BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12719
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+++++ ++ ++ N EA Q D+D A EY+ +++ +DP NA + +
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ +G+ DEAI+ +KA+ +D + A + LG + ++
Sbjct: 85 NAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
N EA Q D+D A EY+ +++ +DP NA + + + +G+ DEAI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIE 64
Query: 85 LIEKAISIDKSCMFAYETLGT 105
+KA+ +D + A+ LG
Sbjct: 65 YYQKALELDPNNAEAWYNLGN 85
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
N EA Q D+D A EY+ +++ +DP NA + + + +G+ DEAI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIE 64
Query: 85 LIEKAISIDKSCMFAYETLGTIEVQR 110
+KA+ +D + A + LG + ++
Sbjct: 65 YYQKALELDPNNAEAKQNLGNAKQKQ 90
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 62
+++++ ++ ++ N EA Q D+D A EY+ +++ +DP NA
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+++++ ++ ++ EA Q D+D A EY+ +++ +DP +A + +
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105
+ +G+ DEAI+ +KA+ +D A+ LG
Sbjct: 77 NAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGN 111
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
EA Q D+D A EY+ +++ +DP +A + + + +G+ DEAI+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ 59
Query: 88 KAISIDKSCMFAYETLGT 105
KA+ +D A+ LG
Sbjct: 60 KALELDPRSAEAWYNLGN 77
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+++++ ++ ++ EA Q D+D A EY+ +++ +DP +A + +
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Query: 70 MLMLQARGNVDEAIKLIEKAISID 93
+ +G+ DEAI+ +KA+ +D
Sbjct: 111 NAYYK-QGDYDEAIEYYQKALELD 133
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59
+++++ ++ ++ EA Q D+D A EY+ +++ +DP
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+++++ ++ ++ + N EA Q D+D A EY+ +++ + P NA + +
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ +G+ DEAI+ +KA+ + + A + LG + ++
Sbjct: 85 NAYYK-QGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQ 124
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
N EA Q D+D A EY+ +++ + P NA + + + +G+ DEAI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-QGDYDEAIE 64
Query: 85 LIEKAISIDKSCMFAYETLGT 105
+KA+ + + A+ LG
Sbjct: 65 YYQKALELYPNNAEAWYNLGN 85
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+++++ ++ ++ N A Q D+ A EY+ +++ +DP NA + R
Sbjct: 25 YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ +G+ +AI+ +KA+ +D + A + LG + ++
Sbjct: 85 NAYYK-QGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
N EA Q D+ A EY+ +++ +DP NAS + + + +G+ +AI+
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIE 64
Query: 85 LIEKAISIDKSCMFAYETLGT 105
+KA+ +D + A+ G
Sbjct: 65 YYQKALELDPNNAKAWYRRGN 85
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 24 HSNVVEACTLF---------AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--M 72
H ++ +A LF A ++ D+ D YF++++++D N+S+Y HR + +
Sbjct: 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
LQ N D+A K +KA +D +F Y L +
Sbjct: 317 LQ---NYDQAGKDFDKAKELDPENIFPYIQLACL 347
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------GNVD 80
E FA++L D+ DFD A + ++ +I ++ + +YV A L+ +A N
Sbjct: 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432
Query: 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
EA L+EKA +D A L +++Q+
Sbjct: 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
EA Q D+D A EY+ +++ +DP +A + + + +G+ DEAI+ +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ 61
Query: 88 KAISID 93
KA+ +D
Sbjct: 62 KALELD 67
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59
+++++ ++ ++ EA Q D+D A EY+ +++ +DP
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101
E+F+ A ++ ++I ++P NA + +RA + GN A++ E+AI ID + AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 102 TLG 104
+G
Sbjct: 85 RMG 87
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+R +++++++ +R+ + + ++ A LV D +GA + + +++ +P+ LY
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---LY 135
Query: 66 VHRAML--MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
R+ L +L+A G ++EA KAI + A+ LG +
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
++ ++ +R ++ + +A A L ++ AE+ +N ++R+ P +A + A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ + +GN++EA++L KA+ + A+ L ++ Q+
Sbjct: 313 NIK-REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
A + +Q + + A + +++ V PE A+ + + A + LQ +G + EA+ ++AI I
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGKLQEALMHYKEAIRIS 369
Query: 94 KSCMFAYETLG 104
+ AY +G
Sbjct: 370 PTFADAYSNMG 380
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
R+E++ + ++T N A + V Q + A +F +++ +DP Y++
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115
++ +AR D A+ +A+S+ + + L + ++ + L
Sbjct: 210 GNVLKEAR-IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
DF+ AE + + R +P+N + + + + Q R +D + AI + AY
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 103 LGTIEVQR 110
LG + +R
Sbjct: 73 LGNVYKER 80
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
Q+DF+ A +++++I +DP N + Y ++A + + + E ++ EKA+ + + Y
