Query psy12719
Match_columns 116
No_of_seqs 251 out of 1073
Neff 12.1
Searched_HMMs 46136
Date Fri Aug 16 17:55:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.9 2.6E-21 5.5E-26 103.7 12.1 107 4-111 34-140 (144)
2 KOG0553|consensus 99.9 5.7E-21 1.2E-25 109.8 11.2 109 5-114 92-200 (304)
3 PRK10370 formate-dependent nit 99.9 5.4E-20 1.2E-24 103.1 12.7 111 6-116 51-163 (198)
4 PRK15359 type III secretion sy 99.8 1.4E-19 2.9E-24 97.0 9.8 100 13-116 12-111 (144)
5 KOG4626|consensus 99.8 1.5E-19 3.4E-24 113.0 10.6 113 3-116 295-407 (966)
6 COG3063 PilF Tfp pilus assembl 99.8 3.6E-19 7.7E-24 99.3 10.1 113 3-116 44-158 (250)
7 TIGR00990 3a0801s09 mitochondr 99.8 4.5E-19 9.7E-24 113.7 12.1 109 6-115 377-485 (615)
8 TIGR00990 3a0801s09 mitochondr 99.8 5.1E-19 1.1E-23 113.4 11.9 112 4-116 341-452 (615)
9 KOG4626|consensus 99.8 3.2E-19 7E-24 111.6 8.5 107 7-114 333-439 (966)
10 PLN03088 SGT1, suppressor of 99.8 6.6E-18 1.4E-22 102.1 13.2 105 5-110 13-117 (356)
11 KOG1155|consensus 99.8 2.7E-18 5.8E-23 104.0 11.3 109 7-116 343-451 (559)
12 PRK15363 pathogenicity island 99.8 1.4E-17 3E-22 88.8 12.2 89 5-94 46-134 (157)
13 PRK11189 lipoprotein NlpI; Pro 99.8 5.8E-18 1.3E-22 100.3 11.7 93 4-97 74-166 (296)
14 PRK12370 invasion protein regu 99.8 6.5E-18 1.4E-22 107.2 12.6 108 7-115 317-424 (553)
15 COG3063 PilF Tfp pilus assembl 99.8 2.9E-18 6.4E-23 95.7 9.0 113 3-116 78-192 (250)
16 PRK09782 bacteriophage N4 rece 99.8 1E-17 2.2E-22 111.2 12.9 108 7-116 589-696 (987)
17 PRK12370 invasion protein regu 99.8 8E-18 1.7E-22 106.8 11.8 112 4-116 348-460 (553)
18 TIGR02552 LcrH_SycD type III s 99.8 1.1E-17 2.3E-22 88.9 10.2 96 4-100 27-122 (135)
19 TIGR02552 LcrH_SycD type III s 99.8 4.6E-17 1E-21 86.4 11.5 101 15-116 4-104 (135)
20 KOG1126|consensus 99.8 5.8E-18 1.3E-22 105.6 8.3 107 8-115 469-575 (638)
21 PF13429 TPR_15: Tetratricopep 99.8 5.7E-18 1.2E-22 99.7 7.8 112 4-116 156-267 (280)
22 PRK15174 Vi polysaccharide exp 99.7 5.1E-17 1.1E-21 104.8 11.9 111 5-116 223-337 (656)
23 KOG1155|consensus 99.7 5E-17 1.1E-21 98.6 10.9 112 4-116 374-485 (559)
24 PRK11189 lipoprotein NlpI; Pro 99.7 1.8E-16 3.9E-21 94.0 13.0 109 7-116 39-151 (296)
25 COG5010 TadD Flp pilus assembl 99.7 1.1E-16 2.5E-21 90.7 11.4 111 5-116 111-221 (257)
26 PRK15179 Vi polysaccharide bio 99.7 1.1E-16 2.4E-21 103.2 12.3 111 5-116 97-207 (694)
27 TIGR02521 type_IV_pilW type IV 99.7 1.8E-16 3.8E-21 90.3 11.8 85 6-91 43-127 (234)
28 TIGR02521 type_IV_pilW type IV 99.7 1.8E-16 3.8E-21 90.3 11.8 113 3-116 74-188 (234)
29 PRK15363 pathogenicity island 99.7 1.2E-16 2.6E-21 85.3 9.7 95 21-116 27-122 (157)
30 KOG1126|consensus 99.7 1.3E-16 2.8E-21 99.8 10.9 114 2-116 497-610 (638)
31 PRK09782 bacteriophage N4 rece 99.7 2.2E-16 4.9E-21 105.0 11.4 112 3-115 618-729 (987)
32 KOG0547|consensus 99.7 9.9E-17 2.1E-21 97.9 8.8 113 3-116 369-481 (606)
33 PRK15174 Vi polysaccharide exp 99.7 3.5E-16 7.5E-21 101.1 11.6 112 4-116 256-371 (656)
34 PRK10370 formate-dependent nit 99.7 9E-16 2E-20 86.2 11.4 94 3-97 82-178 (198)
35 PF13414 TPR_11: TPR repeat; P 99.7 2E-16 4.2E-21 74.9 7.2 67 27-94 2-69 (69)
36 TIGR02917 PEP_TPR_lipo putativ 99.7 6.3E-16 1.4E-20 101.7 11.9 111 4-116 780-890 (899)
37 KOG1125|consensus 99.7 2.1E-16 4.5E-21 97.7 8.3 111 3-114 439-559 (579)
38 PRK11447 cellulose synthase su 99.7 8.6E-16 1.9E-20 104.3 11.6 112 4-116 279-404 (1157)
39 KOG1125|consensus 99.7 2.8E-16 6E-21 97.2 8.2 108 8-116 408-517 (579)
40 PRK11447 cellulose synthase su 99.7 1.7E-15 3.8E-20 102.9 12.2 111 5-116 362-514 (1157)
41 TIGR02917 PEP_TPR_lipo putativ 99.7 1.7E-15 3.7E-20 99.7 11.9 112 4-116 135-246 (899)
42 PF12895 Apc3: Anaphase-promot 99.7 6E-16 1.3E-20 75.9 7.2 82 6-89 1-84 (84)
43 COG4783 Putative Zn-dependent 99.7 2.5E-15 5.4E-20 91.6 11.0 111 4-115 316-426 (484)
44 TIGR03302 OM_YfiO outer membra 99.7 3.1E-15 6.7E-20 86.1 10.4 110 5-115 81-221 (235)
45 TIGR03302 OM_YfiO outer membra 99.7 2.8E-15 6.2E-20 86.3 9.9 112 4-116 43-185 (235)
46 PRK10049 pgaA outer membrane p 99.7 4.7E-15 1E-19 97.4 12.0 110 3-114 58-167 (765)
47 TIGR02795 tol_pal_ybgF tol-pal 99.7 8.6E-15 1.9E-19 75.9 10.7 98 4-102 12-115 (119)
48 PRK11788 tetratricopeptide rep 99.7 5.2E-15 1.1E-19 90.5 11.1 109 6-115 119-232 (389)
49 COG4235 Cytochrome c biogenesi 99.6 1.4E-14 3.1E-19 84.0 12.1 108 9-116 137-246 (287)
50 KOG0548|consensus 99.6 7.8E-15 1.7E-19 90.3 11.0 105 4-109 368-472 (539)
51 PF13432 TPR_16: Tetratricopep 99.6 3.8E-15 8.2E-20 69.7 7.7 64 33-97 2-65 (65)
52 KOG0547|consensus 99.6 4E-15 8.8E-20 91.1 9.4 111 6-116 440-556 (606)
53 PRK11788 tetratricopeptide rep 99.6 1.7E-14 3.6E-19 88.3 11.9 112 4-116 45-160 (389)
54 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.9E-20 89.7 6.5 112 4-116 120-233 (280)
55 cd00189 TPR Tetratricopeptide 99.6 1.7E-14 3.7E-19 71.4 9.3 91 4-95 10-100 (100)
56 COG5010 TadD Flp pilus assembl 99.6 1.4E-14 3.1E-19 82.3 9.7 109 7-116 79-187 (257)
57 KOG0553|consensus 99.6 1.4E-14 3.1E-19 83.9 8.7 87 29-116 82-168 (304)
58 PLN02789 farnesyltranstransfer 99.6 3.9E-14 8.5E-19 84.6 10.7 105 8-113 51-158 (320)
59 PRK10803 tol-pal system protei 99.6 1.5E-13 3.3E-18 80.0 12.8 94 6-100 155-254 (263)
60 KOG2076|consensus 99.6 8.6E-14 1.9E-18 90.0 12.5 110 6-116 151-260 (895)
61 PRK10049 pgaA outer membrane p 99.6 9E-14 2E-18 91.5 12.7 110 5-116 26-135 (765)
62 PRK15331 chaperone protein Sic 99.6 9E-14 1.9E-18 74.8 10.3 93 5-99 48-140 (165)
63 PRK02603 photosystem I assembl 99.6 1.9E-13 4.1E-18 75.4 11.4 92 4-96 45-153 (172)
64 PLN03088 SGT1, suppressor of 99.6 8.4E-14 1.8E-18 84.5 10.1 85 31-116 5-89 (356)
65 COG2956 Predicted N-acetylgluc 99.6 7.8E-14 1.7E-18 81.8 9.1 113 2-115 149-267 (389)
66 PF09295 ChAPs: ChAPs (Chs5p-A 99.5 3.8E-13 8.3E-18 82.1 12.1 107 6-116 181-287 (395)
67 KOG0543|consensus 99.5 2.4E-13 5.1E-18 81.7 11.0 108 4-112 218-340 (397)
68 CHL00033 ycf3 photosystem I as 99.5 5.7E-13 1.2E-17 73.3 11.8 91 5-96 46-153 (168)
69 PF13432 TPR_16: Tetratricopep 99.5 2.3E-14 5.1E-19 67.0 5.3 60 3-62 6-65 (65)
70 cd00189 TPR Tetratricopeptide 99.5 2E-13 4.2E-18 67.5 8.9 86 30-116 2-87 (100)
71 KOG0548|consensus 99.5 1.9E-13 4.1E-18 84.3 10.3 103 4-107 12-114 (539)
72 KOG3060|consensus 99.5 3.8E-13 8.1E-18 76.6 10.0 108 7-115 65-172 (289)
73 CHL00033 ycf3 photosystem I as 99.5 5.5E-13 1.2E-17 73.3 10.4 99 9-108 14-117 (168)
74 PF09976 TPR_21: Tetratricopep 99.5 1.3E-12 2.9E-17 70.2 11.6 109 6-116 23-137 (145)
75 PF14559 TPR_19: Tetratricopep 99.5 1.5E-13 3.2E-18 64.8 6.9 62 7-68 4-65 (68)
76 PLN02789 farnesyltranstransfer 99.5 1.4E-12 3.1E-17 78.0 12.4 101 9-110 87-189 (320)
77 KOG1173|consensus 99.5 2E-13 4.4E-18 84.8 8.6 73 31-104 458-530 (611)
78 PF14559 TPR_19: Tetratricopep 99.5 1.9E-13 4.2E-18 64.3 6.8 67 39-106 2-68 (68)
79 PRK14574 hmsH outer membrane p 99.5 7.2E-13 1.6E-17 87.3 11.5 114 2-116 42-155 (822)
80 PF13414 TPR_11: TPR repeat; P 99.5 6.8E-14 1.5E-18 66.1 5.1 57 3-59 12-69 (69)
81 PRK15179 Vi polysaccharide bio 99.5 1.2E-12 2.5E-17 85.0 12.1 99 17-116 75-173 (694)
82 PF13371 TPR_9: Tetratricopept 99.5 4.5E-13 9.8E-18 63.9 7.7 69 35-104 2-70 (73)
83 KOG3060|consensus 99.5 1.3E-12 2.8E-17 74.5 10.6 108 4-112 96-203 (289)
84 TIGR02795 tol_pal_ybgF tol-pal 99.5 1E-12 2.2E-17 68.1 9.6 88 28-116 2-95 (119)
85 COG1729 Uncharacterized protei 99.5 3E-12 6.4E-17 73.7 11.5 98 4-102 151-254 (262)
86 KOG4162|consensus 99.5 8.5E-13 1.8E-17 84.4 10.0 110 6-116 662-773 (799)
87 PRK02603 photosystem I assembl 99.5 1.6E-12 3.4E-17 71.8 9.4 87 26-113 33-122 (172)
88 KOG0550|consensus 99.5 1.1E-12 2.4E-17 79.2 8.5 109 6-115 215-339 (486)
89 KOG1156|consensus 99.4 1.3E-12 2.8E-17 82.4 8.7 109 5-114 18-126 (700)
90 KOG4234|consensus 99.4 7.5E-12 1.6E-16 69.5 10.3 101 5-106 106-211 (271)
91 TIGR00540 hemY_coli hemY prote 99.4 7.8E-12 1.7E-16 77.4 11.6 111 5-116 95-206 (409)
92 KOG1129|consensus 99.4 1.6E-12 3.4E-17 76.9 7.9 111 5-116 335-448 (478)
93 PF12895 Apc3: Anaphase-promot 99.4 2.1E-13 4.6E-18 66.8 3.8 75 40-116 1-77 (84)
94 PF13371 TPR_9: Tetratricopept 99.4 1.6E-12 3.5E-17 62.0 6.6 68 3-70 4-71 (73)
95 cd05804 StaR_like StaR_like; a 99.4 4.7E-12 1E-16 76.9 9.8 87 29-116 115-205 (355)
96 PRK15331 chaperone protein Sic 99.4 2.6E-12 5.7E-17 69.2 7.7 90 26-116 35-124 (165)
97 KOG0495|consensus 99.4 8.9E-12 1.9E-16 79.3 10.9 111 5-116 662-772 (913)
98 cd05804 StaR_like StaR_like; a 99.4 5.6E-12 1.2E-16 76.5 9.8 90 4-94 124-217 (355)
99 KOG2003|consensus 99.4 5.4E-12 1.2E-16 77.7 9.6 111 5-116 501-611 (840)
100 KOG2002|consensus 99.4 9.2E-13 2E-17 86.1 6.1 108 7-115 625-734 (1018)
101 KOG4648|consensus 99.4 2.8E-12 6E-17 76.4 7.6 103 3-106 106-208 (536)
102 COG4235 Cytochrome c biogenesi 99.4 2.8E-11 6E-16 70.6 11.5 93 3-96 165-260 (287)
103 PLN03098 LPA1 LOW PSII ACCUMUL 99.4 5.9E-12 1.3E-16 77.2 9.1 69 23-92 70-141 (453)
104 TIGR00540 hemY_coli hemY prote 99.4 1.2E-11 2.7E-16 76.5 10.4 111 4-116 273-389 (409)
105 PRK10153 DNA-binding transcrip 99.4 3.3E-11 7.1E-16 76.3 12.2 109 6-116 354-472 (517)
106 KOG1128|consensus 99.4 3.7E-12 8E-17 81.3 7.6 110 6-116 497-606 (777)
107 PRK11906 transcriptional regul 99.4 4.9E-11 1.1E-15 73.4 11.7 106 9-115 273-390 (458)
108 KOG1129|consensus 99.4 3.8E-12 8.2E-17 75.4 6.5 106 7-113 303-411 (478)
109 PRK14574 hmsH outer membrane p 99.3 3E-11 6.6E-16 79.9 11.0 106 4-111 112-217 (822)
110 PRK10803 tol-pal system protei 99.3 3.9E-11 8.5E-16 70.1 10.3 87 29-116 143-236 (263)
111 PF13512 TPR_18: Tetratricopep 99.3 7.5E-11 1.6E-15 62.3 10.2 94 5-99 21-135 (142)
112 PRK10747 putative protoheme IX 99.3 1.2E-10 2.5E-15 72.0 12.7 109 7-116 97-206 (398)
113 KOG1173|consensus 99.3 8.9E-12 1.9E-16 77.7 7.5 111 5-116 323-433 (611)
114 PF12688 TPR_5: Tetratrico pep 99.3 7.7E-11 1.7E-15 61.1 9.8 87 4-91 11-103 (120)
115 KOG0550|consensus 99.3 1.8E-11 3.8E-16 74.1 8.4 90 5-95 260-353 (486)
116 KOG4162|consensus 99.3 2.4E-11 5.2E-16 78.1 9.4 93 5-98 695-789 (799)
117 KOG1156|consensus 99.3 3.4E-11 7.4E-16 76.2 9.9 112 4-116 51-162 (700)
118 KOG1840|consensus 99.3 1.6E-11 3.5E-16 77.1 8.3 113 3-116 208-344 (508)
119 PF04733 Coatomer_E: Coatomer 99.3 1.4E-10 3.1E-15 68.8 11.5 110 3-113 140-251 (290)
120 KOG2076|consensus 99.3 6.8E-11 1.5E-15 77.0 10.7 109 7-116 392-502 (895)
121 KOG1840|consensus 99.3 1.6E-11 3.5E-16 77.1 7.7 113 3-116 250-386 (508)
122 PRK14720 transcript cleavage f 99.3 4E-11 8.8E-16 79.3 9.8 109 4-116 41-168 (906)
123 PRK11906 transcriptional regul 99.3 2.9E-10 6.3E-15 70.1 12.6 90 7-97 317-406 (458)
124 PRK10747 putative protoheme IX 99.3 1E-10 2.2E-15 72.3 10.7 107 5-116 274-380 (398)
125 PRK10866 outer membrane biogen 99.3 3.6E-10 7.7E-15 65.6 12.2 91 5-96 43-157 (243)
126 KOG0624|consensus 99.3 9.2E-11 2E-15 70.1 9.9 100 6-106 50-152 (504)
127 PF12688 TPR_5: Tetratrico pep 99.3 2.6E-10 5.7E-15 59.2 10.3 87 29-116 2-94 (120)
128 PF09976 TPR_21: Tetratricopep 99.3 9.8E-11 2.1E-15 63.0 9.1 85 4-90 58-145 (145)
129 KOG2002|consensus 99.3 7E-11 1.5E-15 77.6 9.7 104 5-109 318-426 (1018)
130 PF13525 YfiO: Outer membrane 99.3 3.4E-10 7.3E-15 64.1 10.9 94 4-97 15-124 (203)
131 COG4783 Putative Zn-dependent 99.2 6.7E-10 1.5E-14 68.5 11.8 98 4-102 350-447 (484)
132 PF13424 TPR_12: Tetratricopep 99.2 2.3E-11 5.1E-16 58.7 4.5 67 25-92 2-75 (78)
133 PF06552 TOM20_plant: Plant sp 99.2 6.2E-10 1.4E-14 60.8 10.2 98 9-106 6-123 (186)
134 COG2956 Predicted N-acetylgluc 99.2 2.4E-10 5.1E-15 67.6 9.1 112 4-116 117-233 (389)
135 COG4785 NlpI Lipoprotein NlpI, 99.2 2.9E-10 6.2E-15 64.1 8.3 94 3-97 74-167 (297)
136 PRK10153 DNA-binding transcrip 99.2 1.4E-09 3E-14 69.1 11.8 89 8-98 398-488 (517)
137 KOG1127|consensus 99.2 6E-10 1.3E-14 73.8 9.2 105 3-108 571-675 (1238)
138 KOG1128|consensus 99.1 1.5E-10 3.3E-15 74.2 6.1 111 3-115 433-571 (777)
139 KOG4642|consensus 99.1 5.2E-10 1.1E-14 63.7 7.6 87 5-92 21-107 (284)
140 KOG4555|consensus 99.1 5.1E-09 1.1E-13 54.7 10.6 91 5-96 54-148 (175)
141 KOG0543|consensus 99.1 7.4E-10 1.6E-14 67.1 8.6 93 2-94 265-357 (397)
142 COG1729 Uncharacterized protei 99.1 1.3E-09 2.9E-14 63.1 9.2 85 31-116 144-234 (262)
143 PF13428 TPR_14: Tetratricopep 99.1 3.5E-10 7.6E-15 48.6 4.6 41 29-69 2-42 (44)
144 PF12569 NARP1: NMDA receptor- 99.1 4.9E-09 1.1E-13 66.6 11.3 111 4-115 204-323 (517)
145 KOG1174|consensus 99.1 1.7E-09 3.7E-14 66.1 8.7 112 4-116 242-387 (564)
146 KOG4648|consensus 99.1 3.3E-10 7.2E-15 67.8 5.6 85 31-116 100-184 (536)
147 KOG1127|consensus 99.1 5.7E-10 1.2E-14 73.9 6.7 108 7-115 505-648 (1238)
148 KOG2003|consensus 99.1 3E-09 6.5E-14 66.0 9.4 111 4-115 534-678 (840)
149 KOG0376|consensus 99.1 4.7E-10 1E-14 69.1 5.9 103 5-108 15-117 (476)
150 PF13525 YfiO: Outer membrane 99.1 8.4E-09 1.8E-13 58.5 10.5 84 27-111 4-93 (203)
151 KOG0495|consensus 99.1 4E-09 8.6E-14 67.7 9.7 83 29-112 652-734 (913)
152 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 3.6E-09 7.9E-14 65.0 9.1 84 6-90 212-295 (395)
153 PRK10866 outer membrane biogen 99.0 1.3E-08 2.8E-13 59.2 10.8 83 27-110 31-119 (243)
154 PF13512 TPR_18: Tetratricopep 99.0 2.8E-08 6.1E-13 52.7 10.9 84 28-112 10-99 (142)
155 PF13428 TPR_14: Tetratricopep 99.0 1.5E-09 3.2E-14 46.7 5.0 43 62-105 1-43 (44)
156 KOG4642|consensus 99.0 1E-09 2.2E-14 62.5 5.3 84 32-116 14-97 (284)
157 COG4700 Uncharacterized protei 99.0 3.2E-08 7E-13 54.8 10.7 109 5-115 100-211 (251)
158 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.1E-09 4.6E-14 66.3 6.6 59 57-116 70-131 (453)
159 PF04733 Coatomer_E: Coatomer 99.0 5.9E-09 1.3E-13 62.0 7.9 91 8-99 181-272 (290)
160 KOG1174|consensus 99.0 1.4E-08 3E-13 62.3 9.2 99 5-104 311-409 (564)
161 PF12569 NARP1: NMDA receptor- 99.0 1.7E-08 3.7E-13 64.2 10.0 86 30-116 196-281 (517)
162 KOG4555|consensus 99.0 3.7E-08 8E-13 51.6 9.2 86 30-116 45-134 (175)
163 KOG0624|consensus 99.0 3.5E-08 7.5E-13 59.4 10.3 95 4-99 165-259 (504)
164 PF13431 TPR_17: Tetratricopep 98.9 1.3E-09 2.8E-14 44.1 2.7 31 17-47 2-32 (34)
165 PF13431 TPR_17: Tetratricopep 98.9 2.1E-09 4.6E-14 43.5 2.8 32 51-83 2-33 (34)
166 PRK14720 transcript cleavage f 98.9 3.9E-08 8.5E-13 65.7 10.0 104 3-108 125-268 (906)
167 KOG4234|consensus 98.9 3.6E-08 7.8E-13 55.2 7.6 87 29-116 96-187 (271)
168 KOG0545|consensus 98.9 9.9E-08 2.2E-12 55.0 9.3 92 5-97 189-298 (329)
169 PLN03081 pentatricopeptide (PP 98.8 4.7E-08 1E-12 64.5 9.3 109 5-116 437-547 (697)
170 PF13424 TPR_12: Tetratricopep 98.8 4.6E-09 1E-13 50.6 3.2 55 3-57 14-75 (78)
171 PLN03077 Protein ECB2; Provisi 98.8 1.5E-07 3.2E-12 63.5 10.9 110 4-116 599-710 (857)
172 KOG4340|consensus 98.8 2.1E-07 4.6E-12 55.2 10.2 54 62-116 144-197 (459)
173 PF00515 TPR_1: Tetratricopept 98.8 1E-08 2.2E-13 41.5 3.5 31 30-60 3-33 (34)
174 PF07719 TPR_2: Tetratricopept 98.8 1.8E-08 3.9E-13 40.7 4.1 32 29-60 2-33 (34)
175 PF05843 Suf: Suppressor of fo 98.8 1.9E-07 4.2E-12 55.5 9.8 108 6-114 13-124 (280)
176 COG3071 HemY Uncharacterized e 98.8 2.5E-07 5.4E-12 56.3 10.1 106 5-115 274-379 (400)
177 PF14938 SNAP: Soluble NSF att 98.8 9.8E-08 2.1E-12 56.8 8.3 107 7-114 87-213 (282)
178 PLN03218 maturation of RBCL 1; 98.8 4.4E-07 9.4E-12 62.3 12.1 15 100-114 722-736 (1060)
179 KOG1915|consensus 98.8 4.2E-07 9.1E-12 57.0 10.7 105 5-111 84-188 (677)
180 KOG3081|consensus 98.8 6.3E-07 1.4E-11 52.2 10.7 105 6-113 149-257 (299)
181 PF00515 TPR_1: Tetratricopept 98.8 4.7E-08 1E-12 39.5 4.6 34 62-96 1-34 (34)
182 KOG2376|consensus 98.8 2.2E-07 4.7E-12 59.2 9.4 108 4-116 22-129 (652)
183 COG4105 ComL DNA uptake lipopr 98.7 1.8E-06 3.9E-11 50.1 12.2 92 5-96 45-149 (254)
184 COG3071 HemY Uncharacterized e 98.7 1.5E-06 3.3E-11 53.0 12.2 110 5-115 95-205 (400)
185 COG4785 NlpI Lipoprotein NlpI, 98.7 4.3E-08 9.2E-13 55.6 5.3 86 28-114 65-150 (297)
186 PLN03218 maturation of RBCL 1; 98.7 9.4E-07 2E-11 60.8 12.3 38 76-113 592-630 (1060)
187 PF07719 TPR_2: Tetratricopept 98.7 1.2E-07 2.6E-12 38.2 4.7 34 62-96 1-34 (34)
188 PLN03081 pentatricopeptide (PP 98.7 4.4E-07 9.6E-12 60.1 9.5 106 4-113 269-376 (697)
189 KOG3785|consensus 98.7 3.4E-07 7.4E-12 55.6 7.8 108 4-112 67-200 (557)
190 KOG2610|consensus 98.6 1.2E-06 2.6E-11 52.9 9.9 110 5-115 114-227 (491)
191 COG4700 Uncharacterized protei 98.6 3.6E-06 7.8E-11 47.0 10.8 106 9-116 71-179 (251)
192 KOG0551|consensus 98.6 5.7E-07 1.2E-11 53.9 8.1 86 6-92 93-182 (390)
193 KOG1070|consensus 98.6 8.2E-07 1.8E-11 61.5 9.7 111 3-114 1539-1651(1710)
194 PF10300 DUF3808: Protein of u 98.6 2.4E-06 5.2E-11 54.3 11.3 106 7-113 246-356 (468)
195 PF14938 SNAP: Soluble NSF att 98.6 1.1E-06 2.4E-11 52.3 9.3 92 4-96 124-229 (282)
196 KOG2053|consensus 98.6 3.5E-06 7.5E-11 56.1 11.9 107 5-113 20-126 (932)
197 KOG1308|consensus 98.6 1.6E-08 3.5E-13 60.4 1.4 91 4-95 124-214 (377)
198 KOG0551|consensus 98.6 9.2E-07 2E-11 53.0 8.1 87 28-115 81-171 (390)
199 PLN03077 Protein ECB2; Provisi 98.6 1.2E-06 2.5E-11 59.4 9.3 107 4-116 534-644 (857)
200 KOG2396|consensus 98.5 8.6E-06 1.9E-10 51.4 12.0 95 11-105 88-182 (568)
201 PF06552 TOM20_plant: Plant sp 98.5 1E-06 2.2E-11 48.5 7.2 64 8-71 49-123 (186)
202 KOG2471|consensus 98.5 2.9E-07 6.3E-12 57.8 5.3 103 6-109 252-381 (696)
203 KOG3081|consensus 98.5 8.3E-06 1.8E-10 47.7 10.4 91 7-98 186-277 (299)
204 PF05843 Suf: Suppressor of fo 98.5 2.7E-06 5.8E-11 50.7 8.5 87 29-115 2-88 (280)
205 COG0457 NrfG FOG: TPR repeat [ 98.5 1.2E-05 2.6E-10 45.3 10.9 102 6-108 142-247 (291)
206 KOG3785|consensus 98.5 3E-06 6.4E-11 51.7 8.5 83 6-89 34-117 (557)
207 KOG1915|consensus 98.5 1.1E-05 2.4E-10 50.9 11.0 109 6-116 378-490 (677)
208 KOG2796|consensus 98.5 3.5E-06 7.7E-11 49.4 8.3 91 5-96 223-319 (366)
209 PF03704 BTAD: Bacterial trans 98.5 1.5E-05 3.3E-10 42.9 10.4 85 7-92 19-125 (146)
210 KOG2376|consensus 98.5 6.5E-06 1.4E-10 52.8 9.9 109 4-116 89-243 (652)
211 PF13181 TPR_8: Tetratricopept 98.5 4.1E-07 8.9E-12 36.6 3.3 30 30-59 3-32 (34)
212 KOG4507|consensus 98.4 4.9E-06 1.1E-10 53.6 9.2 103 5-108 618-721 (886)
213 COG3118 Thioredoxin domain-con 98.4 6.1E-06 1.3E-10 48.9 8.3 106 5-111 145-286 (304)
214 PF04184 ST7: ST7 protein; In 98.4 2.9E-06 6.3E-11 53.4 7.4 107 6-115 180-313 (539)
215 KOG2796|consensus 98.4 5.1E-06 1.1E-10 48.7 7.8 110 5-115 188-304 (366)
216 COG0457 NrfG FOG: TPR repeat [ 98.4 4.2E-05 9.2E-10 43.0 11.4 104 7-111 108-216 (291)
217 COG4105 ComL DNA uptake lipopr 98.4 3.5E-05 7.6E-10 44.9 10.7 80 27-107 33-118 (254)
218 PRK10941 hypothetical protein; 98.4 2.9E-05 6.4E-10 46.0 10.6 77 30-107 183-259 (269)
219 KOG1130|consensus 98.4 1.4E-06 3.1E-11 53.9 5.2 112 4-116 205-334 (639)
220 PRK04841 transcriptional regul 98.3 2.1E-05 4.5E-10 53.7 10.7 111 5-116 463-592 (903)
221 KOG1130|consensus 98.3 3.8E-07 8.3E-12 56.3 2.3 106 9-115 170-293 (639)
222 PF13174 TPR_6: Tetratricopept 98.3 1.8E-06 4E-11 34.3 3.6 30 31-60 3-32 (33)
223 KOG1941|consensus 98.3 5.8E-06 1.3E-10 50.5 7.0 111 4-115 132-264 (518)
224 KOG0376|consensus 98.3 3.2E-07 6.9E-12 57.1 1.4 83 32-115 8-90 (476)
225 PF09613 HrpB1_HrpK: Bacterial 98.3 8.9E-05 1.9E-09 40.4 10.4 74 6-80 22-95 (160)
226 PF13181 TPR_8: Tetratricopept 98.3 3.2E-06 6.9E-11 33.9 3.9 32 63-95 2-33 (34)
227 PF13174 TPR_6: Tetratricopept 98.2 5.9E-06 1.3E-10 32.8 3.7 33 63-96 1-33 (33)
228 KOG1308|consensus 98.2 3.3E-07 7.1E-12 55.0 -0.2 81 35-116 121-201 (377)
229 PF13176 TPR_7: Tetratricopept 98.2 4.2E-06 9.1E-11 34.2 3.1 25 31-55 2-26 (36)
230 PF03704 BTAD: Bacterial trans 98.2 0.00017 3.8E-09 38.8 10.2 81 35-116 13-115 (146)
231 PF13281 DUF4071: Domain of un 98.1 0.00016 3.5E-09 44.7 10.6 109 2-111 149-273 (374)
232 PRK04841 transcriptional regul 98.1 0.00016 3.5E-09 49.5 11.5 110 6-116 421-550 (903)
233 KOG3824|consensus 98.1 3.2E-05 6.8E-10 46.6 7.1 71 34-105 122-192 (472)
234 KOG1585|consensus 98.1 9E-05 1.9E-09 43.2 8.7 112 3-116 40-169 (308)
235 KOG3824|consensus 98.1 1.3E-05 2.8E-10 48.1 5.4 67 5-71 127-193 (472)
236 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 8.1E-05 1.7E-09 33.1 6.5 35 65-100 4-38 (53)
237 PF14561 TPR_20: Tetratricopep 98.1 0.00019 4E-09 35.6 9.2 49 13-61 7-55 (90)
238 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 4.6E-05 9.9E-10 33.9 5.6 43 29-71 2-44 (53)
239 KOG1070|consensus 98.1 0.00021 4.5E-09 50.5 11.0 86 29-115 1531-1618(1710)
240 smart00028 TPR Tetratricopepti 98.0 1.6E-05 3.6E-10 30.7 3.8 31 30-60 3-33 (34)
241 COG2976 Uncharacterized protei 98.0 0.00026 5.7E-09 39.8 9.1 90 5-96 100-192 (207)
242 COG5191 Uncharacterized conser 98.0 2.8E-05 6.1E-10 46.7 5.6 89 17-105 96-184 (435)
243 KOG0545|consensus 98.0 7.9E-05 1.7E-09 43.5 7.1 81 29-110 179-277 (329)
244 KOG2053|consensus 98.0 0.00018 3.8E-09 48.5 9.4 102 4-107 53-155 (932)
245 PF14561 TPR_20: Tetratricopep 97.9 0.00029 6.2E-09 35.0 7.7 65 47-112 7-73 (90)
246 PRK10941 hypothetical protein; 97.9 0.00012 2.7E-09 43.4 7.3 69 3-71 190-258 (269)
247 COG4976 Predicted methyltransf 97.9 2.9E-05 6.3E-10 44.7 4.4 58 4-61 5-62 (287)
248 PF04184 ST7: ST7 protein; In 97.9 0.00043 9.3E-09 44.2 9.6 96 3-98 268-381 (539)
249 PF09613 HrpB1_HrpK: Bacterial 97.9 0.00081 1.8E-08 36.8 12.8 84 30-114 12-95 (160)
250 PF04781 DUF627: Protein of un 97.9 0.00035 7.7E-09 35.7 7.5 88 4-92 6-107 (111)
251 COG4976 Predicted methyltransf 97.9 5.2E-05 1.1E-09 43.7 5.0 59 37-96 4-62 (287)
252 PF13176 TPR_7: Tetratricopept 97.9 6E-05 1.3E-09 30.7 3.8 28 64-92 1-28 (36)
253 KOG4340|consensus 97.8 0.00019 4E-09 43.3 7.1 106 6-113 22-128 (459)
254 smart00028 TPR Tetratricopepti 97.8 6.7E-05 1.4E-09 28.9 3.8 32 63-95 2-33 (34)
255 TIGR02561 HrpB1_HrpK type III 97.8 0.0011 2.3E-08 35.9 9.1 73 7-80 23-95 (153)
256 TIGR02561 HrpB1_HrpK type III 97.8 0.00063 1.4E-08 36.7 8.0 80 34-114 16-95 (153)
257 PF09986 DUF2225: Uncharacteri 97.8 0.0016 3.5E-08 37.5 11.3 99 6-105 89-208 (214)
258 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0025 5.4E-08 39.0 11.5 90 15-105 6-107 (321)
259 PF10300 DUF3808: Protein of u 97.7 0.0005 1.1E-08 44.1 8.1 87 5-92 278-376 (468)
260 PF13281 DUF4071: Domain of un 97.7 0.0039 8.4E-08 38.9 12.4 55 6-60 194-258 (374)
261 KOG3364|consensus 97.7 0.002 4.2E-08 34.3 10.8 79 28-107 32-115 (149)
262 KOG1310|consensus 97.6 0.0012 2.5E-08 42.8 8.5 88 8-96 388-478 (758)
263 KOG1586|consensus 97.6 0.0013 2.8E-08 38.3 7.9 56 40-95 85-146 (288)
264 KOG1586|consensus 97.6 0.0021 4.5E-08 37.5 8.7 90 6-96 85-187 (288)
265 KOG3364|consensus 97.5 0.00059 1.3E-08 36.2 5.5 66 5-70 46-113 (149)
266 KOG1258|consensus 97.5 0.0086 1.9E-07 39.2 11.1 109 5-114 308-417 (577)
267 KOG2396|consensus 97.5 0.00085 1.8E-08 42.9 6.5 62 9-70 120-182 (568)
268 KOG4814|consensus 97.5 0.0019 4.1E-08 42.7 8.0 64 34-98 360-429 (872)
269 KOG2047|consensus 97.4 0.0057 1.2E-07 40.7 10.0 51 5-55 398-452 (835)
270 KOG4814|consensus 97.4 0.004 8.7E-08 41.3 9.3 87 5-92 365-457 (872)
271 COG2912 Uncharacterized conser 97.4 0.0044 9.6E-08 36.8 8.6 74 31-105 184-257 (269)
272 PF04781 DUF627: Protein of un 97.4 0.0025 5.4E-08 32.7 6.7 74 34-107 2-88 (111)
273 PF10373 EST1_DNA_bind: Est1 D 97.4 0.0029 6.2E-08 37.6 7.8 61 13-73 1-61 (278)
274 COG2976 Uncharacterized protei 97.4 0.0078 1.7E-07 34.2 9.7 84 30-116 91-178 (207)
275 PF13374 TPR_10: Tetratricopep 97.4 0.00054 1.2E-08 28.4 3.5 27 30-56 4-30 (42)
276 PF10373 EST1_DNA_bind: Est1 D 97.3 0.003 6.5E-08 37.6 7.7 62 47-109 1-62 (278)
277 KOG2610|consensus 97.3 0.0046 1E-07 38.1 8.0 83 5-88 148-234 (491)
278 KOG1550|consensus 97.3 0.011 2.3E-07 39.0 10.2 100 6-109 261-372 (552)
279 KOG1914|consensus 97.3 0.0055 1.2E-07 39.9 8.4 73 18-92 10-82 (656)
280 PF10602 RPN7: 26S proteasome 97.3 0.01 2.2E-07 33.3 9.1 64 28-92 36-102 (177)
281 KOG1941|consensus 97.3 0.0035 7.6E-08 39.0 7.2 87 29-116 84-181 (518)
282 COG3914 Spy Predicted O-linked 97.3 0.023 5E-07 37.4 10.9 100 6-106 79-185 (620)
283 PF12968 DUF3856: Domain of Un 97.2 0.0077 1.7E-07 31.5 7.6 86 6-92 21-129 (144)
284 PF13374 TPR_10: Tetratricopep 97.1 0.0025 5.4E-08 26.3 4.4 30 62-92 2-31 (42)
285 PF12862 Apc5: Anaphase-promot 97.1 0.0092 2E-07 29.8 7.8 54 39-93 9-71 (94)
286 PF11207 DUF2989: Protein of u 97.1 0.018 3.8E-07 32.9 10.5 70 45-116 123-197 (203)
287 PF07720 TPR_3: Tetratricopept 97.1 0.0028 6E-08 25.8 4.0 30 30-59 3-34 (36)
288 KOG0530|consensus 97.1 0.023 5.1E-07 33.9 9.6 105 9-114 58-164 (318)
289 COG3898 Uncharacterized membra 97.1 0.032 6.8E-07 35.3 10.4 48 6-53 166-213 (531)
290 PF02259 FAT: FAT domain; Int 97.1 0.028 6E-07 34.6 10.5 106 4-110 156-305 (352)
291 KOG2471|consensus 97.0 0.0053 1.1E-07 39.6 6.6 72 3-74 292-381 (696)
292 KOG3617|consensus 97.0 0.0095 2.1E-07 41.0 7.7 87 29-116 859-986 (1416)
293 KOG1310|consensus 97.0 0.0059 1.3E-07 39.8 6.5 86 31-116 377-464 (758)
294 PF12862 Apc5: Anaphase-promot 97.0 0.0029 6.4E-08 31.6 4.3 55 5-59 9-72 (94)
295 COG0790 FOG: TPR repeat, SEL1 96.9 0.033 7.2E-07 33.5 12.2 99 8-111 127-236 (292)
296 COG5191 Uncharacterized conser 96.9 0.0028 6.1E-08 38.6 4.5 63 7-69 120-183 (435)
297 PF10602 RPN7: 26S proteasome 96.9 0.026 5.7E-07 31.7 8.5 90 4-94 46-144 (177)
298 PF08631 SPO22: Meiosis protei 96.9 0.038 8.2E-07 33.3 10.8 96 4-100 3-124 (278)
299 KOG0529|consensus 96.9 0.048 1E-06 34.5 11.0 100 9-108 90-194 (421)
300 PF07079 DUF1347: Protein of u 96.8 0.057 1.2E-06 34.8 9.9 111 5-116 17-147 (549)
301 PF04910 Tcf25: Transcriptiona 96.8 0.052 1.1E-06 34.0 11.3 91 8-99 8-140 (360)
302 PF07721 TPR_4: Tetratricopept 96.8 0.003 6.5E-08 23.6 2.9 21 31-51 4-24 (26)
303 PF10516 SHNi-TPR: SHNi-TPR; 96.8 0.0034 7.4E-08 25.9 3.1 27 30-56 3-29 (38)
304 COG3629 DnrI DNA-binding trans 96.8 0.048 1E-06 32.9 9.8 63 29-92 154-216 (280)
305 KOG1585|consensus 96.8 0.033 7.2E-07 33.0 7.9 52 6-57 83-139 (308)
306 COG2912 Uncharacterized conser 96.7 0.0087 1.9E-07 35.6 5.5 68 4-71 191-258 (269)
307 PF07721 TPR_4: Tetratricopept 96.7 0.0045 9.9E-08 23.1 3.0 24 63-87 2-25 (26)
308 KOG4507|consensus 96.7 0.0063 1.4E-07 40.2 5.2 89 7-96 226-316 (886)
309 PF09986 DUF2225: Uncharacteri 96.7 0.046 1E-06 31.7 8.4 61 10-70 141-208 (214)
310 smart00386 HAT HAT (Half-A-TPR 96.7 0.0086 1.9E-07 23.1 4.1 28 9-36 2-29 (33)
311 PF15015 NYD-SP12_N: Spermatog 96.7 0.026 5.6E-07 36.0 7.5 84 5-89 187-288 (569)
312 PF15015 NYD-SP12_N: Spermatog 96.6 0.021 4.5E-07 36.4 6.9 81 35-116 183-281 (569)
313 PRK15180 Vi polysaccharide bio 96.6 0.02 4.2E-07 37.2 6.7 86 6-92 301-386 (831)
314 KOG1550|consensus 96.6 0.12 2.5E-06 34.4 11.7 81 9-93 308-394 (552)
315 PF10516 SHNi-TPR: SHNi-TPR; 96.5 0.0093 2E-07 24.6 3.4 29 63-92 2-30 (38)
316 KOG1258|consensus 96.5 0.13 2.9E-06 34.0 12.5 106 6-111 378-489 (577)
317 PF08424 NRDE-2: NRDE-2, neces 96.5 0.095 2.1E-06 32.3 11.0 83 10-92 47-131 (321)
318 KOG2300|consensus 96.4 0.14 3E-06 33.5 9.9 110 5-115 334-463 (629)
319 PF07079 DUF1347: Protein of u 96.4 0.052 1.1E-06 34.9 7.5 72 35-109 469-542 (549)
320 smart00386 HAT HAT (Half-A-TPR 96.3 0.016 3.5E-07 22.2 4.1 26 79-104 3-28 (33)
