RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12719
(116 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 64.3 bits (155), Expect = 6e-14
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ V ++ + + ++ A + +Q + + A + +++ V PE A+ +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ A + LQ +G + EA+ ++AI I + AY +G
Sbjct: 343 SNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Score = 58.5 bits (140), Expect = 6e-12
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
A DF+ AE + + R +P+N + + + + +D + AI +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNP 64
Query: 95 SCMFAYETLGTI 106
AY LG +
Sbjct: 65 LLAEAYSNLGNV 76
Score = 54.7 bits (130), Expect = 1e-10
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
++++ + + N A V +Q D A + + R+I + P Y +
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
A L+ +G+V EA A+ + + + L I
Sbjct: 277 LANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Score = 47.7 bits (112), Expect = 3e-08
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ +E++++ +R ++ A + A VL Q A ++ +IR+ P A Y
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 66 VHRAMLMLQARGN 78
+ L+ +
Sbjct: 377 SNMGNT-LKEMQD 388
Score = 46.6 bits (109), Expect = 1e-07
Identities = 7/66 (10%), Positives = 20/66 (30%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
E + + + L + + D + + +I+ +P A Y +
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 69 AMLMLQ 74
+ +
Sbjct: 74 GNVYKE 79
Score = 31.6 bits (70), Expect = 0.016
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
G+ + A + + + L +I Q
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC 46
Score = 31.2 bits (69), Expect = 0.020
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 48 EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + ++I P A + + + A+G + AI EKA+++D + + AY LG +
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGC-VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 50.8 bits (121), Expect = 2e-09
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ + + A E +I+ P++ASL L L G+ + A + + ++I +
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFP 61
Query: 95 SCMFAYETLG 104
+ L
Sbjct: 62 EYLPGASQLR 71
Score = 42.7 bits (100), Expect = 2e-06
Identities = 16/102 (15%), Positives = 37/102 (36%)
Query: 9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
+++Q+L+ + + F ++L DF+ A+E +SI++ PE
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
L+ A+ D A + + + + +
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS 112
Score = 28.1 bits (62), Expect = 0.24
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 75 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ G + +A++L+ +AI + +
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID 43
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 47.9 bits (113), Expect = 3e-08
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85
+ + AE Y+ + ++ P N Y A+L ++G+ I
Sbjct: 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL-ASSKGDHLTTIFY 208
Query: 86 IEKAISIDKSCMFAYETLGTI 106
++I++ A L
Sbjct: 209 YCRSIAVKFPFPAASTNLQKA 229
Score = 36.7 bits (84), Expect = 3e-04
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
R + Q+ +R+ + + A + + D Y+ RSI V +
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223
Score = 35.9 bits (82), Expect = 5e-04
Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ +Y ++ + + + A + +R + + +K + D + +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPA-EVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60
Score = 24.0 bits (51), Expect = 6.5
Identities = 2/30 (6%), Positives = 10/30 (33%)
Query: 81 EAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
++ + + +A + + + R
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR 33
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 45.7 bits (107), Expect = 2e-07
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
+ F VL E + A + +I ++ N +++ R +L+ + ++ E + I
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103
Query: 89 AISIDKSCMFAYETLG 104
I +
Sbjct: 104 IIEEQPKNYQVWHHRR 119
Score = 33.0 bits (74), Expect = 0.004
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 54 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
I + +Y + ++ Q + A KL AI ++ + + +
Sbjct: 35 QIIYSDKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 44.0 bits (102), Expect = 8e-07
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
+ + D A F +++ DP++ + + AI + + + +
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKP 84
Query: 95 SCMFAY 100
A
Sbjct: 85 DNQTAL 90
Score = 40.6 bits (93), Expect = 1e-05
Identities = 6/79 (7%), Positives = 29/79 (36%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
E+++ +R ++ + + ++ A E+F ++ + ++
Sbjct: 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282
Query: 71 LMLQARGNVDEAIKLIEKA 89
+ + A+ ++ ++
Sbjct: 283 MSENIWSTLRLALSMLGQS 301
Score = 37.5 bits (85), Expect = 1e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 51 FNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+++ + + EN + L G++ A+ L E A+ D M A++ LGT
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Score = 37.1 bits (84), Expect = 2e-04
Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
++ ++++ F + N L + + A + R++ + P
Sbjct: 180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239
