BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12724
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 17/161 (10%)
Query: 16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
++YDV I+ G +F SF + D + + +I +QD V+ +
Sbjct: 65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
YTV + D+ ++GN AV KC IPS V YV V SW D ++ + ++L+
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-------VSLVSGSRFLITS 177
Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
+G L+I+DV EDG +Y+C T+HR TGETR S + RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW 47
AV+ + Y +V D ++GN AVFKC +PS V ++ VVSW
Sbjct: 120 AVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSW 160
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 17/161 (10%)
Query: 16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
++YDV I+ G +F SF + D + + +I +QD V+ +
Sbjct: 65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
YTV + D+ ++GN AV KC IPS V YV V SW D ++ + ++L+
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-------VSLVSGSRFLITS 177
Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
+G L+I+DV EDG +Y+C T+HR TGETR S + RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW 47
AV+ + Y +V D ++GN AVFKC +PS V ++ VVSW
Sbjct: 120 AVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSW 160
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 17/161 (10%)
Query: 16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
++YDV I+ G +F SF + D + + +I +QD V+ +
Sbjct: 65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
YTV + D+ ++GN AV KC IPS V Y+ V SW D ++ + ++L+
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDT-------VSLVSGSRFLITS 177
Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
+G L+I+DV EDG +Y+C T+HR TGETR S + RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW 47
AV+ + Y +V D ++GN AVFKC +PS V ++ VVSW
Sbjct: 120 AVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSW 160
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 10/126 (7%)
Query: 36 SFVSDHLDVVSWADTDGGQYQIDNQDF--VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
SF+ D+ D A+ G+ + N V + YTV + D+ ++GN AV KC IPS V
Sbjct: 94 SFIHDN-DYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
+YV+V SW D ++ + + ++ + G L+I DV ED +Y+C T+H+ +
Sbjct: 153 QEYVSVVSWEKDT-------VSITPENRFFITSHGGLYISDVQKEDALSTYRCITQHKYS 205
Query: 154 GETRLS 159
GETR S
Sbjct: 206 GETRQS 211
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQ 66
AV + Y +V D ++GN AVFKC +PS V +++ VVSW + D +N+ F+ S
Sbjct: 121 AVFREPYTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSW-EKDTVSITPENRFFITSH 179
Query: 67 S--YTVNIMDEHVL 78
Y ++ E L
Sbjct: 180 GGLYISDVQKEDAL 193
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 36 SFVSDHLDVVSWADTDGGQYQIDN--QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
SF+ D+ D A+ G+ + N V + YTV + D+ ++GN AV KC IPS V
Sbjct: 94 SFIHDN-DYFCTAENAAGKIRSPNIRVKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
+YV+V SW D ++ + ++ + G L+I DV ED +Y+C TKH+ +
Sbjct: 153 QEYVSVVSWEKDT-------VSIIPEHRFFITYHGGLYISDVQKEDALSTYRCITKHKYS 205
Query: 154 GETRLS 159
GETR S
Sbjct: 206 GETRQS 211
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 63 VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
VV+Q+Y V++ +G +A+L+C +P+FV + V V SW+ + +++ + DGK+
Sbjct: 128 VVAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPA--IYIYPSLQGDGKF 185
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGE------TRLSATKGRLVI 167
+LP+GEL I ++ D +S++CR+ HRLT + TRL R +I
Sbjct: 186 HLLPTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGII 236