321 KOG2047|consensus 96.3 0.2 4.3E-06 34.0 11.1 87 8-95 491-582 (835)
322 COG3914 Spy Predicted O-linked 96.2 0.14 3E-06 34.0 9.0 90 13-103 50-142 (620)
323 KOG2300|consensus 96.2 0.17 3.8E-06 33.0 11.7 109 6-115 379-503 (629)
324 COG0790 FOG: TPR repeat, SEL1 96.2 0.13 2.9E-06 31.0 11.3 96 8-109 91-199 (292)
325 PRK13184 pknD serine/threonine 96.1 0.21 4.6E-06 35.3 9.7 91 6-98 487-587 (932)
326 PF07720 TPR_3: Tetratricopept 96.0 0.032 6.9E-07 22.7 4.7 32 63-95 2-35 (36)
327 COG3898 Uncharacterized membra 95.9 0.25 5.4E-06 31.6 10.5 39 76-114 167-205 (531)
328 PF12968 DUF3856: Domain of Un 95.8 0.1 2.3E-06 27.5 5.8 86 30-116 9-119 (144)
329 PF04910 Tcf25: Transcriptiona 95.8 0.11 2.4E-06 32.6 7.0 93 4-97 113-227 (360)
330 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.084 1.8E-06 25.5 5.5 57 33-90 11-70 (80)
331 PF11817 Foie-gras_1: Foie gra 95.7 0.2 4.3E-06 29.7 8.7 77 12-89 156-244 (247)
332 PF08631 SPO22: Meiosis protei 95.7 0.19 4E-06 30.4 7.7 74 39-113 4-100 (278)
333 PF10255 Paf67: RNA polymerase 95.6 0.062 1.3E-06 34.1 5.4 60 31-91 125-192 (404)
334 KOG0530|consensus 95.5 0.27 5.9E-06 29.7 9.1 82 8-90 92-174 (318)
335 PHA02537 M terminase endonucle 95.5 0.18 3.9E-06 29.7 6.7 97 1-97 90-212 (230)
336 KOG0546|consensus 95.4 0.032 7E-07 34.5 3.8 102 5-107 233-353 (372)
337 PF11846 DUF3366: Domain of un 95.4 0.18 3.9E-06 28.6 6.5 51 44-96 127-177 (193)
338 PF12854 PPR_1: PPR repeat 95.3 0.065 1.4E-06 21.3 3.7 26 28-53 7-32 (34)
339 COG3118 Thioredoxin domain-con 95.2 0.37 8E-06 29.5 9.5 44 16-59 224-267 (304)
340 PF11207 DUF2989: Protein of u 95.2 0.3 6.5E-06 28.1 8.4 71 11-83 123-198 (203)
341 KOG1914|consensus 95.1 0.59 1.3E-05 31.2 8.6 91 3-94 410-503 (656)
342 COG4455 ImpE Protein of avirul 95.1 0.35 7.7E-06 28.5 7.7 56 6-61 13-68 (273)
343 PF13226 DUF4034: Domain of un 95.1 0.41 8.9E-06 29.0 9.1 108 6-113 12-149 (277)
344 COG3629 DnrI DNA-binding trans 95.0 0.17 3.7E-06 30.6 5.9 51 6-56 165-215 (280)
345 KOG0529|consensus 94.8 0.61 1.3E-05 29.9 10.6 100 11-111 46-159 (421)
346 TIGR03504 FimV_Cterm FimV C-te 94.8 0.1 2.2E-06 22.2 3.4 23 33-55 4-26 (44)
347 COG3947 Response regulator con 94.7 0.5 1.1E-05 29.0 7.1 57 32-89 283-339 (361)
348 PF14863 Alkyl_sulf_dimr: Alky 94.6 0.35 7.5E-06 26.3 6.6 48 64-112 72-119 (141)
349 COG4649 Uncharacterized protei 94.4 0.48 1E-05 26.9 10.8 43 63-107 168-210 (221)
350 COG5107 RNA14 Pre-mRNA 3'-end 94.4 0.74 1.6E-05 30.2 7.7 77 16-93 30-106 (660)
351 COG4649 Uncharacterized protei 94.3 0.51 1.1E-05 26.8 10.3 108 8-116 72-186 (221)
352 PF01535 PPR: PPR repeat; Int 94.3 0.12 2.6E-06 19.4 2.9 25 31-55 3-27 (31)
353 TIGR03504 FimV_Cterm FimV C-te 94.2 0.19 4E-06 21.4 4.0 26 66-92 3-28 (44)
354 KOG2041|consensus 94.1 0.41 8.9E-06 33.0 6.5 60 28-88 796-877 (1189)
355 PF11817 Foie-gras_1: Foie gra 94.0 0.71 1.5E-05 27.5 6.9 71 43-114 153-235 (247)
356 PRK15180 Vi polysaccharide bio 93.9 0.11 2.3E-06 34.1 3.5 92 4-96 333-424 (831)
357 PF04053 Coatomer_WDAD: Coatom 93.8 1.2 2.6E-05 29.1 8.2 30 26-55 345-374 (443)
358 KOG1839|consensus 93.7 0.6 1.3E-05 34.0 6.9 97 16-113 960-1073(1236)
359 COG2909 MalT ATP-dependent tra 93.6 1.8 4E-05 30.6 9.8 105 6-111 427-551 (894)
360 PF10255 Paf67: RNA polymerase 93.6 0.18 3.8E-06 32.2 4.0 51 5-56 133-192 (404)
361 COG3947 Response regulator con 93.5 0.24 5.1E-06 30.4 4.3 51 4-54 289-339 (361)
362 KOG3617|consensus 93.5 1 2.3E-05 31.9 7.5 85 6-91 870-995 (1416)
363 KOG1839|consensus 93.3 0.36 7.8E-06 35.0 5.4 111 3-114 982-1116(1236)
364 KOG3807|consensus 93.2 1.3 2.9E-05 27.9 8.5 83 9-94 199-306 (556)
365 KOG2422|consensus 93.1 1.8 3.9E-05 29.2 11.6 101 5-106 249-386 (665)
366 KOG0985|consensus 92.9 2.8 6.1E-05 30.7 10.1 62 26-93 1102-1163(1666)
367 PF09797 NatB_MDM20: N-acetylt 92.9 1.5 3.2E-05 27.7 7.3 49 6-54 195-243 (365)
368 PF10579 Rapsyn_N: Rapsyn N-te 92.5 0.65 1.4E-05 22.6 6.4 48 6-53 18-68 (80)
369 PF11846 DUF3366: Domain of un 92.4 1.2 2.6E-05 25.3 6.2 51 8-59 125-175 (193)
370 KOG3783|consensus 92.3 2.3 5E-05 28.4 8.6 93 11-104 250-344 (546)
371 PF14863 Alkyl_sulf_dimr: Alky 92.0 1.2 2.5E-05 24.3 5.3 47 28-74 70-116 (141)
372 TIGR00756 PPR pentatricopeptid 91.7 0.39 8.5E-06 18.3 3.4 23 33-55 5-27 (35)
373 KOG2908|consensus 91.5 2.4 5.2E-05 26.8 6.8 89 5-93 86-187 (380)
374 PF13041 PPR_2: PPR repeat fam 91.4 0.62 1.3E-05 20.0 4.9 27 30-56 5-31 (50)
375 COG2909 MalT ATP-dependent tra 91.4 3.9 8.5E-05 29.1 9.9 88 28-116 415-516 (894)
376 PF04053 Coatomer_WDAD: Coatom 91.4 2.8 6.1E-05 27.4 10.4 32 59-91 344-375 (443)
377 KOG0546|consensus 91.3 0.54 1.2E-05 29.5 4.0 65 7-71 288-352 (372)
378 KOG4151|consensus 91.1 2.1 4.6E-05 29.7 6.8 95 6-101 65-165 (748)
379 PF02259 FAT: FAT domain; Int 90.9 2.5 5.5E-05 26.1 11.3 66 25-91 143-212 (352)
380 cd02682 MIT_AAA_Arch MIT: doma 90.6 0.8 1.7E-05 22.0 3.4 33 31-63 9-48 (75)
381 KOG1464|consensus 90.3 2 4.4E-05 26.4 5.6 49 8-56 41-93 (440)
382 PF10345 Cohesin_load: Cohesin 90.1 4.4 9.6E-05 27.6 10.7 87 5-93 71-169 (608)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 89.9 1.8 4E-05 22.9 6.1 72 12-90 44-126 (126)
384 COG4455 ImpE Protein of avirul 89.9 2.8 6E-05 25.0 11.3 70 37-107 10-82 (273)
385 KOG0985|consensus 89.8 5.7 0.00012 29.3 8.0 49 60-114 1102-1150(1666)
386 KOG2114|consensus 89.5 4 8.7E-05 29.0 7.0 30 28-57 368-397 (933)
387 KOG0276|consensus 89.4 3.1 6.8E-05 28.5 6.3 64 26-89 664-747 (794)
388 KOG3783|consensus 89.3 4.9 0.00011 27.0 9.3 66 30-96 451-524 (546)
389 PF13812 PPR_3: Pentatricopept 89.3 0.75 1.6E-05 17.5 3.5 26 31-56 4-29 (34)
390 PF09205 DUF1955: Domain of un 89.2 2.4 5.1E-05 23.1 5.7 56 37-93 95-150 (161)
391 PF04190 DUF410: Protein of un 89.1 3.5 7.5E-05 24.9 9.1 67 26-92 88-170 (260)
392 smart00671 SEL1 Sel1-like repe 88.9 0.85 1.8E-05 17.7 3.8 14 78-91 20-33 (36)
393 KOG3807|consensus 88.3 4.9 0.00011 25.6 6.9 78 36-116 192-294 (556)
394 KOG0276|consensus 88.3 6.5 0.00014 27.1 8.1 93 10-112 623-723 (794)
395 KOG2581|consensus 88.2 1.4 3E-05 28.5 4.1 55 7-61 222-280 (493)
396 PRK15490 Vi polysaccharide bio 88.1 6.5 0.00014 26.8 9.7 59 26-87 40-98 (578)
397 PF02184 HAT: HAT (Half-A-TPR) 88.0 1.1 2.3E-05 17.7 3.6 26 9-35 2-27 (32)
398 PF02064 MAS20: MAS20 protein 87.9 2.4 5.2E-05 22.5 4.3 27 34-60 69-95 (121)
399 KOG0890|consensus 87.8 13 0.00028 29.9 9.7 63 27-92 1669-1731(2382)
400 PF13226 DUF4034: Domain of un 87.6 4.8 0.0001 24.7 7.9 68 12-80 61-150 (277)
401 PRK13184 pknD serine/threonine 87.3 9.3 0.0002 27.8 9.6 54 9-63 534-587 (932)
402 COG5536 BET4 Protein prenyltra 87.2 4.5 9.7E-05 25.0 5.6 93 10-103 90-190 (328)
403 COG5107 RNA14 Pre-mRNA 3'-end 87.2 6.8 0.00015 26.1 9.2 53 4-56 442-494 (660)
404 KOG0890|consensus 87.0 5.8 0.00013 31.5 7.0 81 5-85 1460-1540(2382)
405 PF04212 MIT: MIT (microtubule 87.0 2.1 4.5E-05 19.9 3.6 23 33-55 10-32 (69)
406 PF00244 14-3-3: 14-3-3 protei 86.7 2.4 5.1E-05 25.2 4.4 49 44-92 142-198 (236)
407 PF10345 Cohesin_load: Cohesin 86.0 8.9 0.00019 26.3 11.8 83 11-95 38-131 (608)
408 cd02677 MIT_SNX15 MIT: domain 85.8 1.8 3.8E-05 20.8 2.9 16 41-56 19-34 (75)
409 COG4941 Predicted RNA polymera 85.3 7.5 0.00016 24.8 9.5 95 9-105 311-407 (415)
410 PF07219 HemY_N: HemY protein 85.0 3.7 8.1E-05 21.1 6.9 47 65-112 62-108 (108)
411 KOG3616|consensus 85.0 12 0.00026 26.8 8.3 75 30-115 767-842 (1636)
412 cd00280 TRFH Telomeric Repeat 84.5 2.7 5.8E-05 24.2 3.6 38 33-71 116-153 (200)
413 PF08238 Sel1: Sel1 repeat; I 84.3 1.9 4.1E-05 17.1 3.7 12 79-90 24-35 (39)
414 smart00101 14_3_3 14-3-3 homol 83.9 7.2 0.00016 23.5 9.6 49 44-92 144-200 (244)
415 KOG2422|consensus 83.7 12 0.00025 25.7 8.5 90 5-95 353-451 (665)
416 PF12753 Nro1: Nuclear pore co 82.7 6.2 0.00013 25.5 5.0 14 79-92 378-391 (404)
417 PF09205 DUF1955: Domain of un 82.5 6.1 0.00013 21.6 7.2 104 7-115 15-138 (161)
418 cd02681 MIT_calpain7_1 MIT: do 82.3 4.2 9.1E-05 19.6 3.5 24 33-56 11-34 (76)
419 cd02683 MIT_1 MIT: domain cont 81.9 4 8.6E-05 19.7 3.3 20 36-55 14-33 (77)
420 KOG2041|consensus 81.7 14 0.0003 26.3 6.6 73 8-89 748-822 (1189)
421 PF09797 NatB_MDM20: N-acetylt 81.6 9.5 0.00021 24.2 5.7 48 41-89 196-243 (365)
422 PF02064 MAS20: MAS20 protein 81.4 6.3 0.00014 21.0 5.4 35 66-101 67-101 (121)
423 KOG4279|consensus 81.1 18 0.00039 26.0 7.7 100 4-106 297-409 (1226)
424 cd00280 TRFH Telomeric Repeat 81.0 8.5 0.00018 22.3 8.7 33 73-107 122-154 (200)
425 KOG0686|consensus 80.9 13 0.00028 24.4 6.9 63 29-92 151-216 (466)
426 PRK15490 Vi polysaccharide bio 80.8 16 0.00034 25.2 7.6 70 38-110 18-87 (578)
427 KOG4279|consensus 80.7 3.8 8.1E-05 29.0 3.8 57 5-61 254-320 (1226)
428 PF05053 Menin: Menin; InterP 80.7 16 0.00034 25.1 9.3 78 28-106 277-367 (618)
429 TIGR02996 rpt_mate_G_obs repea 80.6 3.4 7.4E-05 17.4 3.8 32 16-47 4-35 (42)
430 KOG1464|consensus 80.5 11 0.00024 23.4 6.0 52 40-92 39-94 (440)
431 smart00299 CLH Clathrin heavy 79.9 7.2 0.00016 20.7 9.4 101 7-109 20-137 (140)
432 COG4259 Uncharacterized protei 79.6 6.7 0.00015 20.2 6.5 52 49-101 58-110 (121)
433 KOG0686|consensus 79.5 15 0.00032 24.1 6.3 86 4-90 160-256 (466)
434 COG2015 Alkyl sulfatase and re 79.4 17 0.00036 24.6 8.0 47 66-113 456-502 (655)
435 COG5187 RPN7 26S proteasome re 78.8 14 0.00029 23.3 8.4 31 28-58 115-145 (412)
436 PF12583 TPPII_N: Tripeptidyl 78.6 8.5 0.00018 20.8 4.0 24 47-70 95-118 (139)
437 KOG0687|consensus 78.4 15 0.00032 23.5 8.9 30 28-57 104-133 (393)
438 cd02680 MIT_calpain7_2 MIT: do 78.1 2.1 4.6E-05 20.6 1.6 15 11-25 4-18 (75)
439 PF07219 HemY_N: HemY protein 78.0 7.6 0.00016 20.0 6.4 47 30-77 61-107 (108)
440 KOG2581|consensus 77.8 17 0.00037 23.9 9.2 66 30-96 211-280 (493)
441 PF15297 CKAP2_C: Cytoskeleton 77.8 16 0.00034 23.4 6.0 32 29-60 141-172 (353)
442 PF09477 Type_III_YscG: Bacter 77.2 8.6 0.00019 20.1 9.7 75 9-89 21-95 (116)
443 cd02682 MIT_AAA_Arch MIT: doma 77.2 6.7 0.00015 18.9 5.8 24 76-99 19-49 (75)
444 COG5536 BET4 Protein prenyltra 75.7 11 0.00025 23.4 4.5 96 10-106 126-236 (328)
445 PF12753 Nro1: Nuclear pore co 75.3 6.4 0.00014 25.5 3.5 34 79-114 334-367 (404)
446 KOG2758|consensus 74.7 19 0.00042 23.0 7.7 75 16-92 117-196 (432)
447 cd02679 MIT_spastin MIT: domai 74.2 8.7 0.00019 18.7 3.2 16 9-24 4-19 (79)
448 PF04348 LppC: LppC putative l 74.0 1 2.2E-05 30.1 0.0 58 30-88 26-86 (536)
449 KOG3677|consensus 73.8 4.9 0.00011 26.3 2.8 56 31-91 238-300 (525)
450 PF05053 Menin: Menin; InterP 73.3 14 0.0003 25.3 4.7 45 12-56 297-346 (618)
451 smart00745 MIT Microtubule Int 72.5 9 0.00019 18.1 3.3 16 40-55 20-35 (77)
452 COG5159 RPN6 26S proteasome re 72.4 21 0.00046 22.4 7.5 42 6-47 15-64 (421)
453 KOG4014|consensus 72.2 17 0.00037 21.2 8.1 96 8-108 49-155 (248)
454 TIGR00985 3a0801s04tom mitocho 71.4 15 0.00033 20.3 4.2 30 33-62 95-125 (148)
455 PF01239 PPTA: Protein prenylt 71.3 5.4 0.00012 15.1 4.1 23 49-71 4-26 (31)
456 smart00299 CLH Clathrin heavy 71.3 14 0.00029 19.7 6.0 48 38-87 17-64 (140)
457 PF06957 COPI_C: Coatomer (COP 70.9 27 0.00059 23.0 6.8 95 5-99 215-336 (422)
458 PF09670 Cas_Cas02710: CRISPR- 70.4 26 0.00057 22.6 9.4 52 5-56 142-197 (379)
459 KOG3677|consensus 69.3 17 0.00037 24.0 4.4 66 30-95 274-339 (525)
460 KOG4563|consensus 68.9 16 0.00035 23.5 4.2 53 30-83 43-103 (400)
461 cd02678 MIT_VPS4 MIT: domain c 68.1 12 0.00026 17.8 3.6 19 37-55 15-33 (75)
462 PF04090 RNA_pol_I_TF: RNA pol 67.5 23 0.00049 20.8 8.5 51 5-55 52-103 (199)
463 PF08771 Rapamycin_bind: Rapam 66.2 16 0.00035 18.6 4.9 77 34-111 20-98 (100)
464 cd02656 MIT MIT: domain contai 66.1 13 0.00028 17.5 3.3 17 39-55 17-33 (75)
465 PF09670 Cas_Cas02710: CRISPR- 65.6 34 0.00074 22.1 8.3 62 31-92 134-198 (379)
466 KOG2034|consensus 65.4 7.5 0.00016 27.9 2.5 48 3-54 367-415 (911)
467 KOG3616|consensus 64.5 42 0.00092 24.4 5.7 36 26-61 993-1028(1636)
468 PF07163 Pex26: Pex26 protein; 64.2 33 0.00071 21.5 10.5 84 8-91 49-146 (309)
469 COG4941 Predicted RNA polymera 64.1 37 0.00079 22.0 6.4 42 28-69 365-406 (415)
470 COG4259 Uncharacterized protei 64.0 19 0.00041 18.7 6.3 51 14-64 57-108 (121)
471 PRK11619 lytic murein transgly 63.9 48 0.001 23.3 8.6 53 37-90 321-373 (644)
472 KOG4056|consensus 63.1 23 0.00051 19.4 5.0 35 66-101 85-119 (143)
473 PF14689 SPOB_a: Sensor_kinase 62.7 14 0.00031 16.8 4.4 17 38-54 33-49 (62)
474 KOG4563|consensus 62.6 28 0.00061 22.5 4.4 49 65-114 44-100 (400)
475 cd02684 MIT_2 MIT: domain cont 62.4 17 0.00036 17.4 3.3 16 40-55 18-33 (75)
476 PF04840 Vps16_C: Vps16, C-ter 61.6 38 0.00083 21.4 6.2 55 28-88 208-262 (319)
477 PF10366 Vps39_1: Vacuolar sor 60.6 21 0.00046 18.5 3.2 27 30-56 41-67 (108)
478 PF03745 DUF309: Domain of unk 60.4 16 0.00036 16.7 7.5 52 33-85 4-61 (62)
479 KOG0292|consensus 60.3 40 0.00086 24.9 5.1 47 6-57 655-701 (1202)
480 KOG1538|consensus 58.8 11 0.00023 26.5 2.3 45 6-54 785-830 (1081)
481 PF07980 SusD: SusD family; I 58.4 29 0.00063 20.5 4.0 30 28-57 133-162 (266)
482 KOG2997|consensus 58.3 40 0.00086 21.6 4.4 37 30-66 21-57 (366)
483 KOG0292|consensus 57.7 77 0.0017 23.6 11.3 97 6-102 1003-1123(1202)
484 PF04761 Phage_Treg: Lactococc 57.6 17 0.00036 15.9 3.6 14 11-24 16-29 (57)
485 COG5600 Transcription-associat 54.8 58 0.0013 21.4 5.9 62 33-95 182-252 (413)
486 KOG4521|consensus 54.0 1E+02 0.0022 23.8 7.0 27 30-56 922-948 (1480)
487 KOG1497|consensus 53.9 57 0.0012 21.0 8.9 72 30-102 105-185 (399)
488 KOG2561|consensus 53.8 66 0.0014 21.7 5.6 86 6-92 175-296 (568)
489 PF14852 Fis1_TPR_N: Fis1 N-te 53.3 17 0.00036 14.6 3.1 9 66-74 5-13 (35)
490 KOG2034|consensus 52.8 27 0.00058 25.4 3.4 51 35-90 365-416 (911)
491 PF00637 Clathrin: Region in C 52.6 15 0.00032 19.6 1.9 107 6-113 19-141 (143)
492 cd00215 PTS_IIA_lac PTS_IIA, P 52.5 31 0.00068 17.5 3.7 30 26-55 13-42 (97)
493 PF02255 PTS_IIA: PTS system, 51.7 32 0.00069 17.4 3.5 29 26-54 12-40 (96)
494 cd07642 BAR_ASAP2 The Bin/Amph 51.7 42 0.00092 20.0 3.7 64 11-74 8-74 (215)
495 TIGR00985 3a0801s04tom mitocho 51.6 41 0.0009 18.7 5.0 34 66-100 94-128 (148)
496 PF00244 14-3-3: 14-3-3 protei 51.5 52 0.0011 19.8 6.4 29 32-60 5-33 (236)
497 PF04190 DUF410: Protein of un 50.5 56 0.0012 19.9 7.0 25 62-87 90-114 (260)
498 PF08311 Mad3_BUB1_I: Mad3/BUB 49.9 40 0.00086 18.0 10.1 36 81-116 81-118 (126)
499 TIGR00823 EIIA-LAC phosphotran 49.7 36 0.00078 17.4 3.7 30 26-55 15-44 (99)
500 PF12583 TPPII_N: Tripeptidyl 49.3 44 0.00095 18.3 5.0 32 76-107 89-120 (139)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.88 E-value=2.6e-21 Score=103.66 Aligned_cols=107 Identities=10% Similarity=0.095 Sum_probs=100.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
....|++++|+..|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.++.+++++|.++.. .|++++|+
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi 112 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAR 112 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
..+.+++...|+++..+..++.+....+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998876654
No 2
>KOG0553|consensus
Probab=99.87 E-value=5.7e-21 Score=109.84 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=103.1
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.+.++|++|+..|.++|.++|.++..+++.+.+|.+.|.++.|++.++.++.++|....+|..+|.+++. +|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999999888 999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
.|+++++++|++...+.+|..+....+...
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887776554
No 3
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.86 E-value=5.4e-20 Score=103.13 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=103.3
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN--VDEAI 83 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~ 83 (116)
..++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.+++...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999985443677 59999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.++++++.+|+++.++..+|.++...|++++|
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999875
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.83 E-value=1.4e-19 Score=97.02 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
-...++++++.+|++ +..+|.++...|++++|...|++++..+|.+..++..+|.++.. .|++++|+..|.+++..
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 457899999999986 55789999999999999999999999999999999999999877 89999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 93 DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+|+++.+++.+|.++...|++++|
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999998875
No 5
>KOG4626|consensus
Probab=99.83 E-value=1.5e-19 Score=112.95 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
+|.++|..+-|++.|+++++..|..+++++++|+.+...|+..+|..+|.+++...|..+++.+++|.++-. .|.++.|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A 373 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEA 373 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHH
Confidence 456677777777777777777777777777777777777777777777777777777777777777777554 6777777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
...|.++++.+|....+..+||.++.++|++++|
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence 7777777777777766677777777776666553
No 6
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=3.6e-19 Score=99.32 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=94.4
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
-|.+.|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++..++.+.|..++. +|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence 466788899999999999999999999999999999999999999999999999999998888888888887 7888888
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 83 IKLIEKAISI--DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
...|++++.. -|.....+.++|.|..+.|+++.|
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence 8888888764 234466788888888888877653
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=4.5e-19 Score=113.70 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=58.4
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.+++. +|++++|+..
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~ 455 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMAT 455 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555444 4555555555
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+++++..+|+++.++..+|.++..+|++++
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 555555555555555555555555555443
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=5.1e-19 Score=113.45 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=104.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+..+|++++|+..+++++..+|.....+..+|.++...|++++|+..|++++..+|+++.+++.+|.+++. .|++++|+
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~ 419 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAG 419 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+++++..+|++..++..+|.++..+|++++|
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999988764
No 9
>KOG4626|consensus
Probab=99.80 E-value=3.2e-19 Score=111.57 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=52.3
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.|+..+|+++|.+++.++|.++++..++|+++..+|.+++|...|.+++...|....++.++|.++-+ +|++++|+.+|
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~Y 411 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCY 411 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHH
Confidence 34445555555555555555555555555555555555555555544444444444444444444333 44444444444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
++++.+.|....++.++|..+..+|+.+
T Consensus 412 kealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 412 KEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 4444444444444444444444444433
No 10
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.80 E-value=6.6e-18 Score=102.12 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=99.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|+|++|++.|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++. +|++++|+.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999888 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
.+++++.++|+++.+...++.+....
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998888886555
No 11
>KOG1155|consensus
Probab=99.80 E-value=2.7e-18 Score=103.99 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=100.5
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.++.++|+.+|+++++++|+...+|..+|.-|..+++...|++.|++|++++|.+-.+|+.+|.+|-- ++.+.=|.-++
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf 421 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF 421 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999655 89999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+++....|.++..|..||.||.+.++.++|
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999998887765
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.79 E-value=1.4e-17 Score=88.82 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=84.8
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|++++|+..|+.....+|.+.+.|+++|.++...|++.+|+..|.+++.++|+++.++++.|.|++. .|+.+.|.+
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~ 124 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK 124 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCC
Q psy12719 85 LIEKAISIDK 94 (116)
Q Consensus 85 ~~~~~~~~~~ 94 (116)
.|+.++....
T Consensus 125 aF~~Ai~~~~ 134 (157)
T PRK15363 125 ALKAVVRICG 134 (157)
T ss_pred HHHHHHHHhc
Confidence 9999998863
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=5.8e-18 Score=100.28 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=84.3
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.+++. .|++++|+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~ 152 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999877 89999999
Q ss_pred HHHHHHHhcCCCcH
Q psy12719 84 KLIEKAISIDKSCM 97 (116)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (116)
+.++++++.+|+++
T Consensus 153 ~~~~~al~~~P~~~ 166 (296)
T PRK11189 153 DDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999999886
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=6.5e-18 Score=107.23 Aligned_cols=108 Identities=14% Similarity=0.093 Sum_probs=74.4
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. .|++++|+..+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777665 67777777777
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+++++.+|.++..+..++.++...|++++
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence 77777777766555555555555565544
No 15
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=2.9e-18 Score=95.73 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
.|...|+.+.|.+.|++++.++|++.++++++|..++.+|++++|...|++++.. .|..+.++-++|.|.++ .|+++
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq~~ 156 (250)
T COG3063 78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQFD 156 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCCch
Confidence 4567899999999999999999999999999999999999999999999999964 35667899999999888 89999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.|...++++++.+|+.+.....++..++..|++..|
T Consensus 157 ~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999999999999999998887643
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1e-17 Score=111.23 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=102.1
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..+++++..+|+++.++.++|.++.. .|++++|+..+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 48999999999999999997 88999999999999999999999999999999999999999999777 89999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+++++.+|+++.++.++|.++...|++++|
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999998764
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=8e-18 Score=106.85 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=102.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|.++..++.++.+++. .|++++|+
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~ 426 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAI 426 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999998877777777677 89999999
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISID-KSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+++++... |+++.++..+|.++...|++++|
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999875 78898999999999999998875
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.78 E-value=1.1e-17 Score=88.87 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=81.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|...+++++..+|.++.++..+|.++...|++++|..++++++..+|+++..++.+|.++.. .|++++|+
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~ 105 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESAL 105 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHH
Confidence 44568888888888888888888888888888888888888888888888888888888888888888777 78888888
Q ss_pred HHHHHHHhcCCCcHHHH
Q psy12719 84 KLIEKAISIDKSCMFAY 100 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (116)
..++++++.+|++....
T Consensus 106 ~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 106 KALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHhccccchHH
Confidence 88888888888876644
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.76 E-value=4.6e-17 Score=86.42 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=95.9
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719 15 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 94 (116)
+.+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.+++. .|++++|...+.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 468899999999999999999999999999999999999999999999999999999888 8999999999999999999
Q ss_pred CcHHHHHHHHHHHHhhcccccC
Q psy12719 95 SCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.++..+..+|.++...|++++|
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998764
No 20
>KOG1126|consensus
Probab=99.76 E-value=5.8e-18 Score=105.65 Aligned_cols=107 Identities=23% Similarity=0.296 Sum_probs=64.4
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
.+++.|..+|..++..+|.+-.+|+++|.+|.++++++.|.-.|++|+.++|.+......+|..+.+ .|+.++|+..++
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYE 547 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHH
Confidence 4455555555555555566666666666666666666666666666666666666666666666554 566666666666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 88 KAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+|+.++|.++...+..+.++...+++++
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 6666666665555555555555555544
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=5.7e-18 Score=99.67 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=91.0
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+.+.|+.++|+..++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++.. +|++++|.
