RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12719
(116 letters)
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 86.7 bits (215), Expect = 2e-21
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ + F E FA++L D+ DFD A + ++ +I ++ + +YV
Sbjct: 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411
Query: 68 RAMLMLQAR--------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
A L+ +A N EA L+EKA +D A L +++Q+
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Score = 66.7 bits (163), Expect = 2e-14
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
DR + F + SN Q+ +++D A + F+++ +DPEN Y
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A L D+ L +A I
Sbjct: 342 IQLACL-AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381
Score = 65.1 bits (159), Expect = 7e-14
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A ++ D+ D YF++++++D N+S+Y HR M N D+A K +KA +D
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG-QMNFILQNYDQAGKDFDKAKELDP 335
Query: 95 SCMFAYETLGTI 106
+F Y L +
Sbjct: 336 ENIFPYIQLACL 347
Score = 65.1 bits (159), Expect = 8e-14
Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56
D+ +++LK++ + + E+F A ++ +
Sbjct: 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443
Query: 57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
+DP + + A + + ++DEAI L E++ + ++ + + E +
Sbjct: 444 LDPRSEQAKIGLAQM-KLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKV 497
Score = 62.1 bits (151), Expect = 8e-13
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E+ L + + + + D GA E ++I + P + Y++
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A L++ R + E +KA+ +D + Y G +
Sbjct: 276 MA-LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313
Score = 62.1 bits (151), Expect = 1e-12
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+++ + + + A + + FD E F+ + R PE + A
Sbjct: 328 DKAKELDPENIFPYIQ-------LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA- 379
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+L + + D+A+K + AI ++ Y + +
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415
Score = 53.2 bits (128), Expect = 1e-09
Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
+ +D A +Y+N ++ + + Y + + + G++ + +++ KA+ +
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDY 72
Query: 97 MFAYETLGTI 106
+
Sbjct: 73 SKVLLRRASA 82
Score = 42.4 bits (100), Expect = 7e-06
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89
+ V D E +++ + P+ + + + RA + G +A+ +
Sbjct: 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA-NEGLGKFADAMFDLSVL 99
Score = 39.0 bits (91), Expect = 1e-04
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
AQ+ + QED D A F S + V + I+
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---FAEAAKVQQRIRSDPVLAKK 510
Score = 37.8 bits (88), Expect = 3e-04
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASL-- 64
+++ ++ ++ + + A F A + S+ D +AS+
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ R L QA + E I+ A +
Sbjct: 113 MLERN-LNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Score = 30.9 bits (70), Expect = 0.067
Identities = 8/66 (12%), Positives = 19/66 (28%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
E + +E N + + Y +A +E + + + + +
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240
Query: 101 ETLGTI 106
E G
Sbjct: 241 EHTGIF 246
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 82.1 bits (203), Expect = 9e-20
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ +S F + E T FA++L D+ DFD A + ++ + R++ ++V
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417
Query: 68 RAMLMLQAR---------------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
L+ +A + AIKL+ KA +D A L +++Q
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475
Score = 67.1 bits (164), Expect = 2e-14
Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSN---------VVEACTLFAQVLVDQEDFDGAEE 49
DR + ++K++ H ++ + +D+E F+ A +
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 50 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
++ +DP + + A L +DEAI+L E + + ++ + E
Sbjct: 450 LLTKACELDPRSEQAKIGLAQL-KLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAA 508
Query: 110 RT 111
+
Sbjct: 509 KI 510
Score = 67.1 bits (164), Expect = 2e-14
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+++ V + + A +L Q F +E +FN + P + A
Sbjct: 334 QKAQSLNPENVYPYIQL-------ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA- 385
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116
+L RG+ D AIK + A +++ + +G + + T +
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
Score = 66.3 bits (162), Expect = 3e-14
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L D+E+ ++F +++ ++PE Y HR M + A + +KA S++
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG-QMYFILQDYKNAKEDFQKAQSLNP 341
Query: 95 SCMFAYETLGTI 106
++ Y L +
Sbjct: 342 ENVYPYIQLACL 353
Score = 64.7 bits (158), Expect = 9e-14
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D+E ++ K F+ VD + Q+ +D+ A+E F ++ ++PEN Y
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A L L +G E+ + + I
Sbjct: 348 IQLACL-LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387
Score = 64.0 bits (156), Expect = 2e-13
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ L N A + + A+ SI + P + Y+
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIF 281
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A L L + N E K +KA+ ++ Y G +
Sbjct: 282 LA-LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319
Score = 58.2 bits (141), Expect = 2e-11
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
++F+ A +Y+ +I +DP Y + + + G++++ I+ KA+ I
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDH 92
Query: 97 MFAYETLGTI 106
A +
Sbjct: 93 SKALLRRASA 102
Score = 47.8 bits (114), Expect = 8e-08
Identities = 10/89 (11%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ +++K ++ ++ N + + + D + E+ +++ + P+++
Sbjct: 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ RA ++ GN +A+ +
Sbjct: 97 LRRA-SANESLGNFTDAMFDLSVLSLNGD 124
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D E+ ++K + +A AQ+ + E D A E F S +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + ++ + + + Y G +
Sbjct: 500 QATT---FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
Score = 43.6 bits (103), Expect = 2e-06
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAIS 91
L + ++D A + +++ A L+ ++ +
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237
Query: 92 IDKSCMFAYETLGTI 106
+ ++ A G
Sbjct: 238 LRENAALALCYTGIF 252
Score = 43.6 bits (103), Expect = 3e-06
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLM---LQARGNVDEAIKLIEKAISIDKSCMFA 99
E + + P Y + N +EAIK + AI +D +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 100 YETLGTI 106
Y +
Sbjct: 62 YSNISAC 68
Score = 29.3 bits (66), Expect = 0.23
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAML-------MLQARGNVDEAIKLIEKAISID 93
+ + + R +V P N SL + + N D A L+ A+
Sbjct: 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203
Query: 94 KSCMFAYETLG 104
S +
Sbjct: 204 YSATDEGYLVA 214
Score = 27.0 bits (60), Expect = 1.4
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 77 GNVDEAIKLIEKAISIDKSCMFAY 100
G+ I + + S AY
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAY 24
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 67.8 bits (166), Expect = 2e-15
Identities = 10/101 (9%), Positives = 34/101 (33%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+++ ++ + N V+ A++ V + A + + ++++ +N +
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + ++ K +S +A G
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166
Score = 58.6 bits (142), Expect = 7e-12
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 15/98 (15%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM---------------LM 72
V+ ++ A YF ++I ++ + +Y + L
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ N D+A ++ + + + E ++V R
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Score = 56.7 bits (137), Expect = 3e-11
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPENASL 64
R + + +L+ + + ++ + A E E + + +
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L ++A ++K I S A +TL I
Sbjct: 160 RYRDG-LSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199
Score = 35.5 bits (82), Expect = 0.001
Identities = 7/67 (10%), Positives = 23/67 (34%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E+ ++ L+ + + + + A + ++ A + I P +
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
Query: 68 RAMLMLQ 74
+L ++
Sbjct: 197 DKILRIE 203
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 68.3 bits (168), Expect = 4e-15
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ V ++ + + ++ A + +Q + + A + +++ V PE A+ +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A + LQ +G + EA+ ++AI I + AY +G
Sbjct: 343 SNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Score = 63.7 bits (156), Expect = 2e-13
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+R +++++++ +R+ + + ++ A LV D +GA + + +++ +P+ +
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L L+A G ++EA KAI + A+ LG +
Sbjct: 139 SDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Score = 63.7 bits (156), Expect = 2e-13
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ ++++ + + N A V +Q D A + + R+I + P Y
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A L+ +G+V EA A+ + + + L I
Sbjct: 275 CNLANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Score = 63.3 bits (155), Expect = 3e-13
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
R+++S + + + EA + V ++ A E++ ++R+ P+ Y
Sbjct: 45 QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
++ A L A G+++ A++ A+ + LG +
Sbjct: 105 INLAAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144
Score = 62.9 bits (154), Expect = 4e-13
Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
R+E++ + ++T N A + V Q + A +F +++ +DP Y
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
++ + L+ D A+ +A+S+ + + L +
Sbjct: 207 INLGNV-LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Score = 57.6 bits (140), Expect = 3e-11
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A DF+ AE + + R +P+N + + + + +D + AI +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNP 64
Query: 95 SCMFAYETLGTI 106
AY LG +
Sbjct: 65 LLAEAYSNLGNV 76
Score = 30.6 bits (70), Expect = 0.096
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
G+ + A + + + L +I Q
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 62.7 bits (153), Expect = 3e-13
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 6 DRERVEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56
+++R E++ + N+ V + + A+EYF +S+R
Sbjct: 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENL-------GLVSLQMKKPAQAKEYFEKSLR 169
Query: 57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
++ S+ + A L L A + + + +
Sbjct: 170 LNRNQPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219
Score = 56.1 bits (136), Expect = 8e-11
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
R EQ+ R + D H+ A V + + A+E + +++ D
Sbjct: 49 QRGNTEQAKVPLRKALEIDPSSADAHAA-------LAVVFQTEMEPKLADEEYRKALASD 101
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAI--SIDKSCMFAYETLGTI 106
NA + + L + +EA + + +A ++ +E LG +
Sbjct: 102 SRNARVLNNYGGF-LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150
Score = 52.7 bits (127), Expect = 1e-09
Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ ++ K D + + + + + + A+ +++ +DP +A +
Sbjct: 24 QNPLKTDKGRDEARDAYIQL-------GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA 76
Query: 68 RAMLMLQARGNVDEAIKLIEKAISID 93
A ++ Q A + KA++ D
Sbjct: 77 LA-VVFQTEMEPKLADEEYRKALASD 101
Score = 48.8 bits (117), Expect = 3e-08
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
E+SL+ RN + A +L + ++ A +Y++ + +NA +
Sbjct: 165 EKSLRLNRNQPSVALEM-------ADLLYKEREYVPARQYYDLFAQGGGQNARSL-LLGI 216
Query: 71 LMLQARGNVDEAIKLIEKAISID 93
+ + + D A + +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLY 239
Score = 48.4 bits (116), Expect = 4e-08
Identities = 12/114 (10%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV- 57
+ + +E+R +N + L +Q+ ++ A + + +
Sbjct: 83 TEMEPKLADEEYRKALASDSRNARVLNN-------YGGFLYEQKRYEEAYQRLLEASQDT 135
Query: 58 -DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
PE + ++ + L+ +A + EK++ ++++ + + +
Sbjct: 136 LYPERSRVFENLG-LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188
Score = 47.3 bits (113), Expect = 1e-07
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97
LV + G + ++ + E Y+ L RGN ++A + KA+ ID S
Sbjct: 14 LVPRGSHMGDQNPL-KTDKGRDEARDAYIQLG-LGYLQRGNTEQAKVPLRKALEIDPSSA 71
Query: 98 FAYETLGTI 106
A+ L +
Sbjct: 72 DAHAALAVV 80
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 62
+ + + F + L ++ ED D A Y + R+ P +
Sbjct: 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 62.7 bits (153), Expect = 4e-13
Identities = 9/101 (8%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D ++ ++ E L A+ + + + A + ++ +N +
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ L G+ + ++ + + + +D+ + +
Sbjct: 192 YKISTL-YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Score = 60.0 bits (146), Expect = 4e-12
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
E A + ++++P+N + RA DEAI+ E A ++
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA-YLIEEMYDEAIQDYEAAQEHNE 337
