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 35 CFACNKKVYPLEK-IETDGKLFHRACFRCTQC 65
C C K + ++ +E G ++H+ CF
Sbjct: 69 CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 52.2 bits (125), Expect = 1e-09
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFK 88
+ C AC + P + ++H CF C C L E Y M + L C ++
Sbjct: 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
Query: 89 QLFISR 94
Sbjct: 125 TAKQGG 130
Score = 44.8 bits (106), Expect = 5e-07
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 27 GTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPH 86
G+ +C C++ + ++ + +H C +C+ C L ++ +YC
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDD 59
Query: 87 FKQLF 91
F + F
Sbjct: 60 FFKRF 64
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 50.9 bits (122), Expect = 2e-09
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 31 PSSLCFACNKKVYPLEKI-ETDGKLFHRACFRCTQCCTVLRM-ESYTMNNGHLYCLPHFK 88
LC +C+K++ E K++H CF+C C + + Y + N + C
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
Query: 89 QLFISRG 95
+ G
Sbjct: 125 EWTKING 131
Score = 44.0 bits (104), Expect = 6e-07
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 34 LCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRME--SYTMNNGHLYCLPHFKQLF 91
C C + + ++ + +H C C C L G C + +LF
Sbjct: 4 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.0 bits (117), Expect = 2e-09
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 35 CFACNKKVYPLEK---IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
C C + L I + + +H CF C +C L + + C K +
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 49.0 bits (117), Expect = 2e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 35 CFACNKKVYPLEK----IETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQL 90
C C + K + +G+ +H CF C +C L + + + +YC K+L
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 48.6 bits (116), Expect = 4e-09
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
S C C +++ + + K +H +CF+C C +L Y +G YC + F
Sbjct: 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQF 73
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 49.6 bits (118), Expect = 1e-08
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRM-ESYTMNNGHLYCLPHFKQ 89
S C AC + + E + G ++H CF C+ C L + + NG L+C
Sbjct: 69 SGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPT 128
Query: 90 LFISR 94
I+
Sbjct: 129 ALING 133
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYT--MNNGHLYCLPHFKQLFI 92
C C K+ + +H C +C+ C L + +G + C + +LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 93 SRG 95
+ G
Sbjct: 68 NSG 70
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 49.1 bits (117), Expect = 1e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 32 SSLCFACNKKVYPLEK-IETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFK 88
+ C AC + P + ++H CF C C L E Y M + L C ++
Sbjct: 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Query: 89 Q 89
Sbjct: 179 T 179
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 19 NQPEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNN 78
+G +C C++ + ++ + +H C +C+ C L ++
Sbjct: 47 GSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS-RG 105
Query: 79 GHLYCLPHFKQLF 91
+YC F + F
Sbjct: 106 ESVYCKDDFFKRF 118
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 47.0 bits (112), Expect = 2e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTM-NNGHLYCLPHFKQLF 91
C C++ + + GK +H CF C C L +T+ ++C+ F + F
Sbjct: 18 CATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 47.8 bits (113), Expect = 2e-08
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 19 NQPEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRME--SYTM 76
G C C K+ + +H C +C+ C L S
Sbjct: 48 GGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT 107
Query: 77 NNGHLYCLPHFKQLF 91
+G + C + +LF
Sbjct: 108 KSGMILCRNDYIRLF 122
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 44.8 bits (106), Expect = 1e-07
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM--ESYTMNNGHLYCLPHFKQ 89
C C+ + + +H CF C C ++ + + LYC +
Sbjct: 15 GEFCHGCSLLMTGPF-MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73
Query: 90 LFISR 94
+
Sbjct: 74 VVSGP 78
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 44.8 bits (106), Expect = 1e-07
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFK 88
G +C C+ + + + +H F C C L ++ + G LYCLP
Sbjct: 12 GLGKYICQKCHAIIDE-QPLIFKNDPYHPDHFNCANCGKELTADAREL-KGELYCLPCHD 69
Query: 89 QLFISR 94
++ +S
Sbjct: 70 KMGVSG 75
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 44.5 bits (105), Expect = 1e-07
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 35 CFACNKKVYPL---EKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
C AC+K + L + I +H CF C +C L + + N ++C +
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMD 67
Query: 92 IS 93
Sbjct: 68 TD 69
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 44.6 bits (105), Expect = 4e-07
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYT--MNNGHLYCLPHFKQLFI 92
C C K+ + +H C +C+ C L + +G + C + +LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 93 SRGNYDEGFGSDQHKRKW 110