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al 234 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEAL 234 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-cccccccc
Confidence 45678999999999999999999999999999999999999998888888888888888899999999887 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+++++..+|+++..+..+|.++...|+.++|
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998876
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=5.1e-17 Score=104.85 Aligned_cols=111 Identities=8% Similarity=0.081 Sum_probs=90.7
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhh----HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG----AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
...|++++|+..+.+++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++.. .|+++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~ 301 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNE 301 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 356788888888888888888888888888888888888875 7888888888888888888888888776 78888
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+|+..+++++..+|+++.++..++.++...|++++|
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888888888888888877654
No 23
>KOG1155|consensus
Probab=99.75 E-value=5e-17 Score=98.59 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=105.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
|..+++...|++.|.++++.+|.+-++|+++|++|.-++..-=|+-+|++++...|.++..|..+|.||-+ .++.++|+
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAi 452 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAI 452 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999877 99999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++|.+++........++..+|.++...++..+|
T Consensus 453 KCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 453 KCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999888889999999999999887664
No 24
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=1.8e-16 Score=94.00 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=99.2
Q ss_pred hhcHHHHHHHHHHHHhhCC---C-hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHS---N-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 4567888999999996443 3 367899999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+..+.++++++|++..++.++|.++...|++++|
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999998765
No 25
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.74 E-value=1.1e-16 Score=90.74 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=105.2
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|+|..|+..+.++....|+++.+|..+|.+|.+.|++++|...|.+++++.|..+.+..++|..++- .|+++.|..
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~ 189 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAET 189 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999887 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+.++....+.+..+..+++.+...+|++++|
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999888999999999999999998765
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.74 E-value=1.1e-16 Score=103.17 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=106.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|.+++|+..++.++...|++..++..++.++.+.+++++|...+++++..+|+++.+++.+|.++.+ .|++++|+.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~ 175 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADA 175 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999766 999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.|++++..+|+++.++..+|.++...|+.++|
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999998765
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=1.8e-16 Score=90.30 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=43.5
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..|++++|++.+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++.. .|++++|.+.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~ 121 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQ 121 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555554444444444433 4444444444
Q ss_pred HHHHHh
Q psy12719 86 IEKAIS 91 (116)
Q Consensus 86 ~~~~~~ 91 (116)
+.+++.
T Consensus 122 ~~~~~~ 127 (234)
T TIGR02521 122 FEQAIE 127 (234)
T ss_pred HHHHHh
Confidence 444443
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=1.8e-16 Score=90.29 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=103.5
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CCCHHHHHHHHHHHHHhcCCHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
.+...|++++|++.+++++...|.+..++..+|.++...|++++|...+++++... |.....+..+|.++.. .|+++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 152 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFD 152 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHH
Confidence 34567999999999999999999999999999999999999999999999999754 4567789999999887 89999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+|...+.+++..+|+++..+..++.++...|++++|
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999998764
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.73 E-value=1.2e-16 Score=85.29 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=87.2
Q ss_pred HhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12719 21 VDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99 (116)
Q Consensus 21 ~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (116)
.... ++..+..+.+|..++..|++++|...|+.++..+|.+...|+++|.++-. +|++++|+..|.+++.++|++|.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchH
Confidence 3445 66677889999999999999999999999999999999999999999555 999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccC
Q psy12719 100 YETLGTIEVQRTFVVLW 116 (116)
Q Consensus 100 ~~~l~~~~~~~~~~~~a 116 (116)
+.++|.++...|+.+.|
T Consensus 106 ~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 106 PWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 99999999999998754
No 30
>KOG1126|consensus
Probab=99.73 E-value=1.3e-16 Score=99.75 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=109.4
Q ss_pred ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
++|.++++++.|+-.|++++.++|.+......+|.++.+.|+.++|+..+++|+.++|.++...+..|.+++. .+++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-~~~~~e 575 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-LGRYVE 575 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-hcchHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|...+++.-+..|+...++..+|.+|...|+.+.|
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 99999999999999999999999999999987654
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=2.2e-16 Score=104.99 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=104.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
++.+.|++++|+..+.+++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++++|.++.. .|++++|
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA 696 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAAT 696 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999887 9999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+..+++++...|++..+....+.+.....+++.
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 999999999999998888888888777666543
No 32
>KOG0547|consensus
Probab=99.71 E-value=9.9e-17 Score=97.93 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=105.8
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
+|.+..+.++....|.++.+++|.++++|...|++.+-.+++++|+..|+++++++|.+.-++..++.+.++ ++.++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~ 447 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAES 447 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999999999999999898 8999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
...|+.+...+|+.++++...|.++..+++|++|
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 9999999999999999999999999999998865
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=3.5e-16 Score=101.08 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=103.2
Q ss_pred ccchhcHHH----HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 4 PGDRERVEQ----SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 4 ~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
+...|++++ |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~ 334 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQY 334 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCH
Confidence 345677775 89999999999999999999999999999999999999999999999999999999999877 8999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++|+..+++++..+|+++..+..++.++...|++++|
T Consensus 335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987777789999999998764
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.70 E-value=9e-16 Score=86.18 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=86.4
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHH-HhhcC--hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL-VDQED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
.+...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++.+|..++. .|++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~ 160 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADY 160 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCH
Confidence 356789999999999999999999999999999974 67777 5999999999999999999999999999888 9999
Q ss_pred HHHHHHHHHHHhcCCCcH
Q psy12719 80 DEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~ 97 (116)
++|+..++++++..|.+.
T Consensus 161 ~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 161 AQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 999999999999987654
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.70 E-value=2e-16 Score=74.89 Aligned_cols=67 Identities=34% Similarity=0.576 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy12719 27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-NVDEAIKLIEKAISIDK 94 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~ 94 (116)
++.+|..+|.+++..|++++|+..|.++++.+|+++.+++++|.++.. +| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 577899999999999999999999999999999999999999999888 88 79999999999999987
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.70 E-value=6.3e-16 Score=101.74 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=87.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|+..|++++..+|+++.++..+|.++...|+ .+|+.++++++...|+++..+..+|.+++. .|++++|.
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~ 857 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRAL 857 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence 3456777777777777777777777777777777777777 677777777777777777777788888766 78888888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.++++++.+|.++.++..++.++...|++++|
T Consensus 858 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 858 PLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888887764
No 37
>KOG1125|consensus
Probab=99.69 E-value=2.1e-16 Score=97.71 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=85.4
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
+|.-.|+|++|+++|+.++...|++...|..+|-++....+..+|+..|++|+++.|...++++++|.++.. +|.|++|
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA 517 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEA 517 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHH
Confidence 455567788888888888888888888888888888888888888888888888888888888888888776 7888888
Q ss_pred HHHHHHHHhcCCC----------cHHHHHHHHHHHHhhcccc
Q psy12719 83 IKLIEKAISIDKS----------CMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 83 ~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~ 114 (116)
.++|..++.+.+. +..+|..|-.++...++.|
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8888888876543 1246777777777666655
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=8.6e-16 Score=104.33 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=96.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH--------------HHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--------------LYVHRA 69 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~ 69 (116)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .....|
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999987642 123446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus 359 ~~~~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 359 DAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 67666 79999999999999999999988999999999999888764
No 39
>KOG1125|consensus
Probab=99.68 E-value=2.8e-16 Score=97.16 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=100.1
Q ss_pred hcHHHHHHHHHHHHhhCC--ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..+..-.+.|-.+....| .++++...+|.+|...|+|+.|+.+|+.|+...|++...|..+|-.+.. ..+.++|++.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 346667788888888888 7899999999999999999999999999999999999999999999666 7899999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|.+|+++.|+...+++++|..+..+|.|++|
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999875
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=1.7e-15 Score=102.88 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=98.2
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH-------------
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML------------- 71 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------- 71 (116)
...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999987776655444
Q ss_pred -----------------------------HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 72 -----------------------------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 72 -----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.. .|++++|++.++++++.+|+++.++..++.++...|++++|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 233 68999999999999999999999999999999999998764
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.68 E-value=1.7e-15 Score=99.74 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=97.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|...|++++..+|++..++..+|.++...|++++|...+++++..+|.+..++..+|.++.. .|++++|.
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~ 213 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELAL 213 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHH
Confidence 34568889999999999999998888889999999999999999999999999999888889889988777 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+++++..+|+++.++..++.++...|++++|
T Consensus 214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 214 AAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998888888888888888887654
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.67 E-value=6e-16 Score=75.91 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=72.7
Q ss_pred chhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
++|+++.|+..++++++..|. +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.+++. +|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999888 99999999
Q ss_pred HHHHHH
Q psy12719 84 KLIEKA 89 (116)
Q Consensus 84 ~~~~~~ 89 (116)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 43
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=91.59 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=105.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|+..+...++..|+++..+...+.++...++..+|.+.+++++..+|..+..+.++|.++++ .|++.+|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai 394 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI 394 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
..+.+.+..+|+++..|..|+..|..+|+..+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 99999999999999999999999999998765
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=3.1e-15 Score=86.12 Aligned_cols=110 Identities=20% Similarity=0.116 Sum_probs=58.8
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhH---HHHHHHHHHHhh--------cChhhHHHHHHHHhccCCCCHHHH--------
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVDQ--------EDFDGAEEYFNRSIRVDPENASLY-------- 65 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~-------- 65 (116)
...|++++|+..++++++.+|+++. +++.+|.++... |++++|+..+++++..+|++..++
T Consensus 81 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 81 YKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 3445555555555555555554443 345555555443 455555555555555555543221
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHhhccccc
Q psy12719 66 ---------VHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 66 ---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 115 (116)
..+|..++. .|++.+|+..+.+++...|+. +.++..++.++...|++++
T Consensus 161 ~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 161 LRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 234444444 566666666666666665443 3566666666666666554
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=2.8e-15 Score=86.26 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=95.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH---HHHHHHHHHHHhc-
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAMLMLQAR- 76 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~- 76 (116)
+...|++++|+..+++++...|+++ .+++.+|.++...|++++|+..++++++..|+++. +++.+|.+++. .
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~ 121 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QI 121 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hc
Confidence 4567999999999999999999875 58899999999999999999999999999998765 78999999876 4
Q ss_pred -------CCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHhhcccccC
Q psy12719 77 -------GNVDEAIKLIEKAISIDKSCMFAY-----------------ETLGTIEVQRTFVVLW 116 (116)
Q Consensus 77 -------~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a 116 (116)
|++++|++.+++++..+|++...+ ..+|.++...|++++|
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 789999999999999999885443 2456677777777653
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=4.7e-15 Score=97.36 Aligned_cols=110 Identities=10% Similarity=0.060 Sum_probs=98.8
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.+...|++++|++.+++++..+|.++.++..++.++...|++++|+..+++++...|+++. +..+|.++.. .|++++|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~A 135 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDE 135 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999999 9999999777 8999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
+..++++++..|+++.++..++.++...+..+
T Consensus 136 l~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 136 LRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 99999999999999999999998887766655
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.65 E-value=8.6e-15 Score=75.93 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=87.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG 77 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~ 77 (116)
+...|++++|++.|.+++..+|++ ..+++.+|.++...|+++.|+..|+.++...|++ +.+++.+|.++.. .+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~ 90 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LG 90 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hC
Confidence 456899999999999999999876 5688999999999999999999999999998875 6789999999887 89
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719 78 NVDEAIKLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (116)
++++|...+.+++...|+++.+...
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 91 DKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred ChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999998765443
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=5.2e-15 Score=90.55 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=53.6
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHHHHHhcCCHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 80 (116)
..|++++|+..|.++++..|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++.. .|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-RGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-CCCHH
Confidence 344555555555555555554444555555555555555555555555544444331 123344444444 45555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+|+..+.++++.+|+...++..++.++...|++++
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 55555555555555554455555555555554443
No 49
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-14 Score=84.02 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc--CCHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--GNVDEAIKLI 86 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~ 86 (116)
+.+.-+.-++..+..+|++.+-|..+|.+|+.+|+++.|...|.+++++.|+++..+..+|.+++... ....++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46677788899999999999999999999999999999999999999999999999999999987643 3577899999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++++..+|.+..+...||..++.+|++.+|
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 999999999999999999999999999864
No 50
>KOG0548|consensus
Probab=99.64 E-value=7.8e-15 Score=90.28 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=98.8
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
++..|+|..|+..|.+++..+|+++..+.+.|.+|...+.+..|+...+.+++++|++..+|...|.++.. +.+|++|.
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkAl 446 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKAL 446 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999777 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
+.|+++++.+|++.++...+..|...
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999998888888888765
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.64 E-value=3.8e-15 Score=69.66 Aligned_cols=64 Identities=28% Similarity=0.495 Sum_probs=55.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (116)
.+|..+...|++++|+..|+++++.+|.++.+++.+|.+++. +|++++|+..++++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 578888899999999999999999999999999999999887 8999999999999999988875
No 52
>KOG0547|consensus
Probab=99.64 E-value=4e-15 Score=91.08 Aligned_cols=111 Identities=35% Similarity=0.590 Sum_probs=100.8
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC------CHHHHHHHHHHHHHhcCCH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~ 79 (116)
+++.++++...|+.+++.+|.+++++...|.++..+++|+.|.+.|..++.+.|+ ++..+...|.+.+++.+++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 4567888888899999999999999999999999999999999999999999998 7888888888888888999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+|++.+.++++++|.+..++..+|.+..++|+.++|
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999998765
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=1.7e-14 Score=88.34 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=95.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 79 (116)
+...|++++|+..|.++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.++.. .|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~-~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK-AGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-CCCH
Confidence 3456889999999999999999999999999999999999999999999888754333 2467888998777 8999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++|...+.++++..|.+..++..++.++...|++++|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 160 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKA 160 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHH
Confidence 9999999999998888888889999999888887754
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.3e-15 Score=89.69 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=90.1
Q ss_pred ccchhcHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTH--SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
+...++++++...++++.... |.++.+|..+|.++.+.|++++|+..++++++.+|+++.+...++.++.. .|++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~ 198 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDE 198 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHH
Confidence 446688888888888876554 66788899999999999999999999999999999999999999998776 899999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.+.+.......|+++..+..+|.++...|++++|
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 88888888888888888899999999999988764
No 55
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.62 E-value=1.7e-14 Score=71.41 Aligned_cols=91 Identities=19% Similarity=0.342 Sum_probs=80.8
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+...+..+|.++.. .|++++|.
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 88 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEAL 88 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHH
Confidence 44578899999999999999998888899999999999999999999999999999988889999999777 79999999
Q ss_pred HHHHHHHhcCCC
Q psy12719 84 KLIEKAISIDKS 95 (116)
Q Consensus 84 ~~~~~~~~~~~~ 95 (116)
..+.+++..+|.
T Consensus 89 ~~~~~~~~~~~~ 100 (100)
T cd00189 89 EAYEKALELDPN 100 (100)
T ss_pred HHHHHHHccCCC
Confidence 999998887763
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=1.4e-14 Score=82.35 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=99.6
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.|+-+.+.....++....|.+..+...+|......|++..|+..++++....|+++.+|..+|.+|-+ .|+++.|...|
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay 157 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAY 157 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHH
Confidence 45666677777777778888888888899999999999999999999999999999999999999877 89999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+++++.|+.+.+..+++..+...|+++.|
T Consensus 158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 158 RQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 999999999999999999999999998754
No 57
>KOG0553|consensus
Probab=99.60 E-value=1.4e-14 Score=83.85 Aligned_cols=87 Identities=28% Similarity=0.333 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+-+..-|+-.+..++|.+|+..|.+||.++|.++..|.+++.+|.+ +|.++.|++.++.++.++|....+|..||.++.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred hhcccccC
Q psy12719 109 QRTFVVLW 116 (116)
Q Consensus 109 ~~~~~~~a 116 (116)
.+|++++|
T Consensus 161 ~~gk~~~A 168 (304)
T KOG0553|consen 161 ALGKYEEA 168 (304)
T ss_pred ccCcHHHH
Confidence 99998765
No 58
>PLN02789 farnesyltranstransferase
Probab=99.60 E-value=3.9e-14 Score=84.60 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=49.9
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH--HHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV--DEAIK 84 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~ 84 (116)
+.+++|+..+.+++..+|++..+|...+.++...+ ++++++..+.+++..+|++..+|+.++.+... .+.. +++..
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHH
Confidence 34445555555555555555555555555544444 34455555555555555555555544444332 3331 33444
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
.+.++++.+|++..+|...+.++...|++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 44444444444444444444444444443
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.59 E-value=1.5e-13 Score=80.05 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=85.8
Q ss_pred chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~ 79 (116)
+.|+|++|+..|+..+...|++ +.+++.+|.+++..|++++|+..|++++...|++ +.+++.+|.++.. .|++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~ 233 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDT 233 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCH
Confidence 4589999999999999999998 5799999999999999999999999999888775 7789999999777 8999
Q ss_pred HHHHHHHHHHHhcCCCcHHHH
Q psy12719 80 DEAIKLIEKAISIDKSCMFAY 100 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~ 100 (116)
++|...++++++..|++..+.
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999986543
No 60
>KOG2076|consensus
Probab=99.59 E-value=8.6e-14 Score=89.96 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=103.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..|++++|.+++.++++++|.++.+|..+|.+|..+|+.+++...+-.|-.++|.+...|..++....+ +|++.+|.-+
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999999666 9999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|.++++.+|.+....+..+.++.++|+...|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999987543
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=9e-14 Score=91.46 Aligned_cols=110 Identities=8% Similarity=0.035 Sum_probs=103.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.-.|+.++|++.+.++....|....++..+|.++...|++++|...+++++..+|.++.++..++.++.. .|++++|+.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~ 104 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALV 104 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 3468999999999999988899999999999999999999999999999999999999999999999887 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+++++...|+++. +..++.++...|++++|
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHH
Confidence 99999999999999 99999999999988764
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=99.58 E-value=9e-14 Score=74.75 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=86.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|++++|...|.-....+|.+++.|+++|-++...++|++|+..|..+..++++++.+.+..|.|++. +|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCCCcHHH
Q psy12719 85 LIEKAISIDKSCMFA 99 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (116)
+|..++. .|.+..+
T Consensus 127 ~f~~a~~-~~~~~~l 140 (165)
T PRK15331 127 CFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHh-CcchHHH
Confidence 9999998 4665543
No 63
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.57 E-value=1.9e-13 Score=75.41 Aligned_cols=92 Identities=15% Similarity=0.295 Sum_probs=63.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC--
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN-- 78 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (116)
+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+|.++.. .|+
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 123 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKA 123 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChH
Confidence 345577777777777777665543 35677777777777777777777777777777777777777777655 555
Q ss_pred ------------HHHHHHHHHHHHhcCCCc
Q psy12719 79 ------------VDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 79 ------------~~~a~~~~~~~~~~~~~~ 96 (116)
+.+|.+.+++++..+|++
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 456666666666666665
No 64
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.56 E-value=8.4e-14 Score=84.51 Aligned_cols=85 Identities=31% Similarity=0.322 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
+...|...+..|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+..+.+++.++|+++.+++.+|.++..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 45668888999999999999999999999999999999999888 89999999999999999999999999999999999
Q ss_pred cccccC
Q psy12719 111 TFVVLW 116 (116)
Q Consensus 111 ~~~~~a 116 (116)
|++++|
T Consensus 84 g~~~eA 89 (356)
T PLN03088 84 EEYQTA 89 (356)
T ss_pred CCHHHH
Confidence 998865
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=7.8e-14 Score=81.82 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=102.4
Q ss_pred ccccchhcHHHHHHHHHHHHhhCCCh-----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719 2 IVPGDRERVEQSLKEFRNFVDTHSNV-----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76 (116)
Q Consensus 2 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 76 (116)
.+|....+|++|++..++..+..+.. +..++.++..+....+.+.|+..+.++++.+|++..+-..+|.+... .
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~ 227 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-K 227 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-c
Confidence 35677889999999999999988765 45788899999999999999999999999999999999999999888 8
Q ss_pred CCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhhccccc
Q psy12719 77 GNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 115 (116)
|+|++|++.++.+++.+|.. +++...|..+|.++|+.++
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999987 7788899999999998764
No 66
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.55 E-value=3.8e-13 Score=82.08 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=98.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..++++.|++.+++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..++. .++++.|+..
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~i 256 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEI 256 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 356899999999999988875 556789999999999999999999999999999999999999888 8999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.++++...|++...|..|+.+|...|++++|
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999875
No 67
>KOG0543|consensus
Probab=99.55 E-value=2.4e-13 Score=81.68 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=94.6
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 68 (116)
+.+.|+|..|...|++++..-+.. ..++.+++.++.+.++|..|+..+.+++..+|.+..++|..
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRr 297 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRR 297 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 567899999999999988764311 12789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (116)
|.++.. +|+++.|+..|++++++.|++..+...+..+.....+
T Consensus 298 G~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 298 GQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999888 9999999999999999999998888888777655433
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.55 E-value=5.7e-13 Score=73.26 Aligned_cols=91 Identities=11% Similarity=0.178 Sum_probs=58.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHH-------H
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML-------Q 74 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------~ 74 (116)
...|++++|+..|.+++...|++ +.++..+|.++...|++++|+..+++++.++|.....+..+|.++. .
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~ 125 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE 125 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence 34567777777777777665543 3466777777777777777777777777777777666666666655 3
Q ss_pred hcCCHH-------HHHHHHHHHHhcCCCc
Q psy12719 75 ARGNVD-------EAIKLIEKAISIDKSC 96 (116)
Q Consensus 75 ~~~~~~-------~a~~~~~~~~~~~~~~ 96 (116)
.|+++ +|...+++++..+|.+
T Consensus 126 -~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 126 -QGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 45554 4444444555555543
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.54 E-value=2.3e-14 Score=66.96 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=55.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 62 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 62 (116)
.+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 356789999999999999999999999999999999999999999999999999999875
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.54 E-value=2e-13 Score=67.54 Aligned_cols=86 Identities=27% Similarity=0.351 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
++..+|.++...|++++|+..++++++..|.+..++..+|.++.. .+++++|.+.+.+++...|.++.++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999887 8999999999999999999999999999999999
Q ss_pred hcccccC
Q psy12719 110 RTFVVLW 116 (116)
Q Consensus 110 ~~~~~~a 116 (116)
.|++++|
T Consensus 81 ~~~~~~a 87 (100)
T cd00189 81 LGKYEEA 87 (100)
T ss_pred HHhHHHH
Confidence 9887653
No 71
>KOG0548|consensus
Probab=99.54 E-value=1.9e-13 Score=84.32 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=98.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
..+.|+|+.|+..|..++.++|.+...+.+...++...|+|++|.+.-.+.++++|+.+..|..+|..++. +|+|++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
..|.+.++.+|++..++..++.++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999888887
No 72
>KOG3060|consensus
Probab=99.53 E-value=3.8e-13 Score=76.62 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=52.0
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.++.+-|..++.+.-...|++.++....|..+...|++++|+++|...+.-+|.+..++-..-.+ .+.+|+.-+|++.+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi-lka~GK~l~aIk~l 143 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI-LKAQGKNLEAIKEL 143 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH-HHHcCCcHHHHHHH
Confidence 34444555555555445555555555555555555555555555555555555544443333222 12244444444444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
...++.++.++++|..++.+|...|++++
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 44444444444444444444444444443
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.52 E-value=5.5e-13 Score=73.33 Aligned_cols=99 Identities=9% Similarity=0.074 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
.+..+...+...++..+.. ...+..+|.++...|++++|+..|++++.+.|+. +.++.++|.++.. .|++++|+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~ 92 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKAL 92 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHH
Confidence 4666666776665565554 5678999999999999999999999999887653 4589999999887 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
..+++++...|.....+..++.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999988
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.52 E-value=1.3e-12 Score=70.21 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=93.5
Q ss_pred chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~ 79 (116)
..++...+...++..+..+|++ ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.++.+++. .|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence 4678888888899999999988 5678889999999999999999999999987665 4578889999888 8999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++|+..+.. +...+-.+.++..+|.++...|++++|
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 999999966 344455677899999999999998875
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.52 E-value=1.5e-13 Score=64.75 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=31.6
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 68 (116)
.|++++|+..|++++..+|++..++..+|.++...|++++|...+.+++..+|+++..+..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555544444333
No 76
>PLN02789 farnesyltranstransferase
Probab=99.51 E-value=1.4e-12 Score=78.00 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcCh--hhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF--DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
++++++..+.+++..+|++..+|...+.+....++. ++++..+.+++..+|++..+|..++.++.. .|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 579999999999999999999999999998888874 678999999999999999999999999766 89999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
.++++.+|.+..+|...+.+....
T Consensus 166 ~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 166 HQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999988765
No 77
>KOG1173|consensus
Probab=99.51 E-value=2e-13 Score=84.77 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 104 (116)
+.++|.++.+.+.+.+|+..+++++.+.|.++.++..+|.+|.. +|+++.|+..|.+++.+.|++..+-..|+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44455555555555555555555555555555555555555444 45555555555555555554433333333
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.51 E-value=1.9e-13 Score=64.34 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=61.5
Q ss_pred HhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 39 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
...|++++|+..|++++..+|++..+++.++.+++. .|++++|...+.+++..+|+++..+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 578999999999999999999999999999999988 8999999999999999999998888777653
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=7.2e-13 Score=87.32 Aligned_cols=114 Identities=8% Similarity=-0.069 Sum_probs=92.1
Q ss_pred ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
++..+.|+++.|++.|.++++.+|.++.....+..++...|+.++|+.++++++...|........+|.++.. .|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHH
Confidence 3456789999999999999999999864434777788888999999999999994444555555555778666 799999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|++.++++++.+|+++.++..++.++...++.++|
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999998888888888888777654
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.50 E-value=6.8e-14 Score=66.10 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=53.9
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCC
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDP 59 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~ 59 (116)
.+...|++++|+..|+++++.+|+++.++.++|.++..+| ++++|+..++++++++|
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3457899999999999999999999999999999999999 79999999999999988
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=1.2e-12 Score=85.04 Aligned_cols=99 Identities=10% Similarity=-0.049 Sum_probs=91.5
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
........|.+++++..+|.+....|.+++|..+++.++...|++..++..++.++.+ .+++++|...+++++..+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCC
Confidence 3333445588899999999999999999999999999999999999999999999777 899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccC
Q psy12719 97 MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a 116 (116)
+..+..+|.++...|++++|
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999875
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.50 E-value=4.5e-13 Score=63.93 Aligned_cols=69 Identities=28% Similarity=0.482 Sum_probs=51.8
Q ss_pred HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 104 (116)
..++...+++++|++++++++..+|.++..+..+|.+++. .|++.+|.+.++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4566777788888888888888888888888888888776 78888888888888888777766554443
No 83
>KOG3060|consensus
Probab=99.50 E-value=1.3e-12 Score=74.47 Aligned_cols=108 Identities=10% Similarity=0.078 Sum_probs=79.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|.+++|+++|+..+..+|.+..++...-.+...+|+--+|++.+..-++..+.+..+|..++.+|+. .|++++|.
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~ 174 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAA 174 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHH
Confidence 34567788888888888888877777666666666667777777777777777777777777777777776 67777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (116)
-++++.+-..|.++..+..++.+++-+|.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 77777777777777777777777666554
No 84
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.49 E-value=1e-12 Score=68.11 Aligned_cols=88 Identities=15% Similarity=0.027 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE 101 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 101 (116)
++.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.+++. .|++++|+..+++++...|+. +.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4567899999999999999999999999998876 5689999999888 899999999999999998875 67899
Q ss_pred HHHHHHHhhcccccC
Q psy12719 102 TLGTIEVQRTFVVLW 116 (116)
Q Consensus 102 ~l~~~~~~~~~~~~a 116 (116)
.+|.++...|++++|
T Consensus 81 ~~~~~~~~~~~~~~A 95 (119)
T TIGR02795 81 KLGMSLQELGDKEKA 95 (119)
T ss_pred HHHHHHHHhCChHHH
Confidence 999999999987754
No 85
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.48 E-value=3e-12 Score=73.75 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=88.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG 77 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~ 77 (116)
+...|+|..|...|...++..|++ +++++.||.+++.+|++++|...|..+.+..|++ ++.++.+|.+... +|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~ 229 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG 229 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc
Confidence 346789999999999999999987 6799999999999999999999999999988766 6789999999777 99
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719 78 NVDEAIKLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (116)
+.++|...|+++++..|+.+.+...
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999998765443
No 86
>KOG4162|consensus
Probab=99.48 E-value=8.5e-13 Score=84.44 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=96.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH-
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK- 84 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~- 84 (116)
..+.-+++.-++.++-..+|.++.+|+..|.++...|.+.+|.+.|..++.++|+++.....+|.++.. .|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~ 740 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKR 740 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHH
Confidence 445667778888888889999999999999999999999999999999999999999999999999887 788777777
Q ss_pred -HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 -LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+..+++.+|.++++|+.+|.++..+|+.++|
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 89999999999999999999999999988754
No 87
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.47 E-value=1.6e-12 Score=71.78 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (116)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++.. .|++++|+..+.+++...|.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 345678999999999999999999999999887654 5689999999888 899999999999999999999999999
Q ss_pred HHHHHHhhccc
Q psy12719 103 LGTIEVQRTFV 113 (116)
Q Consensus 103 l~~~~~~~~~~ 113 (116)
+|.++...|+.
T Consensus 112 lg~~~~~~g~~ 122 (172)
T PRK02603 112 IAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHcCCh
Confidence 99999887764
No 88
>KOG0550|consensus
Probab=99.45 E-value=1.1e-12 Score=79.21 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=75.3
Q ss_pred chhcHHHHHHHHHHHHhhCCChhH------------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVE------------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRA 69 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~ 69 (116)
...+.+.++..|++++.++|++.+ .+...|+-.++.|++..|.+.|..+|.++|.+ +..|.+++
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 345667777777777777776532 45556666677777777777777777777765 34566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
.+..+ +|+.++|+.....++.++|....++...|.|+..++++++
T Consensus 295 ~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 295 LVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666 6777777777777777777777777777777777766654
No 89
>KOG1156|consensus
Probab=99.44 E-value=1.3e-12 Score=82.38 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...++|...++..+..++.+|++++..-..|..+...|+.++|....+.+++.++.+..+|+.+|.++-. .++|++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999998554 799999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
+|+.|+.+.|++...|..++....++++++
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999888875
No 90
>KOG4234|consensus
Probab=99.43 E-value=7.5e-12 Score=69.49 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
+..|+|.+|...|..++..+|..+ ..+.+.|.+..+++.++.|+..+.++|.++|....++..++.+|-+ ...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhH
Confidence 567999999999999999998764 4678889999999999999999999999999999999999999877 8999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
++|++.|.+.++.+|....+...++++
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999876655554443
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=7.8e-12 Score=77.39 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=99.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-HHHHHHHHHHHHhcCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~ 83 (116)
...|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++.. .|++++|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHH
Confidence 4568999999999999999888888888889999999999999999999999888875 466667888888 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+++..+..|+++.++..++.++...|++++|
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999998753
No 92
>KOG1129|consensus
Probab=99.43 E-value=1.6e-12 Score=76.95 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=82.6
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC---CCHHHHHHHHHHHHHhcCCHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
.-.++.+-|+.+|.+.+...-.+++.++++|.+++..++++-++..|++++.... .-.++|+++|.+... .|++..
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nl 413 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNL 413 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHH
Confidence 3344555566666666666556666777888888888888888888888876543 235678888888666 688888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|.++|+-++..++++.+++.+|+.+..+.|+.++|
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 88888888888888888888888888888877654
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=2.1e-13 Score=66.81 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=65.7
Q ss_pred hhcChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 40 DQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 40 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+|+++.|+..+++++...|. +...++.+|.++++ .|++++|+..+++ ...+|.++.....+|.++..+|++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999999999995 46678889999998 9999999999999 888888888889999999999999875
No 94
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.42 E-value=1.6e-12 Score=62.01 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=62.4
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 70 (116)
++...+++++|++.+++++..+|+++..+..+|.++...|++++|+..++++++..|+++.+....+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999887665543
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=4.7e-12 Score=76.85 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM----FAYETLG 104 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~ 104 (116)
.+...+|.++..+|++++|...+++++..+|+++.++..+|.+++. .|++++|+..+++++...|..+ ..+..++
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 3445567777888899999999999999999988888888988877 8999999999999888876432 3466788
Q ss_pred HHHHhhcccccC
Q psy12719 105 TIEVQRTFVVLW 116 (116)
Q Consensus 105 ~~~~~~~~~~~a 116 (116)
.++...|++++|
T Consensus 194 ~~~~~~G~~~~A 205 (355)
T cd05804 194 LFYLERGDYEAA 205 (355)
T ss_pred HHHHHCCCHHHH
Confidence 888888888764
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=99.41 E-value=2.6e-12 Score=69.17 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 105 (116)
+..+..+..|.-++..|++++|...|+-+...+|.++..|+.+|.++.. ++++++|+..|..+..+++++|...+..|.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 3455678889999999999999999999999999999999999999665 899999999999999999999999999999
Q ss_pred HHHhhcccccC
Q psy12719 106 IEVQRTFVVLW 116 (116)
Q Consensus 106 ~~~~~~~~~~a 116 (116)
|+..+|+.+.|
T Consensus 114 C~l~l~~~~~A 124 (165)
T PRK15331 114 CQLLMRKAAKA 124 (165)
T ss_pred HHHHhCCHHHH
Confidence 99999988764
No 97
>KOG0495|consensus
Probab=99.41 E-value=8.9e-12 Score=79.29 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=103.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
..+++.++|+..++++++..|.....|+.+|+++.+.++.+.|...|...++..|.++..|..++.+--+ .|+..+|..
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~ 740 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARS 740 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999666 789999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+.++.-.+|++...|.....+....|+.+.|
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999888877643
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=5.6e-12 Score=76.51 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH----HHHHHHHHHHHHhcCCH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA----SLYVHRAMLMLQARGNV 79 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 79 (116)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.++ ..+..++.++.. .|++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~ 202 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDY 202 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCH
Confidence 34567788888888888888888877777888888888888888888888887765432 245567777666 7888
Q ss_pred HHHHHHHHHHHhcCC
Q psy12719 80 DEAIKLIEKAISIDK 94 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~ 94 (116)
++|...+++++...|
T Consensus 203 ~~A~~~~~~~~~~~~ 217 (355)
T cd05804 203 EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHhcccc
Confidence 888888888776655
No 99
>KOG2003|consensus
Probab=99.41 E-value=5.4e-12 Score=77.75 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=101.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|++++|.+.|.+++.-+..+..+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|-. +.+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHH
Confidence 3468999999999999999999999999999999999999999999998877777899999999999766 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++.++..+-|++|.++..|+.+|-+.|+-.+|
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 99999999999999999999999988876543
No 100
>KOG2002|consensus
Probab=99.39 E-value=9.2e-13 Score=86.05 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=74.0
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.+.+++|++.|.++++.+|.+.-+-.++|.++...|++.+|+.+|.+...-..+.+.+|.++|.|+.. +|+|..|++.|
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHHHH
Confidence 45567777777777777777777777777777777777777777777666555666677777777666 67777777777
Q ss_pred HHHHhcCC--CcHHHHHHHHHHHHhhccccc
Q psy12719 87 EKAISIDK--SCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 87 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+.++..+- +++.++..||.++...|.+.+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 77766542 346666677777666665543
No 101
>KOG4648|consensus
Probab=99.39 E-value=2.8e-12 Score=76.43 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=94.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.|+++|.|++|+++|.+++..+|.++..+.+.+..|++.+.|..|...+..++.++.....+|..++.+-.. +|+..+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999776 8999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
.+.++.++.+.|++.++...++.+
T Consensus 185 KkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 185 KKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999987766655554
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.8e-11 Score=70.60 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh---cChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
+|...|+++.|...|.+++++.|++++.+..+|.++..+ ....++...+++++..+|.+..+.+.+|..++. .|++
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~ 243 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDY 243 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccH
Confidence 366789999999999999999999999999999988754 356789999999999999999999999999888 8999
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy12719 80 DEAIKLIEKAISIDKSC 96 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~ 96 (116)
.+|...++..++..|.+
T Consensus 244 ~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 244 AEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999998765
No 103
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.39 E-value=5.9e-12 Score=77.22 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=64.8
Q ss_pred hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.+|+++..++++|.+++..|++++|+..|++++.++|++.. +|+++|.+|.. +|++++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 45888999999999999999999999999999999999985 49999999887 99999999999999997
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.2e-11 Score=76.53 Aligned_cols=111 Identities=9% Similarity=-0.029 Sum_probs=92.2
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHH--HHHHHHHHhhcChhhHHHHHHHHhccCCCCH--HHHHHHHHHHHHhcCCH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEAC--TLFAQVLVDQEDFDGAEEYFNRSIRVDPENA--SLYVHRAMLMLQARGNV 79 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (116)
+...|++++|.+.++++++..|++.... ..........++.+.+...++++++..|+++ .....+|.++++ .|++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~ 351 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEF 351 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccH
Confidence 4567899999999999999999987531 2233333456888999999999999999999 889999999888 8999
Q ss_pred HHHHHHHH--HHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIE--KAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++|.+.|+ .+++..|+... +..+|.++...|+.++|
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 99999999 57778888766 55999999999987764
No 105
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.38 E-value=3.3e-11 Score=76.32 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=85.2
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--------ChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHh
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--------DFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQA 75 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~ 75 (116)
..++...|+.+|+++++.+|+.+.++-.++.++.... +...+.....+++.. +|..+.++..+|..+..
