RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12714
(117 letters)
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 65.1 bits (159), Expect = 2e-16
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 61 RCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGNYDEGFG 102
RC+ C L + +Y +G +YC PHF QLF S+GNYDEGFG
Sbjct: 1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 42
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 47.4 bits (113), Expect = 1e-09
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 31 PSSLCFACNKKVYPLEKIETDGKLFHRACF 60
C C K VYP+E++ + ++FH +CF
Sbjct: 6 ARETCVECQKTVYPMERLLANQQVFHISCF 35
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 47.5 bits (113), Expect = 2e-09
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACF 60
LC C + +Y LE++ +G FHR+CF
Sbjct: 8 GDLCALCGEHLYVLERLCVNGHFFHRSCF 36
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 44.1 bits (104), Expect = 4e-08
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRACF 60
S C C + VY EK+ GK +H++CF
Sbjct: 15 SDGCPRCGQAVYAAEKVIGAGKSWHKSCF 43
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 34.0 bits (78), Expect = 2e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRAC 59
+S C C+K VY EK+ + GK +H+ C
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGKDWHKFC 29
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 35
Score = 33.4 bits (76), Expect = 4e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 24 PSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACF 60
P+ G G C C K VY E+++ +G FH++CF
Sbjct: 2 PNWGGGKK---CGVCQKAVYFAEEVQCEGSSFHKSCF 35
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 31.9 bits (72), Expect = 0.002
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACF 60
C AC + VY E+++ DG+ FHR CF
Sbjct: 3 CGACGRTVYHAEEVQCDGRSFHRCCF 28
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 31.4 bits (71), Expect = 0.002
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 35 CFACNKKVYPLEKIETDGKLFHRACF 60
C C K VYP EK+ K +H+ACF
Sbjct: 5 CARCGKIVYPTEKVNCLDKFWHKACF 30
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 31.2 bits (71), Expect = 0.003
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 60 FRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
F C QC + G YC F+ LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 30.4 bits (69), Expect = 0.005
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 62 CTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
CT C L + +T + YCL F L+
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 28
Score = 27.6 bits (61), Expect = 0.050
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 32 SSLCFACNKKVYPLEKIETDGKLFHRAC 59
+ C C VY EK+ GK +H+ C
Sbjct: 1 AEKCSRCGDSVYAAEKVIGAGKPWHKNC 28
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with
calponin homology, NICAL (MICAL1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 26.8 bits (59), Expect = 0.12
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 61 RCTQCCTVLRMESYTMN--NGHLYCLPHFKQ 89
RC C L Y + +GH YCL H Q
Sbjct: 1 RCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 31
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor
B 73 kDa, TFB1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 114
Score = 27.6 bits (61), Expect = 0.21
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 6 PATSSKIAVKIILNQPEAPSNGTGNPS 32
PA+S K+ +++I E+ +
Sbjct: 51 PASSEKMMLRLIGKVDESKKRKDNEGN 77
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.6 bits (56), Expect = 0.40
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 60 FRCTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
F C +C + G YC H+ QLF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 24.7 bits (54), Expect = 0.61
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 62 CTQCCTVLRMESYTMNNGHLYCLPHFKQ 89
CT C T L+ + + +YC H ++
Sbjct: 2 CTDCGTNLKQKGHFFVEDQIYCEKHARE 29
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 26.7 bits (58), Expect = 0.68
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 81 LYCLPHFKQLFISRGNYDEGFGSD--QHKR 108
L P F Q+ ++ +Y+E G +H
Sbjct: 224 LASTPEFYQVCHTKKDYEE-IGPSICRHNP 252
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 31
Score = 24.4 bits (53), Expect = 0.80
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 62 CTQCCTVLRMESYTMNNGHLYCLPHFKQ 89
C C L+ + Y G LYC H +
Sbjct: 2 CADCNLNLKQKGYFFVEGELYCETHARA 29
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 25.5 bits (55), Expect = 1.5
Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 8 TSSKIAVK---IILNQPEAPSNGTGNPSSLCFACNKKVYPLEKIETDGKLFHRACFRCTQ 64
++ + ++ I++N+P + + L K + T +
Sbjct: 10 ANTLVFLRGKGIVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIAD 69
Query: 65 CCTVLRMESYTMNNGHLYCLPHFKQLFISRGNY 97
L M Y +N ++ I
Sbjct: 70 YTVALVMLRYFINKAKGGMNLFKPRVVIGVPIG 102
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 25.5 bits (55), Expect = 1.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 81 LYCLPHFKQLFISRGNYDE 99
L L F+Q++I++ YDE
Sbjct: 200 LASLSTFQQMWITKQEYDE 218
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 23.5 bits (51), Expect = 2.3
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 61 RCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRG-NYDEGFGSDQH 106
RC +C L + +G +YC + + F +G + +G G+ H
Sbjct: 1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIH 47
>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x),
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 368
Score = 24.3 bits (51), Expect = 4.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 4 FVPATSSKIAVKIILNQPEAPSNGTGNP 31
PA + + + + QPE S
Sbjct: 312 MSPAENPDFILYVTVQQPEHYSGIQLGE 339
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.1 bits (47), Expect = 6.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 62 CTQCCTVLRMESYTMNNGHLYCLPHFKQLF 91
C C + + G LYC +++ F
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFF 31
>d2h7zb1 g.7.1.1 (B:1-77) Irditoxin subunit B {Brown tree snake
(Boiga irregularis) [TaxId: 92519]}
Length = 77
Score = 22.9 bits (49), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 29 GNPSSLCFACNKKVYPLEKIETDGKLFHRACF 60
G P +LCF CN++ + +HR C+
Sbjct: 4 GPPYTLCFECNRETCSNCFKDNRCPPYHRTCY 35
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 22.5 bits (48), Expect = 7.3
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 34 LCFACNKKVYPLEKIETDGKLFHRACFR 61
LC C K + +++ ++C+
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYG 28
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor
complex p62 subunit (BTF2-p62), N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 23.2 bits (50), Expect = 7.6
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 6 PATSSKIAVKIILNQPEA 23
P +KI ++++L+ +
Sbjct: 57 PEGKAKIQLQLVLHAGDT 74
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 22.7 bits (48), Expect = 9.3
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 60 FRCTQCCTVLRMESYTMNNGHLYCLPHFKQLFISRGN 96
C C +++ E + H++C +L +
Sbjct: 22 LECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKG 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.439
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,789
Number of extensions: 19088
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 49
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)