Sbjct: 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADY 79
Query: 101 ETLG 104
+ +
Sbjct: 80 KLIA 83
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
D++ A E F ++I + E+A Y++ A L L + ++ A+ +KA+ +D S AY
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANL-LSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 103 LGTIEV 108
G + V
Sbjct: 97 AGNVYV 102
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein,
T-Mod(Vmy), In Complex With Meevf Peptide
Length = 128
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
++DFD A ++++++ +DP N + V++A + + +G+ ++ +L EKAI +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFE-KGDYNKCRELCEKAIEV 67
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVDEAIKLIEKAIS 91
D+ A ++N +++ DPENA LY +RA + + A + D I+L K I
Sbjct: 28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEV 67
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEV 67
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71
+SLK+F +DT S A ++D++ A + R+I ++ A Y ++ L
Sbjct: 60 ESLKKFV-VLDTTSAEAYYILGSANFMIDEKQ--AAIDALQRAIALNTVYADAY-YKLGL 115
Query: 72 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ + G D+AI+ EK ISI + AY+++G
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+ DFDGA + + ++ DP N + + G ++AI+ ++K + +D + AY
Sbjct: 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVLDTTSAEAY 76
Query: 101 ETLGT 105
LG+
Sbjct: 77 YILGS 81
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
A + +Q + + A + +++ V PE A+ + + A + LQ +G + EA+ ++AI I
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGKLQEALMHYKEAIRIS 73
Query: 94 KSCMFAYETLG 104
+ AY +G
Sbjct: 74 PTFADAYSNMG 84
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 74 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ +GN++EA++L KA+ + A+ L ++ Q+
Sbjct: 20 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 56
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
D+E ++ K F+ VD + Q+ +D+ A+E F ++ ++PEN
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346
Query: 65 YVHRAMLMLQ 74
Y+ A L+ +
Sbjct: 347 YIQLACLLYK 356
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR----------GN 78
E T FA++L D+ DFD A + ++ + R++ ++V L+ +A
Sbjct: 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438
Query: 79 VDE-----AIKLIEKAISIDKSCMFAYETLGTIEVQ 109
+DE AIKL+ KA +D A L +++Q
Sbjct: 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--MLQARGNVDEAIKLIEKAI 90
A L D+E+ ++F +++ ++PE Y HR + +LQ N E +KA
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED---FQKAQ 337
Query: 91 SIDKSCMFAYETLGTI 106
S++ ++ Y L +
Sbjct: 338 SLNPENVYPYIQLACL 353
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVDEAIKLIEKAI 90
+D++ A ++++++I ++P NA Y +R++ L+ A G+ AI+L +K I
Sbjct: 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
D+E ++ K F+ VD + Q+ +D+ A+E F ++ ++PEN
Sbjct: 283 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 342
Query: 65 YVHRAMLMLQ 74
Y+ A L+ +
Sbjct: 343 YIQLACLLYK 352
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR----------GN 78
E T FA++L D+ DFD A + ++ + R++ ++V L+ +A
Sbjct: 375 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 434
Query: 79 VDE-----AIKLIEKAISIDKSCMFAYETLGTIEVQ 109
+DE AIKL+ KA +D A L +++Q
Sbjct: 435 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 470
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--MLQARGNVDEAIKLIEKAI 90
A L D+E+ ++F +++ ++PE Y HR + +LQ N E +KA
Sbjct: 277 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED---FQKAQ 333
Query: 91 SIDKSCMFAYETLGTI 106
S++ ++ Y L +
Sbjct: 334 SLNPENVYPYIQLACL 349
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVDEAIKLIEKAI 90
+D++ A ++++++I ++P NA Y +R++ L+ A G+ AI+L +K I
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+D++ A ++++++I ++P NA Y +R++ L+ A+ +AI +DK + Y
Sbjct: 35 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALNDATRAIELDKKYIKGY 92
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
++ E L+ ++ + + E L + + Q D+ + + +++++ ENA L
Sbjct: 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80
Query: 65 YVHRA-MLMLQARGNVDEAIK-LIEKAISIDKSCMFAYETLGT 105
Y A +L QA ++ + +I+KA+++D + + A L +
Sbjct: 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
>pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 917
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 18 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG 77
R+ + +S +V+ C F + E F + YF IR + Y+H A+ + +ARG
Sbjct: 141 RSLLRGNSALVDECVAFYE-----EHF--PDRYFLELIRTGRPDEESYLHAAVELAEARG 193
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 18 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG 77
R+ + +S +V+ C F + E F + YF IR + Y+H A+ + +ARG
Sbjct: 141 RSLLRGNSALVDECVAFYE-----EHF--PDRYFLELIRTGRPDEESYLHAAVELAEARG 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,053,116
Number of Sequences: 62578
Number of extensions: 101769
Number of successful extensions: 386
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 49
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)