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~- 432 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV- 432 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-
Confidence 3456889999999999999999888888777765432 234555556665553 67777888888888776
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.|++++|...+++++.++|+ ..+|..+|.++...|++++|
T Consensus 433 ~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 79999999999999999985 67899999999999988764
No 106
>KOG1128|consensus
Probab=99.37 E-value=3.7e-12 Score=81.30 Aligned_cols=110 Identities=11% Similarity=0.123 Sum_probs=101.4
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
+.++|+++.+.++..++++|-....|+.+|.+..+.++++.|..+|.+++..+|++..+|.+++..|.. .++-.+|...
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~ 575 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK 575 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999888 8999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.++++.+-++..+|.+...+....|.+++|
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 9999999988888888888888888877653
No 107
>PRK11906 transcriptional regulator; Provisional
Probab=99.36 E-value=4.9e-11 Score=73.39 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHH---hhCCChhHHHHHHHHHHHhh---------cChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719 9 RVEQSLKEFRNFV---DTHSNVVEACTLFAQVLVDQ---------EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76 (116)
Q Consensus 9 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 76 (116)
....|..+|.+++ ..+|+...++..++.+++.. .+..+|....++++.++|.++.++..+|.+... .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 3455566666666 66666666666665555432 233455555666666666666666666665444 4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
++++.|...|++++.++|+.+.+|+..|.+..-.|+.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 556666666666666666666666666666655555443
No 108
>KOG1129|consensus
Probab=99.35 E-value=3.8e-12 Score=75.36 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
++++++|.++|+.+++.+|.+.++.-.+|..|+..++.+-|+.+|++.+++.-.++..+.++|.|.+. .++++-+...+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHH
Confidence 44455555555555555555554444444445555555555555555555555555555555555544 45555555555
Q ss_pred HHHHhcCC--C-cHHHHHHHHHHHHhhccc
Q psy12719 87 EKAISIDK--S-CMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 87 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 113 (116)
++++.... + -.++|++++.+....||+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccch
Confidence 55555422 1 144555555555555544
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=3e-11 Score=79.89 Aligned_cols=106 Identities=9% Similarity=0.023 Sum_probs=71.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++.. .++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHH
Confidence 4456777777777777777777777777777777777777777777777777777764443 334444333 46665677
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
+.++++++.+|++..++..+..++...|
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777666666665544
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.35 E-value=3.9e-11 Score=70.12 Aligned_cols=87 Identities=16% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHH-HhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719 29 EACTLFAQVL-VDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE 101 (116)
Q Consensus 29 ~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 101 (116)
...+..+..+ ...|++++|+..|+..+...|++ +.+++.+|.+++. .|++++|+..|++++...|++ +.+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4566777765 56799999999999999999998 5799999999998 899999999999999887764 88999
Q ss_pred HHHHHHHhhcccccC
Q psy12719 102 TLGTIEVQRTFVVLW 116 (116)
Q Consensus 102 ~l~~~~~~~~~~~~a 116 (116)
.+|.++..+|++++|
T Consensus 222 klg~~~~~~g~~~~A 236 (263)
T PRK10803 222 KVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHcCCHHHH
Confidence 999999999988764
No 111
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.34 E-value=7.5e-11 Score=62.34 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=79.9
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHhcCC
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGN 78 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (116)
.+.|+|.+|++.|+......|.. ..+.+.++.+++..+++++|+..+++-++++|.++ .+++..|.+++. +..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhh
Confidence 45789999999999999888765 56888999999999999999999999999998874 478888988877 554
Q ss_pred ---------------HHHHHHHHHHHHhcCCCcHHH
Q psy12719 79 ---------------VDEAIKLIEKAISIDKSCMFA 99 (116)
Q Consensus 79 ---------------~~~a~~~~~~~~~~~~~~~~~ 99 (116)
...|...|++.+...|++..+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 788999999999999987543
No 112
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=1.2e-10 Score=72.03 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=84.9
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH-HHHHHHHHHHhcCCHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL-YVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~ 85 (116)
.|+|++|++...+.-+..+.....+...+.....+|+++.|..++.++.+.+|++..+ ....+..+.. .|++++|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 5888888877776555433323334444666689999999999999999988887543 3444777777 8999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+++..+.+|+++.++..++.++...|++++|
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988753
No 113
>KOG1173|consensus
Probab=99.33 E-value=8.9e-12 Score=77.71 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=99.7
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|++++|..+|.++..++|..+.+|...|.++...++.+.|+.+|.+|-++-|..-.....+|.-|.+ .+++..|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHH
Confidence 4458899999999999999999999999999999999999999999999999998887777888887666 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+.+++.+.|.+|.+...+|.+.+..+.+.+|
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 99999999999999999999998877776654
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.33 E-value=7.7e-11 Score=61.13 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=74.3
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC---CHHHHHHHHHHHHHhcC
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---NASLYVHRAMLMLQARG 77 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~ 77 (116)
+...|+.++|+..|++++...... ..++..+|.++...|++++|...+++++...|+ +..+...++.++.. .|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence 456789999999999999876443 568889999999999999999999999998888 67777778888777 89
Q ss_pred CHHHHHHHHHHHHh
Q psy12719 78 NVDEAIKLIEKAIS 91 (116)
Q Consensus 78 ~~~~a~~~~~~~~~ 91 (116)
++++|++.+..++.
T Consensus 90 r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 RPKEALEWLLEALA 103 (120)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988775
No 115
>KOG0550|consensus
Probab=99.33 E-value=1.8e-11 Score=74.14 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=84.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
.+.|.+..|.++|..++.++|++ +..+.+++.+..+.|+..+|+..++.++.++|....++...|.|++. +++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHHH
Confidence 46799999999999999999987 45788999999999999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHhcCCC
Q psy12719 81 EAIKLIEKAISIDKS 95 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~ 95 (116)
+|++.++++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999998766
No 116
>KOG4162|consensus
Probab=99.33 E-value=2.4e-11 Score=78.05 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=86.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHH--HHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE--YFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
...|.+.+|.+.|..++..+|+++.....+|.++...|+..-|.. .+..+++++|.+..+|+.+|.++-. .|+.++|
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~A 773 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQA 773 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHH
Confidence 457889999999999999999999999999999999999888887 9999999999999999999999555 9999999
Q ss_pred HHHHHHHHhcCCCcHH
Q psy12719 83 IKLIEKAISIDKSCMF 98 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~ 98 (116)
.++|..++++.+.+|.
T Consensus 774 aecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 774 AECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhhccCCCc
Confidence 9999999999888763
No 117
>KOG1156|consensus
Probab=99.33 E-value=3.4e-11 Score=76.20 Aligned_cols=112 Identities=7% Similarity=0.086 Sum_probs=105.0
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
....|+.++|.+....++..++.+..+|-.+|.++...++|++|+.+|+.|+...|++..++..++....+ +++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999888 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..-.+.++..|+....|..++..+...|++..|
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887643
No 118
>KOG1840|consensus
Probab=99.32 E-value=1.6e-11 Score=77.07 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=93.8
Q ss_pred cccchhcHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 66 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~ 66 (116)
.|..+|+|+.|+..++.+++. .|.-......+|.+|...+++.+|+..|++++.+ +|..+.++.
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 456789999999999999998 4555566667999999999999999999999865 344567899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhhcccccC
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKAISID--------KSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+++.+|+. .|++++|..++++++++. |.-...+..++.++..++++++|
T Consensus 288 nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 288 NLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 99999988 899999999999999762 23356677888888888887764
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=1.4e-10 Score=68.75 Aligned_cols=110 Identities=18% Similarity=0.093 Sum_probs=89.7
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
++..+++++.|.+.++.+.+.+.++.-+....+++....| .+.+|...|+......+.++..+..++.++.. +|+++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~ 218 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYE 218 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHH
Confidence 3456789999999999998888777666656666655555 69999999999988888899999999999888 99999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
+|.+.+.+++..+|+++.++.+++.+...+|+.
T Consensus 219 eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 219 EAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998888876
No 120
>KOG2076|consensus
Probab=99.31 E-value=6.8e-11 Score=77.04 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=84.1
Q ss_pred hhcHHHHHHHHHHHHhhCC-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-CCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-ENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
..+..+++..+..--...| +.++.++.++..+...|++.+|+.++..++...+ ++..+|+.+|.|+.. +|.+++|++
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~-l~e~e~A~e 470 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME-LGEYEEAIE 470 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH-HhhHHHHHH
Confidence 3344444444433222223 3467888899999999999999999998887776 446788999999776 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.|.+++...|++.++...|+.++.++|++++|
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999988764
No 121
>KOG1840|consensus
Probab=99.31 E-value=1.6e-11 Score=77.05 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=93.2
Q ss_pred cccchhcHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYV 66 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~ 66 (116)
.|..++++.+|+..|++++.+. |.-+.++.++|.+|...|++++|..++.+++.+. |+-...+.
T Consensus 250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 4677899999999999999764 3335689999999999999999999999998764 23345677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+++.++.. ++++++|+..+++++++ ++..+..+.++|.++..+|++++|
T Consensus 330 ~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 330 ELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 88888666 89999999999999876 223467889999999999999875
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.31 E-value=4e-11 Score=79.34 Aligned_cols=109 Identities=8% Similarity=-0.012 Sum_probs=95.2
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-------------------HH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------------------SL 64 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~ 64 (116)
+...+++++++..++..++.+|+...+++.+|.++...+++.++.-+ .++...+.+. .+
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A 118 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA 118 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence 34678999999999999999999999999999999999888877666 6665555554 79
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
++.+|.||-+ +|+.++|...++++++.+|+++.+..++|-.+... +.++|
T Consensus 119 l~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 119 LRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 9999999666 99999999999999999999999999999999887 76654
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=99.30 E-value=2.9e-10 Score=70.12 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=84.8
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
..+..+|....+++++.+|.++.++..+|.+....++++.|...|++++.++|+++.+++..|..++. .|+.++|.+.+
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred HHHHhcCCCcH
Q psy12719 87 EKAISIDKSCM 97 (116)
Q Consensus 87 ~~~~~~~~~~~ 97 (116)
+++++++|...
T Consensus 396 ~~alrLsP~~~ 406 (458)
T PRK11906 396 DKSLQLEPRRR 406 (458)
T ss_pred HHHhccCchhh
Confidence 99999999763
No 124
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=1e-10 Score=72.32 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=88.1
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|+.++|...++++++..| ++.....++.+ ..++.++++...++.++..|+++..+..+|.++.. .+++++|.+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~ 349 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASL 349 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 457889999999999998444 45544455544 45889999999999999999999999999999887 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.|+++++..|++.. +..++.++...|+.++|
T Consensus 350 ~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 350 AFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 99999999998764 56899999998887764
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.29 E-value=3.6e-10 Score=65.59 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=76.7
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhH---HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC-
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG- 77 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~- 77 (116)
...|+|++|++.|++.+...|.++. +.+.+|.++++.+++++|+..+++.++.+|++ +.+++.+|.++.. .+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~~ 121 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LDD 121 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cch
Confidence 4568999999999999999998855 45899999999999999999999999999877 4578888987533 22
Q ss_pred --------------C---HHHHHHHHHHHHhcCCCc
Q psy12719 78 --------------N---VDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 78 --------------~---~~~a~~~~~~~~~~~~~~ 96 (116)
+ ..+|+..+++.++..|++
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 1 357889999999999987
No 126
>KOG0624|consensus
Probab=99.29 E-value=9.2e-11 Score=70.06 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=90.3
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..|++..|+..|..+++.+|++..+++..|.+|...|+...|+..+.+.+++.|+...+...+|.++++ +|.+++|+..
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~D 128 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEAD 128 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhcCCCc---HHHHHHHHHH
Q psy12719 86 IEKAISIDKSC---MFAYETLGTI 106 (116)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~l~~~ 106 (116)
|...++.+|++ .+++..++.+
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhH
Confidence 99999999965 3344444433
No 127
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.29 E-value=2.6e-10 Score=59.17 Aligned_cols=87 Identities=15% Similarity=-0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS---CMFAYET 102 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 102 (116)
.+++..|.++-..|+.++|+..|++++...... ..++..+|..+.. +|++++|+..+++.+...|+ +..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 567899999999999999999999999976544 5688999999666 99999999999999999898 6778888
Q ss_pred HHHHHHhhcccccC
Q psy12719 103 LGTIEVQRTFVVLW 116 (116)
Q Consensus 103 l~~~~~~~~~~~~a 116 (116)
++.++...|+.++|
T Consensus 81 ~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 81 LALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHCCCHHHH
Confidence 99999999988764
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.29 E-value=9.8e-11 Score=62.97 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=72.8
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
+...|++++|...|+.++...|+. +.+.+.++.++...|++++|+..++. +...+..+.++..+|.++.. .|+++
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~ 135 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYD 135 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHH
Confidence 456799999999999999988665 45788999999999999999999976 44445567788899999888 99999
Q ss_pred HHHHHHHHHH
Q psy12719 81 EAIKLIEKAI 90 (116)
Q Consensus 81 ~a~~~~~~~~ 90 (116)
+|+..|++++
T Consensus 136 ~A~~~y~~Al 145 (145)
T PF09976_consen 136 EARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 129
>KOG2002|consensus
Probab=99.28 E-value=7e-11 Score=77.62 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=60.6
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC----CH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG----NV 79 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~ 79 (116)
..+|+|++|..+|.+++..+|++ .-++.++|+++...|++..|..+|.+.+...|++..+...+|.+|.. .+ ..
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~~~~~ 396 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKKQEKR 396 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhhhHHH
Confidence 44566666666666666666555 44555666666666666666666666666666666666666655443 22 34
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
+.|...+.+++...|.+..+|..++.++..
T Consensus 397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 555556666666666666666666555544
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.26 E-value=3.4e-10 Score=64.10 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=75.0
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHh--
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQA-- 75 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~-- 75 (116)
....|+|.+|+..|++.+...|.+ +.+.+.+|.+++..|+++.|+..+++.++..|++ +.+++.+|.+++..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 356799999999999999999876 5689999999999999999999999999999987 45788899987652
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCcH
Q psy12719 76 --------RGNVDEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 76 --------~~~~~~a~~~~~~~~~~~~~~~ 97 (116)
.+...+|+..++..+...|+++
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 1234689999999999999873
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=6.7e-10 Score=68.51 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=83.8
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...++..+|.+.+++++..+|+.+..+.++|+++...|++++|+..++..+..+|+++..|..++..|-. +|+..++.
T Consensus 350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~ 428 (484)
T COG4783 350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEAL 428 (484)
T ss_pred HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999766 78777777
Q ss_pred HHHHHHHhcCCCcHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (116)
....+..........+...
T Consensus 429 ~A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 429 LARAEGYALAGRLEQAIIF 447 (484)
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 7777766665554443333
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.23 E-value=2.3e-11 Score=58.70 Aligned_cols=67 Identities=19% Similarity=0.395 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC----CC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD----PE---NASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
|+...++..+|.++...|++++|+.+|++++.+. ++ ...++.++|.++.. .|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 4557789999999999999999999999998652 22 25678999999877 99999999999999875
No 133
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.23 E-value=6.2e-10 Score=60.83 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc----------ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE----------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--- 75 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 75 (116)
-|+.|.+.++.....+|.+++.+.+-|..+..+. .+++|+.-|+.++.++|+...+++.+|.++...
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999998888887776543 356778888999999999999999999997651
Q ss_pred -------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 76 -------RGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 76 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
...+++|..+|+++...+|++......|..+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1238899999999999999987655555443
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=2.4e-10 Score=67.59 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=93.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHHHHHhcCC
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAMLMLQARGN 78 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~ 78 (116)
|+..|-++.|++.|...++...--..+.-.+..+|....+|++|++.-++..++.++. +..+..++..+.. ..+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhh
Confidence 4456778888888888776554445677888888999999999999999888888765 4567788888666 799
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 79 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.++|...+.++++.+|++..+-..+|.++...|++.+|
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence 99999999999999999999999999999999998764
No 135
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=2.9e-10 Score=64.10 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=88.2
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.|.+.|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|....++.++|..++- -|++.-|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhh
Confidence 456678888899999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHHhcCCCcH
Q psy12719 83 IKLIEKAISIDKSCM 97 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~ 97 (116)
.+.+.+..+.+|++|
T Consensus 153 q~d~~~fYQ~D~~DP 167 (297)
T COG4785 153 QDDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHHhcCCCCh
Confidence 999999999999986
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.19 E-value=1.4e-09 Score=69.13 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=77.8
Q ss_pred hcHHHHHHHHHHHHhh--CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDT--HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
.+...+.+...+++.. +|.++.++..+|......|++++|...+++++.++| +..+|..+|.++.. .|++++|++.
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3456677777776664 677788899999999999999999999999999999 58899999999887 8999999999
Q ss_pred HHHHHhcCCCcHH
Q psy12719 86 IEKAISIDKSCMF 98 (116)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (116)
+.+++.++|.++.
T Consensus 476 ~~~A~~L~P~~pt 488 (517)
T PRK10153 476 YSTAFNLRPGENT 488 (517)
T ss_pred HHHHHhcCCCCch
Confidence 9999999999874
No 137
>KOG1127|consensus
Probab=99.15 E-value=6e-10 Score=73.84 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=87.7
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.|.+.+++..|+..|+.+++.+|.+...|..+|.+|...|++..|.++|.++..++|.+....+..+.+... .|.|.++
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHHHH
Confidence 356778889999999999999999999999999999999999999999999999999999888888888776 8999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+..+...+........+...++.++.
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVI 675 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99998888776655545555555443
No 138
>KOG1128|consensus
Probab=99.15 E-value=1.5e-10 Score=74.22 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=89.5
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHH----------------------------HHHHhhcChhhHHHHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA----------------------------QVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~A~~~~~~a 54 (116)
+|...|+..+|..+..+-++ .|.++..|..+| .....+++|.++...++..
T Consensus 433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS 511 (777)
T ss_pred HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH
Confidence 34555666677777666666 333344333333 3334468999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 55 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+.++|-....|+.+|.+.++ .+++..|.+.|.+++...|++.++|.+++..|...|+-.+
T Consensus 512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 99999999999999999998 9999999999999999999999999999999999887654
No 139
>KOG4642|consensus
Probab=99.14 E-value=5.2e-10 Score=63.67 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=81.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.....|..|+..|.+++..+|..+..+.+.+.++++.++++.+....+++++++|+...+++.+|...+. ...++.|+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~ 99 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIK 99 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999999999999888 899999999
Q ss_pred HHHHHHhc
Q psy12719 85 LIEKAISI 92 (116)
Q Consensus 85 ~~~~~~~~ 92 (116)
.++++.++
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999665
No 140
>KOG4555|consensus
Probab=99.14 E-value=5.1e-09 Score=54.71 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=78.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~ 80 (116)
...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|...+++++++.... ..++...|.+|-. .|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchH
Confidence 456889999999999999999999999999999999999999999999999876443 4568889998655 89999
Q ss_pred HHHHHHHHHHhcCCCc
Q psy12719 81 EAIKLIEKAISIDKSC 96 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~ 96 (116)
.|...|+.+-++....
T Consensus 133 ~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 133 AARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhHHHHHHhCCHH
Confidence 9999999888775544
No 141
>KOG0543|consensus
Probab=99.14 E-value=7.4e-10 Score=67.05 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=81.4
Q ss_pred ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
+++.++++|..|+....+++..+|++..++++.|.++...++++.|+..|+++++..|.|-.+...+..+.-+......+
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999888886554444555
Q ss_pred HHHHHHHHHhcCC
Q psy12719 82 AIKLIEKAISIDK 94 (116)
Q Consensus 82 a~~~~~~~~~~~~ 94 (116)
..+.|.+.+...+
T Consensus 345 ekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 345 EKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccc
Confidence 6788888877643
No 142
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.14 E-value=1.3e-09 Score=63.05 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLG 104 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 104 (116)
.+..+.-+...|+|..|...|..-++..|++ +.++|.||.+++. +|+++.|...|..+++-.|++ |++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6788888999999999999999999999987 6789999999998 999999999999999987765 78999999
Q ss_pred HHHHhhcccccC
Q psy12719 105 TIEVQRTFVVLW 116 (116)
Q Consensus 105 ~~~~~~~~~~~a 116 (116)
.+...+|+.++|
T Consensus 223 ~~~~~l~~~d~A 234 (262)
T COG1729 223 VSLGRLGNTDEA 234 (262)
T ss_pred HHHHHhcCHHHH
Confidence 999999988764
No 143
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=99.10 E-value=3.5e-10 Score=48.64 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 69 (116)
.++..+|..+...|++++|+..|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555566666666666666666665555555554
No 144
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=4.9e-09 Score=66.56 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=88.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
|...|++++|+++++++|...|..++.++..|.++...|++.+|..+.+.+..+++.+--+-...+..+++ .|+.++|.
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~ 282 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAE 282 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHH
Confidence 45678899999999999999999999999999999999999999999999999998888777777777777 89999999
Q ss_pred HHHHHHHhcC--CCc-----HHHHH--HHHHHHHhhccccc
Q psy12719 84 KLIEKAISID--KSC-----MFAYE--TLGTIEVQRTFVVL 115 (116)
Q Consensus 84 ~~~~~~~~~~--~~~-----~~~~~--~l~~~~~~~~~~~~ 115 (116)
+.+......+ |.. ...|+ ..|.++...|++..
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8887776554 211 22343 56667777776543
No 145
>KOG1174|consensus
Probab=99.09 E-value=1.7e-09 Score=66.07 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=76.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHH----------------------------------HHHHHHHHHhhcChhhHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEA----------------------------------CTLFAQVLVDQEDFDGAEE 49 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~A~~ 49 (116)
+...|++.+|+..|+++.-.+|..... |+--+...+..+++..|..
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 345677777777777777777654321 2233334445566777777
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 50 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+-.++|+.+|++..++...|..+.. .++..+|+-.|+.+..+.|...+.|..|-.+|...|++.+|
T Consensus 322 ~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 322 FVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 7777777777777777777777666 77777777777777777777777777777777777776653
No 146
>KOG4648|consensus
Probab=99.09 E-value=3.3e-10 Score=67.83 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
....|+.|+++|.|++|+.+|.+++..+|.++..+.+++.+|++ .+.+..|...+..++.++.....+|...+.+...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999998 89999999999999999998888888888887777
Q ss_pred cccccC
Q psy12719 111 TFVVLW 116 (116)
Q Consensus 111 ~~~~~a 116 (116)
|...+|
T Consensus 179 g~~~EA 184 (536)
T KOG4648|consen 179 GNNMEA 184 (536)
T ss_pred hhHHHH
Confidence 766553
No 147
>KOG1127|consensus
Probab=99.08 E-value=5.7e-10 Score=73.95 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=82.9
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHH------------------------------------HHHHHHHHHhhcChhhHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEA------------------------------------CTLFAQVLVDQEDFDGAEEY 50 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~A~~~ 50 (116)
.-+...|..+|.++.+++|.+..+ |..+|..|...++...|+..
T Consensus 505 ~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 505 SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 345667777777777777665443 33455555566677777888
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 51 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
|+.+++.+|.+...|..+|.+|.. .|++.-|.+.|.++..++|.+..+.+..+.+....|.+.+
T Consensus 585 fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 585 FQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 888888888888888888888777 7888888888888888888888888888888888887765
No 148
>KOG2003|consensus
Probab=99.08 E-value=3e-09 Score=66.03 Aligned_cols=111 Identities=18% Similarity=0.099 Sum_probs=73.0
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC-----
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN----- 78 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----- 78 (116)
+..+|+.++|+++|-+.-.+-.++..++..++.+|....+...|++++.++..+-|+++.++..+|.+|-+ .|+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhh
Confidence 44567777777777776666666777777777777777777777777777777777777777666666443 444
Q ss_pred -----------------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 79 -----------------------------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 79 -----------------------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
.++++.+|+++--+.|+.......++.|+...|++.+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 4555555555555556555555556666666666554
No 149
>KOG0376|consensus
Probab=99.07 E-value=4.7e-10 Score=69.11 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=95.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...+.|+.|+..|.++++++|+++..+-..+..+.+.+++..|+..+.++++.+|....+|+..|.+... .+.+.+|..
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~ 93 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALL 93 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999777 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
.|+....+.|+++.+...+..|-.
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999988887777654
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.07 E-value=8.4e-09 Score=58.47 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHH
Q psy12719 27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAY 100 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 100 (116)
++..++..|...+..|++.+|+..|++++...|.+ +.+.+.+|.+++. .|+++.|+..+++.+...|++ +.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 35678899999999999999999999999998876 6689999999998 899999999999999999876 5678
Q ss_pred HHHHHHHHhhc
Q psy12719 101 ETLGTIEVQRT 111 (116)
Q Consensus 101 ~~l~~~~~~~~ 111 (116)
+.+|.++..+.
T Consensus 83 Y~~g~~~~~~~ 93 (203)
T PF13525_consen 83 YMLGLSYYKQI 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888876543
No 151
>KOG0495|consensus
Probab=99.06 E-value=4e-09 Score=67.72 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
++|+-.+.+...+++.++|+..++.+++..|.....|..+|.++.+ .++.+.|.+.|...+...|..+..|..++.+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555444 555555555555555555555555555555554
Q ss_pred hhcc
Q psy12719 109 QRTF 112 (116)
Q Consensus 109 ~~~~ 112 (116)
..|+
T Consensus 731 k~~~ 734 (913)
T KOG0495|consen 731 KDGQ 734 (913)
T ss_pred Hhcc
Confidence 4443
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.05 E-value=3.6e-09 Score=65.05 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=77.6
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..++-.+|++.+.+++...|.+...+...+..+...++++.|+.+.+++....|.+...|+.++.+|.. .|+++.|+-.
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALla 290 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLA 290 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999999888 9999999987
Q ss_pred HHHHH
Q psy12719 86 IEKAI 90 (116)
Q Consensus 86 ~~~~~ 90 (116)
+..+-
T Consensus 291 LNs~P 295 (395)
T PF09295_consen 291 LNSCP 295 (395)
T ss_pred HhcCc
Confidence 76443
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=1.3e-08 Score=59.17 Aligned_cols=83 Identities=10% Similarity=0.021 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHH
Q psy12719 27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAY 100 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 100 (116)
++..++..|......|++++|+..|++++...|.++.+ .+.+|.++++ .+++++|+..+++.++..|++ +.++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45667889999999999999999999999999998655 4899999998 899999999999999998876 5678
Q ss_pred HHHHHHHHhh
Q psy12719 101 ETLGTIEVQR 110 (116)
Q Consensus 101 ~~l~~~~~~~ 110 (116)
+.+|.++...
T Consensus 110 Y~~g~~~~~~ 119 (243)
T PRK10866 110 YMRGLTNMAL 119 (243)
T ss_pred HHHHHhhhhc
Confidence 8888775444
No 154
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.04 E-value=2.8e-08 Score=52.73 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE 101 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 101 (116)
+..++.-|...+..|+|.+|++.|+.+....|.. ..+.+.++.+++. .+++++|+..+++.++++|.+ +-+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 5578889999999999999999999999988866 5689999999999 899999999999999999987 45788
Q ss_pred HHHHHHHhhcc
Q psy12719 102 TLGTIEVQRTF 112 (116)
Q Consensus 102 ~l~~~~~~~~~ 112 (116)
..|.++..+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888777653
No 155
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=99.03 E-value=1.5e-09 Score=46.68 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 105 (116)
+.+++.+|..+.. .|++++|++.++++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999887 999999999999999999999999999875
No 156
>KOG4642|consensus
Probab=99.02 E-value=1e-09 Score=62.52 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=77.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
..-|+.++....|+.|+.+|.++|.++|..+..+.+.+.++++ .++++...+...+++++.|+....++.+|.+.....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 4457778888999999999999999999999999999999999 999999999999999999999999999999998888
Q ss_pred ccccC
Q psy12719 112 FVVLW 116 (116)
Q Consensus 112 ~~~~a 116 (116)
.+++|
T Consensus 93 ~~~ea 97 (284)
T KOG4642|consen 93 GYDEA 97 (284)
T ss_pred cccHH
Confidence 77654
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.01 E-value=3.2e-08 Score=54.82 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=89.3
Q ss_pred cchhcHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC--CCHHHHHHHHHHHHHhcCCHHH
Q psy12719 5 GDRERVEQSLKEFRNFVD-THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
.+.|++.+|...|++++. ...+++.....+++..+..+++..|...+++..+.+| .++.....+|..+.. .|.+.+
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~ 178 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYAD 178 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchh
Confidence 357889999999999875 3466788888999999999999999999999998887 457778888888666 899999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
|...|+.+++.-|+. .+....+..+..+|+.++
T Consensus 179 Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 179 AESAFEVAISYYPGP-QARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhH
Confidence 999999999988874 356667777777776554
No 158
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.00 E-value=2.1e-09 Score=66.34 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=54.2
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHhhcccccC
Q psy12719 57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---AYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 116 (116)
.+|+++.+++++|..++. .|++++|+..++++++++|++.. +|+++|.+|..+|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 468889999999999888 89999999999999999999985 499999999999998875
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=5.9e-09 Score=61.99 Aligned_cols=91 Identities=13% Similarity=0.238 Sum_probs=76.7
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH-HHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV-DEAIKLI 86 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 86 (116)
..+.+|...|++.....|.++..+.+++.++..+|++++|...+.+++..+|.++.++.+++.+... .|+. +.+.+.+
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence 4688999999998888888899999999999999999999999999999999999999999998776 7887 6677888
Q ss_pred HHHHhcCCCcHHH
Q psy12719 87 EKAISIDKSCMFA 99 (116)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (116)
.+....+|+.+.+
T Consensus 260 ~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 260 SQLKQSNPNHPLV 272 (290)
T ss_dssp HHCHHHTTTSHHH
T ss_pred HHHHHhCCCChHH
Confidence 8888889987644
No 160
>KOG1174|consensus
Probab=98.97 E-value=1.4e-08 Score=62.27 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=82.2
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
+..+++..|+.+-+++|..+|.+..++...|.++...++.++|+-.|+.++.+.|.....|-.+..+|+. .|++.+|.-
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kEA~~ 389 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKEANA 389 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHHHHH
Confidence 4668899999999999999999999999999999999999999999999999999998888888888777 677666666
Q ss_pred HHHHHHhcCCCcHHHHHHHH
Q psy12719 85 LIEKAISIDKSCMFAYETLG 104 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~ 104 (116)
....++...|.+...+..+|
T Consensus 390 ~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHHHhhcchhhhhhhc
Confidence 66666666555555444443
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=1.7e-08 Score=64.17 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
+++.++..|...|++++|+++++++|...|..+..++..|.++-. .|++.+|.+.++.+..+++.+..+-...+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 557889999999999999999999999999999999999999655 9999999999999999999998777788888888
Q ss_pred hcccccC
Q psy12719 110 RTFVVLW 116 (116)
Q Consensus 110 ~~~~~~a 116 (116)
.|+.++|
T Consensus 275 a~~~e~A 281 (517)
T PF12569_consen 275 AGRIEEA 281 (517)
T ss_pred CCCHHHH
Confidence 8877654
No 162
>KOG4555|consensus
Probab=98.96 E-value=3.7e-08 Score=51.57 Aligned_cols=86 Identities=27% Similarity=0.297 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGT 105 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~ 105 (116)
.+-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+-- +|+.++|...+.+++++.... -.++...|.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 445668888899999999999999999999999999999999555 899999999999999986543 245778899
Q ss_pred HHHhhcccccC
Q psy12719 106 IEVQRTFVVLW 116 (116)
Q Consensus 106 ~~~~~~~~~~a 116 (116)
+|..+|+-+.|
T Consensus 124 lyRl~g~dd~A 134 (175)
T KOG4555|consen 124 LYRLLGNDDAA 134 (175)
T ss_pred HHHHhCchHHH
Confidence 99998887653
No 163
>KOG0624|consensus
Probab=98.95 E-value=3.5e-08 Score=59.42 Aligned_cols=95 Identities=8% Similarity=0.170 Sum_probs=89.0
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...|+...+++.....++..|=++..+...+.+|...|+...|+..++.+-++..++...++.++.+++. .|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHhcCCCcHHH
Q psy12719 84 KLIEKAISIDKSCMFA 99 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (116)
...+++++++|+...+
T Consensus 244 ~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLC 259 (504)
T ss_pred HHHHHHHccCcchhhH
Confidence 9999999999987443
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.93 E-value=1.3e-09 Score=44.14 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=15.6
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhhcChhhH
Q psy12719 17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGA 47 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 47 (116)
|+++++.+|+++.+|.++|.++...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555555555555444
No 165
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.90 E-value=2.1e-09 Score=43.51 Aligned_cols=32 Identities=38% Similarity=0.698 Sum_probs=24.8
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 51 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
|+++|+++|+++.+|+++|.++.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 677788888888888888888766 78887775
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=3.9e-08 Score=65.75 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=84.1
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------------------CCCH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------------------PENA 62 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~~ 62 (116)
+|.++|++++|...|+++++.+|+++.+..++|..+... +.++|+.++.+++... |++.
T Consensus 125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence 566789999999999999999999999999999999988 9999999998886542 3332
Q ss_pred HH--------HHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 63 SL--------YVHRA------------MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 63 ~~--------~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
.. ...++ .+| ...+++++++..++.+++.+|++..+...++.+|.
T Consensus 204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y-~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 204 DFFLRIERKVLGHREFTRLVGLLEDLYEPY-KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHH-hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22 11122 443 33788999999999999999999888999999887
No 167
>KOG4234|consensus
Probab=98.86 E-value=3.6e-08 Score=55.23 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL 103 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 103 (116)
+-+..-|+-++..|+|.+|..-|..++...|..+ ..+.+.|.+..+ ++..+.|+....++++++|....++...
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3455678889999999999999999999998763 367889999888 8999999999999999999999999999
Q ss_pred HHHHHhhcccccC
Q psy12719 104 GTIEVQRTFVVLW 116 (116)
Q Consensus 104 ~~~~~~~~~~~~a 116 (116)
+.+|..+..+++|
T Consensus 175 Aeayek~ek~eea 187 (271)
T KOG4234|consen 175 AEAYEKMEKYEEA 187 (271)
T ss_pred HHHHHhhhhHHHH
Confidence 9999998877754
No 168
>KOG0545|consensus
Probab=98.85 E-value=9.9e-08 Score=55.00 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=79.8
Q ss_pred cchhcHHHHHHHHHHHHh--------hCCChhH----------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVD--------THSNVVE----------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 66 (116)
...|+|.+|...|..++. ..|.++. .+.+++.++...|+|-++++.....+..+|.+..+++
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~f 268 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYF 268 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 457888888888887763 3365543 5788999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (116)
.+|.++.. .-+..+|...+..+++++|.-.
T Consensus 269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHHHHh-hcCHHHHHHHHHHHHhcChhhH
Confidence 99999877 7999999999999999999764
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.85 E-value=4.7e-08 Score=64.52 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=77.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
...|..++|.++|+.+.+..+- +...+..+...+.+.|++++|.+.+++.- ..| +...|..+...+.. .|+.+.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-HKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-cCCcHHH
Confidence 3456666666666666543221 23356667777777777777777776532 223 34557777666555 7999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
...+++.+...|++...+..+..+|...|++++|
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999998888899999999999988764
No 170
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.83 E-value=4.6e-09 Score=50.60 Aligned_cols=55 Identities=15% Similarity=0.357 Sum_probs=45.8
Q ss_pred cccchhcHHHHHHHHHHHHhhC---C-C---hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTH---S-N---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
++..+|++++|+++|++++... + + ...++.++|.++...|++++|++++++++++
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567899999999999999663 2 2 2557899999999999999999999999875
No 171
>PLN03077 Protein ECB2; Provisional
Probab=98.82 E-value=1.5e-07 Score=63.52 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=82.6
Q ss_pred ccchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
+...|..++|.++|+.+.+..+- +...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+-..+.. .++.+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~ 675 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVEL 675 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHH
Confidence 34567788888888887744322 2456777888888888888888888775 24444 4556655555444 788888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+....++++++.|++...+..++.+|...|++++|
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 88888999999999999999999999999998864
No 172
>KOG4340|consensus
Probab=98.82 E-value=2.1e-07 Score=55.25 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+....+.|.+.++ .|+++.|++-|+.+++...-.+-+-++++.++.+.|+++.|
T Consensus 144 Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasA 197 (459)
T KOG4340|consen 144 ADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASA 197 (459)
T ss_pred cchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHH
Confidence 3345556666565 78899999999999998888888888999998888887653
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.81 E-value=1e-08 Score=41.47 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555543
No 174
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.80 E-value=1.8e-08 Score=40.65 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
.++..+|.++...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.79 E-value=1.9e-07 Score=55.46 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=85.4
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh-hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
+.+..+.|...|.++.+..+.+..+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.. .++.+.+..