Query: 95 SCMFAYETLGTIEVQ 109
+ E L +
Sbjct: 338 NDQQIREGLEKAQRL 352
Score = 57.7 bits (140), Expect = 3e-11
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+ + A V + A + I + + + + R L L +G
Sbjct: 35 DNYIAYYR-------RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL-LLKQGK 86
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
+DEA +K + + S E +
Sbjct: 87 LDEAEDDFKKVLKSNPSEQEEKEAESQL 114
Score = 55.7 bits (135), Expect = 1e-10
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
VE + L+ A F+ ++ DP+N Y RA + A G A+ +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLT 61
Query: 88 KAISIDKSCMFAYETLGTI 106
K I++ A G +
Sbjct: 62 KVIALKMDFTAARLQRGHL 80
Score = 55.0 bits (133), Expect = 2e-10
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 28/118 (23%)
Query: 8 ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
+ + +L + +F +L+ Q D AE+ F + ++ +P
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 61 NASLYVHRAMLM--------------LQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ L+ + AI ++K + + E
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161
Score = 52.3 bits (126), Expect = 2e-09
Identities = 11/116 (9%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+++ + + S+ EA + + D + + +++D ++ +
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225
Query: 66 VHRAML-----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTI 106
H + L G +A E + + + + + E +
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281
Score = 34.6 bits (80), Expect = 0.004
Identities = 7/62 (11%), Positives = 24/62 (38%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E+ ++++ + + V A A+ + +E +D A + + + + + +
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345
Query: 68 RA 69
Sbjct: 346 LE 347
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 61.0 bits (149), Expect = 1e-12
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
S S + D++ A E F ++I + E+A Y++ A
Sbjct: 9 HHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFAN 65
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L L + ++ A+ +KA+ +D S AY G +
Sbjct: 66 L-LSSVNELERALAFYDKALELDSSAATAYYGAGNV 100
Score = 59.1 bits (144), Expect = 5e-12
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
E+ + +L + N + F L ++ D A F D
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEARFQ-------FGMCLANEGMLDEALSQFAAVTEQD 189
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
P +A + + + + N ++A+++++KAI I M A +
Sbjct: 190 PGHADAFYNAGVT-YAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236
Score = 56.8 bits (138), Expect = 4e-11
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
+E +++ F D + VLV E A Y R++ ++
Sbjct: 103 VKEMYKEAKDMFEKALRAGMENGDLFYML-------GTVLVKLEQPKLALPYLQRAVELN 155
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + L G +DEA+ D A+ G
Sbjct: 156 ENDTEARFQFG-MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202
Score = 56.0 bits (136), Expect = 8e-11
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
++++E + + N FA +L + + A ++++++ +D A+ Y
Sbjct: 47 TKAIEENKEDAIPYIN-------FANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + EA + EKA+ + LGT+
Sbjct: 100 V-YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
+ ++++L +F D N +E+ + A E +++I +
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNA-------GVTYAYKENREKALEMLDKAIDIQ 223
Query: 59 PENASLYVHRAMLMLQARGN 78
P++ + +L +
Sbjct: 224 PDHMLALHAKKLL-GHHHHH 242
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/86 (13%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+ T +N+ + +D A + N+ + + +A+++ A++ +
Sbjct: 514 PWAATWANL-------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV-YLHKKI 565
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLG 104
AI + ++++I + + A + L
Sbjct: 566 PGLAITHLHESLAISPNEIMASDLLK 591
Score = 59.9 bits (145), Expect = 6e-12
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ ++ + F A FA + + D A + + R+ Y
Sbjct: 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ M GN+ A + ++ + ++ + LG +
Sbjct: 445 LFLGMQ-HMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484
Score = 58.3 bits (141), Expect = 2e-11
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ + VD H + A YF++S +DP+ ++
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A G D+AI A + + Y LG
Sbjct: 413 FA-HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Score = 55.6 bits (134), Expect = 2e-10
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+Q++ + + + A EY S + + L
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKS 95
++ + ++ AI + A+ + K
Sbjct: 481 LGVV-AFNKSDMQTAINHFQNALLLVKK 507
Score = 54.8 bits (132), Expect = 4e-10
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E S+ D A L + F + + +DP N +Y
Sbjct: 292 EDYLSSINGLEKSSDLLLC-------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L G ++ + + + +G
Sbjct: 345 HLAS-LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382
Score = 49.8 bits (119), Expect = 2e-08
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 40 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
ED E + SI +++ L + +A L R + + + K + ID +
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADT-LFVRSRFIDVLAITTKILEIDPYNLDV 341
Query: 100 YETLGTI 106
Y
Sbjct: 342 YPLHLAS 348
Score = 49.5 bits (118), Expect = 2e-08
Identities = 8/106 (7%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPE 60
+ + + ++ V ++ D A +F ++ + +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 61 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A+ + + + D AI + + + + + + + +
Sbjct: 515 WAATWANLGHA-YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559
Score = 40.2 bits (94), Expect = 4e-05
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-MLQARGNVDEAIKL-I 86
C L QV + +FD A+E + ++ VD + + +L A D +KL
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 87 EKAISIDKSCMFAYETLG 104
D + + + L
Sbjct: 261 STYSKEDAAFLRSLYMLK 278
Score = 39.4 bits (92), Expect = 9e-05
Identities = 7/65 (10%), Positives = 21/65 (32%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ + ++ + +N T A V + ++ A + + S+ + P
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
Query: 68 RAMLM 72
+
Sbjct: 590 LKRAL 594
Score = 35.2 bits (81), Expect = 0.002
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
+ L+ + Q+ + A + + + + + G+ A L+
Sbjct: 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT--GDYARAKCLLT 141
Query: 88 KAISIDKSCMFAY 100
K ++S Y
Sbjct: 142 KEDLYNRSSACRY 154
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 61.0 bits (147), Expect = 2e-12
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ +E++++ +R ++ A + A VL Q A ++ +IR+ P A Y
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ L+ +V A++ +AI I+ + A+ L +I
Sbjct: 81 SNMGN-TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Score = 55.2 bits (132), Expect = 3e-10
Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ +++++L ++ + +A + L + +D GA + + R+I+++P A +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ A + + GN+ EAI A+ + AY L
Sbjct: 115 SNLAS-IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 54.8 bits (131), Expect = 4e-10
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
++ A + +Q + + A + +++ V PE A+ + + A +LQ +G + EA+ +
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQEALMHYK 67
Query: 88 KAISIDKSCMFAYETLGTI 106
+AI I + AY +G
Sbjct: 68 EAIRISPTFADAYSNMGNT 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 60.7 bits (147), Expect = 3e-12
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPE 60
+ + ++ R + + + L A L E+ E+ ++ P
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245
Query: 61 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A + + D+AI+L++KA+ + + + +G
Sbjct: 246 VTDVLRSAAKF-YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
Score = 58.0 bits (140), Expect = 3e-11
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPENAS 63
+ E++ F ++ E + A +++ A + ++IR++P+N
Sbjct: 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210
Query: 64 LYVHRAML---MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L V A+ M + E KL+E+A+ +
Sbjct: 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256
Score = 56.5 bits (136), Expect = 8e-11
Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SL 64
E + ++ + + + N+ C++ A + + ++ AE YF + + L
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
++ L D+AI + + I++ + ++
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Score = 53.8 bits (129), Expect = 7e-10
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
++V+ ++F + S ++ + ++ + A+ F +++ P+N
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 68 RAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A+ L AI + +AI ++ + L
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ E + K ++ V + A+ +++ D A E +++ P NA L+
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 66 VHRAML------------------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + A+ ++KA + + L ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343
Score = 38.4 bits (89), Expect = 2e-04
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 48 EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
++ + + ++ A L + + +A + E+ + A G
Sbjct: 416 QKIAKMRLSKNGADSEALHVLAFL-QELNEKMQQADEDSERGLESGSLIPSASSWNG 471
Score = 34.5 bits (79), Expect = 0.003
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 6 DRERVEQSLKEF-RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
++E+++ L++ + + + EA + A + E A+E R + S
Sbjct: 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
Query: 65 YVHR 68
Sbjct: 467 SSWN 470
Score = 27.2 bits (60), Expect = 1.2
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 40 DQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDK 94
+ D E+ + + + +G + A++ + KA + +
Sbjct: 27 GENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 60.0 bits (146), Expect = 3e-12
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+D + + ++ +F A +Y + IR + ++
Sbjct: 106 TRLDMYGQI-------GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKE 157
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
+A K + + + Y
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARA 185
Score = 58.1 bits (141), Expect = 1e-11
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D E + + + ++L+ + A + + ++ D +Y
Sbjct: 59 DIETYFSKVNATKAKSADFEY-------YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+GN AI+ +EK I + + LG
Sbjct: 112 GQIGSY-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151
Score = 56.9 bits (138), Expect = 4e-11
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE---KAIS 91
A L ++ A E FN+ + +Y RA+ D A K IE ++
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVC-YYELAKYDLAQKDIETYFSKVN 68
Query: 92 IDKSCMFAYETLGTI 106
K+ +E G I
Sbjct: 69 ATKAKSADFEYYGKI 83
Score = 56.1 bits (136), Expect = 7e-11
Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 4/104 (3%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY---FNRSIRVDPENA 62
++++ F N A + +D A++ + + +
Sbjct: 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS 74
Query: 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + + + L +G AI+ + A+ D + + Y +G+
Sbjct: 75 ADFEYYGKI-LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Score = 46.9 bits (112), Expect = 1e-07
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 11/95 (11%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-------L 71
N + A A A+ Y+ + I V + Y +
Sbjct: 174 NIYIGYLWR--ARANAA--QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229
Query: 72 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ +A + +++D + A + L
Sbjct: 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 60.0 bits (146), Expect = 4e-12
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+L++ + + + L V + + A +Y +++ + P+NAS Y
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ GN + A+ A+ + + F+ LG
Sbjct: 277 GYI-HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313
Score = 57.7 bits (140), Expect = 3e-11
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
+ E + + A + + + D A + + ++ +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163
Query: 67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + N A + +A+SI F +G +
Sbjct: 164 YIGLE-YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202
Score = 51.9 bits (125), Expect = 3e-09
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+ +S+ + +D ++ A+ DF + + + DP +AS
Sbjct: 11 IPESVDGLQENLDVVVSL-------AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L +E L K + + S ++ +G
Sbjct: 64 GT-LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99
Score = 48.4 bits (116), Expect = 6e-08
Identities = 12/96 (12%), Positives = 31/96 (32%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ K ++ + LV+ + ++ + + P N +
Sbjct: 37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
L + A + + KA +++K+ A+ G
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132
Score = 47.7 bits (114), Expect = 1e-07
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
++ ++L R + + + +F+ A +YF+ ++ + ++
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309
Query: 68 RAMLMLQARGNVDEAIK 84
++ EA
Sbjct: 310 LGHC-IEMYIGDSEAYI 325
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 10/108 (9%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------- 60
+ + + F + V ++ AE++F ++
