Query psy12724
Match_columns 167
No_of_seqs 183 out of 1427
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:04:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 1E-20 2.2E-25 170.6 14.8 136 11-161 332-514 (1051)
2 KOG3513|consensus 99.8 4.1E-19 8.9E-24 160.4 12.7 132 17-160 248-420 (1051)
3 KOG4221|consensus 99.7 2.8E-17 6.1E-22 149.0 15.2 136 12-162 142-329 (1381)
4 PHA02826 IL-1 receptor-like pr 99.7 7.7E-17 1.7E-21 126.5 14.6 129 16-152 28-211 (227)
5 cd05852 Ig5_Contactin-1 Fifth 99.7 1.2E-17 2.5E-22 109.0 7.7 62 80-152 1-62 (73)
6 KOG4194|consensus 99.7 1.1E-17 2.3E-22 143.8 9.6 141 10-160 503-703 (873)
7 KOG4221|consensus 99.7 3.8E-17 8.3E-22 148.1 13.1 143 6-162 37-230 (1381)
8 cd05745 Ig3_Peroxidasin Third 99.7 5.9E-17 1.3E-21 105.5 7.6 63 79-152 1-63 (74)
9 KOG4222|consensus 99.7 9.6E-17 2.1E-21 144.9 9.3 137 13-160 34-222 (1281)
10 KOG4194|consensus 99.7 2.4E-16 5.1E-21 135.7 10.5 130 9-152 611-784 (873)
11 cd05851 Ig3_Contactin-1 Third 99.7 6.3E-16 1.4E-20 104.1 9.7 74 67-152 3-76 (88)
12 cd05724 Ig2_Robo Second immuno 99.6 2E-15 4.3E-20 100.3 9.5 72 72-152 3-74 (86)
13 cd04969 Ig5_Contactin_like Fif 99.6 9.7E-16 2.1E-20 99.4 7.7 62 80-152 1-62 (73)
14 cd05892 Ig_Myotilin_C C-termin 99.6 7.5E-16 1.6E-20 101.0 7.1 60 83-152 1-64 (75)
15 cd05845 Ig2_L1-CAM_like Second 99.6 1.6E-15 3.4E-20 103.7 8.4 79 73-160 11-90 (95)
16 cd05723 Ig4_Neogenin Fourth im 99.6 1.3E-15 2.9E-20 98.3 7.4 60 82-152 1-60 (71)
17 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.2E-15 2.6E-20 99.3 7.2 69 83-160 1-73 (74)
18 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.4E-15 3.1E-20 99.3 7.5 64 80-152 1-64 (76)
19 cd05893 Ig_Palladin_C C-termin 99.6 1.3E-15 2.8E-20 99.8 6.6 60 83-152 1-64 (75)
20 cd05728 Ig4_Contactin-2-like F 99.6 2.2E-15 4.7E-20 100.7 7.8 72 69-152 3-74 (85)
21 cd05853 Ig6_Contactin-4 Sixth 99.6 2.5E-15 5.4E-20 100.8 8.0 75 81-161 1-82 (85)
22 cd05746 Ig4_Peroxidasin Fourth 99.6 1.5E-15 3.3E-20 97.5 6.4 59 83-152 1-59 (69)
23 cd05726 Ig4_Robo Fhird immunog 99.6 4.8E-15 1E-19 99.9 8.9 79 80-162 1-83 (90)
24 cd05762 Ig8_MLCK Eighth immuno 99.6 5.6E-15 1.2E-19 101.5 9.3 81 69-160 4-90 (98)
25 cd05865 Ig1_NCAM-1 First immun 99.6 5E-15 1.1E-19 101.5 9.0 73 71-152 6-83 (96)
26 cd05722 Ig1_Neogenin First imm 99.6 5.6E-15 1.2E-19 100.5 9.2 76 68-152 2-83 (95)
27 cd05868 Ig4_NrCAM Fourth immun 99.6 3.4E-15 7.5E-20 97.8 7.8 64 80-152 1-64 (76)
28 KOG4222|consensus 99.6 2.1E-15 4.5E-20 136.4 8.9 134 5-152 126-301 (1281)
29 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5.1E-15 1.1E-19 99.3 8.6 68 75-152 5-75 (86)
30 cd05866 Ig1_NCAM-2 First immun 99.6 7.9E-15 1.7E-19 99.8 9.5 72 70-152 5-79 (92)
31 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1E-14 2.2E-19 99.9 10.0 78 70-152 6-87 (98)
32 cd04968 Ig3_Contactin_like Thi 99.6 7.4E-15 1.6E-19 98.4 8.6 69 72-152 8-76 (88)
33 cd05727 Ig2_Contactin-2-like S 99.6 5.1E-15 1.1E-19 101.3 7.8 79 75-160 13-91 (96)
34 cd05764 Ig_2 Subgroup of the i 99.6 1E-14 2.2E-19 94.5 8.6 63 80-152 1-63 (74)
35 cd05737 Ig_Myomesin_like_C C-t 99.6 1.1E-14 2.4E-19 98.6 8.5 68 74-152 10-81 (92)
36 cd05725 Ig3_Robo Third immunog 99.6 7.8E-15 1.7E-19 94.0 7.1 58 83-152 1-58 (69)