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~ 91 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARA 91 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHH
Confidence 44568899999999987666778899999999666 6777779999999999999999999999888777 899999999
Q ss_pred HHHHHHhcCCCcH---HHHHHHHHHHHhhcccc
Q psy12719 85 LIEKAISIDKSCM---FAYETLGTIEVQRTFVV 114 (116)
Q Consensus 85 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 114 (116)
.|++++..-|... .+|..........|+.+
T Consensus 92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 9999998877654 57777777777777653
No 176
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.79 E-value=2.5e-07 Score=56.26 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=74.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.+.|+.++|.++.+.+++..-+.. ....++ ...-++...=++..++.++..|+++..++.+|..+++ .+.+.+|.+
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~ 349 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASE 349 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHH
Confidence 355777788888777777654432 222222 2356677777777777788888888888888888777 788888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
.++.+++..|+.. .+..+|.++.++|+..+
T Consensus 350 ~leaAl~~~~s~~-~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 350 ALEAALKLRPSAS-DYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHhcCCChh-hHHHHHHHHHHcCChHH
Confidence 8888887777643 46777888777777654
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.78 E-value=9.8e-08 Score=56.75 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=76.4
Q ss_pred hhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhh-cChhhHHHHHHHHhccCCCC------HHHHHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLML 73 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~ 73 (116)
..++++|++++++++...-. -..++..+|.++... |++++|+++|++++...... ..++..+|.++.
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 34788999999999876421 145788899999988 99999999999998764322 346778888877
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhhcccc
Q psy12719 74 QARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 114 (116)
. .|+|++|++.|++......+. ...+...+.++...||+.
T Consensus 167 ~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 167 R-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp H-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred H-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 7 899999999999998753321 234456666777777653
No 178
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.78 E-value=4.4e-07 Score=62.35 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhcccc
Q psy12719 100 YETLGTIEVQRTFVV 114 (116)
Q Consensus 100 ~~~l~~~~~~~~~~~ 114 (116)
|..+...+.+.|+++
T Consensus 722 yN~LI~gy~k~G~~e 736 (1060)
T PLN03218 722 MNALITALCEGNQLP 736 (1060)
T ss_pred HHHHHHHHHHCCCHH
Confidence 444444444444433
No 179
>KOG1915|consensus
Probab=98.76 E-value=4.2e-07 Score=56.97 Aligned_cols=105 Identities=12% Similarity=0.239 Sum_probs=91.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.+++++..|...|++++..+..+...|..++.+-++.+....|..++++++.+-|.....|+....+--. +|+...|.+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hcccHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999988555 899999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
.|++.++..|+.. +|..........+
T Consensus 163 iferW~~w~P~eq-aW~sfI~fElRyk 188 (677)
T KOG1915|consen 163 IFERWMEWEPDEQ-AWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHcCCCcHH-HHHHHHHHHHHhh
Confidence 9999999999853 5555555444433
No 180
>KOG3081|consensus
Probab=98.76 E-value=6.3e-07 Score=52.18 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=78.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHH----hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV----DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
++.+++-|...++++...+.+. ....+|..+. ..+.+++|.-.|+......|..+......+.++.. ++++++
T Consensus 149 k~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~ee 225 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHH
Confidence 3445555666666665554332 3344555444 35568888888988888788888888899999888 899999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
|...++.++..++++++.+.++..+-...|..
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988887777765
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.75 E-value=4.7e-08 Score=39.46 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
+.+|+++|.++.. +|++++|+..++++++++|++
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 4679999999888 999999999999999999974
No 182
>KOG2376|consensus
Probab=98.75 E-value=2.2e-07 Score=59.16 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=80.2
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+...++|++|++...+.+...|++.++......+....++|++|....+.-.... ......+..+.|.|+ ++..++|.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yr-lnk~Deal 99 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYR-LNKLDEAL 99 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHH-cccHHHHH
Confidence 4567899999999999999999999888888888888999998884443221111 112223678888887 88888888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
..+. ..++.+..+....|.+++.+|++++|
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHH
Confidence 8887 44555566777788888888887764
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.74 E-value=1.8e-06 Score=50.06 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=74.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHhc--
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQAR-- 76 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~-- 76 (116)
.+.|+|++|+..|+......|.+ ..+...++.++++.++++.|+...++-++..|.++ -+++..|.+++...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 46789999999999999998876 46888999999999999999999999999988774 46777787766521
Q ss_pred -----CCHHHHHHHHHHHHhcCCCc
Q psy12719 77 -----GNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 77 -----~~~~~a~~~~~~~~~~~~~~ 96 (116)
.-...|...++..+...|++
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCC
Confidence 22557777788888888876
No 184
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.74 E-value=1.5e-06 Score=52.98 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=95.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-CHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
...|+|.+|+....+.-+..+.....+..-+.....+|+++.+-.++.++-+..++ .......++..... .|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHH
Confidence 34689999999999988777776777777788889999999999999999998554 45667788888787 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
..+.+++...|..+.+......+|...|++.+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999998754
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=4.3e-08 Score=55.60 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
+..++..|..|-..|-+.-|+..|.+++.+.|+-+.++..+|..+.. .|+++.|.+.|...++++|...-+..+.|...
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 56788899999999999999999999999999999999999998777 89999999999999999999988888888877
Q ss_pred Hhhcccc
Q psy12719 108 VQRTFVV 114 (116)
Q Consensus 108 ~~~~~~~ 114 (116)
.--|++.
T Consensus 144 YY~gR~~ 150 (297)
T COG4785 144 YYGGRYK 150 (297)
T ss_pred eecCchH
Confidence 7666664
No 186
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.72 E-value=9.4e-07 Score=60.79 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhhccc
Q psy12719 76 RGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 113 (116)
.|++++|.+.++...+.+ +.++..|..+...+.+.|++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 344444444444444332 22233344444444444443
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.68 E-value=1.2e-07 Score=38.17 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
+.+++.+|.+++. .|++++|++.++++++++|++
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999888 999999999999999999974
No 188
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.67 E-value=4.4e-07 Score=60.08 Aligned_cols=106 Identities=8% Similarity=-0.062 Sum_probs=50.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|...|++..... ..+..++..+...+.+ .|++++|
T Consensus 269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~~~a 344 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALLEHA 344 (697)
T ss_pred HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccchHHH
Confidence 334556666666665542 2344556666666666666666666666554432 1122334444444333 4555555
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHhhccc
Q psy12719 83 IKLIEKAISID-KSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 113 (116)
.+.+..+++.. +.+..++..+...|.+.|++
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 55544444432 22233344444444444443
No 189
>KOG3785|consensus
Probab=98.65 E-value=3.4e-07 Score=55.59 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=70.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------------------------
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------------------------- 58 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 58 (116)
+...|+|++|...|+-+...+..+++.+.+++.+++-.|.|.+|...-.++-+..
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4567888888888888777665566777777777777777777766655442211
Q ss_pred -CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719 59 -PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (116)
.+...-...++.+++. .-.|.+|+..+.+.+..+|+....-..++.||.++.-
T Consensus 147 LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 0011122344445454 4667888888888888888777666777777766543
No 190
>KOG2610|consensus
Probab=98.65 E-value=1.2e-06 Score=52.93 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=92.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CCCCHH---HHHHHHHHHHHhcCCHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPENAS---LYVHRAMLMLQARGNVD 80 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 80 (116)
...|++.+|...+++.++..|.+..++..--..++.+|+.......+++.+.. +|+.|- +.-.++..+.. .|-|+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccch
Confidence 45678889999999999999999998888888999999999999999999987 666643 33345555445 89999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
+|++...++++++|.+.-+....+.++...|++.+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 99999999999999998888888888888777765
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.63 E-value=3.6e-06 Score=46.97 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR-VDPENASLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
+.+.......+.++..|... -...+|+.....|++.+|...|++++. +.-.++..+..++...+. .+++..|...++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe 148 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLE 148 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 34444555555566666643 467899999999999999999999987 455778889999999888 899999999999
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHhhcccccC
Q psy12719 88 KAISIDKS--CMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 88 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 116 (116)
...+.+|. +|.....+++++..+|++.+|
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 99999885 477788899999998887643
No 192
>KOG0551|consensus
Probab=98.62 E-value=5.7e-07 Score=53.89 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=48.8
Q ss_pred chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
+.++|..|+..|.+.++..-.+ ...|.+.+-+....|+|..++..+.+++..+|.+..+++.-+.|++. +..+.+
T Consensus 93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le~~~~ 171 (390)
T KOG0551|consen 93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LERFAE 171 (390)
T ss_pred HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HHHHHH
Confidence 3445566666666666554332 22455555555566666666666666666666666666666666555 566555
Q ss_pred HHHHHHHHHhc
Q psy12719 82 AIKLIEKAISI 92 (116)
Q Consensus 82 a~~~~~~~~~~ 92 (116)
|..+++..+..
T Consensus 172 a~nw~ee~~~~ 182 (390)
T KOG0551|consen 172 AVNWCEEGLQI 182 (390)
T ss_pred HHHHHhhhhhh
Confidence 55555555443
No 193
>KOG1070|consensus
Probab=98.62 E-value=8.2e-07 Score=61.50 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=98.2
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhcCCHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (116)
+|...+.+++|.++++..++.+.....+|..+|..++++++-++|...+.+|++.-|. +.......+.+.++ .|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCch
Confidence 3556778999999999999999888899999999999999999999999999999987 67778888888888 89999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
++...|+-.+...|...++|..+......+|+.+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence 9999999999999999999999888887776543
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.62 E-value=2.4e-06 Score=54.26 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=87.1
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~a 82 (116)
..+.+.+.+.+.......|++.-..+..|.++...|+.++|++.+++++.....- .-.++.++.++.. +.++++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 4567889999999999999999999999999999999999999999988543322 2358899999887 8999999
Q ss_pred HHHHHHHHhcCCCcH-HHHHHHHHHHHhhccc
Q psy12719 83 IKLIEKAISIDKSCM-FAYETLGTIEVQRTFV 113 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 113 (116)
...+.+..+.+.-+. ...+..|.++...++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999998766544 3445666677777765
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.61 E-value=1.1e-06 Score=52.34 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=69.9
Q ss_pred ccch-hcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHH
Q psy12719 4 PGDR-ERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRA 69 (116)
Q Consensus 4 ~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~ 69 (116)
+... |++++|++.|++++...... ..++..+|.++...|+|++|+..|++......++ ...++..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4555 89999999999999875322 4577889999999999999999999987653221 13456778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 70 MLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
.|++. .|++..|...+++....+|+.
T Consensus 204 l~~L~-~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 204 LCHLA-MGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHH-TT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence 88777 899999999999999998854
No 196
>KOG2053|consensus
Probab=98.61 E-value=3.5e-06 Score=56.11 Aligned_cols=107 Identities=19% Similarity=0.105 Sum_probs=88.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
.+.+++.+|.....+.++..|+..-+...-|.++.+.|+.++|..+++..-...+++...+-.+-.+|-. +++++++..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHH
Confidence 3568899999999999999999988888899999999999999988887777777888888888888555 999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 85 LIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
.|++++..+|+ .+....+=.+|.+.+.+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999 55555444455444433
No 197
>KOG1308|consensus
Probab=98.60 E-value=1.6e-08 Score=60.35 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=82.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
....|.+++|++.|..++.++|.....+...+.++...++...|+..+..++.++|++..-+-..+..+-. +|++++|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999888888888555 89999999
Q ss_pred HHHHHHHhcCCC
Q psy12719 84 KLIEKAISIDKS 95 (116)
Q Consensus 84 ~~~~~~~~~~~~ 95 (116)
..+..+.+++-+
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 999999887543
No 198
>KOG0551|consensus
Probab=98.58 E-value=9.2e-07 Score=53.02 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL 103 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 103 (116)
+.-+..-|+-|++.++|..|+..|...|+..-.+ ...|.+++-+.+. .|+|..++....+++..+|.+..+++.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4466778999999999999999999999875443 5578999999888 8999999999999999999999999999
Q ss_pred HHHHHhhccccc
Q psy12719 104 GTIEVQRTFVVL 115 (116)
Q Consensus 104 ~~~~~~~~~~~~ 115 (116)
+.|+..+.++++
T Consensus 160 Akc~~eLe~~~~ 171 (390)
T KOG0551|consen 160 AKCLLELERFAE 171 (390)
T ss_pred hHHHHHHHHHHH
Confidence 999998888654
No 199
>PLN03077 Protein ECB2; Provisional
Probab=98.56 E-value=1.2e-06 Score=59.37 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=59.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
|.+.|+.++|...|... +.+...|..+...|...|+.++|+..|++..+. .|+.......+ ..+.+ .|..++
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~-~g~v~e 607 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSR-SGMVTQ 607 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhh-cChHHH
Confidence 34456666666666654 344556666666667777777777777666553 34433322222 23234 566666
Q ss_pred HHHHHHHHHhcCC--CcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDK--SCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|.+.|....+..+ -+...+..+..++.+.|++++|
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 6666666653321 1234556666666666665543
No 200
>KOG2396|consensus
Probab=98.55 E-value=8.6e-06 Score=51.40 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 90 (116)
.+-...|..+....+.+...|........+.+.+.+....|.+++..+|+++..|..-+.-.+...-+.+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34467889999999999999999988888888899999999999999999999999999988875556999999999999
Q ss_pred hcCCCcHHHHHHHHH
Q psy12719 91 SIDKSCMFAYETLGT 105 (116)
Q Consensus 91 ~~~~~~~~~~~~l~~ 105 (116)
..+|+++..|...=.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999999988775433
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.55 E-value=1e-06 Score=48.54 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=50.0
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC-----------hhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-----------FDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
.-+++|+.-|++++.++|+..+++..+|+++...+. |++|..+|+++...+|.+......+..+
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 457899999999999999999999999999986543 7889999999999999997765555443
No 202
>KOG2471|consensus
Probab=98.53 E-value=2.9e-07 Score=57.81 Aligned_cols=103 Identities=11% Similarity=0.121 Sum_probs=83.0
Q ss_pred chhcHHHHHHHHHHH-HhhCCC--------hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc---------CC--------
Q psy12719 6 DRERVEQSLKEFRNF-VDTHSN--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---------DP-------- 59 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------~~-------- 59 (116)
-.|++.+|.+.+... +...|. ...+|.++|.++++.+.|.-+..+|.++++. .|
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 457888888777654 223333 2346789999999999999999999999851 11
Q ss_pred -CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 60 -ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
.+..+.|+.|..++. .|++-.|.++|.+++.....+|..|..++.+...
T Consensus 332 nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 332 NKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 235689999999888 8999999999999999999999999999998764
No 203
>KOG3081|consensus
Probab=98.50 E-value=8.3e-06 Score=47.71 Aligned_cols=91 Identities=11% Similarity=0.154 Sum_probs=77.2
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV-DEAIKL 85 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 85 (116)
.+.+.+|.-+|++.-...|..+....+.+.++..+++|++|...++.++..++..+.++.++..+... .|.. +-..+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence 35688999999999887888899999999999999999999999999999999999999999888666 6655 445566
Q ss_pred HHHHHhcCCCcHH
Q psy12719 86 IEKAISIDKSCMF 98 (116)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (116)
+.+....+|+.+.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 6777777887753
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.48 E-value=2.7e-06 Score=50.67 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
-+|..+.....+.+..+.|+.+|.++.+..+....+|...|.+.+...++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36778888888888999999999999977777889999999997774567777999999999999999999999988888
Q ss_pred hhccccc
Q psy12719 109 QRTFVVL 115 (116)
Q Consensus 109 ~~~~~~~ 115 (116)
..++.+.
T Consensus 82 ~~~d~~~ 88 (280)
T PF05843_consen 82 KLNDINN 88 (280)
T ss_dssp HTT-HHH
T ss_pred HhCcHHH
Confidence 8887654
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.48 E-value=1.2e-05 Score=45.29 Aligned_cols=102 Identities=20% Similarity=0.365 Sum_probs=55.8
Q ss_pred chhcHHHHHHHHHHHHhhCC---ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-CHHHHHHHHHHHHHhcCCHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (116)
..++++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..++..+.. .+.++.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 220 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEE 220 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHH
Confidence 45556666666666655444 22334444444455556666666666666666665 45556666665444 556666
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+...+..++...|.....+..++..+.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 666666666665554334444444433
No 206
>KOG3785|consensus
Probab=98.48 E-value=3e-06 Score=51.69 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=69.3
Q ss_pred chhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...+|..|+..++-....+.+. ..+-..+|.+++..|+|++|...|.-+...+..+...+.+++.+.+. +|.|.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHH
Confidence 4567888999888887665443 35667889999999999999999999988777788899999999988 899999987
Q ss_pred HHHHH
Q psy12719 85 LIEKA 89 (116)
Q Consensus 85 ~~~~~ 89 (116)
...++
T Consensus 113 ~~~ka 117 (557)
T KOG3785|consen 113 IAEKA 117 (557)
T ss_pred HHhhC
Confidence 66554
No 207
>KOG1915|consensus
Probab=98.47 E-value=1.1e-05 Score=50.88 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=86.7
Q ss_pred chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
...+.+.+.+.|+.++++-|.. +..|...|....++.+...|...+-.+|-..|.+-...- ...+-++ +++++.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~-YIelElq-L~efDR 455 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG-YIELELQ-LREFDR 455 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH-HHHHHHH-HhhHHH
Confidence 3467788889999999988865 668888888888999999999999999988887643322 2223345 788999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
....|++.++.+|.+-.+|...|.....+|+.+.|
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999888899888888888887653
No 208
>KOG2796|consensus
Probab=98.46 E-value=3.5e-06 Score=49.38 Aligned_cols=91 Identities=21% Similarity=0.321 Sum_probs=70.9
Q ss_pred cchhcHHHHHHHHHHHHhhC------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC
Q psy12719 5 GDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
++.||-..|..+|+..-+.. .....+..+.+.++...+++.+|...+.+++..+|.++.+..+.+.|++. .|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHH
Confidence 45677777777777444332 12234667777788888888888888888889999999999999998888 899
Q ss_pred HHHHHHHHHHHHhcCCCc
Q psy12719 79 VDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~ 96 (116)
..+|++.++.+++..|..
T Consensus 302 l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 999999999999888864
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.46 E-value=1.5e-05 Score=42.88 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=65.5
Q ss_pred hhcHHHHHHHHHHHHhhCCCh----------------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNV----------------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 64 (116)
.++...+++.+.+++....+. ..+...++..+...|++++|+..+++++..+|.+..+
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~ 98 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEA 98 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Confidence 457788888888888776221 1134556777788999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 65 YVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
+..+-.++.. .|+...|.+.|.+....
T Consensus 99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 99 YRLLMRALAA-QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 9999999888 89999999999888653
No 210
>KOG2376|consensus
Probab=98.45 E-value=6.5e-06 Score=52.78 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=78.8
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------------------------
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------------------------- 58 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 58 (116)
..+.+..++|+..++ -.++.+....-..|.++++.++|++|...|+..++.+
T Consensus 89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345667777777776 3444555577788999999999999999999876544
Q ss_pred -----CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCc-------HHHHHHHHHHHHhhcccccC
Q psy12719 59 -----PE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSC-------MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 59 -----~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~-------~~~~~~l~~~~~~~~~~~~a 116 (116)
|. +-...|+.+..+.. .|+|.+|++.++.++.. +.+. ..+...++.++..+|+.++|
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 21 34467888988777 89999999999999443 1111 23566788888888887664
No 211
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.45 E-value=4.1e-07 Score=36.59 Aligned_cols=30 Identities=23% Similarity=0.555 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 59 (116)
+|..+|.++...|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 212
>KOG4507|consensus
Probab=98.44 E-value=4.9e-06 Score=53.65 Aligned_cols=103 Identities=10% Similarity=0.133 Sum_probs=90.6
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
.-.|+...|+.++..++...|...+ ...+++++....+-.-+|...+.+++.++...+-.++.+|.+++. +++.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHH
Confidence 4578899999999999999987754 467899999999999999999999999998888899999999888 99999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+.++.+++.+|+++.+...|-.+..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999887776655544
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.1e-06 Score=48.86 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=75.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH------------------------------
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS------------------------------ 54 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------------------ 54 (116)
...|++.+|...|..++...|++.++...++.++...|+.+.|...+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45789999999999999999999999999999999999998887666542
Q ss_pred ----hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhc
Q psy12719 55 ----IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRT 111 (116)
Q Consensus 55 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 111 (116)
+..+|++..+.+.++..+.. .|+.+.|.+.+-..+..+.+ +..+...+-.++...|
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 12236666666666666555 66677666666666655432 2444555555554444
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.40 E-value=2.9e-06 Score=53.42 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=67.2
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC---------------------C---
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---------------------N--- 61 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------~--- 61 (116)
+..+...-++...++++.+|++++++..++.- ......++.++++++++.... +
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 34556667777788888888888877777652 223345555555555432200 0
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhccccc
Q psy12719 62 -ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 62 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 115 (116)
..+...++.|..+ .|+.++|++.++..++.+|. ...+..+|..++...+.+.+
T Consensus 258 ~~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 258 LVYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred hhhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence 2244567777555 78888888888888777664 35567777777777666654
No 215
>KOG2796|consensus
Probab=98.39 E-value=5.1e-06 Score=48.75 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=90.5
Q ss_pred cchhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhc----cC--CCCHHHHHHHHHHHHHhcC
Q psy12719 5 GDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR----VD--PENASLYVHRAMLMLQARG 77 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~--~~~~~~~~~~~~~~~~~~~ 77 (116)
...++|.-+.+.+.+.++.+ |..+.....+|.+.++-|+.+.|..+|++.-+ ++ .....+..+.+.+++- .+
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~n 266 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QN 266 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-cc
Confidence 34678889999999999988 55677888999999999999999999985432 22 2334567778888777 89
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 78 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
++..|...+.+++..+|.++.+-.+-+.|....|+...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~D 304 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKD 304 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877654
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.37 E-value=4.2e-05 Score=43.02 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=65.4
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHH-HHHhhcChhhHHHHHHHHhccCC---CCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQ-VLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
.+++..++..+..++...+.........+. ++...++++.|...+.+++...| .........+..+.. .++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 186 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEA 186 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHH
Confidence 344566677777777666655444444444 66777777777777777766555 234444445544344 5777777
Q ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHhhc
Q psy12719 83 IKLIEKAISIDKS-CMFAYETLGTIEVQRT 111 (116)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 111 (116)
...+.+++...+. ....+..++..+...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 7777777777777 4666666666666554
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.36 E-value=3.5e-05 Score=44.89 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHH
Q psy12719 27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM---FAY 100 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 100 (116)
.+..++.-|....+.|++++|...|+.+....|.+ ..+...++.++++ .+++++|+..+++.+...|+++ -++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35678899999999999999999999999998876 5688999999998 8999999999999999998774 345
Q ss_pred HHHHHHH
Q psy12719 101 ETLGTIE 107 (116)
Q Consensus 101 ~~l~~~~ 107 (116)
+..|.++
T Consensus 112 YlkgLs~ 118 (254)
T COG4105 112 YLKGLSY 118 (254)
T ss_pred HHHHHHH
Confidence 5555553
No 218
>PRK10941 hypothetical protein; Provisional
Probab=98.36 E-value=2.9e-05 Score=45.98 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
...++-.++.+.++++.|..+.+..+...|+++.-+..+|.++.+ +|.+..|...++..++..|+++.+-.....+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456677788899999999999999999999999999999999887 99999999999999999999987655544443
No 219
>KOG1130|consensus
Probab=98.35 E-value=1.4e-06 Score=53.92 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=76.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhcc----CCCC--HHHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPEN--ASLYVHRAML 71 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~--~~~~~~~~~~ 71 (116)
|.-.|+|+.|+...+.-+.+.... -+++.++|+++.-.|+++.|+++|...+.+ .... +..-|.+|..
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 445678888888777766554222 347778888888888888888888776543 2222 3446778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhhcccccC
Q psy12719 72 MLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a 116 (116)
|.- ..++.+|+.+..+-+.+.. ....+.+.||..+...|..++|
T Consensus 285 ytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 285 YTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 666 7888888888877665522 3356677788877777765543
No 220
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=2.1e-05 Score=53.66 Aligned_cols=111 Identities=9% Similarity=0.034 Sum_probs=83.6
Q ss_pred cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLML 73 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~ 73 (116)
...|++++|...+++++...|... .+...+|.++...|++++|...+.+++...... ..++..+|.+++
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 457899999999999988554432 355678888899999999999999998654321 235677888877
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHhhcccccC
Q psy12719 74 QARGNVDEAIKLIEKAISIDKS--------CMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a 116 (116)
. .|++++|...+.+++..... ....+..++.++...|++++|
T Consensus 543 ~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 543 A-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred H-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7 89999999999998875221 123455778888888887754
No 221
>KOG1130|consensus
Probab=98.32 E-value=3.8e-07 Score=56.33 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhc
Q psy12719 9 RVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQAR 76 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~ 76 (116)
.++.|+++|..-+++.... .+++.++|+.|+-.|+|+.|+..-+.-+.+.... ..++.++|.++.. +
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-l 248 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-L 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-h
Confidence 4667777777766655333 3478889999999999999999887766665433 3578999999888 8
Q ss_pred CCHHHHHHHHHHHHhc----CCCc--HHHHHHHHHHHHhhccccc
Q psy12719 77 GNVDEAIKLIEKAISI----DKSC--MFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 77 ~~~~~a~~~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~ 115 (116)
|+++.|++.|+..+.+ .... ...-+.||..|....++.+
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999887755 2222 3445677777777666654
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.31 E-value=1.8e-06 Score=34.30 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555544
No 223
>KOG1941|consensus
Probab=98.31 E-value=5.8e-06 Score=50.52 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=85.4
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccCC----CC------HHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDP----EN------ASLYVH 67 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~------~~~~~~ 67 (116)
+..++.++++++.|+.+++...++. .++..+|.++-...++++|..+..++..+-. ++ ..+.+.
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 4456789999999999998765443 4788899999999999999999888876532 22 235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhhccccc
Q psy12719 68 RAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
++..+-. +|+...|.++.+++.++. +-.......+|.+|...|+.+.
T Consensus 212 maValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 212 MAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 8888544 899999999999987762 2235667788999998888764
No 224
>KOG0376|consensus
Probab=98.28 E-value=3.2e-07 Score=57.08 Aligned_cols=83 Identities=24% Similarity=0.279 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
..-+...+.-++++.|+..|.++|+++|+++..+-+++..+++ .+++..|+..+.++++.+|....++...|.+....+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556777888999999999999999999999999999999888 899999999999999999999888888887777776
Q ss_pred cccc
Q psy12719 112 FVVL 115 (116)
Q Consensus 112 ~~~~ 115 (116)
.+.+
T Consensus 87 ~~~~ 90 (476)
T KOG0376|consen 87 EFKK 90 (476)
T ss_pred HHHH
Confidence 6554
No 225
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=98.28 E-value=8.9e-05 Score=40.42 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=62.0
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
..++.+++...+...--+.|+.+..-..-|.++..+|+|.+|+..++.+....|..+.+--.++.|++. +++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~ 95 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS 95 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence 345777888888888788899988888889999999999999999999888888888888888888666 77765
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.27 E-value=3.2e-06 Score=33.91 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (116)
.+|+.+|.++.. +|++++|.+.++++++.+|+
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 578999999887 99999999999999999884
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.17 E-value=5.9e-06 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
.+++.+|.++.. .|++++|++.+++++...|++
T Consensus 1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 367899999888 899999999999999999974
No 228
>KOG1308|consensus
Probab=98.17 E-value=3.3e-07 Score=54.99 Aligned_cols=81 Identities=27% Similarity=0.292 Sum_probs=72.2
Q ss_pred HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
+.-....|.++.|++.|..+|.++|.+...+..++.++++ ++....|+..+..++.++|+...-+...+.+...+|+++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 3445578999999999999999999999999999999888 999999999999999999999888888888888888876
Q ss_pred cC
Q psy12719 115 LW 116 (116)
Q Consensus 115 ~a 116 (116)
+|
T Consensus 200 ~a 201 (377)
T KOG1308|consen 200 EA 201 (377)
T ss_pred HH
Confidence 54
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.16 E-value=4.2e-06 Score=34.16 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
+..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.15 E-value=0.00017 Score=38.76 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHhhcChhhHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVDPEN----------------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
|......++...++..+.+++.+.... ..+...++..+.. .|++++|+..+.+++..
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhc
Confidence 444455667777888888877654111 1244556666566 89999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 93 DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+|.+..++..+..++...|+..+|
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999987653
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.13 E-value=0.00016 Score=44.71 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred ccccchhcHHHHHHHHHHHHhh----CCChhHHHHHHHHHHHh---hcChhhHHHHHHH-HhccCCCCHHHHHHHHHHHH
Q psy12719 2 IVPGDRERVEQSLKEFRNFVDT----HSNVVEACTLFAQVLVD---QEDFDGAEEYFNR-SIRVDPENASLYVHRAMLML 73 (116)
Q Consensus 2 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~ 73 (116)
+.|.+..+|+.-+...+..-.. -++...+...+|.++.+ .|+.++|+..+.. .....+.++..+...|.+|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 4577888999998888887666 35567788889999988 9999999999998 55566788889999998864
Q ss_pred Hh--------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 74 QA--------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 74 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
.. ....++|+..|.++.+.+|+.- .-.+++.++...|
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g 273 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG 273 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence 31 2358899999999999987542 2344444444444
No 232
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.00016 Score=49.50 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=81.4
Q ss_pred chhcHHHHHHHHHHHHhhCCC---------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSN---------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAML 71 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~ 71 (116)
..++++++...+..+....+. .......++.++...|++++|...+++++...|... .+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 457889999888887654322 123445678888899999999999999988554432 345678888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719 72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a 116 (116)
+.. .|++++|...+.+++...... ..++..++.++...|++++|
T Consensus 501 ~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A 550 (903)
T PRK04841 501 HHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA 550 (903)
T ss_pred HHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 766 899999999999998763321 34567788899989987754
No 233
>KOG3824|consensus
Probab=98.11 E-value=3.2e-05 Score=46.55 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 105 (116)
.+.-..+.|+.++|...|+.++.++|+++.++..+|...-. .++..+|-.+|-+++..+|.+.+++.+.++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33344466777777777777777777777777777776444 566677777777777777766665555443
No 234
>KOG1585|consensus
Probab=98.11 E-value=9e-05 Score=43.20 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=77.7
Q ss_pred cccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccC-----CCCHH-HHHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----PENAS-LYVHRAM 70 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~-~~~~~~~ 70 (116)
.|...++|++|...+.++++-...+ ...+-..+.+......+.++..+++++.... |+... ++-.-|.
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 3456678899999998888554333 3355666677778889999999999998764 44433 3444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719 71 LMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a 116 (116)
+ +. ..++++|++.|++++.+...+ .+.+-..++++.....+++|
T Consensus 120 ~-le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 120 A-LE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred H-hh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 4 66 789999999999998874432 34455666677776666553
No 235
>KOG3824|consensus
Probab=98.10 E-value=1.3e-05 Score=48.13 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=61.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
...|+.++|...|+.++++.|.+++++..+|......++.-+|-.+|-+++.++|.+..++.+....
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4578999999999999999999999999999999889999999999999999999998888776543
No 236
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.08 E-value=8.1e-05 Score=33.09 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12719 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 100 (116)
++.++..+++ .|+|++|.+..+.+++..|++..+.
T Consensus 4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444444444 4555555555555555555544433
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=98.07 E-value=0.00019 Score=35.61 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719 13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (116)
.+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3566788888999999999999999999999999999999999888765
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.06 E-value=4.6e-05 Score=33.87 Aligned_cols=43 Identities=12% Similarity=0.299 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
+..+.+|..+.+.|+|++|..+.+.++++.|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567889999999999999999999999999998876655444
No 239
>KOG1070|consensus
Probab=98.06 E-value=0.00021 Score=50.48 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTI 106 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 106 (116)
.++..+..+|...+.+++|.++++..++...+....|...+..+++ .++-+.|...+.+|++.-|. +.......+.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3566677788888899999999999998888888999999999877 78889999999999999887 57777888888
Q ss_pred HHhhccccc
Q psy12719 107 EVQRTFVVL 115 (116)
Q Consensus 107 ~~~~~~~~~ 115 (116)
.++.|+.+.
T Consensus 1610 EFk~GDaeR 1618 (1710)
T KOG1070|consen 1610 EFKYGDAER 1618 (1710)
T ss_pred HhhcCCchh
Confidence 888888764
No 240
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=98.04 E-value=1.6e-05 Score=30.73 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
++..+|.++...+++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666655553
No 241
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=0.00026 Score=39.83 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=66.9
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (116)
.+.+++++|+..++.++....+. +.+-.+++.+...+|.+++|...+......+ -.+..-...|.++.. .|+-++
T Consensus 100 ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~ 177 (207)
T COG2976 100 VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE 177 (207)
T ss_pred HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence 45688899999999888655443 3466788999999999999998887533221 112335567999877 899999
Q ss_pred HHHHHHHHHhcCCCc
Q psy12719 82 AIKLIEKAISIDKSC 96 (116)
Q Consensus 82 a~~~~~~~~~~~~~~ 96 (116)
|...|.+++..+++.
T Consensus 178 Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 178 ARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHccCCh
Confidence 999999999987554
No 242
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.00 E-value=2.8e-05 Score=46.74 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=73.5
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
|.++-...|+++..|...+......+.+.+....|.+++..+|.++..|..-+..-+...++.+.+...+.+++..+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 33444556888899999988888899999999999999999999999998755544555799999999999999999999
Q ss_pred HHHHHHHHH
Q psy12719 97 MFAYETLGT 105 (116)
Q Consensus 97 ~~~~~~l~~ 105 (116)
|..|...-+
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 888775433
No 243
>KOG0545|consensus
Probab=98.00 E-value=7.9e-05 Score=43.49 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 90 (116)
.+.-.-|+-++..|+|.+|...|+.|+-. .|-. ...+.+.+.|++. .|+|=++++.....+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence 46678899999999999999999888632 3433 3468899999888 799999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhh
Q psy12719 91 SIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~ 110 (116)
...|++..+++..|.+....
T Consensus 258 ~~~~~nvKA~frRakAhaa~ 277 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAV 277 (329)
T ss_pred hcCCchHHHHHHHHHHHHhh
Confidence 99999999999998887654
No 244
>KOG2053|consensus
Probab=97.99 E-value=0.00018 Score=48.52 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=82.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
..++|..++|..+++..-...+++...+-.+-.+|...+++++|..+|++++..+|. ....+.+-.+|.+ .++|.+-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHH
Confidence 457889999998888777777777778888999999999999999999999999999 8888888888777 78888777
Q ss_pred HHHHHHHhcCCCcHHH-HHHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFA-YETLGTIE 107 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~l~~~~ 107 (116)
+.--+..+..|+.+.. |..+..+.
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHH
Confidence 7777777788887643 33444333
No 245
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.93 E-value=0.00029 Score=34.96 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhhcc
Q psy12719 47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRTF 112 (116)
Q Consensus 47 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 112 (116)
.+..+++.+..+|++..+.+.++..+.. .|++++|++.+..++..++++ ..+...+-.++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567888999999999999999999888 899999999999999998765 4455555555554443
No 246
>PRK10941 hypothetical protein; Provisional
Probab=97.92 E-value=0.00012 Score=43.41 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=61.7
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
.+.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++.-++..|+.+.+-.....+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999998876554443
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.91 E-value=2.9e-05 Score=44.71 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=45.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (116)
..+.++.+.+.+.+.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456777788888888888888888888888888888888888888888888888765
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.90 E-value=0.00043 Score=44.18 Aligned_cols=96 Identities=16% Similarity=0.296 Sum_probs=61.9
Q ss_pred cccchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhcCC-
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPENASLYVHRAMLMLQARGN- 78 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~- 78 (116)
+..+.|+.++|++.+...++.+|. +..++.++..++...+.+.++...+.+--++ -|+++...+..+..-.+..++
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 345677888888888888877765 3557777888888888888888777775333 255555555555443332222
Q ss_pred --------------HHHHHHHHHHHHhcCCCcHH
Q psy12719 79 --------------VDEAIKLIEKAISIDKSCMF 98 (116)
Q Consensus 79 --------------~~~a~~~~~~~~~~~~~~~~ 98 (116)
-..|.+.+.++++.+|..+.
T Consensus 348 fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 348 FSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 12356777888887776554
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.89 E-value=0.00081 Score=36.79 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
.+.....+-...++.+++...+...-.+.|..+..-..-|..+.. .|++.+|+..++......|..+.+.-.++.|+..
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 445555566678899999999999999999999999999999988 8999999999999999999999999999999998
Q ss_pred hcccc
Q psy12719 110 RTFVV 114 (116)
Q Consensus 110 ~~~~~ 114 (116)
+|+++
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88764
No 250
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.88 E-value=0.00035 Score=35.75 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=68.3
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcC-----------hhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQED-----------FDGAEEYFNRSIRVDPENASLYVHRA 69 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~ 69 (116)
+...|++-+|+++.+..+...+++. ..+...|.++..... .-.+++++.++..+.|..+..++.+|
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 4578999999999999999887775 455666777764332 34678899999999999988888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 70 MLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.- +....-|+++..-.++++..