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 61 --NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
L + + + EA+ +A+ + Y +G I
Sbjct: 233 DKWEPLLNNLG-HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 60.1 bits (146), Expect = 4e-12
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
E A + ++++P+N + RA DEAI+ E A ++
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA-YLIEEMYDEAIQDYETAQEHNE 360
Query: 95 SCMFAYETLGTIEVQR 110
+ E L +
Sbjct: 361 NDQQIREGLEKAQRLL 376
Score = 59.7 bits (145), Expect = 6e-12
Identities = 8/101 (7%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ ++ E L A+ + + + A + ++ +N +
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ L G+ + ++ + + + +D+ + +
Sbjct: 215 YKISTL-YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 56.6 bits (137), Expect = 7e-11
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A D+ A + ++ + V +A L RA G +AI ++ A +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKN 208
Query: 95 SCMFAYETLGTI 106
A+ + T+
Sbjct: 209 DNTEAFYKISTL 220
Score = 53.9 bits (130), Expect = 6e-10
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ L+ A F+ ++ DP+N Y RA + A G A+ + K I +
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIQLKM 91
Query: 95 SCMFAYETLGTI 106
A G +
Sbjct: 92 DFTAARLQRGHL 103
Score = 53.5 bits (129), Expect = 1e-09
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A V + A + I++ + + + R L L +G +DEA +K + +
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL-LLKQGKLDEAEDDFKKVLKSNP 125
Query: 95 SCMFAYETLGTI 106
S E +
Sbjct: 126 SENEEKEAQSQL 137
Score = 51.6 bits (124), Expect = 5e-09
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 28/118 (23%)
Query: 8 ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
+ + +L + +F +L+ Q D AE+ F + ++ +P
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 61 NASLYVHRAMLM--------------LQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
++ L+ G+ AI ++K + + E
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184
Score = 51.2 bits (123), Expect = 5e-09
Identities = 9/99 (9%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+++ + + ++ EA + + D + + +++D ++ +
Sbjct: 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248
Query: 66 VHRAML-----------MLQARGNVDEAIKLIEKAISID 93
H + L G +A E + +
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 59.5 bits (145), Expect = 4e-12
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E+ LK+ + E L + + D+ A + + I+ PE+A Y +
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
RA L + EAI KAI D + + AY T
Sbjct: 179 RAAA-LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Score = 56.0 bits (136), Expect = 7e-11
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L F A N++I DP Y+ +A A A++ ++ A + D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 238
Query: 95 SCMFAYETLG 104
Sbjct: 239 EVNNGSSARE 248
Score = 56.0 bits (136), Expect = 8e-11
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A ++ +++ A N ++ E + Y + GN + ++K I +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS-FARIGNAYHKLGDLKKTIEYYQ 103
Query: 95 SCMFAY 100
+ +
Sbjct: 104 KSLTEH 109
Score = 52.6 bits (127), Expect = 1e-09
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
FD A E++N++ + + + +RA +G + AI + A+ +
Sbjct: 14 KFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREM 71
Query: 97 MFAYETLG 104
Y+ +
Sbjct: 72 RADYKVIS 79
Score = 48.3 bits (116), Expect = 5e-08
Identities = 8/94 (8%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
++++ R + + ++ + ++I ++ + + A
Sbjct: 62 NDAVEQGREMRADYKVI-------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD 113
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ L N ++ +K E ++ G
Sbjct: 114 I-LTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 74
NFV + A + +++ A E + + D E + R + L
Sbjct: 205 NFVRAYIR-------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 59.9 bits (145), Expect = 5e-12
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 1/98 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ L + R V A + A + D E R + + P +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + EA L+++A LG
Sbjct: 64 GRVR-WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
Score = 57.5 bits (139), Expect = 3e-11
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ + H EA +V Q+ A ++ PE+ +
Sbjct: 35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ L+ G + A +A + + L
Sbjct: 95 LWLGHA-LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
Score = 51.4 bits (123), Expect = 5e-09
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
D ++R P++ ++ A G+ +++ +++ A
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADA-ELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 103 LGTIEVQR 110
LG + +
Sbjct: 63 LGRVRWTQ 70
Score = 28.3 bits (63), Expect = 0.59
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 77 GNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + + A+ A+ L
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADA 32
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 56.1 bits (136), Expect = 8e-12
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
AQ + ++ A F + DP+ Y H L + D+AI + I + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDAIDTYAQGIEVAR 72
Score = 41.9 bits (99), Expect = 2e-06
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ ++L F V+T + V ++ + D A + + + I V E +
Sbjct: 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78
Query: 66 VHRAM 70
+
Sbjct: 79 DLSEL 83
Score = 38.8 bits (91), Expect = 4e-05
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
DPE+ A N A+ L E+ + D + Y LG +
Sbjct: 3 DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKL 50
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 59.0 bits (143), Expect = 1e-11
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + PE
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 418 HDGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455
Score = 58.2 bits (141), Expect = 2e-11
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
E V++ L V A E ++ + P+
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 348 ASHDGG-KQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Score = 57.1 bits (138), Expect = 6e-11
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + P+
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A +
Sbjct: 248 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG 285
Score = 56.7 bits (137), Expect = 7e-11
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + PE
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 146 HDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183
Score = 56.3 bits (136), Expect = 1e-10
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + PE
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 180 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Score = 55.9 bits (135), Expect = 1e-10
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A + E ++ + P+
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A +
Sbjct: 316 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353
Score = 50.5 bits (121), Expect = 1e-08
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 1/88 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
E V++ L V A E ++ + P+
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISID 93
A ++ + + A++
Sbjct: 450 ASNGGG-RPALESIVAQLSRPDPALAAL 476
Score = 39.0 bits (91), Expect = 1e-04
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + PE QA V + ++ +A + + A +
Sbjct: 57 RNALTGAPLNLTPEQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 115
Score = 28.9 bits (65), Expect = 0.34
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 8/81 (9%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E + ++ + +
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA-- 483
Query: 68 RAMLMLQARGNVDEAIKLIEK 88
L G A+ ++K
Sbjct: 484 -----LACLGG-RPALDAVKK 498
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 58.5 bits (142), Expect = 1e-11
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
+ +F + + + L +FD A E F+ + +D
Sbjct: 55 SLGLRALARNDFSQALAIRPDMPEVFNY-------LGIYLTQAGNFDAAYEAFDSVLELD 107
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
P +++R + L G A + D + F L E +
Sbjct: 108 PTYNYAHLNRG-IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 157
Score = 53.1 bits (128), Expect = 9e-10
Identities = 6/56 (10%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ +Q + + + + + + + G++D A L + A++ +
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANN 245
Score = 51.2 bits (123), Expect = 4e-09
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
+ A F++++ + P+ ++ + + L GN D A + + + +D +
Sbjct: 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTY 110
Query: 97 MFAYETLGTI 106
+A+ G
Sbjct: 111 NYAHLNRGIA 120
Score = 44.2 bits (105), Expect = 2e-06
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+ +T+ + + D D A F ++ + N + + L L G
Sbjct: 213 HLSETNFY-------LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL-LELSLLGQ 264
Query: 79 VDEAIK 84
+ +
Sbjct: 265 DQDDLA 270
Score = 41.9 bits (99), Expect = 8e-06
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 33 LFAQVLVDQEDFDGAEEYFNRSIR----VDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
+ A L + + + D E A L R +L + G A +
Sbjct: 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLRALARNDFSQ 68
Query: 89 AISIDKSCMFAYETLGTI 106
A++I + LG
Sbjct: 69 ALAIRPDMPEVFNYLGIY 86
Score = 40.4 bits (95), Expect = 3e-05
Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 3/103 (2%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
R + + + F N D A+E + + +
Sbjct: 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGW 181
Query: 66 VHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + + ++ S+ + LG
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 56.7 bits (137), Expect = 1e-11
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ + + K F+ ++ A + ++ +D
Sbjct: 30 QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
H A G++D A A ++ +
Sbjct: 90 FHAAEC-HLQLGDLDGAESGFYSARALAAA 118
Score = 54.7 bits (132), Expect = 6e-11
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76
+ +E +D A++ F +D +A ++ Q+
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQSL 65
Query: 77 GNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
G ++A++ +D +
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Score = 30.1 bits (68), Expect = 0.081
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRV---DPENASLYVHRAMLMLQA 75
A+ + D DGAE F + + P + +L RA ML+A
Sbjct: 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALA-ARAGAMLEA 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 56.0 bits (135), Expect = 3e-11
Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 63
++ E L+ ++ + + E L + + Q D+ + + +++++ ENA
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 64 LYVHRA-MLMLQARGNV-DEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
LY A +L QA ++ + +I+KA+++D + + A L + +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128
Score = 31.0 bits (70), Expect = 0.056
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
+ Q+ + SN + A L A Q ++ A E + + + ++ +
Sbjct: 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151
Query: 65 Y-----VHRAMLMLQAR 76
++ A L+ +
Sbjct: 152 TQLVESINMAKLLQRRS 168
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 56.1 bits (136), Expect = 6e-11
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 17/93 (18%)
Query: 9 RVEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59
R +S+ F + N Q F AE Y RS+ P
Sbjct: 92 RPAESMAYFDKALADPTYPTPYIANLNK-------GICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 60 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
+ + A G + +A +K S
Sbjct: 145 QFPPAFKELART-KMLAGQLGDADYYFKKYQSR 176
Score = 53.4 bits (129), Expect = 5e-10
Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ Q+ + + + A + A++ + D A+E F +++ + P++A +
Sbjct: 20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAIS--IDKSCMFAYETLGTI 106
+ + E++ +KA++ + A G
Sbjct: 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122
Score = 47.6 bits (114), Expect = 8e-08
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75
+ + + + A + +D+ A +++ DP+N ++ RA + Q
Sbjct: 3 KANQVSNIKTQL-------AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRA-EIYQY 54
Query: 76 RGNVDEAIKLIEKAISID 93
D+A + +A+SI
Sbjct: 55 LKVNDKAQESFRQALSIK 72
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/115 (9%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRV 57
+ +++ + FR + + ++N + L + + YF++++
Sbjct: 54 YLKVNDKAQESFRQALSIKPDSAEINNN-------YGWFLCGRLNRPAESMAYFDKALAD 106
Query: 58 D--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
P +++ + +G A ++++++ A++ L ++
Sbjct: 107 PTYPTPYIANLNKG-ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160
Score = 36.1 bits (84), Expect = 8e-04
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
++SL F + A+ + A+ YF + + + +
Sbjct: 137 KRSLAAQPQFPPAFKEL-------ARTKMLAGQLGDADYYFKKYQSRVEVLQADDL---L 186
Query: 71 LMLQARGNVDEAIKLIEKAISIDK 94
L + + A E +
Sbjct: 187 LGWKIAKALGNAQAAYEYEAQLQA 210
Score = 35.7 bits (83), Expect = 0.001
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ +++ A + + +A IE A+ D A+ I
Sbjct: 5 NQVSNIKTQLA-MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEI 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 55.2 bits (134), Expect = 7e-11