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW 47
AV++Q Y+ V + +G A+ +C +P+FV + + VVSW
Sbjct: 127 AVVAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSW 167
>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1
Length = 1114
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 60 QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPS----FVADYVAVESWISDQGEELFVDMT 115
QDF + + + + DE GN+AV+ CH+P Y + W+
Sbjct: 128 QDFKLDVQHVIEV-DE----GNTAVIACHLPESHPKAQVRYSVKQEWL------------ 170
Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
E++ G YL++PSG L I + ED Y+C + +T E + S + RL +
Sbjct: 171 EASRGNYLIMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSSDRLRV 221
>sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes
OS=Xenopus laevis GN=cdon PE=2 SV=1
Length = 1249
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 39 SDHLDVVSWADTDGGQYQI---DNQDFVVSQSYTVNI--------MDEHVL---KGNSAV 84
S HL + S GQYQ + ++S+S +V++ H + +G+SA
Sbjct: 80 SGHLVIPSLGPAHVGQYQCIASTSVGAILSKSVSVSVAYLNDFETTTGHSVTAEEGSSAF 139
Query: 85 LKCHIPSFVAD----YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDG 140
+ C IP Y W+ ES+D KYL+LPSG LHI +V ED
Sbjct: 140 IGCKIPESNPKAHVRYKVRGKWLK-----------ESSD-KYLILPSGNLHILNVSVED- 186
Query: 141 YKSYQCRTKHRLTGETRLSATKGRLVI 167
+Y+C + +T + +LS + +L +
Sbjct: 187 RGTYRCAAYNPVTHDLKLSTSTLKLSV 213
>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2
Length = 1110
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 60 QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIP----SFVADYVAVESWISDQGEELFVDMT 115
QDF + + + + DE GN+AV+ CH+P Y + W+
Sbjct: 123 QDFKLDVQHVIEV-DE----GNTAVIACHLPESHPKAQVRYSVKQEWL------------ 165
Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
E++ YL++PSG L I + ED Y+C + +T E + S + RL +
Sbjct: 166 EASRDNYLIMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSGDRLRV 216
>sp|Q32MD9|CDON_MOUSE Cell adhesion molecule-related/down-regulated by oncogenes OS=Mus
musculus GN=Cdon PE=1 SV=2
Length = 1250
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
+ G Y++LPSG L + +V +D SY+C + +T E ++ T +L++
Sbjct: 163 STGNYIILPSGNLQVLNVSSKD-KGSYKCAAYNPVTSELKVEPTGRKLLV 211
>sp|Q2VWP9|PRTG_RAT Protogenin OS=Rattus norvegicus GN=Prtg PE=2 SV=1
Length = 1193
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
++ V+ + V +G A C I S AV +W + + MT D + LP
Sbjct: 130 AFEVHPVSTEVPEGGVARFSCKISSTPP---AVITW---EFNRTALPMT--MDSRVTALP 181
Query: 127 SGELHIRDVGPEDGYKSYQC 146
SG L I D GPED K Y+C
Sbjct: 182 SGVLQIYDAGPEDAGK-YRC 200
>sp|O35158|CDON_RAT Cell adhesion molecule-related/down-regulated by oncogenes
OS=Rattus norvegicus GN=Cdon PE=1 SV=2
Length = 1256
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
+ G Y++LPSG L I +V +D SY+C + +T E ++ +L++
Sbjct: 163 STGNYIILPSGNLQILNVSSKD-KGSYKCAAYNPVTSELKVEPAGRKLLV 211
>sp|Q2EY15|PRTG_MOUSE Protogenin OS=Mus musculus GN=Prtg PE=2 SV=1
Length = 1191
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
++ V+ + V +G A C I S AV +W E +T + LP
Sbjct: 130 AFEVHPVSTEVHEGGVARFSCKISSTPP---AVITW------EFNRTALPTTMDRVTALP 180
Query: 127 SGELHIRDVGPEDGYKSYQC 146
SG L I DVGPED +Y+C
Sbjct: 181 SGVLQIYDVGPEDA-GNYRC 199
>sp|Q3UH53|SDK1_MOUSE Protein sidekick-1 OS=Mus musculus GN=Sdk1 PE=2 SV=1
Length = 2193
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 112 VDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
V +++ + +Y VLPSG LHI+ + PED +QC
Sbjct: 407 VPLSKLQNPRYKVLPSGGLHIQKLSPEDS-GIFQC 440
>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5