Query: 62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
+ + G EA++ +A+++ + G +
Sbjct: 240 IRSRYNL-GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 42.3 bits (98), Expect = 2e-06
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 33/107 (30%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------------------------ 72
L + A + R+I +P A Y +RA+
Sbjct: 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 73 ---------LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
+ DEAI +++A S+ K + ++
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Score = 36.5 bits (83), Expect = 2e-04
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83
V+A Q ++ E +D A R+ + E + L+
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IAKKKRWN 126
Query: 84 KLIEKAISIDKSCMFAYETLGTIEVQR 110
+ E+ I + L E +R
Sbjct: 127 SIEERRIHQESELHSYLTRLIAAERER 153
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 42.6 bits (98), Expect = 2e-06
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIK 84
E L AQV ++ + D AE ++ P A +L +G + ++
Sbjct: 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 72
Query: 85 LIEKAISIDKSCMFAYETL 103
L+++ + + + L
Sbjct: 73 LMQQTEQMARQHDVWHYAL 91
Score = 31.8 bits (70), Expect = 0.012
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 22 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR----- 76
+ + A+ + +F+ AE + L+L +
Sbjct: 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304
Query: 77 GNVDEAIKLIEKAISI 92
G +A +++ A+ +
Sbjct: 305 GRKSDAQRVLLDALKL 320
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 41.1 bits (95), Expect = 6e-06
Identities = 7/83 (8%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
+QS + ++ + + C L + + + + + +
Sbjct: 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM- 283
Query: 71 LMLQARGNVDEAIKLIEKAISID 93
L E ++ ++D
Sbjct: 284 RALDPLLYEKETLQYFSTLKAVD 306
Score = 38.4 bits (88), Expect = 6e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+ +S KE + + + L + L +YF+ VDP A+
Sbjct: 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 313
Query: 68 RAMLMLQARGNVDEAIKLIEKA 89
L+++ ++ ++ +E A
Sbjct: 314 ---DDLRSKFLLENSVLKMEYA 332
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 39.3 bits (91), Expect = 1e-05
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH--RAMLMLQARGNVDEAIKLIEKAISI 92
LV ED E+ F + S ++ + ++ + I L+E+ +
Sbjct: 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK 65
Query: 93 DKSCMFAY 100
Sbjct: 66 GSKEEQRD 73
Score = 30.5 bits (68), Expect = 0.019
Identities = 6/73 (8%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 1 MIVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
++ + + + + + S + A ++++ A +Y ++ +
Sbjct: 43 LVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 102
Query: 59 PENASLYVHRAML 71
P+N ++
Sbjct: 103 PQNNQAKELERLI 115
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 37.9 bits (87), Expect = 4e-05
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
++ + +LK + + + T A V ++ D++ E ++I V EN Y
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 66 VHRAMLM------LQARGNVDEAIKLIEKAISIDKS 95
A +AI K+++ ++
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 31.8 bits (71), Expect = 0.008
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI + +
Sbjct: 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN 71
Query: 97 MFAYETLGTIEVQR 110
Y + +
Sbjct: 72 REDYRQIAKAYARI 85
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 38.7 bits (89), Expect = 4e-05
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 28 VEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85
VEA +L+ + D++D+ GA + F+ V ++ + + + N+ EA K
Sbjct: 3 VEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTI-LKNMTEAEKA 58
Query: 86 IEKAISIDKSCM 97
++I+ DK
Sbjct: 59 FTRSINRDKHLA 70
Score = 34.0 bits (77), Expect = 0.002
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
A + +E++ AEE + + E +D+A++ + K +
Sbjct: 127 AFMYAKKEEWKKAEEQLALATSMKSE-------------PRHSKIDKAMECVWKQKLYE 172
Score = 33.7 bits (76), Expect = 0.002
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D++ + +L F D HS C + ++ AE+ F RSI D ++
Sbjct: 17 DKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVA 72
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFAYETLGTIEVQRTFVVLW 116
+ ++ D AIK +++A+ + + Y+ LG VL+
Sbjct: 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 37.9 bits (86), Expect = 8e-05
Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
D ++ ++ LK+ D + + +Q + + + + +
Sbjct: 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212
Query: 66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
+ + G++D A L + A++ + +
Sbjct: 213 FYLGKY-YLSLGDLDSATALFKLAVANNVHNFVEH 246
Score = 37.1 bits (84), Expect = 2e-04
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
+E+ + + ++ E + + D D A F ++ + N + +
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248
Query: 68 RAMLMLQARG 77
A+L L G
Sbjct: 249 -ALLELSLLG 257
Score = 26.3 bits (56), Expect = 0.93
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
R+EQ L T + + A F++++ + P+ ++ +
Sbjct: 20 ARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76
Query: 68 RAMLMLQ 74
+ + Q
Sbjct: 77 LGIYLTQ 83
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 32.4 bits (72), Expect = 0.007