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
++ + ++ + L + FD A + F ++ +
Sbjct: 88 QVQKYDLAVPLLIKVAEANPINFNVRFR-------LGVALDNLGRFDEAIDSFKIALGLR 140
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
P ++ A + G +EA+ +KA +D+ A L +
Sbjct: 141 PNEGKVHRAIAFS-YEQMGRHEEALPHFKKANELDEG---ASVELALV 184
Score = 53.6 bits (130), Expect = 3e-10
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
V++ + + V + + V + +D A + +
Sbjct: 54 KTGAVDRGTELLERSLADAPDNVKVATVL-------GLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
P N ++ + L G DEAI + A+ + + + +
Sbjct: 107 PINFNVRFRLG-VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153
Score = 52.8 bits (128), Expect = 6e-10
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
+ A + D + + +H + G VD +L+E++++
Sbjct: 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLG-IAYVKTGAVDRGTELLERSLADAPDN 75
Query: 97 MFAYETLGTI 106
+ LG
Sbjct: 76 VKVATVLGLT 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 54.8 bits (132), Expect = 7e-11
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
R+E++ FR V+ A + +E F A + + + + + + H
Sbjct: 50 GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDK 94
+A + E I
Sbjct: 110 TGQC-QLRLKAPLKAKECFELVIQHSN 135
Score = 54.0 bits (130), Expect = 1e-10
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71
+LK+ D ++ +A ++ + AE +F D N + A
Sbjct: 23 ATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA- 78
Query: 72 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ Q + +A L A ++ K+ G
Sbjct: 79 IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111
Score = 30.1 bits (68), Expect = 0.092
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75
Q + + A+E F I+ + +A L A
Sbjct: 111 GQCQLRLKAPLKAKECFELVIQHSNDEK--LKIKAQSYLDA 149
Score = 29.8 bits (67), Expect = 0.11
Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 1/75 (1%)
Query: 32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91
T + D + + + A G ++EA
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCI 64
Query: 92 IDKSCMFAYETLGTI 106
D + L I
Sbjct: 65 YDFYNVDYIMGLAAI 79
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 55.5 bits (134), Expect = 8e-11
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D++ + +L F D HS C + ++ AE+ F RSI D A Y
Sbjct: 18 DKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-AYETLG 104
R ML D AIK +++A+ + Y+ LG
Sbjct: 75 FQRGML-YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Score = 50.9 bits (122), Expect = 5e-09
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
+ D++D+ GA + F+ V ++ + + M N+ EA K ++I+ DK
Sbjct: 15 LAADKKDWKGALDAFSA---VQDPHSRICFNIG-CMYTILKNMTEAEKAFTRSINRDKHL 70
Query: 97 MFAYETLGTI 106
AY G +
Sbjct: 71 AVAYFQRGML 80
Score = 34.7 bits (80), Expect = 0.003
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
A + +E++ AEE + + E +D+A++ + K +
Sbjct: 128 AFMYAKKEEWKKAEEQLALATSMKSEP-------------RHSKIDKAMECVWKQKLYE 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 53.5 bits (129), Expect = 1e-10
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
ER+E L + + + + + + E FD A + ++ DP + +
Sbjct: 6 ERLEAMLAQGTDNMLLRFTL-------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Query: 68 RAMLMLQARGNVDEAIKLIEKAISID 93
LQ +G+ A + E ++
Sbjct: 59 LG-KTLQGQGDRAGARQAWESGLAAA 83
Score = 46.2 bits (110), Expect = 7e-08
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 45 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
E + +N L D A+ + A+ D + A++ LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Score = 43.9 bits (104), Expect = 5e-07
Identities = 13/79 (16%), Positives = 29/79 (36%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ E+ + +L R +D A + L Q D GA + + +
Sbjct: 31 EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ 90
Query: 66 VHRAMLMLQARGNVDEAIK 84
V + + + R ++A++
Sbjct: 91 VVKELQVFLRRLAREDALE 109
Score = 24.2 bits (53), Expect = 8.8
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + +E ++ M TLG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKT 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75
+ + S A++ + D A + +++ P++ L V A L
Sbjct: 146 ALEDTPEIRSA-------LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA-LLL 197
Query: 76 RGNVDEAIKLIEKAISID 93
+G +EA +
Sbjct: 198 KGKAEEAARAAALEHHHH 215
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 9 RVEQSLKEFR-------NFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57
V +L+ + ++ + + V + + A + RV
Sbjct: 54 LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+P A L++ R L+ G D+A +++A++++
Sbjct: 114 NPRYAPLHLQRG-LVYALLGERDKAEASLKQALALE 148
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
+ +EQ+L + + H V + D AE +++ ++
Sbjct: 96 GKGYLEQALSVLKDAERVNPRYAPLHLQ-------RGLVYALLGERDKAEASLKQALALE 148
Query: 59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A L + G +DEA+ KA+ + +
Sbjct: 149 D-TPEIRSALAEL-YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 24/115 (20%)
Query: 9 RVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
R + +L F + A+ + + A E + P
Sbjct: 20 RYDAALTLFERALKENPQDPEALYW-------LARTQLKLGLVNPALENGKTLVARTPRY 72
Query: 62 ASLYVHRA----------MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
Y+ + + +G +++A+ +++ A ++ + G +
Sbjct: 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127
Score = 48.7 bits (117), Expect = 2e-08
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
L +D A F R+++ +P++ A G V+ A++ + ++
Sbjct: 14 QLYALGRYDAALTLFERALKENPQDPEALYWLA-RTQLKLGLVNPALENGKTLVART 69
Score = 31.4 bits (72), Expect = 0.045
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ L A G D A+ L E+A+ + A L
Sbjct: 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLART 48
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 54.1 bits (130), Expect = 1e-10
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ + S+ +E A ++ A F +D ++ ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
QA G D AI +D
Sbjct: 62 G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96
Score = 48.0 bits (114), Expect = 2e-08
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
E + F+ +D A ++ +D H A
Sbjct: 38 EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 71 LMLQARGNVDEAIKLIEKAISIDKS 95
L G + EA + A + +
Sbjct: 98 C-LLQXGELAEAESGLFLAQELIAN 121
Score = 37.2 bits (86), Expect = 2e-04
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
+ + A Q+ G ++A + + +D +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 103 LGTI 106
LG
Sbjct: 61 LGAC 64
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 53.0 bits (128), Expect = 2e-10
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
+ E+F+ A ++ ++I ++P NA + +RA L GN A++ E+AI ID +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPA 78
Query: 96 CMFAYETLGT 105
AY +G
Sbjct: 79 YSKAYGRMGL 88
Score = 48.7 bits (117), Expect = 9e-09
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A ++ GA + R+I +DP + Y + L + EA+ +KA+ +D
Sbjct: 53 AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA-LSSLNKHVEAVAYYKKALELDP 111
Query: 95 SCMFAYETLGTIE 107
L E
Sbjct: 112 DNETYKSNLKIAE 124
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89
L A Y+ +++ +DP+N + N+ A + +A
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNE-----------TYKSNLKIAELKLREA 130
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 51.6 bits (125), Expect = 3e-10
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
N + N+ Q D+D A EY+ +++ +DP NA + + +G+
Sbjct: 7 NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
DEAI+ +KA+ +D + A + LG
Sbjct: 59 YDEAIEYYQKALELDPNNAEAKQNLGNA 86
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 54.7 bits (132), Expect = 4e-10
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ ++ + EA + E+ A R + + P N +
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A + + +A + ++ I + + +
Sbjct: 140 A-VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176
Score = 50.1 bits (120), Expect = 1e-08
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
+ +F+ A + FN ++ V PE+ SL+ L +EA++ +A+ I
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALEIQPGF 280
Query: 97 MFAYETLGTI 106
+ + LG
Sbjct: 281 IRSRYNLGIS 290
Score = 46.2 bits (110), Expect = 3e-07
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
L + + + A E + R++ + P + + G EA+ A+S+ +
Sbjct: 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG-ISCINLGAYREAVSNFLTALSLQRKS 314
Query: 97 MFAYETLG 104
+
Sbjct: 315 RNQQQVPH 322
Score = 41.2 bits (97), Expect = 2e-05
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 19 NFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQ 74
+ N ++ VD +G +E + + + + + + ++
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224
Query: 75 ARGNVDEAIKLIEKAISID 93
G + AI A+++
Sbjct: 225 LSGEFNRAIDAFNAALTVR 243
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
Q +Q +E+ + ++ + G++ I +E AI D
Sbjct: 37 ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFMEAAILQD 95
Query: 94 KSCMFAYETLGTI 106
A++ LG
Sbjct: 96 PGDAEAWQFLGIT 108
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 25/117 (21%)
Query: 8 ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
E + ++ + N + + A + A E I+ +P+
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMAL-------AVSYTNTSHQQDACEALKNWIKQNPK 165
Query: 61 NASLYVHRAMLM---------LQARGNVDEAIKLIEKAISIDKSCMFA--YETLGTI 106
L ++ ++ +L +A + + LG +
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 51.7 bits (124), Expect = 5e-10
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ ++ F EA + E A N + +DP++ +++
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 69 AMLMLQARGNVDEAIKLIEKAISID 93
A+ N + A+ + +
Sbjct: 92 AVS-HTNEHNANAALASLRAWLLSQ 115
Score = 45.1 bits (107), Expect = 2e-07
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
++ + A F + +PE + L AI + A +D
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG-LTQAENEKDGLAIIALNHARMLDP 82
Query: 95 SCMFAYETLGTI 106
+ + L
Sbjct: 83 KDIAVHAALAVS 94
Score = 34.4 bits (79), Expect = 0.002
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 58 DPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ N +Y M L + N+ EA E + A+ +LG
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLT 60
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 51.6 bits (125), Expect = 6e-10
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
N + N+ Q D+D A EY+ +++ +DP NA + + +G+
Sbjct: 41 NNAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 92
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
DEAI+ +KA+ +D + A + LG
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 30.1 bits (69), Expect = 0.072
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+G+ DEAI+ +KA+ +D + A+ LG
Sbjct: 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 52
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 53.8 bits (130), Expect = 7e-10
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ ++ F EA + E A N + +DP++ +++
Sbjct: 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95
Query: 69 AMLMLQARGNVDEAIKLIEKAISID 93
A+ N + A+ + +
Sbjct: 96 AVS-HTNEHNANAALASLRAWLLSQ 119
Score = 51.1 bits (123), Expect = 5e-09
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ Q+ ++ + E ++ + A F + PE +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ AI + A +D + + L
Sbjct: 62 GLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALA 96
Score = 48.4 bits (116), Expect = 4e-08
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 19 NFVDTHSNVVEACTLFAQ--------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+ S ++A ++ + ++ ++P +A L+ +
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180
Query: 71 LMLQARGNVDEAIKLIEKAISID 93
L N D A + +A+ +
Sbjct: 181 L-YNLSNNYDSAAANLRRAVELR 202
Score = 48.4 bits (116), Expect = 4e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
N H++ + ++D A R++ + P++A L+ L
Sbjct: 170 NDAQLHAS-------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT-LANGNR 221
Query: 79 VDEAIKLIEKAISID 93
EA+ +A+ I+
Sbjct: 222 PQEALDAYNRALDIN 236
Score = 45.7 bits (109), Expect = 5e-07
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
L + A + +NR++ ++P + + A+ D A K + +AI +
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS-YSNMSQYDLAAKQLVRAIYMQVGG 273
Query: 97 MFAYETLG 104
Sbjct: 274 TTPTGEAS 281
Score = 39.2 bits (92), Expect = 8e-05
Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 18/85 (21%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------ 72
+V N+ A + +D A + R+I + + +
Sbjct: 238 GYVRVMYNM-------AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290
Query: 73 -----LQARGNVDEAIKLIEKAISI 92
L D + +
Sbjct: 291 FFRMLLNVMNRPDLVELTYAQNVEP 315
Score = 33.8 bits (78), Expect = 0.006
Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 1/64 (1%)
Query: 43 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
+ + + + N+ EA E A+ +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLS-MLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 103 LGTI 106
LG
Sbjct: 61 LGLT 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 51.6 bits (125), Expect = 9e-10
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+ N+ Q D+D A EY+ +++ +DP +A + + +G+
Sbjct: 67 RSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGD 118
Query: 79 VDEAIKLIEKAISID 93
DEAI+ +KA+ +D
Sbjct: 119 YDEAIEYYQKALELD 133