37 cd04975 Ig4_SCFR_like Fourth i 99.6 9.9E-15 2.1E-19 100.9 8.0 69 74-152 12-88 (101)
38 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.2E-14 2.5E-19 94.5 7.5 64 80-152 1-64 (76)
39 PHA02785 IL-beta-binding prote 99.6 8.2E-14 1.8E-18 114.7 14.2 121 19-152 35-200 (326)
40 cd05730 Ig3_NCAM-1_like Third 99.6 2.3E-14 5E-19 97.3 8.8 69 74-152 12-81 (95)
41 cd04974 Ig3_FGFR Third immunog 99.6 1.6E-14 3.4E-19 97.5 8.0 73 80-160 1-89 (90)
42 cd05747 Ig5_Titin_like M5, fif 99.6 3.1E-14 6.7E-19 96.3 9.2 72 70-152 8-82 (92)
43 cd05740 Ig_CEACAM_D4 Fourth im 99.6 2.6E-14 5.6E-19 96.9 8.5 68 73-153 11-79 (91)
44 PHA02785 IL-beta-binding prote 99.6 1.3E-13 2.8E-18 113.5 14.2 135 17-157 128-320 (326)
45 cd05735 Ig8_DSCAM Eight immuno 99.6 2.2E-14 4.8E-19 96.5 7.9 72 80-161 1-82 (88)
46 cd05744 Ig_Myotilin_C_like Imm 99.6 1.8E-14 3.9E-19 94.2 7.2 60 83-152 1-64 (75)
47 cd05763 Ig_1 Subgroup of the i 99.5 2E-14 4.3E-19 93.5 7.3 62 83-152 1-63 (75)
48 cd05743 Ig_Perlecan_D2_like Im 99.5 1.6E-14 3.6E-19 94.8 6.8 62 80-152 1-65 (78)
49 cd05849 Ig1_Contactin-1 First 99.5 4E-14 8.7E-19 96.4 8.8 62 80-152 19-81 (93)
50 cd05848 Ig1_Contactin-5 First 99.5 5.2E-14 1.1E-18 95.9 8.6 72 71-152 7-82 (94)
51 cd05850 Ig1_Contactin-2 First 99.5 7.1E-14 1.5E-18 95.1 9.1 76 68-153 4-83 (94)
52 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.1E-14 6.8E-19 95.9 7.2 69 73-152 8-79 (90)
53 cd05873 Ig_Sema4D_like Immunog 99.5 3.5E-14 7.7E-19 95.6 7.4 69 72-152 3-71 (87)
54 cd05882 Ig1_Necl-1 First (N-te 99.5 1.1E-13 2.5E-18 94.6 9.9 80 72-155 4-88 (95)
55 cd07693 Ig1_Robo First immunog 99.5 1.4E-13 2.9E-18 93.3 9.8 79 68-152 4-87 (100)
56 PF07679 I-set: Immunoglobulin 99.5 1.2E-13 2.7E-18 92.2 9.5 74 68-152 3-79 (90)
57 cd04973 Ig1_FGFR First immunog 99.5 9.4E-14 2E-18 91.5 8.5 67 73-152 2-68 (79)
58 cd05876 Ig3_L1-CAM Third immun 99.5 4.8E-14 1E-18 91.0 6.9 59 83-152 1-59 (71)
59 cd05854 Ig6_Contactin-2 Sixth 99.5 7.8E-14 1.7E-18 93.3 7.9 73 81-161 1-82 (85)
60 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 8.5E-14 1.9E-18 89.6 7.8 59 80-152 1-59 (69)
61 cd05857 Ig2_FGFR Second immuno 99.5 8E-14 1.7E-18 92.5 7.9 70 75-152 4-74 (85)
62 cd05765 Ig_3 Subgroup of the i 99.5 8.6E-14 1.9E-18 91.3 7.7 68 80-152 1-70 (81)
63 cd05734 Ig7_DSCAM Seventh immu 99.5 7.2E-14 1.6E-18 91.8 7.3 66 83-153 1-68 (79)
64 cd05760 Ig2_PTK7 Second immuno 99.5 1.1E-13 2.4E-18 90.7 8.0 60 83-152 1-61 (77)
65 cd05756 Ig1_IL1R_like First im 99.5 9.8E-14 2.1E-18 94.7 7.9 74 74-152 8-83 (94)
66 cd04977 Ig1_NCAM-1_like First 99.5 1.6E-13 3.5E-18 93.0 8.9 72 70-152 5-80 (92)
67 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.3E-13 2.9E-18 93.4 8.5 76 71-152 7-85 (96)
68 cd05864 Ig2_VEGFR-2 Second imm 99.5 7.1E-14 1.5E-18 90.4 6.4 57 83-152 1-57 (70)
69 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.7E-13 3.8E-18 93.5 8.6 73 74-152 10-86 (97)
70 cd04976 Ig2_VEGFR Second immun 99.5 1.2E-13 2.5E-18 89.3 7.1 59 83-153 1-59 (71)
71 cd04970 Ig6_Contactin_like Six 99.5 1.5E-13 3.3E-18 91.5 7.8 73 81-161 1-82 (85)
72 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.6E-13 3.4E-18 94.9 8.1 68 74-152 12-88 (101)
73 cd05858 Ig3_FGFR-2 Third immun 99.5 1.5E-13 3.3E-18 92.6 7.7 73 80-160 1-89 (90)
74 cd05891 Ig_M-protein_C C-termi 99.5 2.1E-13 4.6E-18 92.4 8.4 69 73-152 9-81 (92)