Identities = 9/84 (10%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 1 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
+ ++ ++ + +A AQ +++D A ++ + PE
Sbjct: 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143
Query: 61 NASLYVHRAMLMLQARGNVDEAIK 84
+ ++ + Q + K
Sbjct: 144 DKAIQAELLKV-KQKIKAQKDKEK 166
Score = 28.5 bits (62), Expect = 0.16
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
++R Q D+A+ ++KA I L ++
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 31.8 bits (71), Expect = 0.009
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83
S ++ A A + ++ A E ++++ +D N R + A
Sbjct: 60 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGE-AQLLMNEFESAK 118
Query: 84 KLIEKAISIDKSCMFAYETLGTIEVQ 109
EK + ++ A + + +
Sbjct: 119 GDFEKVLEVNPQNKAARLQIFMCQKK 144
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 31.3 bits (71), Expect = 0.011
Identities = 5/68 (7%), Positives = 17/68 (25%)
Query: 40 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
D D + + ++ + G A + ++ +++
Sbjct: 50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109
Query: 100 YETLGTIE 107
+E
Sbjct: 110 GALKSMVE 117
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 31.2 bits (69), Expect = 0.013
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 33/106 (31%)
Query: 37 VLVDQEDFDGAEEYFNRSIRVDPE---------------------------------NAS 63
+ + D A + ++ +I++DP +
Sbjct: 12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 71
Query: 64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
R L+ +EA + E+ + + + E L +E +
Sbjct: 72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 28.3 bits (62), Expect = 0.11
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM------LMLQARGNVDE 81
E +V + D+ E + +++R E + + + +G++D+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 82 AIKLIEKAISIDKSCMFAYETLGTIE 107
A+ L +K + +D A L E
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFE 90
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 27.3 bits (59), Expect = 0.32
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
+++ + G ++EA + + KA S++ + + +
Sbjct: 103 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 26.9 bits (58), Expect = 0.54
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 46 GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF------A 99
G + F+ S E A+ +A + + R ++ A KA K
Sbjct: 20 GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNT 79
Query: 100 YETLGTI 106
Y
Sbjct: 80 YVEAYKC 86
Score = 26.1 bits (56), Expect = 1.1
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
++ E NF D+ + + A D E + F+ +R+D ++
Sbjct: 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276
Score = 24.5 bits (52), Expect = 3.8
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 29 EACTLF---AQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQARGNV 79
EA L A + +++ + A + F ++ + E + YV ++ GN
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK-CFKSGGNS 93
Query: 80 DEAIKLIEKAISIDKSCMF 98
A+ +E AI I
Sbjct: 94 VNAVDSLENAIQIFTHRGQ 112
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.8 bits (55), Expect = 1.2
Identities = 7/58 (12%), Positives = 15/58 (25%)
Query: 50 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
N + R A + + A +K + + + A L +
Sbjct: 83 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit
tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 145
Score = 24.8 bits (52), Expect = 2.6
Identities = 2/44 (4%), Positives = 10/44 (22%)
Query: 73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116
++ + E + G + ++ +
Sbjct: 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI 50
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 23.9 bits (52), Expect = 4.1
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 1 MIVPGDRERVEQSLKEFRNFVDTHSNVVE 29
++P E++ + ++ F+ T+ +
Sbjct: 57 RLLPTLYEKIREFKEDLEQFLKTYQGTED 85
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 24.3 bits (51), Expect = 4.3
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 59 PENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
E Y+ + G DEA +A+ I +
Sbjct: 4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE 46
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 23.8 bits (50), Expect = 6.8
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 77 GNVDEAIKLIEKAISIDKSC 96
G++ A ++++ A +
Sbjct: 31 GSLKTAFEMVDAAYNAGAEV 50
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 23.5 bits (50), Expect = 8.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 69 AMLMLQARGNVDEAIKLIEKAI 90
+ML+ N + + +E A+
Sbjct: 299 VAMMLRHSLNAEPWAQRVEAAV 320
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
synthetase ATP-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 23.2 bits (50), Expect = 9.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 60 ENASLYVHRAMLMLQARGNVDEAIKLIE 87
+ L ++R+ M Q + A+K IE
Sbjct: 115 QTVFLGLNRSDYMFQRSADGSPALKQIE 142
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 82
Score = 22.4 bits (48), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 31 CTLFAQVLVDQEDFDGAEE 49
C+L V+ D+ED E
Sbjct: 50 CSLMIDVVFDKEDLAEYYE 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,871
Number of extensions: 17864
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 69
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.6 bits)