T Consensus 86 ~~-l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 86 SQ-LGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HH-hhhHHHHHHHHHHHHHHhcc
Confidence 86 33356788888888887765
No 251
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.88 E-value=5.2e-05 Score=43.72 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=54.5
Q ss_pred HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
.....++.+.+.+.|.+++...|+....|+.+|....+ .|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence 44578899999999999999999999999999999777 899999999999999999976
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.85 E-value=6e-05 Score=30.66 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 64 LYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
++.++|.++.. .|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 47889999887 99999999999996654
No 253
>KOG4340|consensus
Probab=97.84 E-value=0.00019 Score=43.26 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=85.3
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
...+|.++++++.--.+..|.+.-.+..+|.+|+...+|..|..+|++.....|......+..+..+++ .+.+..|...
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV 100 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRV 100 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHH
Confidence 456789999999999999998888899999999999999999999999999999999988888998888 8999999988
Q ss_pred HHHHHhcCCC-cHHHHHHHHHHHHhhccc
Q psy12719 86 IEKAISIDKS-CMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 113 (116)
....... |. ...+...-+-+..+.+++
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl 128 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDL 128 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccC
Confidence 8766543 22 123344444455555544
No 254
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.82 E-value=6.7e-05 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (116)
.+++.+|.++.. .+++++|+..+.++++..|+
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 467899999887 89999999999999998875
No 255
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.82 E-value=0.0011 Score=35.89 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=58.6
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
..+.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++......+..+...-.++.|++. +|+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence 45677777777777777888888888888888889999999999988888888888888888888665 77765
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.81 E-value=0.00063 Score=36.71 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
....-...++++++...+...-.+.|+.+..-..-|..+.. .|++++|+..++...+-.+..+...-.++.|+..+||.
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344458999999999999989999999999999999888 89999999999999998888888888999999888876
Q ss_pred c
Q psy12719 114 V 114 (116)
Q Consensus 114 ~ 114 (116)
+
T Consensus 95 ~ 95 (153)
T TIGR02561 95 E 95 (153)
T ss_pred H
Confidence 4
No 257
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.80 E-value=0.0016 Score=37.53 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=67.9
Q ss_pred chhcHHHHHHHHHHHHhhC-----CCh--hHHHHHHHHHHHhhcChh-------hHHHHHHHHhccCCC------CHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTH-----SNV--VEACTLFAQVLVDQEDFD-------GAEEYFNRSIRVDPE------NASLY 65 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~-------~A~~~~~~a~~~~~~------~~~~~ 65 (116)
....+++|++.|.-++-.. +.. +..+..+|.+|...++.+ .|...|.+++..... ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3456788888877776432 122 557888999999888844 555666666654322 25678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-FAYETLGT 105 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 105 (116)
+.+|.+..+ .|++++|.+++.+++.....+. .....+++
T Consensus 169 YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 899999777 9999999999999998644332 34444443
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.78 E-value=0.0025 Score=39.03 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHhhcC------------hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719 15 KEFRNFVDTHSNVVEACTLFAQVLVDQED------------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 82 (116)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (116)
..+++.++.+|.+.+.|..+...--..-. .+.-+..+++|++.+|.+...+..+-....+ ..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence 45788889999999999888765443221 3456778899999999988887776666455 6788888
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHH
Q psy12719 83 IKLIEKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~ 105 (116)
.+-+++++..+|+++.+|...-.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHH
Confidence 89999999999998877765433
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.72 E-value=0.0005 Score=44.07 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=67.1
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH-HHHHHHHHHHHhcCCH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNV 79 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (116)
...|+.++|++.+++++.....- .-.++.++.++..+++|++|..++.+..+.+.-+.. ..|..|.++.. .++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~-l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM-LGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccc
Confidence 45789999999999988533222 336788999999999999999999999987654433 45566777666 8888
Q ss_pred -------HHHHHHHHHHHhc
Q psy12719 80 -------DEAIKLIEKAISI 92 (116)
Q Consensus 80 -------~~a~~~~~~~~~~ 92 (116)
++|.+.+.++-..
T Consensus 357 ~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 8888888777654
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.70 E-value=0.0039 Score=38.88 Aligned_cols=55 Identities=16% Similarity=0.354 Sum_probs=43.9
Q ss_pred chhcHHHHHHHHHHH-HhhCCChhHHHHHHHHHHHh---------hcChhhHHHHHHHHhccCCC
Q psy12719 6 DRERVEQSLKEFRNF-VDTHSNVVEACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~ 60 (116)
+.|+.++|++.+..+ ....+.+++++...|.+|.. ....++|+.+|.++...+|+
T Consensus 194 ~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 194 KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 478999999999994 45556778899999998863 23478999999999988865
No 261
>KOG3364|consensus
Probab=97.66 E-value=0.002 Score=34.35 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHhh---cChhhHHHHHHHHhc-cCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719 28 VEACTLFAQVLVDQ---EDFDGAEEYFNRSIR-VDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 28 ~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (116)
....++++.++.+. .+.++.+..+...++ ..|. .....+.++..+++ .++|+.+..++...++..|++..+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45677888887754 456788889998886 4453 35578888888888 899999999999999999999877655
Q ss_pred HHHHH
Q psy12719 103 LGTIE 107 (116)
Q Consensus 103 l~~~~ 107 (116)
--.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 44443
No 262
>KOG1310|consensus
Probab=97.62 E-value=0.0012 Score=42.82 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=75.9
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh---hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD---QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
+.+..++..|.+++...|.....+.+.+.++++ .|+.-.|+..+..+++++|....+|+.++.++.. ++++.+|++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence 456788899999999999988888888888876 4567788888899999999999999999999776 999999999
Q ss_pred HHHHHHhcCCCc
Q psy12719 85 LIEKAISIDKSC 96 (116)
Q Consensus 85 ~~~~~~~~~~~~ 96 (116)
....+...+|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 998888788854
No 263
>KOG1586|consensus
Probab=97.61 E-value=0.0013 Score=38.33 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred hhcChhhHHHHHHHHhccCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719 40 DQEDFDGAEEYFNRSIRVDPENAS------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 40 ~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (116)
+..+..+|+.++++++.+..+-.. .+..+|.+|-..+.++++|+..|+.+-+...+
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 455777888888888877654433 34477887666567888888888888776443
No 264
>KOG1586|consensus
Probab=97.61 E-value=0.0021 Score=37.52 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=64.9
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHH------HHHHHHHHHh-hcChhhHHHHHHHHhccCCCC------HHHHHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEA------CTLFAQVLVD-QEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLM 72 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~ 72 (116)
+..+.++|+.++++++.+..+-.+. +..+|.+|.. ..+++.|+.+|+++-...... -..+...+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 4557888999999999887665443 4478888764 489999999999987654322 22455555543
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 73 LQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
-. .++|.+|+..|++.....-++
T Consensus 165 a~-leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQ-LEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HH-HHHHHHHHHHHHHHHHHhccc
Confidence 44 799999999999988765554
No 265
>KOG3364|consensus
Probab=97.54 E-value=0.00059 Score=36.24 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=53.5
Q ss_pred cchhcHHHHHHHHHHHHh-hCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVD-THSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 70 (116)
.+..+-.+.+.+++..++ ..|.. -+..+.++.-+.+.++|+.++.+.+..++..|++.++....-.
T Consensus 46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 345677888999999996 45544 4577888999999999999999999999999999887654433
No 266
>KOG1258|consensus
Probab=97.50 E-value=0.0086 Score=39.19 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=87.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
...|+++...-.|++++--+.....+|..++......|+.+-|...+.++.++. |..+.+...-+.. ....|+++.|.
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~e~~~n~~~A~ 386 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-EESNGNFDDAK 386 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-HHhhccHHHHH
Confidence 356888999999999998888889999999999999999999999999988875 4555555555555 34479999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
..+++..+.-|+...+-..-..+....|+.+
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 9999999888988776666666666666554
No 267
>KOG2396|consensus
Probab=97.48 E-value=0.00085 Score=42.91 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC-hhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRVDPENASLYVHRAM 70 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~ 70 (116)
.+.+.-.+|.+++..+|++++.|..-|...+.-+. .+.|...+.++++.+|+++..|...-.
T Consensus 120 ~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 120 TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 37788889999999999999999999888776665 999999999999999999987764433
No 268
>KOG4814|consensus
Probab=97.46 E-value=0.0019 Score=42.74 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 98 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 98 (116)
-|.-+++..+|..++++|...++..|.+ ......+..||+. +.+.+.|.+.++++-+.+|.++-
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHH
Confidence 3444445555555555555555444332 2334445555554 55555555555555555555443
No 269
>KOG2047|consensus
Probab=97.45 E-value=0.0057 Score=40.67 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=23.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCC----hhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN----VVEACTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
...|+.+.|..+|+++.+..-. -..+|+.-|..-.+..+++.|..+.+++.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 3344445555555555444311 13344444444444455555555444443
No 270
>KOG4814|consensus
Probab=97.44 E-value=0.004 Score=41.30 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=71.8
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
.+..+|..+++.|...+..-|.+ ......++.+|....+.+.|.+++..|-+.+|+++-.-......... .+.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcc
Confidence 45678999999999999887765 34567788999999999999999999999999998776666666455 788
Q ss_pred HHHHHHHHHHHHhc
Q psy12719 79 VDEAIKLIEKAISI 92 (116)
Q Consensus 79 ~~~a~~~~~~~~~~ 92 (116)
-++|...+......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 89998888776654
No 271
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0044 Score=36.80 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 105 (116)
..++=..+...++++.|..+..+.+..+|.++.-+.-.|.+|.+ .|.+..|++.+...++..|+++.+-.....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 33444567789999999999999999999999999999999888 999999999999999999998766544433
No 272
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.41 E-value=0.0025 Score=32.71 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=56.5
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHhcCCCcHHHH
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQA---RGN-------VDEAIKLIEKAISIDKSCMFAY 100 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~---~~~-------~~~a~~~~~~~~~~~~~~~~~~ 100 (116)
.+.-++..|++-+|++..+..+...+++. ..+..-|.+++.. ..+ .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35678899999999999999999888765 4555667775441 122 4467888899999999998888
Q ss_pred HHHHHHH
Q psy12719 101 ETLGTIE 107 (116)
Q Consensus 101 ~~l~~~~ 107 (116)
+.+|.-+
T Consensus 82 ~~la~~l 88 (111)
T PF04781_consen 82 FELASQL 88 (111)
T ss_pred HHHHHHh
Confidence 8887753
No 273
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=97.38 E-value=0.0029 Score=37.63 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy12719 13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 73 (116)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 73 (116)
|+.+|.+|+...|+++..+..+|.++...|+.-.|+-+|-+++-.....+.+..++....-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999988766556778888877743
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0078 Score=34.17 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGT 105 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~ 105 (116)
+.+.++..+...+++++|...++.++....+. .-+-.+++.+.+. +|.+++|...+..... ++. +..-...|.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGD 167 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence 45667888889999999999999998665544 3456788999888 8999999988864422 222 334556788
Q ss_pred HHHhhcccccC
Q psy12719 106 IEVQRTFVVLW 116 (116)
Q Consensus 106 ~~~~~~~~~~a 116 (116)
++...|+.++|
T Consensus 168 ill~kg~k~~A 178 (207)
T COG2976 168 ILLAKGDKQEA 178 (207)
T ss_pred HHHHcCchHHH
Confidence 88888776543
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.37 E-value=0.00054 Score=28.40 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
++..+|.++..+|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555543
No 276
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=97.35 E-value=0.003 Score=37.56 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 47 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
|+.+|.+|+.+.|.+...+..+|.++.. .|+.-.|+-+|-+++......+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999877 8999999999999998765567788888887766
No 277
>KOG2610|consensus
Probab=97.31 E-value=0.0046 Score=38.12 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=57.0
Q ss_pred cchhcHHHHHHHHHHHHhh-CCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 5 GDRERVEQSLKEFRNFVDT-HSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
...|+.......+++.+.. +|+. .-+...++..+...|-|++|.+..+++++++|.+..+....+-++-. .+++.
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~K 226 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRHK 226 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchhh
Confidence 3456666667777777765 4444 44566677777788888888888888888888877776666666433 56666
Q ss_pred HHHHHHHH
Q psy12719 81 EAIKLIEK 88 (116)
Q Consensus 81 ~a~~~~~~ 88 (116)
++.+...+
T Consensus 227 eg~eFM~~ 234 (491)
T KOG2610|consen 227 EGKEFMYK 234 (491)
T ss_pred hHHHHHHh
Confidence 66655543
No 278
>KOG1550|consensus
Probab=97.30 E-value=0.011 Score=39.05 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=60.5
Q ss_pred chhcHHHHHHHHHHHHhh-----CCChhHHHHHHHHHHHhhc-----ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q psy12719 6 DRERVEQSLKEFRNFVDT-----HSNVVEACTLFAQVLVDQE-----DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 75 (116)
...+.+.|+.+++.+... ....+.+...+|.+|.... +...|..+|.++-... ++.+.+.+|.++...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG 338 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC
Confidence 456777778877777661 0113445667777776632 5566777777776653 445566777775543
Q ss_pred c--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 76 R--GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 76 ~--~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
. .++.+|.++|..+... .+..+.+.++.++..
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred CccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 3 3466777777766543 344456666666543
No 279
>KOG1914|consensus
Probab=97.28 E-value=0.0055 Score=39.88 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 18 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
++-++.+|.+.+.|..+-.-+..+ .+++.++.|++.....|.++.+|.......+. .++|+.-+..|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 566778888888888887766555 88888888888888888888888888777777 78888888888888754
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.27 E-value=0.01 Score=33.31 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
..++..+|..|.+.|+.++|.+.|.++....... ...++.+..+.+. .+++......+.++-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 3578889999999999999999999977765433 3455666666666 78998888888877654
No 281
>KOG1941|consensus
Probab=97.26 E-value=0.0035 Score=38.98 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------H
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------M 97 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 97 (116)
.++.+++..+.+..++.+++.+....+.+.... ......++.+++. ++.++++.+.|+.++....++ -
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 466777777777888888888877776654322 3466778888777 889999999999998764322 2
Q ss_pred HHHHHHHHHHHhhcccccC
Q psy12719 98 FAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~a 116 (116)
.+...|+..+....|+++|
T Consensus 163 qvcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred ehhhhHHHHHHHHHhhhHH
Confidence 4566788888887777764
No 282
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.023 Score=37.40 Aligned_cols=100 Identities=16% Similarity=0.027 Sum_probs=72.4
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHH-HhccCCCCHHHHHHH------HHHHHHhcCC
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASLYVHR------AMLMLQARGN 78 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~------~~~~~~~~~~ 78 (116)
..++...+.-.+...+..+|.+..+..+++......|..-.+...+.. +....|++......+ +..... .++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 157 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR 157 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence 445566677778888888898888888888887776666655555544 777888886655444 666444 789
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
..++...+.++....|..+.+...+...
T Consensus 158 ~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 158 TAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 9999999999999888886655544444
No 283
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.24 E-value=0.0077 Score=31.53 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred chhcHHHHHHHHHHHHhhCCC------------hhHHHHHHHHHHHhhcChhhHHHHHHHHhc-------cCCCCH----
Q psy12719 6 DRERVEQSLKEFRNFVDTHSN------------VVEACTLFAQVLVDQEDFDGAEEYFNRSIR-------VDPENA---- 62 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~---- 62 (116)
..|.|++|...+.++++.... +..++-.++..+...|+|++++.....++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 346789999999999876522 123667788888899999988777666653 344443
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.+.++.+..+-. .|+.++|...|+.+.+.
T Consensus 101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 455678888555 99999999999988653
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.13 E-value=0.0025 Score=26.29 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
..++.++|.++.. .|++++|...+++++..
T Consensus 2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 3568899999887 89999999999999875
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.10 E-value=0.0092 Score=29.79 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=35.3
Q ss_pred HhhcChhhHHHHHHHHhccCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719 39 VDQEDFDGAEEYFNRSIRVDPEN---------ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 39 ~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 93 (116)
.+.+++.+|.+.+.+.+...... ..+..+++.++.. .|++++|...+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 36677777766666655432211 2356677777666 788888888888887763
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=97.09 E-value=0.018 Score=32.92 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhhcccccC
Q psy12719 45 DGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS----CMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 45 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 116 (116)
+.|...|-++-... -+++...+.+|..| . ..+.++++..+.+++++.+. +++++..|+.++..+|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-T-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-H-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45666665543322 25678888888874 4 69999999999999998543 488999999999999998875
No 287
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=97.09 E-value=0.0028 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhcChhhHHHH--HHHHhccCC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEY--FNRSIRVDP 59 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~--~~~a~~~~~ 59 (116)
.+..+|..+..+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455566666666666666666 335444444
No 288
>KOG0530|consensus
Probab=97.07 E-value=0.023 Score=33.92 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD-EAIKLI 86 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 86 (116)
.-..|+...+.++..+|.+-.+|...-.+.. -..+..+-++++...+..+|.+-.+|..+-.+.-. .|++. .-.+..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef~ 136 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEFT 136 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHHH
Confidence 3456666777777777777666655544443 35567788889999999999999999888777444 78887 788888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 87 EKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
+.++..+..+-.+|...-.+...-+.++
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 8898888877777777776666555543
No 289
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.032 Score=35.32 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=26.2
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 53 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 53 (116)
..|+.+.|..+-+.+....|.-+.++...-...+..|+|+.|++..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 345555555555555555555554444444444556666666655544
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.06 E-value=0.028 Score=34.58 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=80.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCC----hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CC-C-----------------
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSN----VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DP-E----------------- 60 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~-~----------------- 60 (116)
..+.|.++.|...+.++....+. .+.+....+.+....|+..+|+..++..+.. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 35678899999999998876522 4667788899999999999999998887761 10 0
Q ss_pred --------C-------HHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 61 --------N-------ASLYVHRAMLMLQAR------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 61 --------~-------~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
. ..++..+|..... . +..+++...|..+++.+|+...+|..+|..+...
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0 2345556665434 5 8889999999999999999998999888876553
No 291
>KOG2471|consensus
Probab=97.04 E-value=0.0053 Score=39.62 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=60.9
Q ss_pred cccchhcHHHHHHHHHHHHh-hC-----------------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVD-TH-----------------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 64 (116)
++.+.+.|.-+..+|.++++ .+ ..+....++.|..+...|+.-.|.++|.++....-.+|..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 45678889999999999985 11 1234578899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12719 65 YVHRAMLMLQ 74 (116)
Q Consensus 65 ~~~~~~~~~~ 74 (116)
|..++.|...
T Consensus 372 WLRlAEcCim 381 (696)
T KOG2471|consen 372 WLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 292
>KOG3617|consensus
Probab=96.99 E-value=0.0095 Score=41.00 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHH----------hccCCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRS----------IRVDPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEK 88 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a----------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 88 (116)
..+++++.-+...++...|+++|+++ +..+|.. +..|..-|.. +...|+++.|+..|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-lES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-LESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-HhcccchHHHHHHHHH
Confidence 36788899889999999999999885 2333432 3445555664 4458999999999988
Q ss_pred HHhc---------------------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 89 AISI---------------------DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 89 ~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
+-.. ...+..+-+.+|+.|...|++.+|
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 7653 223455677888888888877553
No 293
>KOG1310|consensus
Probab=96.98 E-value=0.0059 Score=39.79 Aligned_cols=86 Identities=19% Similarity=0.110 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
...-|.-.+..+....++..|.+++...|.....+.+.+.++.++ .|+.-.|+.....++.++|....+|+.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 333444444566778899999999999999999999988887653 467778888889999999999999999999999
Q ss_pred hhcccccC
Q psy12719 109 QRTFVVLW 116 (116)
Q Consensus 109 ~~~~~~~a 116 (116)
..+++.+|
T Consensus 457 el~r~~ea 464 (758)
T KOG1310|consen 457 ELTRYLEA 464 (758)
T ss_pred HHhhHHHh
Confidence 99887664
No 294
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.97 E-value=0.0029 Score=31.57 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=44.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh---------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV---------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 59 (116)
.+.++|.+|++.+.+..+..... ..+...+|.++...|++++|+..++.++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46789999988888887665322 34667889999999999999999999998754
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.94 E-value=0.033 Score=33.51 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=67.9
Q ss_pred hcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhc-------ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc---
Q psy12719 8 ERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQE-------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--- 76 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 76 (116)
.+..+|..+|.++....... ..+...+|..+..-. +...|...|.++.... ++.+.+.+|.+|....
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 37788888888888775443 344667777765531 2336788888777665 6777888888765432
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
.++.+|..+|.++.+... ....+.++ ++...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 378899999998888766 66777777 444433
No 296
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.91 E-value=0.0028 Score=38.57 Aligned_cols=63 Identities=11% Similarity=0.243 Sum_probs=52.7
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHH-HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTL-FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 69 (116)
.+.+.+.-.+|.+++..+|.+.+.|.. -+.-++..+++..++..+.++++.+|+++..|+..-
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 356777788899999999999998876 344567899999999999999999999998876543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.90 E-value=0.026 Score=31.66 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CHH----HHHHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NAS----LYVHRAMLMLQ 74 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~~~~~~~~ 74 (116)
|.+.|+.+.|++.|.++...+... .+.++.+-.+....+++.....+..++-..... ++. ....-|..++.
T Consensus 46 ~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~ 125 (177)
T PF10602_consen 46 YCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLA 125 (177)
T ss_pred HHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 567899999999999988876443 457778888888999999999999888654322 222 23334555555
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q psy12719 75 ARGNVDEAIKLIEKAISIDK 94 (116)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~ 94 (116)
.++|..|.+.|..+..-..
T Consensus 126 -~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 126 -QRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred -hchHHHHHHHHHccCcCCC
Confidence 7999999999988876554
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.88 E-value=0.038 Score=33.25 Aligned_cols=96 Identities=10% Similarity=0.150 Sum_probs=67.0
Q ss_pred ccchhcHHHHHHHHHHHHhhC----CCh----hHHHHHHHHHHHhhc-ChhhHHHHHHHHhcc----CC---CC------
Q psy12719 4 PGDRERVEQSLKEFRNFVDTH----SNV----VEACTLFAQVLVDQE-DFDGAEEYFNRSIRV----DP---EN------ 61 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~----~~---~~------ 61 (116)
..++|+++.|..++.++-... |+. .+..++.|......+ +++.|..+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986654 333 347788888888899 999999999999876 21 11
Q ss_pred -HHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCcHHHH
Q psy12719 62 -ASLYVHRAMLMLQARGNVD---EAIKLIEKAISIDKSCMFAY 100 (116)
Q Consensus 62 -~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 100 (116)
..++..++.+++. .+.++ +|...+..+-...|+.+.++
T Consensus 83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2356677888776 45443 45555555555567766555
No 299
>KOG0529|consensus
Probab=96.88 E-value=0.048 Score=34.45 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC--hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC---HHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEAI 83 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~ 83 (116)
-.++-+.+...++..+|++-.+|.....++.+.+. +..=+..+.++++.+|++-.+|..+-.+.-..... ..+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45677888899999999999999999999876553 67888999999999999988887665554443333 66778
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 84 KLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+...+++..++++-.+|.....+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8889999999999888888777665
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.85 E-value=0.057 Score=34.78 Aligned_cols=111 Identities=13% Similarity=0.023 Sum_probs=79.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
.+++++.+|.++|.+..+...+++ +++.++-...+-.++.+.........-+..|.++....-.|...++ .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~-~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK-QKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhhH
Confidence 467899999999999988765553 3444444444567778877777777777888888888888888788 8999
Q ss_pred HHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHhhcccccC
Q psy12719 80 DEAIKLIEKAISIDKSC---------------MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a 116 (116)
.+|.+.+......-.+. ...-...+.++...|++.++
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~Eg 147 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEG 147 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchH
Confidence 99999987766542111 11122456777888887653
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.82 E-value=0.052 Score=34.00 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=64.1
Q ss_pred hcHHHHHHHHHHHH------------hhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------------C---
Q psy12719 8 ERVEQSLKEFRNFV------------DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------------D--- 58 (116)
Q Consensus 8 ~~~~~A~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------~--- 58 (116)
..|.++...|..++ ..+|-+.+++..++.++..+|+...|.+.+++|+=. +
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 44555555555444 455778889999999999999999999988887411 1
Q ss_pred ---------CCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHH
Q psy12719 59 ---------PENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFA 99 (116)
Q Consensus 59 ---------~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 99 (116)
+.|.. +.+.....+.+ .|-+..|.+..+-.+.++|. ||..
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGR-RGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcch
Confidence 11211 33444444345 79999999999999999998 6543
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.82 E-value=0.003 Score=23.57 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcChhhHHHHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYF 51 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~ 51 (116)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444443
No 303
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.80 E-value=0.0034 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
++..+|.+....++|+.|+..|.+++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.77 E-value=0.048 Score=32.89 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.++..++..+...++++.+...+++.+..+|.+...|..+-..|+. .|+...|+..|.+.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 3567788888899999999999999999999999999999999888 89999999999887663
No 305
>KOG1585|consensus
Probab=96.76 E-value=0.033 Score=33.02 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=25.8
Q ss_pred chhcHHHHHHHHHHHHhhC-----CChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 6 DRERVEQSLKEFRNFVDTH-----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
+...+.+++++++++.... |+..-.-...+--.....++++|+..|++++.+
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3445566666666665443 222222222233334555666666666666544
No 306
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0087 Score=35.62 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=59.7
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
+...++++.|....++.+..+|+++.-+.-.|.+|.+.|.+.-|++.+...+...|+.+.+-......
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34567899999999999999999998889999999999999999999999999999988766554443
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.71 E-value=0.0045 Score=23.06 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
.+.+.+|.++.. .|++++|...++
T Consensus 2 ~a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHh
Confidence 467889999888 899999998775
No 308
>KOG4507|consensus
Probab=96.71 E-value=0.0063 Score=40.16 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=51.7
Q ss_pred hhcHHHHHHHHHHHHhhCCChh--HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVV--EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
+|+..+|.+++..++...|... .+...+|.++.+.|...+|--.+..|+...|.....++.++.++.. ++.+.....
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~S~~ 304 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNHSVL 304 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhhhhh
Confidence 4555566666666665555442 2445556666666666666655555555555555556666666555 566666666
Q ss_pred HHHHHHhcCCCc
Q psy12719 85 LIEKAISIDKSC 96 (116)
Q Consensus 85 ~~~~~~~~~~~~ 96 (116)
.|..+.+..|..
T Consensus 305 ~ydha~k~~p~f 316 (886)
T KOG4507|consen 305 CYDHALQARPGF 316 (886)
T ss_pred hhhhhhccCcch
Confidence 666666665543
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.70 E-value=0.046 Score=31.70 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhCCC--h----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-HHHHHHHH
Q psy12719 10 VEQSLKEFRNFVDTHSN--V----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYVHRAM 70 (116)
Q Consensus 10 ~~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~ 70 (116)
+..|.+.|.+++..... . ..+.+.+|.+..+.|++++|..+|.+++.....+. .....++.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 56778888888765422 2 45788899999999999999999999997654443 34555544
No 310
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.68 E-value=0.0086 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQ 36 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 36 (116)
+.+.+...|++++...|.+...|..+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455566666666666655555555543
No 311
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.68 E-value=0.026 Score=35.96 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=63.7
Q ss_pred cchhcHHHHHHHHHHHHhhCCC--------h----------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN--------V----------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 66 (116)
.++++|..|..-|..+++++.+ . ..+-..+..+|.+.++.+-|+..-.+.|..+|....-+.
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHL 266 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHL 266 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHH
Confidence 4566777777777777666521 1 113456788999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKA 89 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~ 89 (116)
..+.+ ++.+.+|.+|...+--+
T Consensus 267 rqAav-fR~LeRy~eAarSamia 288 (569)
T PF15015_consen 267 RQAAV-FRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 99988 55588888887766544
No 312
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.64 E-value=0.021 Score=36.36 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=59.6
Q ss_pred HHHHHhhcChhhHHHHHHHHhccC--------CCC---H-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVD--------PEN---A-------SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~--------~~~---~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
|..++++++|..|.--|+.++.+. |.. . .+--.+..||+. +++.+.|+...-+.+.++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhhcCcch
Confidence 445566676666666666665442 111 1 123468889888 999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccC
Q psy12719 97 MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~a 116 (116)
+.-+...+.+...+.+|.+|
T Consensus 262 frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777654
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.59 E-value=0.02 Score=37.24 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=54.2
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
..|+...|-.....+++..|..++.....+.+....|+|+.+...+..+-..-.....+.-.+-...+. ++++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~-l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG-LARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc-hhhHHHHHHH
Confidence 456777777777788888888888778888899999999998888765544332222222222222234 5555555555
Q ss_pred HHHHHhc
Q psy12719 86 IEKAISI 92 (116)
Q Consensus 86 ~~~~~~~ 92 (116)
..-.+..
T Consensus 380 a~~~l~~ 386 (831)
T PRK15180 380 AEMMLSN 386 (831)
T ss_pred HHHHhcc
Confidence 5544443
No 314
>KOG1550|consensus
Probab=96.55 E-value=0.12 Score=34.40 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc---ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEA 82 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~a 82 (116)
+...|..+|.++... +++++.+.+|.++.... ++..|.++|..|... -+..+.+.++.|+... ..+.+.|
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 788899999998777 44566678888887554 678999999988766 4677889999986542 2379999
Q ss_pred HHHHHHHHhcC
Q psy12719 83 IKLIEKAISID 93 (116)
Q Consensus 83 ~~~~~~~~~~~ 93 (116)
..++.++.+.+
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 99999998887
No 315
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.51 E-value=0.0093 Score=24.56 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.++..+|.+.+. .++|++|++.|.+++++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 467889999887 89999999999999876
No 316
>KOG1258|consensus
Probab=96.46 E-value=0.13 Score=34.03 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=77.4
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHH---HHHHHhccCCC---CHHHHHHHHHHHHHhcCCH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE---YFNRSIRVDPE---NASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~---~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~ 79 (116)
..|++..|...++......|+...+-........++|+.+.+.. .+.....-... ....+...+...+...++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 46788999999999988888888877777777888888888773 33322221111 1345666677766778999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
+.|...+.++++..|.+...+..+..+...++
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999999998877777766655443
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.45 E-value=0.095 Score=32.31 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHH
Q psy12719 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIE 87 (116)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~ 87 (116)
.+.-+.++++|++.+|++...+..+-....+..+.++...-+++++..+|.+...|...-...... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456788999999999999998888888888888888889999999999999998887665542221 235667777777
Q ss_pred HHHhc
Q psy12719 88 KAISI 92 (116)
Q Consensus 88 ~~~~~ 92 (116)
+++..
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 77654
No 318
>KOG2300|consensus
Probab=96.39 E-value=0.14 Score=33.48 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=73.5
Q ss_pred cchhcHHHHHHHHHHHHhhC---CC-------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-CCH--HHHHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTH---SN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-ENA--SLYVHRAML 71 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~--~~~~~~~~~ 71 (116)
.-.|++.+|++....+...+ |. .+..++.+|......+.++.|...|..+.+... .+. .+-.+++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34688888888887776654 44 245678888888899999999999999987643 333 345678999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhhccccc
Q psy12719 72 MLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 115 (116)
|++ .++.+.-.+.++..-..+... ..+++..|.....++++.+
T Consensus 414 YL~-~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE 463 (629)
T KOG2300|consen 414 YLR-IGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE 463 (629)
T ss_pred HHH-hccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 888 677766655555433332221 3455566666666666554
No 319
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.38 E-value=0.052 Score=34.95 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHh
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQ 109 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 109 (116)
|..++.+|+|.++..+-.=..+++| ++.++..+|.+++. ..+|.+|..++...-. +.+ +..+...++.|+..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence 3445678999999888877888999 99999999999888 8999999998875432 221 23344455555443
No 320
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.33 E-value=0.016 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719 79 VDEAIKLIEKAISIDKSCMFAYETLG 104 (116)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~l~ 104 (116)
.+.+...+++++...|.++..|....
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 34444444444444444444444433
No 321
>KOG2047|consensus
Probab=96.26 E-value=0.2 Score=33.96 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=58.4
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC--CCHHHHHH---HHHHHHHhcCCHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVH---RAMLMLQARGNVDEA 82 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~---~~~~~~~~~~~~~~a 82 (116)
|-++.-...|++.+++.--.|..-.++|..+....-++++.+.|++.+.+.| ....+|.. ....-+. ...++.|
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHH
Confidence 4455556677777777766777777888887777788888888888887653 33334432 2222233 4567888
Q ss_pred HHHHHHHHhcCCC
Q psy12719 83 IKLIEKAISIDKS 95 (116)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (116)
...|+++++..|.
T Consensus 570 RdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 570 RDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHhcCCH
Confidence 8888888887773
No 322
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.14 Score=34.01 Aligned_cols=90 Identities=16% Similarity=-0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhCCChhHHHHH--HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH-H
Q psy12719 13 SLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK-A 89 (116)
Q Consensus 13 A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~ 89 (116)
++..+...+..+|.++..... +.......++...+......++..+|.+..+..+++..... .|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL-DGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 455566666677777765433 46677788888899999999999999999999999998666 5666666655555 7
Q ss_pred HhcCCCcHHHHHHH
Q psy12719 90 ISIDKSCMFAYETL 103 (116)
Q Consensus 90 ~~~~~~~~~~~~~l 103 (116)
....|++......+
T Consensus 129 ~~~~~~~~~~~~~~ 142 (620)
T COG3914 129 EWLSPDNAEFLGHL 142 (620)
T ss_pred HhcCcchHHHHhhH
Confidence 77888876555544
No 323
>KOG2300|consensus
Probab=96.23 E-value=0.17 Score=33.04 Aligned_cols=109 Identities=9% Similarity=0.082 Sum_probs=72.1
Q ss_pred chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHHHHHHh
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQA 75 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 75 (116)
.-+.++.|+..|..+.+..... ...-.++|.+|.+.++-+.-.+..+..-..+..+ ..+++..|...+.
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~- 457 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK- 457 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH-
Confidence 3467889999999888775432 2345678899999887666555554432222211 3467777877777
Q ss_pred cCCHHHHHHHHHHHHhcCCC-c-----HHHHHHHHHHHHhhccccc
Q psy12719 76 RGNVDEAIKLIEKAISIDKS-C-----MFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~ 115 (116)
++++.+|...+.+.++.... + ...+..++.+....|+..+
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 89999999999999887521 1 3345566777666666543
No 324
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.15 E-value=0.13 Score=30.96 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcC-----
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARG----- 77 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~----- 77 (116)
.+..+|.++|..+. ...++...+.+|.++.. ..+..+|..+|+++....-.. ..+.+.++.++.. |
T Consensus 91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--Chhhhc
Confidence 34566777776433 33455566677777765 347777777777777664333 3446666666443 3
Q ss_pred ---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719 78 ---NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 78 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (116)
+...|...+.++-... ++.+...+|.+|..
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 2335666666665554 45566666665543
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.05 E-value=0.21 Score=35.32 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=67.2
Q ss_pred chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhh----c---ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQ----E---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 75 (116)
.-+.|+.|+..|.+.....|+. -++.+..|.+...+ | .+++|+.-|++. .-.|.-|--|...+.+|-.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 564 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQR- 564 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHH-
Confidence 3467999999999999999876 45777778776643 2 456666666553 2345556667788888555
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHH
Q psy12719 76 RGNVDEAIKLIEKAISIDKSCMF 98 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~ 98 (116)
+|++++-++++.-+++--|..|.
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 565 LGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999998777654
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.02 E-value=0.032 Score=22.66 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKL--IEKAISIDKS 95 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~ 95 (116)
..++.+|..++. +|++++|+.. +.-+..++|.
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence 457788888777 8999999999 4466666654
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.86 E-value=0.25 Score=31.58 Aligned_cols=39 Identities=13% Similarity=-0.060 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
.|..+.|..+-+++-...|.-+.++...-......|+++
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 455555555555555555554444444333344444443
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.78 E-value=0.1 Score=27.49 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHHHHHH--HHhhcChhhHHHHHHHHhccCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy12719 30 ACTLFAQV--LVDQEDFDGAEEYFNRSIRVDPEN------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--- 92 (116)
Q Consensus 30 ~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 92 (116)
+|..++.. ....|.|++|...++++....... .-++-.++..+.. +|+|++++....+++..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhh
Confidence 44444433 346788999999999987654221 3356677777666 99999998888888754
Q ss_pred ----CCCc----HHHHHHHHHHHHhhcccccC
Q psy12719 93 ----DKSC----MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 93 ----~~~~----~~~~~~l~~~~~~~~~~~~a 116 (116)
+.+. ..+.+..+..+...|+.++|
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA 119 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA 119 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHH
Confidence 4443 33445677777777776653
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.77 E-value=0.11 Score=32.59 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=66.1
Q ss_pred ccchhcHHHHHHHHHHHHhhCCC-hhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCC-----CHHHHHHHHHHHHHhc
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSN-VVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----NASLYVHRAMLMLQAR 76 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~ 76 (116)
..+.|.+..|.++.+-.+.++|. ++- +.+.+=....+.++++=-+..++........ -|..-+..+.+++. .