75 cd05758 Ig5_KIRREL3-like Fifth 99.5 3.2E-13 6.8E-18 92.4 8.6 70 74-152 10-88 (98)
76 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.7E-13 3.6E-18 88.0 6.5 55 83-153 1-55 (67)
77 cd07702 Ig2_VEGFR-1 Second imm 99.5 1E-13 2.3E-18 90.1 5.7 64 83-157 1-64 (72)
78 cd05736 Ig2_Follistatin_like S 99.5 2.4E-13 5.1E-18 88.6 7.3 70 83-161 1-74 (76)
79 cd05748 Ig_Titin_like Immunogl 99.5 3.3E-13 7.2E-18 87.4 7.8 60 82-152 1-63 (74)
80 cd05757 Ig2_IL1R_like Second i 99.5 3.5E-13 7.5E-18 91.7 8.1 69 75-152 5-75 (92)
81 cd05749 Ig2_Tyro3_like Second 99.5 2.7E-13 5.8E-18 90.1 6.9 68 70-153 3-71 (81)
82 cd05855 Ig_TrkB_d5 Fifth domai 99.4 2.5E-13 5.3E-18 89.9 6.4 64 85-159 3-75 (79)
83 cd05733 Ig6_L1-CAM_like Sixth 99.4 3.5E-13 7.5E-18 88.4 7.1 61 83-152 1-66 (77)
84 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 3.4E-13 7.3E-18 89.6 6.6 66 85-161 3-79 (81)
85 cd05856 Ig2_FGFRL1-like Second 99.4 4.3E-13 9.3E-18 87.9 6.9 67 76-152 5-71 (82)
86 cd05731 Ig3_L1-CAM_like Third 99.4 4.5E-13 9.7E-18 85.7 6.5 58 83-152 1-59 (71)
87 cd05875 Ig6_hNeurofascin_like 99.4 7.5E-13 1.6E-17 86.9 7.7 62 83-153 1-67 (77)
88 cd05874 Ig6_NrCAM Sixth immuno 99.4 1E-12 2.3E-17 86.2 7.6 61 83-152 1-66 (77)
89 cd07701 Ig1_Necl-3 First (N-te 99.4 1.7E-12 3.7E-17 88.6 8.5 77 72-152 4-85 (95)
90 cd05773 Ig8_hNephrin_like Eigh 99.4 2.2E-12 4.7E-17 90.2 8.6 72 79-160 22-104 (109)
91 cd05754 Ig3_Perlecan_like Thir 99.4 2.5E-12 5.5E-17 85.5 7.5 67 73-152 9-75 (85)
92 cd04967 Ig1_Contactin First Ig 99.4 2.6E-12 5.6E-17 86.6 6.8 65 79-153 18-83 (91)
93 cd05752 Ig1_FcgammaR_like Frst 99.4 5.9E-12 1.3E-16 83.0 8.3 69 72-159 7-77 (78)
94 cd04979 Ig_Semaphorin_C Immuno 99.3 7.4E-12 1.6E-16 84.0 8.3 70 74-152 5-74 (89)
95 cd05717 Ig1_Necl-1-3_like Firs 99.3 2.7E-11 5.8E-16 82.2 9.6 76 73-152 5-85 (95)
96 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1E-11 2.2E-16 80.8 6.9 64 83-152 1-67 (76)
97 cd05750 Ig_Pro_neuregulin Immu 99.3 1.5E-11 3.3E-16 79.3 6.7 61 84-152 2-66 (75)
98 cd05742 Ig1_VEGFR_like First i 99.3 1.9E-11 4.1E-16 81.1 6.6 68 80-152 1-72 (84)
99 cd05871 Ig_Semaphorin_classIII 99.2 5E-11 1.1E-15 80.8 8.5 70 75-152 6-76 (91)
100 smart00408 IGc2 Immunoglobulin 99.2 7.4E-11 1.6E-15 72.1 7.6 62 79-152 1-62 (63)
101 cd05753 Ig2_FcgammaR_like Seco 99.2 1E-10 2.2E-15 77.8 7.7 65 73-152 7-71 (83)
102 cd05729 Ig2_FGFR_like Second i 99.2 2.8E-10 6.1E-15 74.6 8.7 66 76-152 5-74 (85)
103 cd07690 Ig1_CD4 First immunogl 99.1 2.5E-10 5.4E-15 77.9 7.9 73 76-152 3-88 (94)
104 cd05898 Ig5_KIRREL3 Fifth immu 99.1 5.5E-10 1.2E-14 76.8 9.5 72 73-153 9-89 (98)
105 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 2.6E-10 5.6E-15 76.0 7.6 66 80-152 1-69 (84)
106 cd05872 Ig_Sema4B_like Immunog 99.1 1.6E-10 3.6E-15 77.4 6.5 66 73-151 4-69 (85)
107 PF00047 ig: Immunoglobulin do 99.1 1.8E-10 3.8E-15 72.1 5.8 59 80-148 1-64 (64)
108 cd05897 Ig2_IL1R2_like Second 99.1 4.2E-10 9.2E-15 76.9 7.1 71 75-152 5-78 (95)
109 cd05881 Ig1_Necl-2 First (N-te 99.1 1.8E-09 3.9E-14 73.8 9.8 77 73-153 5-86 (95)
110 smart00409 IG Immunoglobulin. 99.1 2.4E-09 5.2E-14 68.8 9.4 69 74-152 3-74 (86)
111 smart00410 IG_like Immunoglobu 99.1 2.4E-09 5.2E-14 68.8 9.4 69 74-152 3-74 (86)