PE=2 SV=3
Length = 2828
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 36 SFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVAD 95
S+ + + +S DT Q + +V+ + D+ VL+G L C++ + +
Sbjct: 454 SYYTQYSQTISTKDT----RQARGRSWVMIEPSGAVQRDQTVLEGGPCQLSCNVKASESP 509
Query: 96 YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
+ W+ G L M + D K+ +L SG L I+ + P D YQC
Sbjct: 510 SIF---WVLPDGSILKAPM-DDPDSKFSILSSGWLRIKSMEPSDS-GLYQC 555
>sp|Q2NC49|PPK_ERYLH Polyphosphate kinase OS=Erythrobacter litoralis (strain HTCC2594)
GN=ppk PE=3 SV=1
Length = 715
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD 134
E VL ++ +P A Y+++ES I+ +ELF DG + VL ++ I++
Sbjct: 186 EMVLIPSALPRFIRVPGEDALYISIESLITRFAKELFPGFEIVGDGTFRVLRDSDIEIQE 245
Query: 135 VGPEDGYKSYQCRTKHRLTGE 155
ED ++++ + R G+
Sbjct: 246 EA-EDLVRTFRSAIQRRRRGQ 265
>sp|Q4KMG0|CDON_HUMAN Cell adhesion molecule-related/down-regulated by oncogenes OS=Homo
sapiens GN=CDON PE=1 SV=2
Length = 1287
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
E + YL+LPSG L I +V ED SY+C + +T + ++ +L++
Sbjct: 162 EHSTENYLILPSGNLQILNVSLED-KGSYKCAAYNPVTHQLKVEPIGRKLLV 212
>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2
Length = 1479
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 40/161 (24%)
Query: 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVS------------- 65
D VI+G F+C + V++W G Q +D + V+S
Sbjct: 441 DRVVIEGQTVDFQCEA---KGNPPPVIAWTK-GGSQLSVDRRHLVLSSGTLRISGVALHD 496
Query: 66 ----QSYTVNIMDEHVLKGNSAVLKCHIPSF--------VADYVAVESWISDQGE----- 108
+ VNI+ + + V P F V V+ S QGE
Sbjct: 497 QGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDTTVEVGANVQLPCSSQGEPEPAI 556
Query: 109 ---ELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
+ V +TES GK+ + P G L I DVGP D + Y+C
Sbjct: 557 TWNKDGVQVTES--GKFHISPEGFLTINDVGPADAGR-YEC 594
>sp|B1JER5|HEMH_PSEPW Ferrochelatase OS=Pseudomonas putida (strain W619) GN=hemH PE=3
SV=1
Length = 337
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL 125
+ YT +DE + K + L P+FVAD + I D+G+E F++ G+ LVL
Sbjct: 262 EPYTETRLDE-LAKAGAKKLLVMCPAFVADCIETLEEIGDRGKEQFIE----AGGEELVL 316
>sp|A8X2U9|SBP_CAEBR Putative selenium-binding protein OS=Caenorhabditis briggsae
GN=CBG06685 PE=3 SV=2
Length = 514
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 88 HIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH 131
H+PS + VE+W+SD+ L DM S D ++L + G LH
Sbjct: 331 HVPS-----LKVENWVSDEMPALLTDMIISMDDRWLYV-CGFLH 368
>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1
Length = 1493
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 51 DGGQYQ----IDNQDFVVSQS----------YTVNIMDEHVLKGNSAVLKCHIPSFVADY 96
D G YQ +DN +VS++ +T V GNSA+L C + AD
Sbjct: 134 DEGFYQCVATVDNLGTIVSRTAKLTVAGLPRFTSQPEPSSVYVGNSAILNCEV---NADL 190
Query: 97 VAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
V W ++ L D + + LPSG L I + DG Y+C
Sbjct: 191 VPFVRWEQNRQPLLL-------DDRIVKLPSGTLVISNATEGDG-GLYRC 232
>sp|Q90610|NEO1_CHICK Neogenin (Fragment) OS=Gallus gallus PE=2 SV=1
Length = 1443
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V KGNSA+L C + +A +V W D+ S D + LPSG L I +
Sbjct: 129 VYKGNSAILNCEVNVDLAPFV---RWEQDR-------QPLSLDDRVFKLPSGALLIGNAT 178
Query: 137 PEDGYKSYQC 146
DG Y+C
Sbjct: 179 DTDG-GFYRC 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,066,346
Number of Sequences: 539616
Number of extensions: 2713823
Number of successful extensions: 5601
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5575
Number of HSP's gapped (non-prelim): 34
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)