Score = 51.6 bits (125), Expect = 9e-10
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
+ N+ Q D+D A EY+ +++ +DP +A + + +G+
Sbjct: 33 RSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGD 84
Query: 79 VDEAIKLIEKAISIDKSCMFAYETLGTI 106
DEAI+ +KA+ +D A+ LG
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNA 112
Score = 50.5 bits (122), Expect = 2e-09
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
Q D+D A EY+ +++ +DP +A + + +G+ DEAI+ +KA+ +D
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 97 MFAYETLGTI 106
A+ LG
Sbjct: 69 AEAWYNLGNA 78
Score = 33.5 bits (78), Expect = 0.005
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
+ N Q D+D A EY+ +++ +DP +
Sbjct: 101 RSAEAWYN-------LGNAYYKQGDYDEAIEYYQKALELDPRS 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 51.1 bits (123), Expect = 1e-09
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97
Q+DF+ A +++++I +DP N + Y ++A + E ++ EKA+ + +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAV-YFEEKKFAECVQFCEKAVEVGRETR 76
Query: 98 FAYET 102
Y+
Sbjct: 77 ADYKL 81
Score = 46.1 bits (110), Expect = 9e-08
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 88
A V +++ F ++ +++ V E + Y A M Q + ++ A++ +
Sbjct: 49 AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108
Query: 89 AISIDKS 95
++S +
Sbjct: 109 SLSEFRD 115
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
E++++ R + + +A + Q D A ++F+RS+ + +
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 53.1 bits (128), Expect = 1e-09
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+ ++ F V +EA + E A R + + P+N + +
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 69 AMLMLQARGNVDEAIKLIEKAISID 93
A+ +A +++ +
Sbjct: 139 AVS-FTNESLQRQACEILRDWLRYT 162
Score = 50.4 bits (121), Expect = 1e-08
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ + D A F +++ DP++ + + AI + + + +
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKP 129
Query: 95 SCMFAYETLG 104
A L
Sbjct: 130 DNQTALMALA 139
Score = 47.0 bits (112), Expect = 1e-07
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
L + + A + R++ + P + + G EA++ +A+++ +
Sbjct: 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKS 318
Query: 97 MFAYETLGTI 106
G +
Sbjct: 319 RGPRGEGGAM 328
Score = 46.6 bits (111), Expect = 2e-07
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ ++D A + F ++ V P + L+ L +EA+ +A+ +
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG-ATLANGNQSEEAVAAYRRALELQ 281
Score = 45.4 bits (108), Expect = 5e-07
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCM 97
+ D +++ + + EN + L G++ A+ L E A+ D M
Sbjct: 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98
Query: 98 FAYETLGTI 106
A++ LGT
Sbjct: 99 EAWQYLGTT 107
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 28/113 (24%)
Query: 8 ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
E+ ++ R + A ++ A E +R P
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMA-------LAVSFTNESLQRQACEILRDWLRYTPA 164
Query: 61 NASLY--------------VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
A L R + L + E +L A+ +D + +
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Score = 44.3 bits (105), Expect = 2e-06
Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 17/84 (20%)
Query: 19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------ 72
++ + N+ ++ A E+F ++ + ++ +
Sbjct: 283 GYIRSRYNL-------GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335
Query: 73 ----LQARGNVDEAIKLIEKAISI 92
L G D + +S
Sbjct: 336 LRLALSMLGQSDAYGAADARDLST 359
Score = 43.1 bits (102), Expect = 4e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISID 93
L+ F +E F ++R+DP + V + ++ G D+A+ A+S+
Sbjct: 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 53.5 bits (128), Expect = 1e-09
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E +++ L + V A E ++ + P+
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105
QA V + ++ +A + + A +
Sbjct: 300 HGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Score = 50.8 bits (121), Expect = 8e-09
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L + V A E ++ + P+
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
QA V + ++ +A + + A + G +
Sbjct: 368 NG-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406
Score = 50.8 bits (121), Expect = 9e-09
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + P+
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 266 NIGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG 303
Score = 49.3 bits (117), Expect = 3e-08
Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
V A E ++ + P QA + + ++
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG-KQALETMQRLLPVLC 250
Query: 88 KAISIDKSCMFAYETLGTI 106
+A + + A +
Sbjct: 251 QAHGLPPDQVVAIASNIGG 269
Score = 48.9 bits (116), Expect = 4e-08
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + P
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
QA V + ++ +A + + A + G +
Sbjct: 639 HDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 677
Score = 47.7 bits (113), Expect = 1e-07
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L + V A E ++ + P
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + + ++ +A + + A +
Sbjct: 469 HD-GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Score = 47.7 bits (113), Expect = 1e-07
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V+Q L + V A ++ + P+
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A + G
Sbjct: 537 NGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574
Score = 47.3 bits (112), Expect = 2e-07
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 2/99 (2%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L + V A E ++ + P+
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + A +
Sbjct: 402 NGGK--QALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
Score = 45.4 bits (107), Expect = 8e-07
Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
V++ L + V A E ++ + P+
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
QA V + ++ +A + + + A +
Sbjct: 571 NG-GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Score = 43.5 bits (102), Expect = 3e-06
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L + V A E ++ + E
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
QA V + ++ +A + + A + G +
Sbjct: 707 NN-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 745
Score = 41.2 bits (96), Expect = 2e-05
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 1/86 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
E V++ L V A E ++ + P+
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 68 RAMLMLQARGNVDEAIKLIEKAISID 93
QA V + ++ +A +
Sbjct: 741 NGGG-KQALETVQRLLPVLCQAHGLT 765
Score = 28.1 bits (62), Expect = 0.77
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101
E + + P+ + QA V + ++ + + + + A
Sbjct: 918 ETVQRLLPVLCQDHGLTPDQVVAIASNSGG-KQALETVQRLLPVLCQDHGLTPNQVVAIA 976
Query: 102 TLG 104
+ G
Sbjct: 977 SNG 979
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 49.2 bits (118), Expect = 4e-09
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
Q + A +++ I P+N Y ++AM + L G +AI++ ++ + +
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTSTAEH 73
Query: 99 AY 100
Sbjct: 74 VA 75
Score = 33.8 bits (78), Expect = 0.002
Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 91
A L+ ++ A + + +R + + + A+ ++ +
Sbjct: 45 AMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY--RLELAQGAVGSVQIPVV 99
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 51.2 bits (122), Expect = 5e-09
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY----V 66
++ V +VEA +V + D A F+ ++ SL V
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179
Query: 67 HRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
R + + +V ++++ + A+ +D ++ LG
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220
Score = 49.2 bits (117), Expect = 3e-08
Identities = 13/99 (13%), Positives = 35/99 (35%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
++++ + F D++ + QE+ + + + A +
Sbjct: 48 QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + EA L+ KA+ ++ + A+ LG +
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146
Score = 44.6 bits (105), Expect = 1e-06
Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 6 DRERVEQSLKEFR-------NFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57
V S+++ + + + +L+ + + A + ++ +V
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250
Query: 58 D---PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
D N L+++RA L + + EA++ +A ++D + + +
Sbjct: 251 DRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301
Score = 44.2 bits (104), Expect = 2e-06
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ E+ ++ + D H N A + +E + A E F+++ +DP
Sbjct: 245 AQAEKVDRKASSNPDLHLN-------RATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297
Query: 68 RAMLMLQARGNVDEAIKLIEKA 89
L L+ + ++ K
Sbjct: 298 EQQL-LEFLSRLTSLLESKGKT 318
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 50.9 bits (121), Expect = 7e-09
Identities = 11/89 (12%), Positives = 31/89 (34%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
E+++ + F+ D S + A + Q ++ AE ++ D + +
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 67 HRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ +L + + + + +S
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
Score = 45.9 bits (108), Expect = 5e-07
Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ + +L+ +E + Q+L+ + D A + + D +
Sbjct: 113 YDQNPDAALRTLHQGDS-----LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167
Query: 66 VHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ A + + +A + ++ + + +
Sbjct: 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 49.7 bits (119), Expect = 7e-09
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
++++ A + + +++ + P N +RA + G ++A + E A +D A+
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAW 82
Query: 101 ETLGT 105
LG
Sbjct: 83 SRLGL 87
Score = 38.9 bits (91), Expect = 6e-05
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + A E + VDP+ + + + + A + EK I +
Sbjct: 52 AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA-RFDMADYKGAKEAYEKGIEAEG 110
Query: 95 S 95
+
Sbjct: 111 N 111
Score = 31.2 bits (71), Expect = 0.038
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
D D+ GA+E + + I + S + R + + + ++EA + E
Sbjct: 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK--IEEANRGAEPPADDVD 143
Query: 95 SCMFAYETLG 104
A G
Sbjct: 144 DAAGASRGAG 153
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 50.9 bits (121), Expect = 7e-09
Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLF-AQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
E + + ++ F + + +Q +D++ + + + N
Sbjct: 219 SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278
Query: 66 VHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+++ + +G DE+ + I I ++ S + Y LG +
Sbjct: 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKV 319
Score = 33.9 bits (77), Expect = 0.006
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
L +V + A + + + + P +LY + + +V + ++K ++
Sbjct: 315 LLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI---FQTSVPYVVPYLDKFLAS 371
Query: 93 D 93
+
Sbjct: 372 E 372
Score = 32.0 bits (72), Expect = 0.028
Identities = 7/76 (9%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH----RAMLMLQARGNVDEAIKLIEKAI 90
+ L + + ++ P +L + L+ +++ A +L+ + +
Sbjct: 167 LESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV 226
Query: 91 SIDKSCMFAYETLGTI 106
+A +
Sbjct: 227 QSSPEFTYARAEKALV 242
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 48.8 bits (117), Expect = 8e-09
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
+ D+ A ++N +++ DPENA LY +RA L A+ + I +D +
Sbjct: 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK 82
Query: 99 AY 100
Y
Sbjct: 83 GY 84
Score = 36.4 bits (85), Expect = 3e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L +F A + + IR+D + Y+ +A L A +A + E A+ +D
Sbjct: 54 AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC-LVAMREWSKAQRAYEDALQVDP 112
Query: 95 SCMFAYETL 103
S A E +
Sbjct: 113 SNEEAREGV 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 48.8 bits (117), Expect = 9e-09
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
+ D+ A +++ +I+ +P++A LY +RA L A+K E+ I ++ +
Sbjct: 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPT 82
Query: 96 CMFAY 100
+ Y
Sbjct: 83 FIKGY 87
Score = 42.2 bits (100), Expect = 3e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A +F A + I+++P Y +A L+A + +A+ + +KA+ +D
Sbjct: 57 AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA-LEAMKDYTKAMDVYQKALDLDS 115
Query: 95 SCMFAYETLGTIEVQR 110
SC A + + +
Sbjct: 116 SCKEAADGYQRCMMAQ 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 48.9 bits (117), Expect = 1e-08
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
+ A + R+I +P A Y +RA+ L + ++A+ +A+ +D +
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALELDGQSVK 78
Query: 99 AYETLGT 105
A+ LG
Sbjct: 79 AHFFLGQ 85
Score = 36.9 bits (86), Expect = 3e-04
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + + + A R++ +D ++ + + DEAI +++A S+ K
Sbjct: 50 ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC-QLEMESYDEAIANLQRAYSLAK 108
Query: 95 S 95
Sbjct: 109 E 109
Score = 28.8 bits (65), Expect = 0.25
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 74