112 cd04983 IgV_TCR_alpha_like Imm 99.1 1.6E-09 3.4E-14 74.9 8.9 89 74-166 7-107 (109)
113 cd05774 Ig_CEACAM_D1 First imm 99.0 2.4E-09 5.3E-14 74.4 9.0 78 71-152 4-93 (105)
114 cd05741 Ig_CEACAM_D1_like Firs 99.0 4.6E-09 1E-13 70.3 9.1 69 80-152 1-80 (92)
115 cd05862 Ig1_VEGFR First immuno 99.0 2.8E-09 6.1E-14 71.3 7.5 77 80-160 1-84 (86)
116 PF13895 Ig_2: Immunoglobulin 99.0 9.3E-09 2E-13 66.3 9.2 63 72-152 6-68 (80)
117 cd00099 IgV Immunoglobulin var 98.9 6.5E-09 1.4E-13 71.1 8.2 89 76-167 2-105 (105)
118 cd05885 Ig2_Necl-4 Second immu 98.9 3.6E-09 7.9E-14 70.0 6.2 65 82-152 1-66 (80)
119 cd05899 IgV_TCR_beta Immunoglo 98.9 1.7E-08 3.8E-13 70.1 9.1 89 74-167 7-110 (110)
120 cd05713 Ig_MOG_like Immunoglob 98.9 2.9E-08 6.4E-13 67.6 9.7 72 80-152 1-88 (100)
121 cd05879 Ig_P0 Immunoglobulin ( 98.9 2.1E-08 4.6E-13 70.9 9.0 78 74-152 7-103 (116)
122 cd05900 Ig_Aggrecan Immunoglob 98.9 2.1E-08 4.5E-13 70.6 8.7 82 79-161 1-109 (112)
123 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.2E-08 4.9E-13 69.1 8.8 83 79-162 1-104 (106)
124 cd05759 Ig2_KIRREL3-like Secon 98.8 2.4E-08 5.3E-13 65.7 8.3 62 82-152 1-69 (82)
125 PHA02826 IL-1 receptor-like pr 98.8 1.3E-08 2.8E-13 80.0 8.0 75 74-152 31-121 (227)
126 cd05775 Ig_SLAM-CD84_like_N N- 98.8 1.9E-08 4.1E-13 68.7 7.5 72 78-152 2-84 (97)
127 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 1.8E-08 4E-13 69.6 7.4 75 75-152 10-93 (104)
128 cd05877 Ig_LP_like Immunoglobu 98.8 3.6E-08 7.9E-13 67.9 8.8 82 79-161 1-103 (106)
129 cd05751 Ig1_LILRB1_like First 98.8 9.8E-09 2.1E-13 69.3 4.4 65 75-151 11-75 (91)
130 cd05878 Ig_Aggrecan_like Immun 98.8 7.5E-08 1.6E-12 67.3 8.9 83 79-162 1-108 (110)
131 PF13927 Ig_3: Immunoglobulin 98.7 4E-08 8.6E-13 62.3 6.6 64 77-150 12-75 (75)
132 cd05718 Ig1_PVR_like First imm 98.7 6.2E-08 1.3E-12 65.6 8.0 70 81-151 1-84 (98)
133 cd05880 Ig_EVA1 Immunoglobulin 98.7 1.1E-07 2.5E-12 66.9 8.7 86 73-159 6-114 (115)
134 cd04980 IgV_L_kappa Immunoglob 98.7 9.2E-08 2E-12 66.0 7.9 75 74-151 9-93 (106)
135 cd05715 Ig_P0-like Immunoglobu 98.7 3.9E-07 8.4E-12 64.0 10.8 78 74-152 7-103 (116)
136 cd04982 IgV_TCR_gamma Immunogl 98.7 1.7E-07 3.7E-12 65.6 8.5 75 75-151 8-99 (116)
137 cd05846 Ig1_MRC-OX-2_like Firs 98.6 2.8E-07 6E-12 62.7 8.4 78 80-160 1-96 (97)
138 cd04984 IgV_L_lambda Immunoglo 98.6 2.1E-07 4.5E-12 63.3 7.6 74 76-151 2-85 (98)
139 cd05749 Ig2_Tyro3_like Second 98.6 5.9E-08 1.3E-12 64.3 4.4 60 13-75 1-69 (81)
140 cd05887 Ig1_Nectin-3_like Firs 98.6 4.1E-07 8.8E-12 62.3 8.6 76 81-160 1-95 (96)
141 cd05851 Ig3_Contactin-1 Third 98.6 3.3E-07 7.1E-12 61.3 7.4 61 11-75 2-75 (88)
142 cd05888 Ig1_Nectin-4_like Frst 98.6 7.8E-07 1.7E-11 61.0 9.3 71 81-152 1-87 (100)
143 PF07686 V-set: Immunoglobulin 98.6 3.7E-07 8E-12 62.4 7.6 75 74-151 10-101 (114)
144 cd05902 Ig_Neurocan Immunoglob 98.6 3.9E-07 8.4E-12 63.9 7.6 82 79-161 1-107 (110)
145 cd05865 Ig1_NCAM-1 First immun 98.5 2.7E-07 5.8E-12 63.0 5.9 60 14-75 4-82 (96)
146 cd05886 Ig1_Nectin-1_like Firs 98.5 1E-06 2.2E-11 60.6 8.6 79 81-160 1-98 (99)
147 cd05762 Ig8_MLCK Eighth immuno 98.5 5.1E-07 1.1E-11 61.7 6.3 62 11-76 1-79 (98)
148 cd05716 Ig_pIgR Immunoglobulin 98.5 1.3E-06 2.9E-11 59.2 8.3 74 76-152 3-87 (98)
149 cd05860 Ig4_SCFR Fourth immuno 98.5 1.2E-06 2.6E-11 60.4 8.0 69 75-152 13-88 (101)