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l 191 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-L 191 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-h
Confidence 35678999999999999999998 543 3444444456778887777777665542111 23456777777777 6
Q ss_pred CCH---------------HHHHHHHHHHHhcCCCcH
Q psy12719 77 GNV---------------DEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 77 ~~~---------------~~a~~~~~~~~~~~~~~~ 97 (116)
++. +.|...+.+|+...|...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 666 899999999998877653
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.77 E-value=0.084 Score=25.52 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH---HHHHhcCCHHHHHHHHHHHH
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~ 90 (116)
..|.-++..++.++|+..++++++..++.+..+..+|. ++.. .|+|++.+....+-+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444557777777777777777777766554444443 3334 566666665554443
No 331
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.75 E-value=0.2 Score=29.72 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCH
Q psy12719 12 QSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 12 ~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~ 79 (116)
..++.+.+++...... ..+...+|..|+..|++++|...|+.+....... ..+...+..|... .|+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~-~~~~ 234 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR-LGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-hCCH
Confidence 4455555555544321 2244567777777777777777777775443221 2344455555555 6666
Q ss_pred HHHHHHHHHH
Q psy12719 80 DEAIKLIEKA 89 (116)
Q Consensus 80 ~~a~~~~~~~ 89 (116)
+..+...-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.74 E-value=0.19 Score=30.37 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=54.1
Q ss_pred HhhcChhhHHHHHHHHhccC----CCC----HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC----C---Cc------
Q psy12719 39 VDQEDFDGAEEYFNRSIRVD----PEN----ASLYVHRAMLMLQARG-NVDEAIKLIEKAISID----K---SC------ 96 (116)
Q Consensus 39 ~~~~~~~~A~~~~~~a~~~~----~~~----~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~----~---~~------ 96 (116)
.++|+++.|..++.++-... |+. ....++.|...+. .+ +++.|..+++++.+.- + ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 47899999999999986544 333 3467888888777 78 9999999999998872 1 11
Q ss_pred -HHHHHHHHHHHHhhccc
Q psy12719 97 -MFAYETLGTIEVQRTFV 113 (116)
Q Consensus 97 -~~~~~~l~~~~~~~~~~ 113 (116)
..++..++.++...+.+
T Consensus 83 r~~iL~~La~~~l~~~~~ 100 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHHHHHHcCCCh
Confidence 34566777777666554
No 333
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.57 E-value=0.062 Score=34.14 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhc--------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIR--------VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 91 (116)
..++.+++.-.|||..|++.++-.-- ..+-...+++..|.+|+- +++|.+|++.|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45566778889999999998865311 122345678999999888 8999999999988764
No 334
>KOG0530|consensus
Probab=95.52 E-value=0.27 Score=29.66 Aligned_cols=82 Identities=9% Similarity=0.141 Sum_probs=53.9
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChh-hHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD-GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.+..+-++++.+.+..+|++-.+|-..-.+....|++. .-++....++..+..+-.+|..+-.+... -+.++.-....
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y~ 170 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHHH
Confidence 34566678888888888888888877777777777766 66677778888877777777666555332 33344333333
Q ss_pred HHHH
Q psy12719 87 EKAI 90 (116)
Q Consensus 87 ~~~~ 90 (116)
.+.+
T Consensus 171 ~~Ll 174 (318)
T KOG0530|consen 171 DELL 174 (318)
T ss_pred HHHH
Confidence 3333
No 335
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=95.50 E-value=0.18 Score=29.67 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=54.9
Q ss_pred CccccchhcHHHHHHHHHHHHhhC---CChhH---------HHHHHHHHHHhhcChhhH--HHHHHHHhc--cCCCCHH-
Q psy12719 1 MIVPGDRERVEQSLKEFRNFVDTH---SNVVE---------ACTLFAQVLVDQEDFDGA--EEYFNRSIR--VDPENAS- 63 (116)
Q Consensus 1 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~A--~~~~~~a~~--~~~~~~~- 63 (116)
|+-..+.|+++.|+++...+++.+ |+... -...-+......|..-+. ...+..... .-|+...
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 345578899999999999999987 43211 111222233344442211 111222211 1133333
Q ss_pred -HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCcH
Q psy12719 64 -LYVHRAMLMLQ--------ARGNVDEAIKLIEKAISIDKSCM 97 (116)
Q Consensus 64 -~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~ 97 (116)
.+-..|..+++ ..++...|...+++++.++|+..
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34445555432 24578899999999999999863
No 336
>KOG0546|consensus
Probab=95.45 E-value=0.032 Score=34.54 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=76.7
Q ss_pred cchhcHHHHHHHHHHHHhhCC-----------C--------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHS-----------N--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 65 (116)
.+.++++.|..-+.++...-. + -......++.+-...+.+..|+.....++..++....++
T Consensus 233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~ 312 (372)
T KOG0546|consen 233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAH 312 (372)
T ss_pred hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHH
Confidence 345667777766666654321 1 012345566777788899999988888888888889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
+.++..+.. ..++++|.+.+..+....|++......+..+-
T Consensus 313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred HHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 999999777 89999999999999999999877665555443
No 337
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=95.36 E-value=0.18 Score=28.63 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 44 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
....++..++.++..| ++..+.+++.++.. .|+.++|.....++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence 3444555666666666 45566777777666 788888888888888888843
No 338
>PF12854 PPR_1: PPR repeat
Probab=95.32 E-value=0.065 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNR 53 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~ 53 (116)
...|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566666667777777777776654
No 339
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.37 Score=29.46 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 59 (116)
.+++.+..+|++.+..+.++..+...|+.++|.+.+-..++.+-
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34555667799999999999999999999999999888777653
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.18 E-value=0.3 Score=28.13 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 11 EQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 11 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
+.|...|-++-... -+++.....+|..|. ..+.++++..+.+++...+. ++..+..++.++.+ +|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence 44555554443222 234666777776664 78899999999999987543 48899999999887 89998874
No 341
>KOG1914|consensus
Probab=95.12 E-value=0.59 Score=31.17 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=55.3
Q ss_pred cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCC-CHHHHHHHHHHHHHhcCCH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPE-NASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-~~~~~~~~~~~~~~~~~~~ 79 (116)
-|..+++...|..+|+-.++..++++..-..+...+...++-..+...|++++.. .|+ +...|-..-..-.. -|+.
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~-vGdL 488 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN-VGDL 488 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh-cccH
Confidence 3455667777777777777777777766666666666777777777777777665 332 23344444443233 5666
Q ss_pred HHHHHHHHHHHhcCC
Q psy12719 80 DEAIKLIEKAISIDK 94 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~ 94 (116)
....+.-++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666665555555444
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.09 E-value=0.35 Score=28.45 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=45.0
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (116)
+.+..++++...+.-++..|.+....-.+-.+++-.|+|++|..-++-+-.+.|+.
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45667888888888888888887777777777888888888888888888888765
No 343
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=95.05 E-value=0.41 Score=29.04 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=68.4
Q ss_pred chhcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHH---HhhcC----hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh-
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVL---VDQED----FDGAEEYFNRSIRVDPENASLYVHRAMLMLQA- 75 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 75 (116)
..++|++-...+.+.......+ .+..+..+... ..... ...-...++.-++..|++..++..+|..+...
T Consensus 12 ~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~A 91 (277)
T PF13226_consen 12 QARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRA 91 (277)
T ss_pred HhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 4577777777777766443321 11111222111 11111 12356667777888999999888888876541
Q ss_pred --------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 76 --------------------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 76 --------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
..-.+.|...+.++++++|....+...+-.+-...|.+
T Consensus 92 w~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 92 WDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 12367888999999999999988888777776665544
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.04 E-value=0.17 Score=30.63 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=46.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
..++++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999988765
No 345
>KOG0529|consensus
Probab=94.83 E-value=0.61 Score=29.86 Aligned_cols=100 Identities=16% Similarity=0.280 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHh------------hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-
Q psy12719 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD------------QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG- 77 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 77 (116)
.++++.-.+.+..+|+...+|+..-.++.. +.-.++-+.+...+++.+|++..+|+.+..++.+ .+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence 345555566667778876666554333221 2245666788889999999999999999999654 33
Q ss_pred -CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719 78 -NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111 (116)
Q Consensus 78 -~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (116)
++..-.+..+++++.+|.+-.+|...-.+.....
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 3678889999999999999888877666655443
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.81 E-value=0.1 Score=22.22 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=11.8
Q ss_pred HHHHHHHhhcChhhHHHHHHHHh
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
.++..|...|+.+.|+..++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555555544
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.67 E-value=0.5 Score=29.04 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719 32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 89 (116)
...+..|...|.+.+|+.+.++++..+|-+...+..+-..+.. .|+--.+.+.+++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHH
Confidence 3445667788888888888888888888888877777777555 67755555555443
No 348
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=94.65 E-value=0.35 Score=26.25 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719 64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (116)
.....+...+. .|++.-|.+.+..++..+|++..+....+.++.++|.
T Consensus 72 ~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445555455 6777777777777777777777777777777666654
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=0.48 Score=26.93 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
.+.-.+|..-++ .|++.+|.+.|..... +...|....+.+.+.
T Consensus 168 sArEALglAa~k-agd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 168 SAREALGLAAYK-AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHhHHHHh-ccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 345556666666 6888888888877665 333344444444443
No 350
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.36 E-value=0.74 Score=30.19 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 93 (116)
-+..-++.+|.+...|+.+..-+..++.+++-.+.|.+.....|--+.+|...-.--+. .+++......+.+++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhh
Confidence 46667888999999999999999999999999999999999888877777654333334 477777777777777653
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.51 Score=26.82 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=72.4
Q ss_pred hcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CH--HHHHHHHHHHHHhcCCHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NA--SLYVHRAMLMLQARGNVDE 81 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~--~~~~~~~~~~~~~~~~~~~ 81 (116)
+..++|+..|...-+..-.+ .-+.+..+.+....|+...|+..|..+-...|- .. .+...-+.++.. .|.|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD-~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD-NGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc-cccHHH
Confidence 44566666666665554444 235677888889999999999999987765432 22 244555666555 799988
Q ss_pred HHHHHHHHH-hcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719 82 AIKLIEKAI-SIDKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 82 a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
-..-.+..- ..+|-...+...||..-.+.|++.+|
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A 186 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA 186 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH
Confidence 776665432 22444466777888888888887653
No 352
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=94.27 E-value=0.12 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
|..+-..+.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455556666666666665544
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.24 E-value=0.19 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
+.++..|.. .|+.+.|.+.+++.+..
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHHc
Confidence 578899888 99999999999999954
No 354
>KOG2041|consensus
Probab=94.11 E-value=0.41 Score=33.02 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhc----------------------cCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIR----------------------VDPENASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
.+++..+|..+..+..|.+|.++|.+.-. .-|++...+-.+|.++.. .|.-++|.+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s-vGMC~qAV~a 874 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS-VGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh-hchHHHHHHH
Confidence 35888999999999999999998876422 226666666677777555 7887877777
Q ss_pred HHH
Q psy12719 86 IEK 88 (116)
Q Consensus 86 ~~~ 88 (116)
+.+
T Consensus 875 ~Lr 877 (1189)
T KOG2041|consen 875 YLR 877 (1189)
T ss_pred HHh
Confidence 654
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.00 E-value=0.71 Score=27.46 Aligned_cols=71 Identities=18% Similarity=0.037 Sum_probs=48.5
Q ss_pred ChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhh
Q psy12719 43 DFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQR 110 (116)
Q Consensus 43 ~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 110 (116)
.....++.+.++....... ......+|.-|+. .|++++|.+.++.+....... ..+...+..|....
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3345566666666543321 3356688999888 899999999999996553321 45667778888888
Q ss_pred cccc
Q psy12719 111 TFVV 114 (116)
Q Consensus 111 ~~~~ 114 (116)
|+.+
T Consensus 232 ~~~~ 235 (247)
T PF11817_consen 232 GDVE 235 (247)
T ss_pred CCHH
Confidence 8765
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.88 E-value=0.11 Score=34.06 Aligned_cols=92 Identities=8% Similarity=-0.016 Sum_probs=63.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
....|+|+.+...+..+-..-.....+...+-...+..+++++|.......+...-..+.+....+...-. +|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADA-LQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHH-HhHHHHHH
Confidence 34567888887777665444333334444555666789999999998888887666666655544444334 78889999
Q ss_pred HHHHHHHhcCCCc
Q psy12719 84 KLIEKAISIDKSC 96 (116)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (116)
-++++.+.++|..
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 9999999888754
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.79 E-value=1.2 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
+++..|..+|.....+|+++-|.++|.++-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 345577777777777777777777776653
No 358
>KOG1839|consensus
Probab=93.67 E-value=0.6 Score=34.01 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=68.7
Q ss_pred HHHHH-HhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 16 EFRNF-VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
.+... -...|+....+..++.++...++.++|+..-.++.-+. |+....+.+++...+. .++...|...+
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~~al~~~ 1038 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLSGALKSL 1038 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCccchhhhH
Confidence 55522 33457788899999999999999999999988876543 3445678888887776 78888888888
Q ss_pred HHHHhc--------CCCcHHHHHHHHHHHHhhccc
Q psy12719 87 EKAISI--------DKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 87 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 113 (116)
.++... .|.......+++.++...+++
T Consensus 1039 ~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1039 NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 888764 344444445566555544444
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.57 E-value=1.8 Score=30.57 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=72.9
Q ss_pred chhcHHHHHHHHHHHHhhCCC--h-------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSN--V-------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAML 71 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~ 71 (116)
...++.+|..++.+....-|. . ....-..|.+....|++++|....+.++..-|.+ ..++...|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 356788888888877665443 1 2233456777788999999999999999887765 3467778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC----cHH--HHHHHHHHHHhhc
Q psy12719 72 MLQARGNVDEAIKLIEKAISIDKS----CMF--AYETLGTIEVQRT 111 (116)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~--~~~~l~~~~~~~~ 111 (116)
..- .|++++|..+...+.+.... .-. +....+.+...+|
T Consensus 507 ~~~-~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 507 AHI-RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHH-hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 655 89999999999888776322 222 2333455555555
No 360
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.56 E-value=0.18 Score=32.23 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=39.4
Q ss_pred cchhcHHHHHHHHHHHHhhC---------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 5 GDRERVEQSLKEFRNFVDTH---------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
.-.|||..|++.++..- .+ +-+..+++..|.+|+-.++|.+|+..|...+.
T Consensus 133 ~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 133 CLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999988876642 22 22345788999999999999999999998764
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.52 E-value=0.24 Score=30.38 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=44.5
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 54 (116)
|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.+...|++.
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 456788999999999999999999999999999999999987777777653
No 362
>KOG3617|consensus
Probab=93.46 E-value=1 Score=31.91 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=60.2
Q ss_pred chhcHHHHHHHHHHH----------HhhCCCh----------hHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------
Q psy12719 6 DRERVEQSLKEFRNF----------VDTHSNV----------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------- 58 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~----------~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 58 (116)
..++.+.|+++|+++ +..+|.. ...|..-|......|+.+.|+.+|..+-...
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 346677788888764 2333432 3356677888888999999999998864321
Q ss_pred --------------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719 59 --------------PENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 59 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 91 (116)
..+..+-|.+|..|-. .|+..+|+..|.++-.
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 2345577889998666 8999999988877644
No 363
>KOG1839|consensus
Probab=93.31 E-value=0.36 Score=35.04 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=79.0
Q ss_pred cccchhcHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 66 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~ 66 (116)
++...+++++|+..-.++.-.. |+....+..++...+..+....|...+.++... .|.-.....
T Consensus 982 l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~ 1061 (1236)
T KOG1839|consen 982 LSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFI 1061 (1236)
T ss_pred HHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhh
Confidence 3456778888888776665433 444567888888888888998999888887643 344455667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHhhcccc
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKAISIDKS--------CMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~ 114 (116)
+++.+++. .++++.|+++++.+...+.. ....+..+++.....+++.
T Consensus 1062 nle~l~~~-v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1062 NLELLLLG-VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 78887655 79999999999999886322 2445666777776666654
No 364
>KOG3807|consensus
Probab=93.21 E-value=1.3 Score=27.93 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-----------------------CCHH--
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-----------------------ENAS-- 63 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~~~~-- 63 (116)
+..+-++....+++++|+++.++..++.- ..--..+|...++++++... .+..
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 34455667778889999988888777653 23344566666666554320 1112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719 64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94 (116)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 94 (116)
+-..++.|.-+ +|+..+|++.++...+..|
T Consensus 277 IKRRLAMCARk-lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARK-LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence 23457777544 8999999999998887777
No 365
>KOG2422|consensus
Probab=93.15 E-value=1.8 Score=29.24 Aligned_cols=101 Identities=24% Similarity=0.249 Sum_probs=67.3
Q ss_pred cchhcHHHHHHHHHHHHhhC------------CChhHHHHHHHHHHHhhcChhhHHHHHHHHh-------c--cC-----
Q psy12719 5 GDRERVEQSLKEFRNFVDTH------------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSI-------R--VD----- 58 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-------~--~~----- 58 (116)
.....|+++...|.-++... |-+.+.+..++.++..+|+.+.|.....+++ . ..
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34567888888888877654 5556788999999999999988877776664 1 11
Q ss_pred -------CCCHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Q psy12719 59 -------PENASLYV---HRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFAYETLGTI 106 (116)
Q Consensus 59 -------~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 106 (116)
|.+...+. ..-.. +...|-+..|.++.+-.++++|. +|.+...+..+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~-l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~ 386 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQS-LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI 386 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence 22222211 11111 12379999999999999999998 66544443333
No 366
>KOG0985|consensus
Probab=92.88 E-value=2.8 Score=30.71 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 93 (116)
+.+.+|..+|....+.+...+|++.|-++ +++..+.......-+ .|.+++-+.++..+.+..
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999553 566677777777555 899999999998887653
No 367
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=92.87 E-value=1.5 Score=27.68 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=42.7
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 54 (116)
.....-+|+-+++.++...|.+......+..+|...|-...|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3455678889999999999999999999999999999999999988653
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.54 E-value=0.65 Score=22.56 Aligned_cols=48 Identities=8% Similarity=0.204 Sum_probs=28.6
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHH---HHHHHHHHHhhcChhhHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEA---CTLFAQVLVDQEDFDGAEEYFNR 53 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~ 53 (116)
.+.+.++|+..+.++++..++.++- +..+..+++..|++.+++.+-.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655443 33344455666666666655443
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.44 E-value=1.2 Score=25.34 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.3
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 59 (116)
...+..++..++.++..|+ +.++..++.++...|+.++|.....++....|
T Consensus 125 ~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445556667777777775 67778888999999999999999999998888
No 370
>KOG3783|consensus
Probab=92.34 E-value=2.3 Score=28.40 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEK 88 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~ 88 (116)
....+.+.......|+++...+..+..+...|+.+.|+.+++.++...-+. .-.++.++.++.. +.++.+|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH
Confidence 344455566667788888888888999999999889999999888711111 2256788888777 7899999999988
Q ss_pred HHhcCCCcHHHHHHHH
Q psy12719 89 AISIDKSCMFAYETLG 104 (116)
Q Consensus 89 ~~~~~~~~~~~~~~l~ 104 (116)
..+.+.=+...|..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 8777655555555555
No 371
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.98 E-value=1.2 Score=24.29 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 74 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 74 (116)
.+.....+...+..|++.-|.+..+.++..+|++..+...++.++.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34556778888899999999999999999999999988888888544
No 372
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=91.74 E-value=0.39 Score=18.31 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.1
Q ss_pred HHHHHHHhhcChhhHHHHHHHHh
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
.+-..+.+.|++++|...|.+..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555555543
No 373
>KOG2908|consensus
Probab=91.45 E-value=2.4 Score=26.76 Aligned_cols=89 Identities=8% Similarity=0.080 Sum_probs=60.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCC----hh--HHHHHHHHHHHhhcChhhHHHHHHHHhc-------cCCCCHHHHHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN----VV--EACTLFAQVLVDQEDFDGAEEYFNRSIR-------VDPENASLYVHRAML 71 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~ 71 (116)
.+.++.++|++++++.++.-.. ++ ......|.++...|+..++.+.+...-+ ..|.--..++.++.-
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 3456889999999988765311 12 2445678888899999888877766543 223233457778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q psy12719 72 MLQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~ 93 (116)
|++..|++...-....+.+...
T Consensus 166 Yyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHhHHHHHHHHHHHhccc
Confidence 8887888887776666665543
No 374
>PF13041 PPR_2: PPR repeat family
Probab=91.41 E-value=0.62 Score=19.97 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.37 E-value=3.9 Score=29.10 Aligned_cols=88 Identities=24% Similarity=0.189 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--N-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-- 96 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 96 (116)
+..-...+.......++.+|.....++...-|. . ....-..|.+... .|++++++...+.++..-|..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccccc
Confidence 344556677777899999999998887765444 1 2233345555556 799999999999999987754
Q ss_pred ---HHHHHHHHHHHHhhcccccC
Q psy12719 97 ---MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 97 ---~~~~~~l~~~~~~~~~~~~a 116 (116)
..+...++.+..-.|++++|
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~A 516 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQA 516 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHH
Confidence 45667777777777777653
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.37 E-value=2.8 Score=27.44 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 91 (116)
.+++..|..+|...+. .|+++-|+++++++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhcC
Confidence 3567899999999888 8999999999987643
No 377
>KOG0546|consensus
Probab=91.34 E-value=0.54 Score=29.50 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=51.3
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
.+.+..|+..-..+++.++....+++..+..+....++++|.+.+..+....|.+....-.+...
T Consensus 288 ~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34455555555556667777788999999999999999999999999999999998766555444
No 378
>KOG4151|consensus
Probab=91.10 E-value=2.1 Score=29.74 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=68.9
Q ss_pred chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHH--hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLV--DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 79 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
+.+++..+.--|..++..-|.+ .....+.+.+++ ..+++..++.-..-++...|....++...+.+|.. .+.+
T Consensus 65 ~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a-l~k~ 143 (748)
T KOG4151|consen 65 QKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA-LNKL 143 (748)
T ss_pred hhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-HHHH
Confidence 3455666655566666666633 233444555444 67889999999999999999999999999999776 7888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHH
Q psy12719 80 DEAIKLIEKAISIDKSCMFAYE 101 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~ 101 (116)
+-|++.+.-.....|+.+.+-.
T Consensus 144 d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 144 DLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHhcCCCCcchHHH
Confidence 9999997777778888754433
No 379
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.93 E-value=2.5 Score=26.11 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 91 (116)
......|...+.+..+.|.++-|...+.++...++. .+.+.+..+..+.. .|+..+|+..++..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 344678899999999999999999999999886532 46677888888777 8999999999988887
No 380
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.57 E-value=0.8 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHH-------hccCCCCHH
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRS-------IRVDPENAS 63 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~ 63 (116)
+...|.-+-..|++.+|+.+|+.+ +...|+++.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 344455555666666666555554 444566654
No 381
>KOG1464|consensus
Probab=90.33 E-value=2 Score=26.39 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=41.2
Q ss_pred hcHHHHHHHHHHHHhhCCChh----HHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
.+.++|+..|++.+++.|.-. .++..+-.+.++.+++++.++.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 468899999999999987754 3667788899999999999999988764
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.13 E-value=4.4 Score=27.63 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=60.3
Q ss_pred cchhcHHHHHHHHHHHHhhCCC--hhH----HHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHH--HHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN--VVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRA--MLM 72 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~--~~~ 72 (116)
....+++.|+.++++++.+... ..+ +...++.++.+.+... |...+++.++.... .+...+.+- ...
T Consensus 71 ~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 71 EETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4567899999999999888743 222 3456678887777776 99999999876544 222223332 222
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q psy12719 73 LQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~ 93 (116)
.. .+++..|.+.++......
T Consensus 150 ~~-~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 150 LQ-HKDYNAALENLQSIAQLA 169 (608)
T ss_pred Hh-cccHHHHHHHHHHHHHHh
Confidence 23 379999999999888764
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=89.92 E-value=1.8 Score=22.94 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhCCCh---------hHHHHHHHHHHHhhcChhhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719 12 QSLKEFRNFVDTHSNV---------VEACTLFAQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVD 80 (116)
Q Consensus 12 ~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
.-...+++++....++ ..+|..++. ...++.+.|..+.. +....+..|...|..+.. .|++.
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~ 116 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFK 116 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHH
Confidence 3345666666555333 223444433 22378888877765 456778888889998776 89999
Q ss_pred HHHHHHHHHH
Q psy12719 81 EAIKLIEKAI 90 (116)
Q Consensus 81 ~a~~~~~~~~ 90 (116)
+|.+.++.++
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999998875
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.89 E-value=2.8 Score=24.95 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q psy12719 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIE 107 (116)
Q Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 107 (116)
-+.+.+..++++...+.-++-.|.+......+-..++- .|++++|...++-+-.+.|++ ...|..+-.+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 34567888899999998899999888877777777676 799999999998888888876 34455555444
No 385
>KOG0985|consensus
Probab=89.84 E-value=5.7 Score=29.33 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 60 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
+.+.+|..+|.+.++ .+...+|++.|-++ ++|..+.....+..+.|.++
T Consensus 1102 n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence 457789999999888 89999999988655 34444555555544444443
No 386
>KOG2114|consensus
Probab=89.51 E-value=4 Score=28.97 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
...+..+|..+++.|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 457788999999999999999999988864
No 387
>KOG0276|consensus
Probab=89.39 E-value=3.1 Score=28.47 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHH------------HHHHHHHHHHHhcCCHHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENAS------------LYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
++..-|..+|......+++..|.+++.++-... ..+.. -..+++...+...|+++++.+.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 445568899999999999999999998875432 11222 1233443333337888888777
Q ss_pred HHHH
Q psy12719 86 IEKA 89 (116)
Q Consensus 86 ~~~~ 89 (116)
+.+.
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 6544
No 388
>KOG3783|consensus
Probab=89.30 E-value=4.9 Score=26.97 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhcc---CC----CCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRV---DP----ENASLYVHRAMLMLQARGN-VDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~----~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 96 (116)
.++.+|.++...|+...|..+|...... .. -.|-++|.+|..+.. ++. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhcccc
Confidence 4677899999999999999999887732 11 226789999999888 566 999999999998877554
No 389
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=89.27 E-value=0.75 Score=17.54 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
|..+-..+.+.|+++.|...++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666665443
No 390
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.20 E-value=2.4 Score=23.15 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=39.1
Q ss_pred HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93 (116)
Q Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 93 (116)
....+|+-+.--+.++...+....++..+..+|.+|-+ .|+..++-+.+.++-+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHhc
Confidence 34567777777777777777677789999999999766 899999999999987754
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.07 E-value=3.5 Score=24.91 Aligned_cols=67 Identities=27% Similarity=0.328 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHH----------------hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRS----------------IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 89 (116)
++++.+..+|..+.+.+++.+|..+|-.. ..-.|.....+..++...+--.++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56789999999999999999998777332 12345566677777766665579999998877666
Q ss_pred Hhc
Q psy12719 90 ISI 92 (116)
Q Consensus 90 ~~~ 92 (116)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 392
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=88.93 E-value=0.85 Score=17.70 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHh
Q psy12719 78 NVDEAIKLIEKAIS 91 (116)
Q Consensus 78 ~~~~a~~~~~~~~~ 91 (116)
+..+|..+++++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 393
>KOG3807|consensus
Probab=88.28 E-value=4.9 Score=25.62 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.6
Q ss_pred HHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------
Q psy12719 36 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--------------------- 94 (116)
Q Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------- 94 (116)
+...+..+..+-++....++.++|..+.++..++.- . ..-..+|.+.++++++...
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--E-a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--E-ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--h-hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 333456667777888889999999999999888764 2 3455667777777765311
Q ss_pred Cc----HHHHHHHHHHHHhhcccccC
Q psy12719 95 SC----MFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 95 ~~----~~~~~~l~~~~~~~~~~~~a 116 (116)
.+ ......++.|..++|+..+|
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHH
Confidence 01 22345678888888877653
No 394
>KOG0276|consensus
Probab=88.27 E-value=6.5 Score=27.10 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89 (116)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 89 (116)
|-+...+.++++...++... .+.+ ..+.|+++.|.....+ .++..-|-.+|...+. .+++..|.+++.++
T Consensus 623 Fle~~g~~e~AL~~s~D~d~-rFel---al~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDPDQ-RFEL---ALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALS-AGELPLASECFLRA 692 (794)
T ss_pred HhhhccchHhhhhcCCChhh-hhhh---hhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhh-cccchhHHHHHHhh
Confidence 33444455556655554321 2222 2356666666554433 3566779999999887 89999999999998
Q ss_pred Hhc--------CCCcHHHHHHHHHHHHhhcc
Q psy12719 90 ISI--------DKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 90 ~~~--------~~~~~~~~~~l~~~~~~~~~ 112 (116)
... ..++.+.+..+|.....+|+
T Consensus 693 ~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 693 RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred cchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 765 22444555555555444443
No 395
>KOG2581|consensus
Probab=88.19 E-value=1.4 Score=28.46 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=34.8
Q ss_pred hhcHHHHHHHHHHHHhhC--C--ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719 7 RERVEQSLKEFRNFVDTH--S--NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (116)
.+.|+.|.....+..--. . ..++..+.+|.+..-+.+|..|.+++-+|+...|++
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 345566655555543111 1 124456677888888888888888888888888764
No 396
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.10 E-value=6.5 Score=26.83 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
.++...+..+..+-.-+..+.|-.+|++.+..+|+ ..++..+..+++ .|-...|...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (578)
T PRK15490 40 LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH
Confidence 34555666777888889999999999999999988 455666666566 677777777766
No 397
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=88.00 E-value=1.1 Score=17.73 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFA 35 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ 35 (116)
+++.|..+|++.+...|+ +..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 456666666666666554 44455444
No 398
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=87.93 E-value=2.4 Score=22.46 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=12.2
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
+|..+...|++++|..+|-.|+...|+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444
No 399
>KOG0890|consensus
Probab=87.78 E-value=13 Score=29.90 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
..+.|...|++....|+++.|..+.-.|.+.. -+.++...|..+.. .|+-..|+..+++.++.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSK 1731 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHh
Confidence 36799999999999999999999998887765 66788899999888 89999999999999965
No 400
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=87.56 E-value=4.8 Score=24.70 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHHHHHHhhc----------------------ChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719 12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQE----------------------DFDGAEEYFNRSIRVDPENASLYVHRA 69 (116)
Q Consensus 12 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~ 69 (116)
...+.++.-++.+|++..++..+|..+.... -.+.|...+.+++.++|+...+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4567778888999999988888888776421 346778888999999999988777666
Q ss_pred HHHHHhcCCHH
Q psy12719 70 MLMLQARGNVD 80 (116)
Q Consensus 70 ~~~~~~~~~~~ 80 (116)
.+.-. .|.++
T Consensus 141 ~~s~~-fgeP~ 150 (277)
T PF13226_consen 141 NISAY-FGEPD 150 (277)
T ss_pred HHHhh-cCCch
Confidence 55333 45443
No 401
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.30 E-value=9.3 Score=27.79 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 63 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 63 (116)
.+.+|+..|++. .-.|.-+-=+.+.|.+|.+.|++++-++++.-+++..|+.|.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 466666666653 233555666888999999999999999999999999988765
No 402
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=4.5 Score=24.96 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh--cChhhHHHHHHHHhccCCCCHHHHHHHHHHH------HHhcCCHHH
Q psy12719 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDE 81 (116)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 81 (116)
++.-++.+..+++.+|.+-.+|.-.-.++..- ..+..-....++.+..++++-..|..+-.+. .. -..+..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k~ 168 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLKH 168 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHHH
Confidence 34456778888888999988877766655433 5577777888899999999987766444332 11 223344
Q ss_pred HHHHHHHHHhcCCCcHHHHHHH
Q psy12719 82 AIKLIEKAISIDKSCMFAYETL 103 (116)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~l 103 (116)
-.++-...+..++.+..+|...
T Consensus 169 e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 169 ELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHhHHHHHhhCCCChHHHHHH
Confidence 4666677788888888888776
No 403
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.23 E-value=6.8 Score=26.11 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=28.9
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
+..+|++..|-.+|+-.+..+|+++..-...-..+...++-..|...|++++.
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 34455556666666666666666554433344444455555666666665543
No 404
>KOG0890|consensus
Probab=87.05 E-value=5.8 Score=31.54 Aligned_cols=81 Identities=4% Similarity=-0.059 Sum_probs=40.4
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 84 (116)
...|+|..|..+|++++..+|+....+.+.-......+.+...+-..+-.....++...-+..++.-.--..++++.-.+
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 34566666666666666666665544444445555555555555555544444444444444443321111444444443
Q ss_pred H
Q psy12719 85 L 85 (116)
Q Consensus 85 ~ 85 (116)
.
T Consensus 1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred h
Confidence 3
No 405
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.96 E-value=2.1 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHhhcChhhHHHHHHHHh
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
..|.-.-..|++++|+.+|..++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445666666666666655
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=86.71 E-value=2.4 Score=25.22 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 44 FDGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 44 ~~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.+.|...|++|+. +.|.+|. ...+.+..++...|+.++|++..++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3567777877764 3566654 45677777788899999999998888764
No 407
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.96 E-value=8.9 Score=26.26 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhCCCh----hHHHHHHHHHHH-hhcChhhHHHHHHHHhccCCC--CH----HHHHHHHHHHHHhcCCH
Q psy12719 11 EQSLKEFRNFVDTHSNV----VEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPE--NA----SLYVHRAMLMLQARGNV 79 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~~~~~~~~~~~~~ 79 (116)
..|+.+++-+++..+-. ..+++.+|.++. ...+++.|..++.+++.+..+ .. .+.+.++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 45677777777433222 457888999877 789999999999999877643 22 234566777555 4444
Q ss_pred HHHHHHHHHHHhcCCC
Q psy12719 80 DEAIKLIEKAISIDKS 95 (116)
Q Consensus 80 ~~a~~~~~~~~~~~~~ 95 (116)
. |...+.+.++...+
T Consensus 117 ~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET 131 (608)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 4 99999998876544
No 408
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.77 E-value=1.8 Score=20.80 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=9.3
Q ss_pred hcChhhHHHHHHHHhc
Q psy12719 41 QEDFDGAEEYFNRSIR 56 (116)
Q Consensus 41 ~~~~~~A~~~~~~a~~ 56 (116)
.|++++|..+|..++.
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3666666666655543
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.29 E-value=7.5 Score=24.78 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVDEAIKLI 86 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 86 (116)
+|..-..+|.......|+ +.+-.+.+.......-...+....+...... ...-..+...|..+.+ +|+.++|...|
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ay 388 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARAAY 388 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHHHH
Confidence 344444444444444433 3344455555444444455555554443321 1222345667777555 99999999999
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q psy12719 87 EKAISIDKSCMFAYETLGT 105 (116)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ 105 (116)
++++.+.++..+..+....
T Consensus 389 drAi~La~~~aer~~l~~r 407 (415)
T COG4941 389 DRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 9999998887665544443
No 410
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=85.04 E-value=3.7 Score=21.08 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF 112 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (116)
....|...+. .|++..|.+.+.++-+..+..+-.+..-+.+-..+||
T Consensus 62 al~~Gl~al~-~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALA-EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3455666566 7888888888888876655555445555555555543
No 411
>KOG3616|consensus
Probab=84.99 E-value=12 Score=26.85 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEV 108 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~ 108 (116)
.+...+.-|...|+|+-|.+.|.++=.. .....+|-+ .|++++|.+.-.++. .|.. ...+...+.-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k-~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGK-AGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhc-cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 3455667777777777777777554211 111222223 566666655554442 2322 233444444455
Q ss_pred hhccccc
Q psy12719 109 QRTFVVL 115 (116)
Q Consensus 109 ~~~~~~~ 115 (116)
.+|++.+
T Consensus 836 ehgkf~e 842 (1636)
T KOG3616|consen 836 EHGKFAE 842 (1636)
T ss_pred hhcchhh
Confidence 5555544
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=84.53 E-value=2.7 Score=24.15 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=30.1
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
....++.+.|.+++|.+.+++... +|++......+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 345578899999999999999998 88877666666655
No 413
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=84.34 E-value=1.9 Score=17.06 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy12719 79 VDEAIKLIEKAI 90 (116)
Q Consensus 79 ~~~a~~~~~~~~ 90 (116)
+++|..+++++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 444555554443
No 414
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=83.94 E-value=7.2 Score=23.47 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 44 FDGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 44 ~~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.+.|...|+.|.. +.|.+|. ...+.+..++...++.++|++..++++..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577888888765 4466654 45677788888899999999888777654
No 415
>KOG2422|consensus
Probab=83.74 E-value=12 Score=25.74 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=56.1
Q ss_pred cchhcHHHHHHHHHHHHhhCCC-hhHHHHHHHHHH-HhhcChhhHHHHHHHHh-----ccCCCCHHHHHHHHHHHHHhcC
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVL-VDQEDFDGAEEYFNRSI-----RVDPENASLYVHRAMLMLQARG 77 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~ 77 (116)
.+.|.+..|.++.+-.+.++|. ++-+...+-.+| .+..+|+=-++.++..- ..-|+.+ .-..++..++....