Q ++ E +D A R+ + E + L+
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 47.4 bits (113), Expect = 2e-08
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ L++Q D + A + ++ +P Y + G+ +A+ + AI ++
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMG-NAYRKLGDWQKALNNYQSAIELN 65
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 90
D+ A + +I ++P++ + LQAR V + + K +
Sbjct: 44 AYRKLGDWQKALNNYQSAIELNPDSPA---------LQARKMVMDILNFYNKDM 88
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 49.5 bits (118), Expect = 2e-08
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+ A + R+I +P A Y +RA+ L+ ++A+ +A+ +D + A+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 75
Query: 101 ETLGTI 106
LG
Sbjct: 76 FFLGQC 81
Score = 35.7 bits (82), Expect = 0.001
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + + + A R++ +D ++ + + DEAI +++A S+ K
Sbjct: 45 ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC-QLEMESYDEAIANLQRAYSLAK 103
Query: 95 SCMFAYETLGTIEVQR 110
+ ++
Sbjct: 104 EQRLNFGDDIPSALRI 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 47.7 bits (114), Expect = 2e-08
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
+ D+ A + + I+ PE+A Y +RA L + EAI KAI D + +
Sbjct: 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEKDPNFVR 73
Query: 99 AYETLGT 105
AY T
Sbjct: 74 AYIRKAT 80
Score = 39.2 bits (92), Expect = 4e-05
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L F A N++I DP Y+ +A A A++ ++ A + D
Sbjct: 45 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 103
Query: 95 SCMFAYETLGTIEVQR 110
++
Sbjct: 104 EVNNGSSAREIDQLYY 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 47.1 bits (113), Expect = 3e-08
Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DK 94
+ D ++ + + F ++I++DPE + ++ + L +EA+ I++ D+
Sbjct: 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDE 73
Query: 95 SCMFAY 100
+
Sbjct: 74 YNKDVW 79
Score = 43.2 bits (103), Expect = 7e-07
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 37 VLVDQEDFDGAEEYFNR--SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
L + E ++ A + +N ++ D N ++ +A L+ + ++ E ++
Sbjct: 49 ALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA-LRYIEGKEVEAEIAEARAKLE 106
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
+ +N Y ++ GN E+I L EKAI +D + G
Sbjct: 1 MVDQNPEEYYLEG-VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKG 47
Score = 27.4 bits (62), Expect = 0.69
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENA 62
L E + E +++ +
Sbjct: 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 46.8 bits (112), Expect = 4e-08
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
+ D A + ++ +I++DP N LY +R+ G+ +A + K + +
Sbjct: 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK 73
Query: 99 AYETLGT 105
Y
Sbjct: 74 GYSRKAA 80
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+ D+ A E +++ + P+ Y +A L+ +EA + E+ + + +
Sbjct: 51 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA-LEFLNRFEEAKRTYEEGLKHEANNPQLK 109
Query: 101 ETLGTIEVQ 109
E L +E +
Sbjct: 110 EGLQNMEAR 118
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 46.6 bits (111), Expect = 4e-08
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
++ AE ++ P + +L V AM +L G ++ ++L+ K I+
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM-VLYNLGRYEQGVELLLKIIAET 91
Score = 34.7 bits (80), Expect = 0.001
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 43 DFDGAEEYFNRSIRV---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
A Y+ ++I + A Y+ + G +A ++ + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGST-FRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 100 YETLG 104
Sbjct: 64 RVFYA 68
Score = 24.3 bits (53), Expect = 7.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 77 GNVDEAIKLIEKAISIDKS 95
G +A+ EKAI+
Sbjct: 4 GLEAQAVPYYEKAIASGLQ 22
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 46.5 bits (111), Expect = 6e-08
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
++DFD A ++++++ +DP N + ++A G+ ++ +L EKAI + +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENRE 73
Query: 99 AYET 102
Y
Sbjct: 74 DYRQ 77
Score = 42.3 bits (100), Expect = 3e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 88
A V ++ D++ E ++I V EN Y A +AI K
Sbjct: 45 AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104
Query: 89 AISIDKS 95
+++ ++
Sbjct: 105 SLAEHRT 111
Score = 35.0 bits (81), Expect = 0.001
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
E++++ R + + + +A +E + A ++N+S+ L
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115
Score = 25.0 bits (55), Expect = 4.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 75 ARGNVDEAIKLIEKAISIDKSCMFAY 100
+ + D A+K +KA +D + M
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYI 41
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 46.2 bits (110), Expect = 1e-07
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
+D++ A ++++++I ++P NA Y +R++ L A+ +AI +DK +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIK 82
Query: 99 AY 100
Y
Sbjct: 83 GY 84
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ + E + A R+I +D + Y RA A G A++ E + +
Sbjct: 54 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS-NMALGKFRAALRDYETVVKVKP 112
Query: 95 SCMFAYETLGTIE 107
A
Sbjct: 113 HDKDAKMKYQECN 125
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 45.6 bits (108), Expect = 5e-07
Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASL 64
Q+ + ++ + +++ +LFA +D + ++ A +F ++ +
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ L ++ ++AI ++AI++ +
Sbjct: 227 LYNIG-LCKNSQSQYEDAIPYFKRAIAVFE 255
Score = 40.6 bits (95), Expect = 3e-05
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+++ TL+ Q ++ A YF R+I V E+ L
Sbjct: 205 SHFQKAYSMAEAEKQPQL---MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261
Query: 66 -VHRAMLML----QARGNVDEAIKLIEKAISIDK 94
+ +A ++ G +D+A + K ++ +
Sbjct: 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRV------ 57
++ R+ L E + ++E F +DQ ++ A ++F ++
Sbjct: 79 EQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD 138
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
E A + + ++ +A I K
Sbjct: 139 RIEKAEFFFKMS-ESYYYMKQTYFSMDYARQAYEIYKE 175
Score = 29.4 bits (66), Expect = 0.24
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 42/138 (30%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPENASLY 65
++++ F + ++ +A L Q+ D A EY ++ + D S +
Sbjct: 248 KRAIAVFEE-SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306
Query: 66 ---------------VHRAMLMLQ--------------------ARGNVDEAIKLIEKAI 90
+ L+ R N +A K
Sbjct: 307 EFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
Query: 91 SIDKSCMFAYETLGTIEV 108
+ + + +L IEV
Sbjct: 367 QVRQL-IQGGVSLYEIEV 383
Score = 28.6 bits (64), Expect = 0.45
Identities = 9/91 (9%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+++ + D E ++ + + +Y ++ + E+ + +
Sbjct: 127 KKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185
Query: 71 ------LMLQARGNVDEAIKLIEKAISIDKS 95
++AI +KA S+ ++
Sbjct: 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 45.4 bits (107), Expect = 5e-07
Identities = 12/91 (13%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
Q L+ + ++ + A V+ + + +D +Y ++ ++ D N S++
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
Query: 68 RAMLMLQARG-----NVDEAIKLIEKAISID 93
R ++ G ++ ++ + I +
Sbjct: 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Score = 42.4 bits (99), Expect = 8e-06
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASL 64
ER E++ K R+ ++ ++ +L Q+D Y I P+N +
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ HR +L ++ + + ++ I ++ D
Sbjct: 169 WHHRRVL-VEWLRDPSQELEFIADILNQD 196
Score = 40.8 bits (95), Expect = 2e-05
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
+ F VL E + A + +I ++ N +++ R +L+ + ++ E + I
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157
Query: 89 AISIDKSCMFAY 100
I +
Sbjct: 158 IIEEQPKNYQVW 169
Score = 40.4 bits (94), Expect = 3e-05
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 40 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
D+ + +Y I++ P N S + + ++ + + L+ + + + S
Sbjct: 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSSP 309
Query: 100 Y 100
Y
Sbjct: 310 Y 310
Score = 40.4 bits (94), Expect = 3e-05
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
++ D E+ + D +N + HR + +Q D ++ +++ + D
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV-IQEFKLWDNELQYVDQLLKEDVR 232
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 45.6 bits (108), Expect = 6e-07
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
E +L+ + + A +L A D A E+F ++ +V E + +
Sbjct: 206 EAALELAMDIQNDRF---IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262
Query: 69 AMLML----QARGNVDEAIKLIEKAISIDK 94
+ L G +A + IE+ +
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292
Score = 44.4 bits (105), Expect = 1e-06
Identities = 12/93 (12%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
Q+L ++N +++ + A D + +D A + ++ + + + R +
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQNDRFI 221
Query: 71 LML--------QARGNVDEAIKLIEKAISIDKS 95
+ G+ A++ +KA + +
Sbjct: 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Score = 37.5 bits (87), Expect = 3e-04
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRV------ 57
+R V + L+ + +++ +LF DQ+++ A Y+ + +
Sbjct: 77 NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD 136
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
D E A + A ++ I +A+ I +
Sbjct: 137 DIEKAEFHFKVAEA-YYHMKQTHVSMYHILQALDIYQ 172
Score = 36.7 bits (85), Expect = 6e-04
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+++ K R + + + L A ++ + + +
Sbjct: 246 QKAAKVSRE--KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303
Query: 71 LMLQARGNVDEAIKLIEKAISI 92
L LQA + I +S
Sbjct: 304 LFLQAVYKETVDERKIHDLLSY 325
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 44.1 bits (105), Expect = 2e-06
Identities = 9/92 (9%), Positives = 20/92 (21%), Gaps = 9/92 (9%)
Query: 11 EQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENA 62
++ L + + + P
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278
Query: 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ + L + +G + A L E A+ K
Sbjct: 279 TTLKNLGAL-YRRQGKFEAAETLEEAAMRSRK 309
Score = 40.2 bits (95), Expect = 3e-05
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 11 EQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPEN 61
+Q+L++ H +V + A V DQ + A N + IR P
Sbjct: 51 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
A+ + A+L RG EA L ++A+ I +
Sbjct: 111 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREK 143
Score = 37.5 bits (88), Expect = 3e-04
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 11 EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
+L + H V A + + + AE R+ IR P+
Sbjct: 93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
A + A+L Q +G +E ++A+ I ++
Sbjct: 153 AKQLNNLALL-CQNQGKYEEVEYYYQRALEIYQT 185
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 35 AQVLVDQEDFDGAEEYFNRS--IRV------DPENASLYVHRAMLMLQARGNVDEAIKLI 86
A + +Q ++ E Y+ R+ I DP A + A +G +A L
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC-YLKQGKFKQAETLY 218
Query: 87 EKAISI 92
++ ++
Sbjct: 219 KEILTR 224
Score = 26.3 bits (59), Expect = 2.5
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
P + + ++G + A+ L ++A+ +
Sbjct: 23 IPARLRTLHNLVIQ-YASQGRYEVAVPLCKQALEDLEK 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 43.7 bits (104), Expect = 2e-06
Identities = 8/90 (8%), Positives = 22/90 (24%), Gaps = 9/90 (10%)
Query: 11 EQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENA 62
++ L + + + ++ + Y P
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252
Query: 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
+ L + +G ++ A L + A
Sbjct: 253 TTLRSLGAL-YRRQGKLEAAHTLEDCASRN 281
Score = 41.0 bits (97), Expect = 2e-05
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 11 EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
+Q+L++ H +V + A V DQ + A N + IR P
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
A+ + A+L RG EA L ++A+ I +
Sbjct: 85 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREK 117
Score = 38.7 bits (91), Expect = 1e-04
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 11 EQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
+L H V A + + + AE R+ IR P+
Sbjct: 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
A + A+L Q +G +E +A+ I +
Sbjct: 127 AKQLNNLALL-CQNQGKAEEVEYYYRRALEIYAT 159
Score = 36.0 bits (84), Expect = 0.001
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 11 EQSLKEFRNFV-DTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRS--IRV------DP 59
+++L+ + H +V A L A + +Q + E Y+ R+ I DP
Sbjct: 109 KRALEIREKVLGKFHPDV--AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166
Query: 60 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
A + A +G +A L ++ ++
Sbjct: 167 NVAKTKNNLASC-YLKQGKYQDAETLYKEILTR 198
Score = 27.1 bits (61), Expect = 1.3
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 67 HRAMLMLQARGNVDEAIKLIEKAISIDKS 95
H A+ L ++A+ +
Sbjct: 5 HHHHHHSSGLVPRGSAVPLCKQALEDLEK 33
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 43.1 bits (102), Expect = 2e-06
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 41 QEDFDGAEEYFNRSIRVDP---ENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