150 cd07693 Ig1_Robo First immunog 98.5 9.5E-07 2.1E-11 59.3 7.2 39 11-52 2-40 (100)
151 cd07706 IgV_TCR_delta Immunogl 98.4 2.4E-06 5.3E-11 59.8 9.0 76 73-151 7-94 (116)
152 cd05712 Ig_Siglec_N Immunoglob 98.4 2.8E-06 6.1E-11 60.0 9.3 78 73-151 7-102 (119)
153 cd05901 Ig_Versican Immunoglob 98.4 3.2E-06 7E-11 59.8 9.3 82 79-161 1-114 (117)
154 cd05722 Ig1_Neogenin First imm 98.4 7.4E-07 1.6E-11 60.2 5.7 38 12-52 1-38 (95)
155 cd05752 Ig1_FcgammaR_like Frst 98.4 2.2E-06 4.9E-11 56.2 7.5 59 14-75 4-68 (78)
156 PF07679 I-set: Immunoglobulin 98.4 1.4E-06 2.9E-11 57.7 6.4 43 11-57 1-43 (90)
157 cd05728 Ig4_Contactin-2-like F 98.4 8.1E-07 1.8E-11 58.9 5.2 59 13-75 2-73 (85)
158 cd05866 Ig1_NCAM-2 First immun 98.4 1.3E-06 2.8E-11 59.2 6.2 59 13-75 3-78 (92)
159 PHA03376 BARF1; Provisional 98.4 4.5E-06 9.8E-11 63.4 9.6 82 70-154 16-112 (221)
160 cd05747 Ig5_Titin_like M5, fif 98.3 1.3E-06 2.8E-11 58.7 5.5 40 10-52 3-42 (92)
161 cd05848 Ig1_Contactin-5 First 98.3 1.1E-06 2.5E-11 59.5 5.2 39 11-52 2-43 (94)
162 cd07700 IgV_CD8_beta Immunoglo 98.3 3.9E-06 8.4E-11 58.1 7.9 73 76-151 2-94 (107)
163 cd04977 Ig1_NCAM-1_like First 98.3 1.7E-06 3.6E-11 58.4 5.8 40 14-57 4-43 (92)
164 cd05889 Ig1_DNAM-1_like First 98.3 4.4E-06 9.5E-11 57.1 7.7 69 81-152 1-83 (96)
165 cd04968 Ig3_Contactin_like Thi 98.3 1.6E-06 3.5E-11 57.6 5.4 60 13-75 4-75 (88)
166 cd05850 Ig1_Contactin-2 First 98.3 1.5E-06 3.4E-11 58.8 5.2 39 11-52 2-43 (94)
167 cd05711 Ig_FcalphaRI Immunoglo 98.3 4.9E-06 1.1E-10 56.4 7.4 66 74-149 9-75 (94)
168 KOG1480|consensus 98.2 1.1E-06 2.3E-11 78.2 4.4 144 11-164 25-224 (909)
169 cd05870 Ig5_NCAM-2 Fifth immun 98.2 7.1E-06 1.5E-10 55.7 7.2 34 15-51 6-39 (98)
170 cd00098 IgC Immunoglobulin Con 98.2 3.4E-06 7.5E-11 56.5 5.5 70 78-153 11-86 (95)
171 cd05849 Ig1_Contactin-1 First 98.2 3.8E-06 8.1E-11 56.9 5.5 39 11-52 2-43 (93)
172 PHA02987 Ig domain OX-2-like p 98.2 2.6E-05 5.6E-10 59.2 10.2 83 75-162 25-123 (189)
173 cd05771 IgC_Tapasin_R Tapasin- 98.2 5.2E-05 1.1E-09 54.7 11.6 111 23-152 9-131 (139)
174 cd05894 Ig_C5_MyBP-C C5 immuno 98.2 6.3E-06 1.4E-10 54.9 6.2 31 19-52 4-34 (86)
175 cd05720 Ig_CD8_alpha Immunoglo 98.2 9.7E-06 2.1E-10 55.9 7.0 71 76-150 2-90 (104)
176 cd04972 Ig_TrkABC_d4 Fourth do 98.1 3.3E-06 7.3E-11 56.4 4.4 35 15-52 5-39 (90)
177 cd05761 Ig2_Necl-1-4_like Seco 98.1 1.5E-05 3.2E-10 52.6 7.3 65 82-152 1-68 (82)
178 cd05724 Ig2_Robo Second immuno 98.1 5.6E-06 1.2E-10 54.4 5.2 34 16-52 2-36 (86)
179 cd05883 Ig2_Necl-2 Second immu 98.1 2.1E-05 4.5E-10 52.3 7.8 64 83-152 2-67 (82)
180 cd05745 Ig3_Peroxidasin Third 98.1 5.4E-06 1.2E-10 53.4 4.7 48 24-75 1-62 (74)
181 smart00406 IGv Immunoglobulin 98.1 1E-05 2.2E-10 52.1 6.0 64 82-147 1-80 (81)
182 cd05852 Ig5_Contactin-1 Fifth 98.1 7.4E-06 1.6E-10 52.9 5.1 47 25-76 1-62 (73)
183 cd04981 IgV_H Immunoglobulin ( 98.1 2.3E-05 5E-10 55.2 8.0 75 74-150 6-97 (117)
184 cd05882 Ig1_Necl-1 First (N-te 98.1 1.3E-05 2.9E-10 54.5 6.4 35 17-54 4-38 (95)
185 cd05764 Ig_2 Subgroup of the i 98.1 1.3E-05 2.9E-10 51.3 6.1 49 25-76 1-63 (74)
186 cd05737 Ig_Myomesin_like_C C-t 98.1 1E-05 2.2E-10 54.3 5.6 34 16-52 7-40 (92)
187 cd05873 Ig_Sema4D_like Immunog 98.1 1.9E-05 4E-10 53.0 6.7 55 16-75 2-70 (87)