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNE 431 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCC
Confidence 4568899999999999999998 665544444444 46666766666655542 2233322 23344555444222
Q ss_pred --CHHHHHHHHHHHHhcCCC
Q psy12719 78 --NVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 78 --~~~~a~~~~~~~~~~~~~ 95 (116)
....|...+.+|+...|.
T Consensus 432 ~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 432 EDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhhHHHHHHHHHHHHHhCcH
Confidence 256777888888888773
No 416
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=82.66 E-value=6.2 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhc
Q psy12719 79 VDEAIKLIEKAISI 92 (116)
Q Consensus 79 ~~~a~~~~~~~~~~ 92 (116)
|.+|...+.+|-..
T Consensus 378 Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 378 YKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 55566666655443
No 417
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.53 E-value=6.1 Score=21.64 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=56.0
Q ss_pred hhcHHHHHHHHHHHHhhCCChh------------------HHHHHHHHHH--HhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVV------------------EACTLFAQVL--VDQEDFDGAEEYFNRSIRVDPENASLYV 66 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 66 (116)
.|..++..+...+.+...+-.. .++-.+|..+ ...|+....+.++-. .+..+. +.
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~---~n~~se--~v 89 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAK---RNKLSE--YV 89 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHH---TT---H--HH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHH---hcchHH--HH
Confidence 3566777777777776654321 1222334332 246677777777754 333333 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719 67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115 (116)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (116)
.++.-.+-.+|.-++-.+.+......+..+|..+..+|.+|...|+..+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~ 138 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTRE 138 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhh
Confidence 4444334337888887788887776666778899999999999887654
No 418
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.29 E-value=4.2 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=14.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
..|.-.-..|++++|+.+|..++.
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444466777777777766654
No 419
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.90 E-value=4 Score=19.69 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=10.4
Q ss_pred HHHHhhcChhhHHHHHHHHh
Q psy12719 36 QVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 36 ~~~~~~~~~~~A~~~~~~a~ 55 (116)
.-.-..|++++|+.+|..++
T Consensus 14 ve~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 14 VELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33345556655555555544
No 420
>KOG2041|consensus
Probab=81.67 E-value=14 Score=26.27 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=38.8
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKL 85 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~ 85 (116)
|+|++|++.|-.+-+. +. --.+....|+|-...+.++..-.-+.+. ..++.++|..+.. +..+++|.++
T Consensus 748 g~feeaek~yld~drr---DL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~-~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---DL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE-MMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchh---hh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5666666666443221 11 1123445666666665555433222222 4567777777555 6677777766
Q ss_pred HHHH
Q psy12719 86 IEKA 89 (116)
Q Consensus 86 ~~~~ 89 (116)
|...
T Consensus 819 Y~~~ 822 (1189)
T KOG2041|consen 819 YSYC 822 (1189)
T ss_pred HHhc
Confidence 6544
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.59 E-value=9.5 Score=24.21 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=40.8
Q ss_pred hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89 (116)
Q Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 89 (116)
....-+|+..++.++..+|.+......+..+|.. .|-.+.|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence 3445688888899999999999999999999887 89999999888543
No 422
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=81.37 E-value=6.3 Score=20.95 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (116)
..+|..+.. .|+++++...|-+++...|.-...+.
T Consensus 67 V~lGE~L~~-~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 67 VQLGEQLLA-QGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 468888777 79999999999999999887654443
No 423
>KOG4279|consensus
Probab=81.05 E-value=18 Score=26.01 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=57.2
Q ss_pred ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCC--------CCHHHHHH----HHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDP--------ENASLYVH----RAM 70 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~--------~~~~~~~~----~~~ 70 (116)
|.+.+..+.|+++|.++.+..|.... -.+++.++...| .++...+.-.-...++. ....-|.. ++.
T Consensus 297 ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~a 375 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEA 375 (1226)
T ss_pred CcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhh
Confidence 45667889999999999999987533 234455444433 34444444333332221 11111222 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
. .- .+++.++++..+...++.|-.......+..+
T Consensus 376 s-VL-And~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 376 S-VL-ANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred h-hh-ccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 2 12 5899999999999998887654433344433
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.04 E-value=8.5 Score=22.25 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
.+ .|.+++|.+.+++... +|++......|..+-
T Consensus 122 m~-~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 122 ME-NGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred Hh-cCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 56 8999999999999988 777665555555443
No 425
>KOG0686|consensus
Probab=80.92 E-value=13 Score=24.36 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
.++..+|..|...|+++.|++.|.++-...... ...+.++-.+... .|++..-..+..++.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~-~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIY-MGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh-hcchhhhhhHHHHHHhC
Confidence 467889999999999999999999865554433 3445555555555 67776666665555443
No 426
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=80.81 E-value=16 Score=25.16 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=50.3
Q ss_pred HHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110 (116)
Q Consensus 38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (116)
+.+....+.+....+.-+.....+....+..+..+.. .+..++|-.+|++.+..+|++ .+...+.-+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNNDE--ARYEYARRLYNT 87 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCcc--hHHHHHHHHHhh
Confidence 3456677777777776666666666677777887555 799999999999999999985 344444444433
No 427
>KOG4279|consensus
Probab=80.73 E-value=3.8 Score=29.01 Aligned_cols=57 Identities=16% Similarity=0.319 Sum_probs=44.1
Q ss_pred cchhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHh---------hcChhhHHHHHHHHhccCCCC
Q psy12719 5 GDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~ 61 (116)
...|+-++|+...-.+++.. |..++.++.-|.+|.. .+..+.|+++|+++++..|..
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 45688899998888877655 5557788877887753 456678999999999998864
No 428
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=80.73 E-value=16 Score=25.09 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHH--hhcChhhHHHHHHHHhccC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q psy12719 28 VEACTLFAQVLV--DQEDFDGAEEYFNRSIRVD-----PENASLYVHRAMLMLQARGNVDEAIKLIEKAISI------DK 94 (116)
Q Consensus 28 ~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~ 94 (116)
+.++.++|.+-. ....-..+...|.+++... -.....|..+|..+++ .+++.+|+..+..+-.. ..
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~Vi~~YnY~r 355 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADVIRKYNYSR 355 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHTTSB--G
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHHHHHcccCc
Confidence 556666666543 2333455677777776542 2345677888888888 89999999999888654 34
Q ss_pred CcHHHHHHHHHH
Q psy12719 95 SCMFAYETLGTI 106 (116)
Q Consensus 95 ~~~~~~~~l~~~ 106 (116)
++.+.|..+-.+
T Consensus 356 eDeEiYKEfleI 367 (618)
T PF05053_consen 356 EDEEIYKEFLEI 367 (618)
T ss_dssp GGHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 556666654443
No 429
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=80.57 E-value=3.4 Score=17.43 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=21.5
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhcChhhH
Q psy12719 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA 47 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 47 (116)
.|..++..+|++...+..++..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 35566667777777777777777777766443
No 430
>KOG1464|consensus
Probab=80.55 E-value=11 Score=23.39 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=41.1
Q ss_pred hhcChhhHHHHHHHHhccCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 40 DQEDFDGAEEYFNRSIRVDPENA----SLYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 40 ~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
...+.++|+..|++.+.+.+.-. .++-.+..+.++ ++++++..+.+.+.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 45588999999999999988653 356667777777 89999998888877653
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.88 E-value=7.2 Score=20.73 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHH-HHhccCCCCH-------HHHHHHHHHHHHhcCC
Q psy12719 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN-RSIRVDPENA-------SLYVHRAMLMLQARGN 78 (116)
Q Consensus 7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~~~~~-------~~~~~~~~~~~~~~~~ 78 (116)
.+.....+.+++..+..++.++..+..+..++... +..+.+..+. ..-..+++.. ..|-....++.+ .|+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k-~~~ 97 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKK-DGN 97 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHh-hcC
Confidence 46688889999999988887788888888888654 3445555555 2111111111 012222333222 566
Q ss_pred HHHHHHHHHHH-------Hhc--CCCcHHHHHHHHHHHHh
Q psy12719 79 VDEAIKLIEKA-------ISI--DKSCMFAYETLGTIEVQ 109 (116)
Q Consensus 79 ~~~a~~~~~~~-------~~~--~~~~~~~~~~l~~~~~~ 109 (116)
+.+|++.+-.- ++. .+.++..|..++..+..
T Consensus 98 ~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 98 FKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 66666554332 111 23466777777765543
No 432
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.61 E-value=6.7 Score=20.21 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719 49 EYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101 (116)
Q Consensus 49 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (116)
+.+.++-..+ +-.+-.+-.+|.+|-. .|+.+.+.+.|+.--.++|.+.....
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCccchhHHH
Confidence 3444443333 2334456666776555 67777777777777677776654433
No 433
>KOG0686|consensus
Probab=79.47 E-value=15 Score=24.13 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=58.3
Q ss_pred ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--------CHHHHHHHHHHH
Q psy12719 4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--------NASLYVHRAMLM 72 (116)
Q Consensus 4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~ 72 (116)
|...|+++.|++.|.++-..+... ...+.+.-.+....|+|.....+..++.+.... .+.+.-.-|.+.
T Consensus 160 y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~ 239 (466)
T KOG0686|consen 160 YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLAN 239 (466)
T ss_pred HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHH
Confidence 456789999999999976665443 345666666777889998888888887765200 122334445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q psy12719 73 LQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~ 90 (116)
+. ++.|..|...+-.+.
T Consensus 240 L~-lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 240 LL-LKKYKSAAKYFLLAE 256 (466)
T ss_pred HH-HHHHHHHHHHHHhCC
Confidence 56 678988888886654
No 434
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.40 E-value=17 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (116)
..++.-.+. .|+|.-+.+.+.+++-.+|++..+....+.++.++|--
T Consensus 456 l~la~ea~~-kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq 502 (655)
T COG2015 456 LELAREAFD-KGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ 502 (655)
T ss_pred HHHHHHHHh-cccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhh
Confidence 455555566 79999999999999999999999999999998887743
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=14 Score=23.28 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccC
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 58 (116)
.+++.++|..|.+.++.+.+.+++.+.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6789999999999999999999988776543
No 436
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=78.61 E-value=8.5 Score=20.84 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=10.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHH
Q psy12719 47 AEEYFNRSIRVDPENASLYVHRAM 70 (116)
Q Consensus 47 A~~~~~~a~~~~~~~~~~~~~~~~ 70 (116)
|..+|...+...|+...++..+..
T Consensus 95 Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 95 AEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HHHHHHHHHHH-TT-THHHHHHHH
T ss_pred HHHHHHHHHHHCcchHHHHHHHHH
Confidence 344455555555555554444443
No 437
>KOG0687|consensus
Probab=78.39 E-value=15 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.086 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
.+++...+..|++-|+.+.|.+.+++....
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 568999999999999999999998876654
No 438
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.06 E-value=2.1 Score=20.57 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhCC
Q psy12719 11 EQSLKEFRNFVDTHS 25 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~ 25 (116)
++|+....+++..+.
T Consensus 4 ~kai~Lv~~A~~eD~ 18 (75)
T cd02680 4 ERAHFLVTQAFDEDE 18 (75)
T ss_pred HHHHHHHHHHHHhhH
Confidence 445555555555443
No 439
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=78.03 E-value=7.6 Score=19.95 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG 77 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (116)
.....|.+....|++..|.+...++.+..+..+-.+..-+.+-.. +|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~-~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA-QG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cC
Confidence 345667777889999999999999977755555555555555333 44
No 440
>KOG2581|consensus
Probab=77.81 E-value=17 Score=23.92 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccC--C--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVD--P--ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (116)
..+.+-..|...+.|+.|-....+..--. . ..+...+.+|.+-.- +.+|..|.+++-.++...|.+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcch
Confidence 34455566777788888877776654221 1 225567778888444 899999999999999999975
No 441
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=77.80 E-value=16 Score=23.40 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
..|..++.+....|.+++.+..|+.|+.....
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 35555555555556555666666665555433
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.22 E-value=8.6 Score=20.12 Aligned_cols=75 Identities=5% Similarity=-0.072 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 88 (116)
..++|..+.+-.-.......-+.......++++|+|++| +.........+...|..++. .+ .|--.++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~k-lGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WK-LGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HH-CT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--Hh-hccHHHHHHHHHH
Confidence 456666655544333332344566677788899999999 33333343344455555554 56 8888888888774
Q ss_pred H
Q psy12719 89 A 89 (116)
Q Consensus 89 ~ 89 (116)
.
T Consensus 95 l 95 (116)
T PF09477_consen 95 L 95 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.19 E-value=6.7 Score=18.90 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHh-------cCCCcHHH
Q psy12719 76 RGNVDEAIKLIEKAIS-------IDKSCMFA 99 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~-------~~~~~~~~ 99 (116)
.|++.+|+.+|+++++ ..|+.+.-
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 6776666666666554 46766543
No 444
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.75 E-value=11 Score=23.36 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHHHHH------HhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH---HHHhcCC--
Q psy12719 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVL------VDQEDFDGAEEYFNRSIRVDPENASLYVHRAML---MLQARGN-- 78 (116)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~-- 78 (116)
+..-..+.++.++.+|.+..+|...-.+. ..-..+..-.++-..+|..++.+..+|...-.. .+. .|+
T Consensus 126 ~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~-~~~vi 204 (328)
T COG5536 126 WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN-RGDVI 204 (328)
T ss_pred cchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh-hcccc
Confidence 55556677888888888765553322222 333444555677778889999999988877322 222 233
Q ss_pred ----HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719 79 ----VDEAIKLIEKAISIDKSCMFAYETLGTI 106 (116)
Q Consensus 79 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 106 (116)
+++-++..-.++-.+|++..+|..+..+
T Consensus 205 sqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 205 SQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred hHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 5556666777777789887777765544
No 445
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=75.32 E-value=6.4 Score=25.47 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719 79 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 114 (116)
...|+++++++.. .++|..|..+|.++...|+.-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~ 367 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLY 367 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhccc
Confidence 5566777776655 566778999999998888753
No 446
>KOG2758|consensus
Probab=74.74 E-value=19 Score=22.97 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=49.6
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHH--HhccCCC--CHH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR--SIRVDPE--NAS-LYVHRAMLMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a~~~~~~--~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~ 90 (116)
.+.+-....|+..++.+.++...+..|+|..|-.++-. ++..+|+ ... .|..++.- .- ..+++.|.+.+.+.-
T Consensus 117 ~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASE-IL-~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 117 HLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASE-IL-TQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HH-HhhHHHHHHHHHHHH
Confidence 33333444577788899999999999999999877533 3333332 333 45555543 33 588999998887765
Q ss_pred hc
Q psy12719 91 SI 92 (116)
Q Consensus 91 ~~ 92 (116)
+.
T Consensus 195 e~ 196 (432)
T KOG2758|consen 195 EY 196 (432)
T ss_pred HH
Confidence 53
No 447
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.19 E-value=8.7 Score=18.72 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHhhC
Q psy12719 9 RVEQSLKEFRNFVDTH 24 (116)
Q Consensus 9 ~~~~A~~~~~~~~~~~ 24 (116)
.|+.|.+..++++..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3555555555555443
No 448
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=73.99 E-value=1 Score=30.08 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHh--ccCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSI--RVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEK 88 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 88 (116)
....-+..+...|++..|...+.+.- .+.|. ........+.+.+. .|+++.|.+.+..
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~-~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALA-QGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHh-cCCHHHHHHHhcc
Confidence 44445666777777777777776654 12222 23344455555555 6777777777653
No 449
>KOG3677|consensus
Probab=73.84 E-value=4.9 Score=26.28 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------SLYVHRAMLMLQARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 91 (116)
+.++-+++.-.|+++. -.+.+.++|... .+.+..|.+|+- .++|.+|+..|...+.
T Consensus 238 L~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLm-mrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLM-MRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445556667888555 444455666542 234788888887 8999999998877764
No 450
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.32 E-value=14 Score=25.32 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhC-----CChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 12 QSLKEFRNFVDTH-----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 12 ~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
.++++|.+++... ..+.-.|..+|..+++.+++.+|+..+..+-.
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666542 22344678889999999999999999877643
No 451
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=72.47 E-value=9 Score=18.13 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=8.5
Q ss_pred hhcChhhHHHHHHHHh
Q psy12719 40 DQEDFDGAEEYFNRSI 55 (116)
Q Consensus 40 ~~~~~~~A~~~~~~a~ 55 (116)
..|++++|+.+|..++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3555555555555543
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.37 E-value=21 Score=22.44 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=30.1
Q ss_pred chhcHHHHHHHHHHHHhhCC--------ChhHHHHHHHHHHHhhcChhhH
Q psy12719 6 DRERVEQSLKEFRNFVDTHS--------NVVEACTLFAQVLVDQEDFDGA 47 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A 47 (116)
+.+++++|+..|.+.+.... +.......++.+|...|++..-
T Consensus 15 ~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 15 KSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred hhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 46789999999999886621 1123567888999888877543
No 453
>KOG4014|consensus
Probab=72.15 E-value=17 Score=21.23 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=57.7
Q ss_pred hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-----hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh----cC-
Q psy12719 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV-----DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA----RG- 77 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~- 77 (116)
.+|++|...|..--..+ ..+...+-+|..++ ..++...|++.+..+.. .+++.+-..+|.++... .+
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 34555555555544333 22445555665544 34567889999988877 45666767777765431 12
Q ss_pred -CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719 78 -NVDEAIKLIEKAISIDKSCMFAYETLGTIEV 108 (116)
Q Consensus 78 -~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (116)
+.++|.+++.++....-. .+-+.|...+.
T Consensus 126 pd~~Ka~~y~traCdl~~~--~aCf~LS~m~~ 155 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLEDG--EACFLLSTMYM 155 (248)
T ss_pred CCcHHHHHHHHHhccCCCc--hHHHHHHHHHh
Confidence 377899999988776443 33444544443
No 454
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=71.38 E-value=15 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=16.9
Q ss_pred HHHHHHHhhc-ChhhHHHHHHHHhccCCCCH
Q psy12719 33 LFAQVLVDQE-DFDGAEEYFNRSIRVDPENA 62 (116)
Q Consensus 33 ~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~ 62 (116)
.+|..+...| +.+++..+|-.|+...|+..
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 3555555555 56666666666666555543
No 455
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=71.30 E-value=5.4 Score=15.10 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=11.6
Q ss_pred HHHHHHhccCCCCHHHHHHHHHH
Q psy12719 49 EYFNRSIRVDPENASLYVHRAML 71 (116)
Q Consensus 49 ~~~~~a~~~~~~~~~~~~~~~~~ 71 (116)
+....++..+|.+..+|..+-.+
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHH
Confidence 34445555555555555544433
No 456
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.26 E-value=14 Score=19.68 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
+...+.......+++.++..++.++..+..+..++.+ -+..+..+.+.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHH
Confidence 3456788888999999988887777777777777654 34555555555
No 457
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=70.94 E-value=27 Score=23.05 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=48.5
Q ss_pred cchhcHHHHHHHHHHHHhhCCCh--------hHH--------HHHHHHHHH-hhcCh-----hhH-----HHHHHHHhcc
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNV--------VEA--------CTLFAQVLV-DQEDF-----DGA-----EEYFNRSIRV 57 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~-~~~~~-----~~A-----~~~~~~a~~~ 57 (116)
...|++.+|+..|..++..-|-. .++ -+.+|.... .++.. ++. +..|-..+++
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~L 294 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKL 294 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS--
T ss_pred HhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCC
Confidence 35689999999999988764211 111 112222211 12221 122 1222223344
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12719 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99 (116)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (116)
.|.+...-...|.....+.++|..|....++.+++.|....+
T Consensus 295 Qp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 295 QPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp -HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 444444434444443334899999999999999999876543
No 458
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.37 E-value=26 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=35.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhH--HHHHHHH--HHHhhcChhhHHHHHHHHhc
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVE--ACTLFAQ--VLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 56 (116)
.+.++|..|...+......-|.... .+..++. .+...-++.+|.+.++..+.
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4678899999999998875344333 3333333 33467788888888886654
No 459
>KOG3677|consensus
Probab=69.33 E-value=17 Score=23.99 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (116)
+-+..|.+|.-.++|.+|+..|..++..-.+.....-..+.++-...+..+.-...+.-++...|.
T Consensus 274 VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 274 VTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCch
Confidence 347889999999999999999988764422222222223333223344555555666666666663
No 460
>KOG4563|consensus
Probab=68.89 E-value=16 Score=23.55 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCC--------CCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--------ENASLYVHRAMLMLQARGNVDEAI 83 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~ 83 (116)
-....|+-++.++++++|...|..|..+.. .+..+++..|..++. .++++..+
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLe-la~~e~~V 103 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLE-LAKEESQV 103 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 356788888999999999999999876542 235677778888776 56555443
No 461
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.06 E-value=12 Score=17.79 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHhhcChhhHHHHHHHHh
Q psy12719 37 VLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 37 ~~~~~~~~~~A~~~~~~a~ 55 (116)
-.-..|++++|+.+|.+++
T Consensus 15 ~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 15 EEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3345566666666655554
No 462
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=67.46 E-value=23 Score=20.75 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=34.0
Q ss_pred cchhcHHHHHHHHHHHHhhCCChhHHHHHHH-HHHHhhcChhhHHHHHHHHh
Q psy12719 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~ 55 (116)
...|+++.|-..|--.+...+-+......+| .++.+.+.-....+.++...
T Consensus 52 llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 52 LLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 3468999999999999988776665444554 45555555554445555443
No 463
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=66.18 E-value=16 Score=18.62 Aligned_cols=77 Identities=4% Similarity=0.002 Sum_probs=40.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-cHHHHHHHHHHHHhhc
Q psy12719 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-S-CMFAYETLGTIEVQRT 111 (116)
Q Consensus 34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 111 (116)
-...|+..++++.....+......-...|.+.......... ..+..+|.+.+++...... . -..+|..+-.++.+..
T Consensus 20 As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~f-g~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i~ 98 (100)
T PF08771_consen 20 ASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAF-GRDLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRIK 98 (100)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHHh
Confidence 44556678888888877776654322222222333333222 3455667777776654322 1 2456766666666543
No 464
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=66.14 E-value=13 Score=17.53 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=9.9
Q ss_pred HhhcChhhHHHHHHHHh
Q psy12719 39 VDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 39 ~~~~~~~~A~~~~~~a~ 55 (116)
-..|++++|+.+|..++
T Consensus 17 D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 17 DEDGNYEEALELYKEAL 33 (75)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34466666666665554
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.62 E-value=34 Score=22.14 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHhccCCCCH--HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q psy12719 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA--SLYVHRAMLMLQA-RGNVDEAIKLIEKAISI 92 (116)
Q Consensus 31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~ 92 (116)
....+...++.++|..|...+..+...-|... ..+..+...|..+ .-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677899999999999999988533333 3444554443322 67899999999877754
No 466
>KOG2034|consensus
Probab=65.37 E-value=7.5 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=34.8
Q ss_pred cccchhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719 3 VPGDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 3 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 54 (116)
.|.+.|+|++|+++.... |+. ..++...|..++..++|..|-+.|-+.
T Consensus 367 ~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 456778888877665433 444 237788889999999999888888665
No 467
>KOG3616|consensus
Probab=64.50 E-value=42 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (116)
..+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 345678888888889999999999999999998655
No 468
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.19 E-value=33 Score=21.47 Aligned_cols=84 Identities=7% Similarity=0.115 Sum_probs=53.0
Q ss_pred hcHHHHHHHHHHHHhhCCC----------hhHHH---HHHH-HHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy12719 8 ERVEQSLKEFRNFVDTHSN----------VVEAC---TLFA-QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 73 (116)
Q Consensus 8 ~~~~~A~~~~~~~~~~~~~----------~~~~~---~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 73 (116)
.||..|++..++.++.-.. +.++. +..| +++..+++|.++..+.-+-...-.+-+.-...+..+++
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLy 128 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLY 128 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence 4778888888887654311 11222 2222 24557888888888887776655555666667777666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q psy12719 74 QARGNVDEAIKLIEKAIS 91 (116)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~ 91 (116)
.+.+++....+.-...+.
T Consensus 129 sKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 129 SKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHhcCHHHHHHHHHHHHh
Confidence 657777766666655554
No 469
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.09 E-value=37 Score=21.96 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 69 (116)
...+...|.++.+.|+..+|...|++++.+.++.....+.+.
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 446777899999999999999999999999988776555443
No 470
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.02 E-value=19 Score=18.65 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=38.6
Q ss_pred HHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH
Q psy12719 14 LKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64 (116)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 64 (116)
.+.++++-..+ +..+-.+-.+|.+|.+.|+-+.+..-|+.--.+.|.+...
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444444333 3345678899999999999999999999988889988654
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.93 E-value=48 Score=23.30 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=33.6
Q ss_pred HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 90 (116)
+....++++....++...-..........|-+|..+.. .|+.++|...|+++.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a 373 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence 33466677666666665433333445566777777555 788888888887764
No 472
>KOG4056|consensus
Probab=63.07 E-value=23 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101 (116)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (116)
..+|..++. .|+.+++...+-.++.+.|....++.
T Consensus 85 v~lGE~L~~-qg~~e~ga~h~~nAi~vcgqpaqLL~ 119 (143)
T KOG4056|consen 85 VQLGEELLA-QGNEEEGAEHLANAIVVCGQPAQLLQ 119 (143)
T ss_pred HHhHHHHHH-ccCHHHHHHHHHHHHhhcCCHHHHHH
Confidence 467888777 78999999999999988877654433
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.66 E-value=14 Score=16.84 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=8.3
Q ss_pred HHhhcChhhHHHHHHHH
Q psy12719 38 LVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 38 ~~~~~~~~~A~~~~~~a 54 (116)
+...|++++|.++....
T Consensus 33 llqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 34555555555555443
No 474
>KOG4563|consensus
Probab=62.60 E-value=28 Score=22.55 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHhhcccc
Q psy12719 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRTFVV 114 (116)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~ 114 (116)
+...|..++. +++++.|...+..+..+.. .+..+++..|..+...++..
T Consensus 44 lv~~G~~~~~-~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e 100 (400)
T KOG4563|consen 44 LVQAGRRALC-NNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEE 100 (400)
T ss_pred HHHhhhHHHh-cccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777 8999999999999987632 34677888888887776654
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.39 E-value=17 Score=17.44 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=9.0
Q ss_pred hhcChhhHHHHHHHHh
Q psy12719 40 DQEDFDGAEEYFNRSI 55 (116)
Q Consensus 40 ~~~~~~~A~~~~~~a~ 55 (116)
..|++++|..+|..++
T Consensus 18 ~~g~y~eA~~lY~~al 33 (75)
T cd02684 18 QRGDAAAALSLYCSAL 33 (75)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4556666655555554
No 476
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.59 E-value=38 Score=21.37 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 88 (116)
-..|...-.++...++|++-..... . ..+|-.|.....+.+. .|+..+|..+..+
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~-~~~~~eA~~yI~k 262 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAK-S----KKSPIGYEPFVEACLK-YGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHh-C----CCCCCChHHHHHHHHH-CCCHHHHHHHHHh
Confidence 4567777778888888876555432 1 2344445555555455 6777777777766
No 477
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.57 E-value=21 Score=18.46 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
-+..++..|...|.+++|.+.+.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356788888888888888888887666
No 478
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.45 E-value=16 Score=16.74 Aligned_cols=52 Identities=25% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhccCCCCHH----HHHHH--HHHHHHhcCCHHHHHHH
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENAS----LYVHR--AMLMLQARGNVDEAIKL 85 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~--~~~~~~~~~~~~~a~~~ 85 (116)
..|..++..|+|=+|-++++..-...|.... .+..+ |..+++ .|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~-~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLR-RGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHH-CTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHH-hCCHHHHHHh
Confidence 3456667788888888888888765554321 22233 333334 6777776654
No 479
>KOG0292|consensus
Probab=60.31 E-value=40 Score=24.89 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=35.6
Q ss_pred chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
+-|+.+.|++...+. ++++.|..+|.....+|+.+=|..+|++.-..
T Consensus 655 e~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred hcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 446666666655443 56889999999999999999999999875433
No 480
>KOG1538|consensus
Probab=58.79 E-value=11 Score=26.50 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=25.5
Q ss_pred chhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 54 (116)
+.++|.+|....++ .|+. +++++..|+.+....++.+|.+.|.++
T Consensus 785 e~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 44555555444332 2332 446666777666666676666666554
No 481
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=58.38 E-value=29 Score=20.51 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57 (116)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 57 (116)
+++++..|.+..+.|+..+|+..+.+.-..
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999886543
No 482
>KOG2997|consensus
Probab=58.29 E-value=40 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 66 (116)
.++.-|....+.|..-+|+..|+.|+++.|+....+.
T Consensus 21 ~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 21 ALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 4455566666788899999999999999888766655
No 483
>KOG0292|consensus
Probab=57.71 E-value=77 Score=23.61 Aligned_cols=97 Identities=10% Similarity=0.201 Sum_probs=56.1
Q ss_pred chhcHHHHHHHHHHHHhhCCCh----------hHHHHHHHHHHH------------hhcChhhH--HHHHHHHhccCCCC
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV----------VEACTLFAQVLV------------DQEDFDGA--EEYFNRSIRVDPEN 61 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~------------~~~~~~~A--~~~~~~a~~~~~~~ 61 (116)
..|++.+|++.|..++-.-|-- .+-....+.-|. .......+ +..|-.-..+.|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 4688999999999988665421 112222222221 11223333 23333334555554
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (116)
...-...+...+...+++..|.....+.++..|..+.+...
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 44333334333444899999999999999999977655443
No 484
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=57.62 E-value=17 Score=15.91 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhC
Q psy12719 11 EQSLKEFRNFVDTH 24 (116)
Q Consensus 11 ~~A~~~~~~~~~~~ 24 (116)
+++.+.|.+-+..+
T Consensus 16 q~sve~yk~kl~~~ 29 (57)
T PF04761_consen 16 QESVEFYKEKLSVD 29 (57)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 485
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=54.82 E-value=58 Score=21.35 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHhhcChhhHHHHHHHHhccC-CCC--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719 33 LFAQVLVDQEDFDGAEEYFNRSIRVD-PEN--------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95 (116)
Q Consensus 33 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (116)
.+-.+|++.++++-+...++...... |+. ...+|.+|.+++- ..++-+|.-.+.+++...|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~-~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLL-NENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHH-HHhHHHHHHHHHHHHHhChh
Confidence 34567889999988877766543311 222 3468899999887 78888899999999988776
No 486
>KOG4521|consensus
Probab=53.98 E-value=1e+02 Score=23.84 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIR 56 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~ 56 (116)
..+.+|.+|...|+..+|+.+|.+|..
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhh
Confidence 455667777777777777777777653
No 487
>KOG1497|consensus
Probab=53.93 E-value=57 Score=20.99 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcChhhHHHHHHHHhccC-CCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCCcHHHH
Q psy12719 30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAI--SIDKSCMFAY 100 (116)
Q Consensus 30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 100 (116)
....++.+|.+.++|..|-..+...-... +.. ......+|..|+. .++..+|..+..++- ..+..++...
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe-~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLE-DDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 46678888888888888887775432211 111 2356778888887 788888888776653 2233444443
Q ss_pred HH
Q psy12719 101 ET 102 (116)
Q Consensus 101 ~~ 102 (116)
..
T Consensus 184 ie 185 (399)
T KOG1497|consen 184 IE 185 (399)
T ss_pred HH
Confidence 33
No 488
>KOG2561|consensus
Probab=53.83 E-value=66 Score=21.71 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=49.5
Q ss_pred chhcHHHHHHHHHHHHhhCCCh-----------hHHHHHHHHHHHhhcCh---hhH-------HHHHHHHh--------c
Q psy12719 6 DRERVEQSLKEFRNFVDTHSNV-----------VEACTLFAQVLVDQEDF---DGA-------EEYFNRSI--------R 56 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~A-------~~~~~~a~--------~ 56 (116)
....|++|+.++-.+-+.+..+ +..-..+.++|+..++. ++| .+.|.++. .
T Consensus 175 ~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~ 254 (568)
T KOG2561|consen 175 EREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRS 254 (568)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhh
Confidence 4566888887777665554221 22333456667765543 233 33333321 1
Q ss_pred c-CCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719 57 V-DPENAS------LYVHRAMLMLQARGNVDEAIKLIEKAISI 92 (116)
Q Consensus 57 ~-~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 92 (116)
+ .|.++. .+..-|...|. +|+-++|.+.++.+...
T Consensus 255 lKg~~spEraL~lRL~LLQGV~~yH-qg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 255 LKGGQSPERALILRLELLQGVVAYH-QGQRDEAYEALESAHAK 296 (568)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHH
Confidence 1 133332 34556888777 89999999999888654
No 489
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=53.26 E-value=17 Score=14.61 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy12719 66 VHRAMLMLQ 74 (116)
Q Consensus 66 ~~~~~~~~~ 74 (116)
++++.++.+
T Consensus 5 FnyAw~Lv~ 13 (35)
T PF14852_consen 5 FNYAWGLVK 13 (35)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHhc
Confidence 344444333
No 490
>KOG2034|consensus
Probab=52.85 E-value=27 Score=25.37 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHhhcChhhHHHHHHHHhccCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719 35 AQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYVHRAMLMLQARGNVDEAIKLIEKAI 90 (116)
Q Consensus 35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 90 (116)
=.+|...|+|++|.+..+.. |+.. .++...|..+++ .++|..|.+.|.+..
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~-~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQ-DKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhh
Confidence 36778999999998887543 4443 356777888777 788888888887664
No 491
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=52.58 E-value=15 Score=19.59 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=61.2
Q ss_pred chhcHHHHHHHHHHHHhhCC-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH-------HHHHHHHHHHHhcC
Q psy12719 6 DRERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-------LYVHRAMLMLQARG 77 (116)
Q Consensus 6 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~ 77 (116)
+.+.......+++..+..++ .++..+..+..+|.+.++.++....++..-..++.... .+-....+ +...|
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L-y~~~~ 97 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL-YSKLG 97 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH-HHCCT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH-HHHcc
Confidence 34556666677788876653 44788899999999998878887777643333332211 12222333 33367
Q ss_pred CHHHHHHHHHH------HHhc--CCCcHHHHHHHHHHHHhhccc
Q psy12719 78 NVDEAIKLIEK------AISI--DKSCMFAYETLGTIEVQRTFV 113 (116)
Q Consensus 78 ~~~~a~~~~~~------~~~~--~~~~~~~~~~l~~~~~~~~~~ 113 (116)
++++|+..+.. +++. ..+++.+|..+...+...+..
T Consensus 98 ~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 98 NHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp THTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred cHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 77776653111 1111 223467888888877665543
No 492
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=52.52 E-value=31 Score=17.55 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
++++....-+.-..+.|+|++|.+.+.++-
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555666667888888877776653
No 493
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=51.70 E-value=32 Score=17.43 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=17.6
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRS 54 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 54 (116)
++++....-+.-..+.|++++|...+.++
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33445555556666777777777777665
No 494
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=51.70 E-value=42 Score=19.95 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHh-hcChhhHHHHHHH-Hh-ccCCCCHHHHHHHHHHHHH
Q psy12719 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNR-SI-RVDPENASLYVHRAMLMLQ 74 (116)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~-a~-~~~~~~~~~~~~~~~~~~~ 74 (116)
+++++.-...+..-.....+...-|..|.. ...+.++++-+-. ++ .-+|....++..++.+...
T Consensus 8 ee~l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~E 74 (215)
T cd07642 8 EEALDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKE 74 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Confidence 344444433333334445566666666653 4456666666655 33 2344556667777776444
No 495
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=51.64 E-value=41 Score=18.69 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHH
Q psy12719 66 VHRAMLMLQARG-NVDEAIKLIEKAISIDKSCMFAY 100 (116)
Q Consensus 66 ~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 100 (116)
..+|..+.. .| +.+++...|-+++...|.-..++
T Consensus 94 V~~GE~L~~-~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 94 VQLGEELMA-QGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 467888777 67 99999999999999988754433
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.53 E-value=52 Score=19.76 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719 32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60 (116)
Q Consensus 32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 60 (116)
..++.+....++|++++.+..+++..+|.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 44566666666666666666666666554
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.48 E-value=56 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719 62 ASLYVHRAMLMLQARGNVDEAIKLIE 87 (116)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 87 (116)
+..+..+|..+++ .+++.+|...+-
T Consensus 90 p~LH~~~a~~~~~-e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWK-EGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 5667778888777 688888777764
No 498
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.92 E-value=40 Score=17.96 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHhhcccccC
Q psy12719 81 EAIKLIEKAISI--DKSCMFAYETLGTIEVQRTFVVLW 116 (116)
Q Consensus 81 ~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 116 (116)
.+.+.|...... ....+..|...|..+...|++++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 667777766654 456688888999999999888764
No 499
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=49.74 E-value=36 Score=17.41 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSI 55 (116)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 55 (116)
++++....-+.-..+.|+|++|.+.+..+-
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555566666677888888887776654
No 500
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=49.31 E-value=44 Score=18.28 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719 76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107 (116)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (116)
.-+.+.|...|.+.++.+|+...++..+....
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 45668888889999999998866666555443
Done!