D+ GA + +++ +D + A L+ +RA L L + D+A KAI D
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEASKAIEKDGG 97
Query: 96 CMFAY 100
+ A
Sbjct: 98 DVKAL 102
Score = 34.6 bits (80), Expect = 0.002
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + ED+D AE +++I D + R+ L+ G +D+A+ +++ +S++
Sbjct: 72 AACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA-LEKLGRLDQAVLDLQRCVSLEP 130
Query: 95 SCMFAYETLGTIE 107
E L I
Sbjct: 131 KNKVFQEALRNIS 143
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 43.3 bits (102), Expect = 3e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENASL 64
+Q+ F N + E +++LV Q+ FD A + + P
Sbjct: 139 QQAAAVFENE-ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ + ++ L R + A K + ++ SI
Sbjct: 198 CIAQVLVQL-HRADYVAAQKCVRESYSIP 225
Score = 36.0 bits (83), Expect = 0.001
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 38 LVDQEDFDGAEEYFNRSIRV-----DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
L++ D A + ++ V A+ + +A +L + DEA ++K S+
Sbjct: 125 LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184
Query: 93 DK 94
K
Sbjct: 185 YK 186
Score = 30.6 bits (69), Expect = 0.092
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 41 QEDFDGAEEYFNRSI---RVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
E AE+Y S + D ++A+ +A + + +++A +
Sbjct: 11 HEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA 65
Score = 29.5 bits (66), Expect = 0.23
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLV--DQEDFDGAEEYFNRSIRVDPENASLYVHR 68
++ ++ + + AQVLV + D+ A++ S + + S
Sbjct: 179 QKEKSMYKEMENYPT---CYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAA 235
Query: 69 AMLMLQA--RGNVDEAIKLIEK 88
+LQA + ++ +++
Sbjct: 236 LEDLLQAYDEQDEEQLLRVCRS 257
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 43.1 bits (102), Expect = 4e-06
Identities = 13/89 (14%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYV 66
+ + ++ D S++ L + L + D +F +I+ E+ +++Y
Sbjct: 32 DGNSQQGSG-SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90
Query: 67 HRAMLMLQARGNVDEAIKLIEKAISIDKS 95
G+ ++A++ + +++ KS
Sbjct: 91 QLGNA-YFYLGDYNKAMQYHKHDLTLAKS 118
Score = 42.3 bits (100), Expect = 8e-06
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+++L + EA + + +F+ A EY NR + + E L
Sbjct: 287 KRTLALAVELGEREV---EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE---LGDRI 340
Query: 69 AM--------LMLQARGNVDEAIKLIEKAISI 92
A G + A+K E+ + +
Sbjct: 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 38.8 bits (91), Expect = 1e-04
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRS--IRVD----PENA 62
++ L+ R F D + E + F+ A E++ R+ + V+ A
Sbjct: 247 QERLRIAREFGDRAA---ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Query: 63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ AI+ + ++I +
Sbjct: 304 QSCYSLGNT-YTLLHEFNTAIEYHNRHLAIAQE 335
Score = 36.5 bits (85), Expect = 7e-04
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASL 64
+ +++ + + + D++ A +Y + + A
Sbjct: 72 QAAIQAGT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ L+ G DEA E+ +++ +
Sbjct: 129 SGNLGNT-LKVMGRFDEAAICCERHLTLARQ 158
Score = 28.8 bits (65), Expect = 0.38
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--------LMLQARGNVD 80
+E A E++ ++++ + L A G+
Sbjct: 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 81 EAIKLIEKAISIDKS 95
AI+ ++ + I +
Sbjct: 241 AAIEHHQERLRIARE 255
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 40.3 bits (95), Expect = 3e-05
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+++L R D + ++C +D++ A +Y + + + E L
Sbjct: 247 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGE 302
Query: 71 --------LMLQARGNVDEAIKLIEKAISIDKS 95
A GN D+A+ EK + I +
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 8/91 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASL 64
E++L D + A +F A + + +
Sbjct: 167 EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
Y + G + A + +K + + +
Sbjct: 226 YSNLGNA-YIFLGEFETASEYYKKTLLLARQ 255
Score = 34.9 bits (81), Expect = 0.003
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASL 64
E +++ + + + D+ A EY + + + A
Sbjct: 29 EAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ L+ GN DEAI ++ + I +
Sbjct: 86 SGNLGNT-LKVLGNFDEAIVCCQRHLDISRE 115
Score = 33.8 bits (78), Expect = 0.006
Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 29 EACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEA 82
L + L D +F +++V E+ +++Y + +A
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKA 62
Query: 83 IKLIEKAISIDKS 95
++ +++ ++
Sbjct: 63 LEYHHHDLTLART 75
Score = 33.4 bits (77), Expect = 0.009
Identities = 14/110 (12%), Positives = 24/110 (21%), Gaps = 26/110 (23%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------------- 57
L R D +A L +FD A R + +
Sbjct: 67 HHDLTLARTIGD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125
Query: 58 ------------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
R + A+ L E+ +S+ +
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 40.0 bits (94), Expect = 5e-05
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD----PENASL 64
+++L R D + ++C +D++ A +Y + I +
Sbjct: 251 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
A GN D+A+ EK + I +
Sbjct: 310 CWSLGNA-YTALGNHDQAMHFAEKHLEISRE 339
Score = 36.5 bits (85), Expect = 8e-04
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVDPEN----ASL 64
E++L D + A +F A + I + +
Sbjct: 171 EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
Y + G + A + +K + + +
Sbjct: 230 YSNLGNA-YIFLGEFETASEYYKKTLLLARQ 259
Score = 36.1 bits (84), Expect = 0.001
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNV 79
L + L D +F +++V E+ +++Y +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDY 63
Query: 80 DEAIKLIEKAISIDKS 95
+A++ +++ ++
Sbjct: 64 AKALEYHHHDLTLART 79
Score = 33.0 bits (76), Expect = 0.013
Identities = 13/110 (11%), Positives = 24/110 (21%), Gaps = 26/110 (23%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------------- 57
L R D +A L +FD A R + +
Sbjct: 71 HHDLTLARTIGD-QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129
Query: 58 ------------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ R + A+ E+ +S+ +
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 39.2 bits (91), Expect = 8e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L+ + +D A + N + + +N R G +D A KA
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAP 295
Query: 95 S 95
Sbjct: 296 D 296
Score = 29.6 bits (66), Expect = 0.21
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 24 HSNVVEACT------------LF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
+ + C LF + + D A + F ++ + P++ + + R
Sbjct: 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA--IRRE 303
Query: 70 MLMLQAR 76
+ L +
Sbjct: 304 LRALAEQ 310
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 39.1 bits (90), Expect = 1e-04
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 15 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 66
K F D++ ++ V + +D++GA +Y + I+ AS+++
Sbjct: 327 KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386
Query: 67 HRAMLMLQARGNVDEAIKLIEKAISI 92
L + N K ++KAI+I
Sbjct: 387 KLGRLYMGL-ENKAAGEKALKKAIAI 411
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 37.4 bits (87), Expect = 2e-04
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+Q ++ D AEE + ++ + N RA A +DEA + ++ +
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA-RIAAWKLDEAEEDLKLLLRNHP 128
Query: 95 S 95
+
Sbjct: 129 A 129
Score = 28.1 bits (63), Expect = 0.44
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 41 QEDFDGAEEYFNRSIR------------------VDPENASLYVHRAMLMLQARGNVDEA 82
Q+D+ A + + ++ +D +N LY + + L G++ EA
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEA 82
Query: 83 IKLIEKAISIDKSCMFAY 100
+ + + +++ A
Sbjct: 83 EETSSEVLKREETNEKAL 100
Score = 27.3 bits (61), Expect = 1.0
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 14/54 (25%)
Query: 24 HSNVVEACT------------LF--AQVLVDQEDFDGAEEYFNRSIRVDPENAS 63
E + LF A+ + D AEE +R P AS
Sbjct: 79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 37.6 bits (88), Expect = 3e-04
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN-ASL 64
+ + + + A V + D GA + + +S+ D A
Sbjct: 90 LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQR 110
+ L Q N+ EA + +A I D + L +E
Sbjct: 150 FRGLGDL-AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN 61
+ + + A + V + FD A F + D
Sbjct: 6 HDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 62 -ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
M+ + GN D A + + +
Sbjct: 65 EHRALHQVGMV-ERMAGNWDAARRCFLEEREL 95
Score = 34.2 bits (79), Expect = 0.004
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENAS 63
+ ++ + D H+ A V ++D A F + ++
Sbjct: 50 QALQQQAQKSGD-HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108
Query: 64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + G++ A + EK++ +
Sbjct: 109 NAYEVATV-ALHFGDLAGARQEYEKSLVYAQ 138
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 36.9 bits (85), Expect = 4e-04
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
L+ Q + A + + +A +L+ + A +L+ +
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ 71
Score = 33.4 bits (76), Expect = 0.007
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ Q+L + D + + A L++ + F+ A+E +I ++ ++ S
Sbjct: 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA-TIPLEYQDNSYK 76
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A L L + +K +E+ ++ +
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQELAANP 105
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 37.2 bits (86), Expect = 4e-04
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + + F A E N+++ +D N R A + + A +K + +
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA-HLAVNDFELARADFQKVLQLYP 261
Query: 95 S 95
+
Sbjct: 262 N 262
Score = 28.7 bits (64), Expect = 0.38
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76
+ + DF+ A F + +++ P N + + + Q R
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQR 276
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 37.0 bits (86), Expect = 5e-04
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+D++ A ++++++I ++P NA Y +R++ L+ A+ +AI +DK + Y
Sbjct: 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGY 77
Score = 30.0 bits (68), Expect = 0.15
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ + E + A R+I +D + Y RA + A G A++ E + +
Sbjct: 47 SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVK 104
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 36.7 bits (85), Expect = 6e-04
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A +D+ A ++ ++ +++D N + G ++EA + + KA S++
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVA-NMYFGFLEEAKENLYKAASLNP 153
Query: 95 S 95
+
Sbjct: 154 N 154
Score = 29.7 bits (67), Expect = 0.15
Identities = 4/42 (9%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76
+ + A+E ++ ++P N + + + +
Sbjct: 129 GVANMYFGFLEEAKENLYKAASLNPNNLD--IRNSYELCVNK 168
Score = 29.4 bits (66), Expect = 0.19
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 17/76 (22%)
Query: 41 QEDFDGAEEYFNRSIRVDPEN----------------ASLYVHRAMLMLQARGNVDEAIK 84
+ + + A + ++ S ++ A + + +AI
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAID 109
Query: 85 LIEKAISIDKSCMFAY 100
K + IDK+ + A
Sbjct: 110 HASKVLKIDKNNVKAL 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 8e-04
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 29/136 (21%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF----------------DGAE 48
++ V +L+ F + +V+ +VL F
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 49 EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYET 102
E +R + A V R L+ R + E K + ID K+ + A +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWV-ALDV 170
Query: 103 LGTIEVQRTFV--VLW 116
+ +VQ + W
Sbjct: 171 CLSYKVQCKMDFKIFW 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 36.1 bits (83), Expect = 0.001
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPE 60
E E++ + + E + AQ+L D AE I V +
Sbjct: 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172
Query: 61 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
L ARG++D A + + ++ + + + + R
Sbjct: 173 QLQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221
Score = 32.6 bits (74), Expect = 0.015
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKAI 90
AQV ++ + D AE ++ P A +L +G + ++ L+++
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 91 SI 92
+
Sbjct: 81 QM 82
Score = 31.1 bits (70), Expect = 0.054
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 9/96 (9%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV----DQEDFDGAEEYFNRSIRVDPE 60
GD + L N + + + +V V D A + + + +
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247
Query: 61 N----ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
N + + A + G + A ++E+
Sbjct: 248 NNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNEN 282
Score = 29.6 bits (66), Expect = 0.22
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 5 GDRERV----EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF------NRS 54
G+ + + +L+E + + A ++ +VL + + + R
Sbjct: 28 GNPDEAERLAKLALEELPP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85
Query: 55 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