188 cd00096 Ig Immunoglobulin doma 98.0 9.2E-06 2E-10 49.1 4.5 65 83-152 1-66 (74)
189 cd07705 Ig2_Necl-1 Second immu 98.0 2.9E-05 6.3E-10 51.5 7.1 64 83-152 2-69 (83)
190 cd05730 Ig3_NCAM-1_like Third 98.0 1.6E-05 3.6E-10 53.4 6.0 34 16-52 9-42 (95)
191 cd04975 Ig4_SCFR_like Fourth i 98.0 1.9E-05 4.2E-10 54.3 6.2 55 18-76 11-88 (101)
192 cd05755 Ig2_ICAM-1_like Second 98.0 3.1E-05 6.6E-10 53.4 6.9 75 73-152 9-85 (100)
193 cd05739 Ig3_RPTP_IIa_LAR_like 98.0 1.3E-05 2.7E-10 51.2 4.4 47 25-75 1-58 (69)
194 cd07694 Ig2_CD4 Second immunog 98.0 8.1E-05 1.8E-09 49.9 8.2 64 74-149 8-71 (88)
195 cd05758 Ig5_KIRREL3-like Fifth 98.0 2.3E-05 5E-10 53.2 5.7 34 17-52 8-41 (98)
196 cd04974 Ig3_FGFR Third immunog 97.9 3E-05 6.5E-10 51.9 6.0 23 25-50 1-23 (90)
197 cd05859 Ig4_PDGFR-alpha Fourth 97.9 3.7E-05 8E-10 52.9 6.0 54 19-76 12-88 (101)
198 cd05868 Ig4_NrCAM Fourth immun 97.9 3.1E-05 6.8E-10 50.2 5.1 27 25-55 1-27 (76)
199 cd04973 Ig1_FGFR First immunog 97.9 3E-05 6.5E-10 50.6 5.1 35 17-56 1-35 (79)
200 cd05756 Ig1_IL1R_like First im 97.9 6.8E-05 1.5E-09 50.8 6.8 33 18-53 7-44 (94)
201 cd05884 Ig2_Necl-3 Second immu 97.9 9.6E-05 2.1E-09 49.0 7.3 64 83-152 2-69 (83)
202 cd05857 Ig2_FGFR Second immuno 97.9 3.9E-05 8.4E-10 50.3 5.4 30 20-52 4-33 (85)
203 cd05735 Ig8_DSCAM Eight immuno 97.9 4.3E-05 9.3E-10 51.0 5.5 24 25-51 1-24 (88)
204 cd05867 Ig4_L1-CAM_like Fourth 97.8 3.8E-05 8.2E-10 49.6 4.8 25 25-52 1-25 (76)
205 cd05723 Ig4_Neogenin Fourth im 97.8 4.2E-05 9E-10 48.8 4.8 45 27-75 1-59 (71)
206 cd05732 Ig5_NCAM-1_like Fifth 97.8 5.6E-05 1.2E-09 50.7 5.7 33 16-51 7-39 (96)
207 cd05869 Ig5_NCAM-1 Fifth immun 97.8 6.1E-05 1.3E-09 51.0 5.9 38 11-51 3-40 (97)
208 cd04967 Ig1_Contactin First Ig 97.8 4E-05 8.6E-10 51.2 4.9 39 11-52 2-43 (91)
209 cd05763 Ig_1 Subgroup of the i 97.8 5.7E-05 1.2E-09 48.5 5.2 23 28-53 1-23 (75)
210 cd05740 Ig_CEACAM_D4 Fourth im 97.8 6.2E-05 1.3E-09 50.7 5.5 33 16-52 9-41 (91)
211 cd05754 Ig3_Perlecan_like Thir 97.8 8.2E-05 1.8E-09 48.9 6.0 39 13-53 4-42 (85)
212 cd05891 Ig_M-protein_C C-termi 97.8 4.5E-05 9.7E-10 51.3 4.6 34 16-52 7-40 (92)
213 cd04978 Ig4_L1-NrCAM_like Four 97.7 7.5E-05 1.6E-09 47.8 5.2 25 25-52 1-25 (76)
214 cd05863 Ig2_VEGFR-3 Second imm 97.7 4.5E-05 9.7E-10 48.6 3.9 45 28-76 1-54 (67)
215 cd05892 Ig_Myotilin_C C-termin 97.7 6.4E-05 1.4E-09 48.8 4.5 22 28-52 1-22 (75)
216 cd04969 Ig5_Contactin_like Fif 97.7 8.5E-05 1.9E-09 47.5 5.1 48 25-76 1-62 (73)
217 cd05893 Ig_Palladin_C C-termin 97.7 5.8E-05 1.3E-09 49.0 4.1 22 28-52 1-22 (75)
218 cd05726 Ig4_Robo Fhird immunog 97.7 0.00015 3.3E-09 48.2 6.1 26 25-53 1-26 (90)
219 cd05727 Ig2_Contactin-2-like S 97.7 0.00012 2.5E-09 50.1 5.4 58 17-76 10-83 (96)
220 cd05858 Ig3_FGFR-2 Third immun 97.7 0.00015 3.3E-09 48.3 5.8 23 25-50 1-23 (90)
221 cd05845 Ig2_L1-CAM_like Second 97.7 0.00015 3.2E-09 49.5 5.7 37 16-55 9-46 (95)
222 cd04979 Ig_Semaphorin_C Immuno 97.6 0.00025 5.4E-09 47.1 6.7 33 16-52 2-34 (89)
223 PF08205 C2-set_2: CD80-like C 97.6 0.00038 8.2E-09 46.1 7.5 67 80-152 14-84 (89)
224 smart00407 IGc1 Immunoglobulin 97.6 0.00029 6.3E-09 45.5 6.6 65 82-152 1-71 (75)
225 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00042 9E-09 46.7 7.4 66 80-152 14-83 (93)