+ G G
Sbjct: 68 NSGAGGSGGHMGSGGDVM 85
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 40.9 bits (96), Expect = 4e-06
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRM-ESYTMNNGHLYCLPHFKQLFIS 93
CF+C++ + E + GK +H CF C C + T N C + +S
Sbjct: 18 CFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76
Query: 94 R 94
Sbjct: 77 G 77
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein;
NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 38.5 bits (89), Expect = 6e-05
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 34 LCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVL--RMESYTMNNGHLYCLPHFKQLF 91
C C + + ++ + +H C C C L G C + +L
Sbjct: 5 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64
Query: 92 ISRGN 96
S G+
Sbjct: 65 GSGGH 69
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 35.4 bits (81), Expect = 2e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACF 60
C C K VYP EK+ K +H+ACF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 34.1 bits (78), Expect = 0.001
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 35 CFACNKKVYPLEK-IETDGKLFH--RACFRCTQCCTVLRMESYTMNNGHLYC 83
C C+ + P + + + +H CF C+ C L + + G ++C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 33.9 bits (77), Expect = 0.002
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 31 PSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLR-MESYTMNNGHLYC 83
SS C +C K + +E K +H +C C +C + E + ++
Sbjct: 4 GSSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.50
Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 56/116 (48%)
Query: 22 EAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQCCTVLRMESYTMNNGHL 81
++ N G PS + + E+++ + N HL
Sbjct: 326 DSLENNEGVPSPM-LSI--SNLTQEQVQD----------YVNKT------------NSHL 360
Query: 82 YCLPHFKQLFISRGNYDEGF-----------------------GSDQHK-----RK 109
P KQ+ IS N + G DQ + RK
Sbjct: 361 ---PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 27.7 bits (61), Expect = 0.89
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 5 VPATSSKIAVKIILNQPEAPSNG--TGNPSSLCFACNKKVYPLEKIETDGKLF-HRACFR 61
+PA ++ + ++ N N +G P SL L K + L R F
Sbjct: 360 LPA-GKQVEISLV-N---GAKNLVVSGPPQSLYGLNLT----LRKAKAPSGLDQSRIPFS 410
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding
protein; NMR {Human papillomavirus type 16} SCOP:
g.90.1.1 PDB: 2ljz_A
Length = 75
Score = 26.4 bits (58), Expect = 0.95
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 35 CFACNKKVYPLEK--IETDGKLFHR-ACF---RCTQCCTVLRMESYT 75
C C K + P EK + FH RC C R T
Sbjct: 27 CINCQKPLSPEEKQRHLDKKQRFHNIRGRWTGRCMSCSRSSRTRRET 73
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 1.3
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 57 RACFRCTQCCTVLRMESYTMNNGHLYCL 84
R C C C + + + + C
Sbjct: 343 RVCIGCNVCIS-----RWEIGGPPMICT 365
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 26.5 bits (59), Expect = 2.4
Identities = 6/28 (21%), Positives = 6/28 (21%), Gaps = 5/28 (17%)
Query: 57 RACFRCTQCCTVLRMESYTMNNGHLYCL 84
C C Q C CL
Sbjct: 332 NTCIGCNQACL-----DQIFVGKVTSCL 354
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode,
structural genomics; 2.40A {Burkholderia pseudomallei
305}
Length = 160
Score = 25.9 bits (58), Expect = 2.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 16 IILNQPEAPSNGTGNPSSLCFACN 39
++L +PE P N TGN LC
Sbjct: 8 VVLVEPEIPPN-TGNVIRLCANTG 30
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 25.8 bits (57), Expect = 4.1
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 2 SF--FVPATSSKIAVKIILNQPEAPSNGTGNPSS 33
S PA + + + + QPE S +
Sbjct: 523 SAVSMSPAENPDFILYVTVQQPEHYSGIQLGEFA 556
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 26.0 bits (57), Expect = 4.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 70 RMESYTMNNGHLYCLPHFKQLFISRGNY 97
+ T +G++Y LP+ +SRG +
Sbjct: 113 VQRAITAPDGNIYYLPYVPDGLVSRGYF 140
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 25.1 bits (54), Expect = 6.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACFR 61
C C+ + + ET G H C
Sbjct: 183 CNICHSLLIQGQSCETCGIRMHLPCVA 209
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 25.3 bits (56), Expect = 6.9
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 6/28 (21%)
Query: 57 RACFRCTQCCTVLRMESYTMNNGHLYCL 84
R C C C S + + C
Sbjct: 346 RECIGCNICV------SGDLTMSPIRCT 367
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 25.0 bits (55), Expect = 8.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 81 LYCLPHFKQLFISRGNYDE 99
L L F+Q++I++ YDE
Sbjct: 346 LASLSTFQQMWITKQEYDE 364
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 24.8 bits (55), Expect = 8.8
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 83 CLPHFKQLFISRGNYDEGFGSDQHKRK 109
P +Q+ + +G +Q +
Sbjct: 124 TRPEIEQIIVGNN---KGVSDEQFELD 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.439
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,731,092
Number of extensions: 86366
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 93
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)