V + ++ + L A+G + A + EKA +
Sbjct: 86 HDVWHYALWSLIQQSEI-LFAQGFLQTAWETQEKAFQL 122
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 35.2 bits (82), Expect = 0.002
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVD------PENA 62
+++L R D EA + + +D++ A +Y + + +
Sbjct: 73 KKTLLLARQLKDRAV---EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129
Query: 63 SLY-----VHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ A+ GN D+A+ EK + I +
Sbjct: 130 RACWSLGNAYTAL------GNHDQAMHFAEKHLEISRE 161
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/83 (8%), Positives = 20/83 (24%), Gaps = 17/83 (20%)
Query: 24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLY-----VHRAMLM 72
+ A +F A + + + Y + +
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-- 62
Query: 73 LQARGNVDEAIKLIEKAISIDKS 95
G + A + +K + + +
Sbjct: 63 ----GEFETASEYYKKTLLLARQ 81
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 35.6 bits (81), Expect = 0.002
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 7 RERVEQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------- 57
+ + D + ++ ++ + A Y R++
Sbjct: 307 LAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366
Query: 58 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
P + L L G +A+K + A I
Sbjct: 367 HPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDI 400
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 35.4 bits (81), Expect = 0.002
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + ++ A E ++++ +D N R + A EK + ++
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA-QLLMNEFESAKGDFEKVLEVNP 382
Query: 95 S 95
Sbjct: 383 Q 383
Score = 29.6 bits (66), Expect = 0.17
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76
+ + +F+ A+ F + + V+P+N + + M Q +
Sbjct: 358 GEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQISMCQKK 397
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.4 bits (78), Expect = 0.004
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENAS 63
++ L + +D + N+ + A + + + F + ++ + +
Sbjct: 139 KKLLNQQLTGIDVYQNLYIENAI-ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197
Query: 64 LYVHRAMLMLQARGNVDEAIKLIEKAISI 92
+ + A L +E++ + KAI I
Sbjct: 198 VRYNHA-KALYLDSRYEESLYQVNKAIEI 225
Score = 34.4 bits (78), Expect = 0.005
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ 61
+ EQ LK+ D V+ A+ L ++ + N++I +
Sbjct: 176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
LY R + + E +KA
Sbjct: 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
Score = 24.7 bits (53), Expect = 9.4
Identities = 5/94 (5%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 8 ERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--- 63
+++ + F + + +L Q+ + ++ + +
Sbjct: 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113
Query: 64 --LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
+ + + + + + I ++K ++ +
Sbjct: 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 34.3 bits (78), Expect = 0.005
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 2/90 (2%)
Query: 5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
E+V D + + E F ++ +
Sbjct: 113 MKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
YV A++ + A K+ E +
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYG 200
Score = 32.3 bits (73), Expect = 0.022
Identities = 10/73 (13%), Positives = 27/73 (36%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A + ++ +NR + ++ + +L + M + + + +KA +
Sbjct: 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165
Query: 95 SCMFAYETLGTIE 107
+ Y T +E
Sbjct: 166 TRHHVYVTAALME 178
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 32.0 bits (72), Expect = 0.019
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----EDFDGAEEYFNRSIRVDPENASLY 65
E++L + + A T FA + D+ +FD A ++F +++ P+N + Y
Sbjct: 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THY 127
Score = 30.1 bits (67), Expect = 0.11
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE---YFNRSIRVDPENAS 63
R+ E + K D + +Q + +E F ++ +DP+
Sbjct: 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81
Query: 64 LYVHRAMLML----------QARGNVDEAIKLIEKAISID 93
+A+ N D A + ++A+
Sbjct: 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 31.8 bits (71), Expect = 0.041
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-- 95
+ D A + + R + P + + ++A N D+ KL ++ +
Sbjct: 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKVLHID 80
Query: 96 -----CMFAYETLGTIEVQRTFVVLW 116
+ ET G + + +
Sbjct: 81 LWKCYLSYVRETKGKLPSYKEKMAQA 106
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 31.0 bits (69), Expect = 0.043
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 42 EDFDGAEEYFNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISID 93
D A YFNR ++ + L++ L L G EA+ +K + +
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 31.2 bits (71), Expect = 0.048
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
+ D+ GA + ++ +DP N RA Q D+A+ ++KA I
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG-WQGLKEYDQALADLKKAQEIA 337
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 30.8 bits (69), Expect = 0.067
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-- 95
L D Y I P+N S + + + + ++ + + + + ++K
Sbjct: 196 LATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255
Query: 96 -CMFAYETLGTI 106
FA ETL I
Sbjct: 256 TSSFALETLAKI 267
Score = 29.3 bits (65), Expect = 0.24
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 49 EYFNRSIRVDPENASLYVHRAMLMLQARGN-----VDEAIKLIEKAISID 93
+ ++ I D +N S + HR L+ + +DE + ++ I
Sbjct: 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC 216
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 30.7 bits (70), Expect = 0.073
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 101
A + + + V D AS L A ML+ ++E +K +++ + A
Sbjct: 130 ASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDER--MKNKDFKAIF 187
Query: 102 TLGTIE 107
+ +
Sbjct: 188 YVSNFD 193
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 29.8 bits (66), Expect = 0.17
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 40 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN------VDEAIKLIEKAISID 93
+ + ++ N +RVD N S + R L + G + + + I K+I +
Sbjct: 179 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 29.3 bits (65), Expect = 0.23
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
FA Q ++ A E + E+ ++ +A++ A + I ++ A
Sbjct: 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWM-KAVVYGAAE-RWTDVIDQVKSAGKWP 165
Query: 94 KSCMFA 99
+
Sbjct: 166 DKFLAG 171
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 28.6 bits (64), Expect = 0.36
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 63
+L + + E L A+ L+ + AE +I + ++
Sbjct: 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVL-XTIPLQDQDTR 185
Query: 64 LYVHRAMLMLQAR-GNVDEAIKLIEKA 89
A + L + + E +L ++
Sbjct: 186 YQGLVAQIELLXQAADTPEIQQLQQQV 212
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 28.8 bits (64), Expect = 0.38
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEK 88
+ + A + +I++ A+ ++ + +AI E
Sbjct: 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143
Query: 89 AIS 91
A
Sbjct: 144 AGE 146
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 27.1 bits (60), Expect = 0.69
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 58 DPENASLYVHRAMLMLQARGNV--DEAIKLIEKAISIDKSCMFAYETLGT 105
+ A+ +A + DE L+E+A+ ++ A +
Sbjct: 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIAN 51
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 27.2 bits (60), Expect = 1.2
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---A 62
+++Q+L+ + + F ++L DF+ A+E +SI++ PE A
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 63 SLYVHRAMLMLQARGNVDEA 82
S + QAR + +
Sbjct: 69 SQL-RHLVKAAQARKDFAQG 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 26.6 bits (59), Expect = 1.5
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIKLIEKA 89
A + +D A + F + + P +Y A+ L A N A
Sbjct: 8 VAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDL 65
Query: 90 IS 91
+S
Sbjct: 66 VS 67
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 26.9 bits (59), Expect = 1.8
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----------------NASLYVHRAMLMLQ 74
+ + V++ +F+ AE++ + PE A LY RA+L
Sbjct: 139 HHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL 198
Query: 75 ARGNVDEAIKLIEK 88
NV A
Sbjct: 199 LVANVRAANTAYRI 212
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 26.4 bits (59), Expect = 2.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
EE+ N +I D + S V A++ + + D + I+ I
Sbjct: 107 IEEHPNLTIAFPDTKITSAPQGNLVRNALMCSREGMDFDVIVNKIQSQIE 156
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 26.4 bits (59), Expect = 2.6
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
EE+ +RV D ++ + + + M++ +E I+ +
Sbjct: 102 LEEHPQAKVRVIDSKSTGPQMRIILEQLQQMIEEGKKFEEIDGAIDAYMQ 151
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
structural genomics, PSI- protein structure initiative;
HET: STE; 1.90A {Eubacterium ventriosum}
Length = 297
Score = 26.1 bits (58), Expect = 2.7
Identities = 9/50 (18%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
E+Y + +I V D + + L + + + ML+ + ++A+ ++ ++
Sbjct: 111 LEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA 160
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 26.0 bits (58), Expect = 2.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
EEY + I V + +AS L + +A +E ++ +E I
Sbjct: 123 EEEYGEKQIHVFNSRSASVGETLIALKVQQCEKAGMTFEEVVESVECYIE 172
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
+EY + + D + AS L V +A+ + + + + IE
Sbjct: 108 LDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQNTPYNLLCETIESYCR 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 26.3 bits (57), Expect = 3.0
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 39 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 98
+ + E + DP + S + + L+ G + +++ S +SC
Sbjct: 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263
Query: 99 AYE 101
E
Sbjct: 264 LQE 266
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 26.0 bits (58), Expect = 3.0
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY- 100
E + V D V A M +A +++E + ++ K+ ++
Sbjct: 107 GAEIAEAPVTVLDSGFTDQAMKFQVVEAAKMAKAGASLNEILAAVQAI--KSKTELYIGV 164
Query: 101 ETL 103
TL
Sbjct: 165 STL 167
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 26.2 bits (56), Expect = 3.1
Identities = 7/91 (7%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ + + ++ + + V + + E F++ P A+++
Sbjct: 46 RDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCM 105
Query: 68 RAM--LMLQARGNVDEAIKLIEKAISIDKSC 96
R + ++ + +S +
Sbjct: 106 RLSLEFDKMEELDAAVIEPVLARCLSKELGN 136
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 26.1 bits (58), Expect = 3.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 47 AEEYFNRSIRV-DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAIS 91
EEY SI + D A+ A + ++ E +LI
Sbjct: 142 LEEYPQASIEIVDTLAATGGEGYLAMLAAQAREEGKSLKETKELILDVGP 191
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat,
helical linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 25.6 bits (56), Expect = 3.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 3 VPGDRERVEQSLKEFRNF---VDTHSNVVEACTLFAQVLVDQEDFDGAE 48
P D VE +K + ++T S AC + L+ ++ E
Sbjct: 32 RPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEE 80
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 25.5 bits (55), Expect = 4.6
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 20 FVDTHSNVVEACTL---FAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ D+ ++ +E L +VL+ E+ R+I + P ++Y
Sbjct: 175 WTDSGTSRIEVANLDGAHRKVLLW----QSLEKP--RAIALHPMEGTIY 217
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 25.6 bits (55), Expect = 4.7
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 20 FVDTHSNVVEACTL---FAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ D+ V + L + + R+I VDP + +Y
Sbjct: 487 WTDSVLGTVSVADTKGVKRKTLFR----ENGSKP--RAIVVDPVHGFMY 529
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 25.5 bits (55), Expect = 5.4
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 20 FVDTHSNVVEACTL---FAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
+ D+ V + L E R+I VDP + +Y
Sbjct: 469 WTDSVLGTVSVADTKGVKRKTLFR-EQGSKP-----RAIVVDPVHGFMY 511
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 6.5
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 29/99 (29%)
Query: 7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPEN--- 61
RE + F VD ++ +F ++ F + + +
Sbjct: 1685 RENYSAMI--FETIVDGK---LKTEKIFKEINEHSTSYTFRSEKGLLSA-----TQFTQP 1734
Query: 62 ASLYVHRAML-MLQARGNVDEAIKLIEKAISIDKSCMFA 99
A + +A L+++G I FA
Sbjct: 1735 ALTLMEKAAFEDLKSKGL-------------IPADATFA 1760
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 24.7 bits (53), Expect = 8.8
Identities = 7/64 (10%), Positives = 19/64 (29%)
Query: 25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
+ Q + + E + DP + S + + L+ +A +
Sbjct: 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCV 248
Query: 85 LIEK 88
+ +
Sbjct: 249 HVSR 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,791,587
Number of extensions: 101527
Number of successful extensions: 1099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 384
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)