226 cd05743 Ig_Perlecan_D2_like Im 97.6 0.00013 2.8E-09 47.4 4.6 25 25-52 1-25 (78)
227 cd05856 Ig2_FGFRL1-like Second 97.6 0.00012 2.6E-09 47.3 4.4 30 21-53 5-34 (82)
228 cd05744 Ig_Myotilin_C_like Imm 97.6 0.00015 3.2E-09 46.9 4.5 22 28-52 1-22 (75)
229 cd05876 Ig3_L1-CAM Third immun 97.5 0.00012 2.6E-09 46.7 3.8 45 28-76 1-59 (71)
230 cd05772 IgC_SIRP Signal-regula 97.5 0.0017 3.7E-08 45.5 9.5 71 75-152 16-92 (111)
231 cd05765 Ig_3 Subgroup of the i 97.4 0.00055 1.2E-08 44.2 6.2 24 25-51 1-24 (81)
232 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0013 2.7E-08 44.9 8.1 66 82-152 17-82 (95)
233 cd05738 Ig2_RPTP_IIa_LAR_like 97.4 0.0002 4.2E-09 46.0 3.8 22 28-52 1-22 (74)
234 cd07692 Ig_CD3_epsilon Immunog 97.4 0.00063 1.4E-08 43.0 5.8 54 77-152 4-57 (65)
235 KOG3515|consensus 97.4 0.00063 1.4E-08 61.4 7.7 127 19-152 16-186 (741)
236 cd05773 Ig8_hNephrin_like Eigh 97.4 0.00069 1.5E-08 47.0 6.3 25 24-51 22-46 (109)
237 cd05898 Ig5_KIRREL3 Fifth immu 97.4 0.0008 1.7E-08 46.1 6.4 35 16-52 7-41 (98)
238 cd05760 Ig2_PTK7 Second immuno 97.4 0.00041 8.9E-09 44.9 4.6 22 28-52 1-22 (77)
239 cd05719 Ig2_PVR_like Second im 97.3 0.0025 5.4E-08 43.3 8.6 67 81-152 16-82 (95)
240 cd05746 Ig4_Peroxidasin Fourth 97.3 0.00025 5.5E-09 44.8 3.4 44 28-75 1-58 (69)
241 cd05725 Ig3_Robo Third immunog 97.3 0.0005 1.1E-08 43.3 4.8 44 28-75 1-57 (69)
242 cd05748 Ig_Titin_like Immunogl 97.3 0.00053 1.1E-08 43.7 4.9 23 27-52 1-23 (74)
243 cd07701 Ig1_Necl-3 First (N-te 97.3 0.0014 3E-08 44.4 7.1 37 16-55 3-39 (95)
244 cd05753 Ig2_FcgammaR_like Seco 97.3 0.0008 1.7E-08 44.4 5.8 56 16-74 5-69 (83)
245 cd05853 Ig6_Contactin-4 Sixth 97.3 0.0011 2.4E-08 44.2 6.5 58 26-85 1-79 (85)
246 cd05766 IgC_MHC_II_beta Class 97.3 0.0023 5E-08 43.3 8.0 66 78-152 12-83 (94)
247 cd05770 IgC_beta2m Class I maj 97.3 0.0014 2.9E-08 44.5 6.9 68 78-152 13-83 (93)
248 PHA03376 BARF1; Provisional 97.2 0.0059 1.3E-07 46.7 10.1 128 19-152 20-207 (221)
249 cd07699 IgC_L Immunoglobulin C 97.2 0.0011 2.5E-08 45.3 5.8 69 79-152 16-89 (100)
250 cd05874 Ig6_NrCAM Sixth immuno 97.2 0.00078 1.7E-08 43.7 4.5 22 28-52 1-22 (77)
251 cd05872 Ig_Sema4B_like Immunog 97.2 0.0016 3.4E-08 43.5 5.9 53 16-73 2-67 (85)
252 cd05731 Ig3_L1-CAM_like Third 97.2 0.00059 1.3E-08 42.9 3.7 44 28-75 1-58 (71)
253 cd05733 Ig6_L1-CAM_like Sixth 97.1 0.00085 1.8E-08 43.4 4.4 22 28-52 1-22 (77)
254 cd05767 IgC_MHC_II_alpha Class 97.1 0.0021 4.6E-08 43.6 6.4 66 79-152 14-84 (94)
255 cd05875 Ig6_hNeurofascin_like 97.1 0.00094 2E-08 43.4 4.4 22 28-52 1-22 (77)
256 cd05736 Ig2_Follistatin_like S 97.1 0.00085 1.8E-08 43.0 4.0 22 28-52 1-22 (76)
257 PF07354 Sp38: Zona-pellucida- 97.1 0.00088 1.9E-08 53.3 4.6 50 96-152 11-60 (271)
258 cd05729 Ig2_FGFR_like Second i 97.0 0.0023 5.1E-08 41.2 5.9 30 20-52 4-33 (85)
259 PF13895 Ig_2: Immunoglobulin 97.0 0.0023 5E-08 40.5 5.7 36 17-56 6-41 (80)
260 smart00408 IGc2 Immunoglobulin 97.0 0.0017 3.7E-08 38.6 4.6 26 24-52 1-26 (63)
261 cd05854 Ig6_Contactin-2 Sixth 97.0 0.0018 4E-08 42.8 5.1 26 26-52 1-26 (85)
262 cd07702 Ig2_VEGFR-1 Second imm 97.0 0.0011 2.4E-08 42.8 3.8 42 29-74 2-57 (72)
263 cd07690 Ig1_CD4 First immunogl 97.0 0.0022 4.8E-08 43.5 5.5 31 20-53 2-32 (94)
264 cd05734 Ig7_DSCAM Seventh immu 97.0 0.0012 2.7E-08 42.6 4.1 22 28-52 1-22 (79)
265 cd07696 IgC_CH3 CH3 domain (th 97.0 0.0053 1.1E-07 41.8 7.3 72 77-152 11-86 (96)
266 cd04970 Ig6_Contactin_like Six 97.0 0.0023 5.1E-08 41.9 5.4 26 26-52 1-26 (85)
267 cd05881 Ig1_Necl-2 First (N-te 97.0 0.0029 6.3E-08 43.1 5.9 36 17-55 4-39 (95)
268 PHA02633 hypothetical protein; 96.9 0.0017 3.6E-08 40.6 4.0 36 126-162 16-54 (63)
269 cd04976 Ig2_VEGFR Second immun 96.9 0.0018 3.8E-08 41.3 4.2 44 28-75 1-57 (71)
270 cd05864 Ig2_VEGFR-2 Second imm 96.9 0.0014 3E-08 41.9 3.6 44 28-75 1-56 (70)
271 cd05847 IgC_CH2_IgE CH2 domain 96.9 0.005 1.1E-07 41.7 6.3 69 79-152 13-86 (94)
272 PF00047 ig: Immunoglobulin do 96.8 0.0024 5.3E-08 39.2 4.0 28 25-55 1-29 (64)
273 cd07704 Ig2_Nectin-3-4_like Se 96.8 0.0092 2E-07 40.8 7.0 72 76-152 12-84 (97)
274 PF07654 C1-set: Immunoglobuli 96.7 0.0066 1.4E-07 39.7 6.0 65 79-152 7-77 (83)
275 cd05757 Ig2_IL1R_like Second i 96.6 0.0029 6.3E-08 42.7 3.8 55 19-74 4-73 (92)
276 cd05717 Ig1_Necl-1-3_like Firs 96.6 0.012 2.6E-07 39.3 6.9 36 17-55 4-39 (95)
277 cd07697 IgC_TCR_gamma T cell r 96.6 0.01 2.3E-07 40.4 6.6 30 79-110 15-44 (96)
278 cd05871 Ig_Semaphorin_classIII 96.6 0.016 3.5E-07 38.8 7.4 30 18-51 4-33 (91)
279 cd05750 Ig_Pro_neuregulin Immu 96.6 0.0055 1.2E-07 38.8 4.7 21 29-52 2-23 (75)
280 PF08204 V-set_CD47: CD47 immu 96.5 0.0087 1.9E-07 43.1 6.0 69 79-152 26-108 (130)
281 cd05768 IgC_CH4 CH4 domain (fo 96.5 0.0091 2E-07 41.0 5.8 69 78-152 14-91 (102)
282 cd05855 Ig_TrkB_d5 Fifth domai 96.5 0.0043 9.4E-08 40.7 3.9 20 30-52 3-22 (79)
283 cd05742 Ig1_VEGFR_like First i 96.5 0.0065 1.4E-07 39.7 4.6 27 25-52 1-27 (84)
284 PHA02982 hypothetical protein; 96.4 0.013 2.7E-07 45.5 6.2 75 75-152 34-123 (251)
285 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.027 5.8E-07 39.7 7.4 75 75-152 8-97 (115)
286 cd05774 Ig_CEACAM_D1 First imm 96.3 0.016 3.4E-07 40.1 6.1 35 14-51 2-36 (105)
287 cd05895 Ig_Pro_neuregulin-1 Im 96.3 0.0084 1.8E-07 38.3 4.4 25 28-55 1-25 (76)
288 cd04971 Ig_TrKABC_d5 Fifth dom 96.3 0.0066 1.4E-07 39.8 3.8 23 30-56 3-25 (81)
289 cd04986 IgC_CH2 CH2 domain (se 96.2 0.022 4.8E-07 39.1 6.1 72 78-153 17-90 (99)
290 smart00409 IG Immunoglobulin. 96.2 0.054 1.2E-06 33.7 7.7 35 18-55 2-36 (86)
291 smart00410 IG_like Immunoglobu 96.2 0.054 1.2E-06 33.7 7.7 35 18-55 2-36 (86)
292 cd07691 Ig_CD3_gamma_delta Imm 96.1 0.021 4.6E-07 36.5 5.4 49 80-150 6-54 (69)
293 cd05896 Ig1_IL1RAPL-1_like Fir 96.0 0.026 5.6E-07 39.1 5.9 36 16-51 6-49 (104)
294 cd05861 Ig1_PDGFR-alphabeta Fr 96.0 0.012 2.6E-07 38.7 4.0 24 25-51 1-24 (84)
295 cd05769 IgC_TCR_beta T cell re 96.0 0.023 4.9E-07 40.0 5.5 68 79-152 17-92 (115)
296 cd07698 IgC_MHC_I_alpha3 Class 95.9 0.03 6.5E-07 37.5 5.9 75 25-102 14-92 (93)
297 cd04985 IgC_CH1 CH1 domain (fi 95.9 0.042 9.1E-07 37.2 6.5 68 79-152 15-87 (95)
298 cd05862 Ig1_VEGFR First immuno 95.9 0.047 1E-06 36.0 6.6 27 25-52 1-27 (86)
299 cd05766 IgC_MHC_II_beta Class 95.8 0.045 9.7E-07 36.9 6.3 66 23-91 12-81 (94)
300 cd05759 Ig2_KIRREL3-like Secon 95.8 0.04 8.8E-07 35.6 5.9 25 28-55 2-26 (82)
301 cd07696 IgC_CH3 CH3 domain (th 95.8 0.012 2.6E-07 40.0 3.4 68 21-91 10-84 (96)
302 cd05767 IgC_MHC_II_alpha Class 95.6 0.054 1.2E-06 36.7 6.1 75 24-102 14-93 (94)
303 KOG4597|consensus 95.6 0.015 3.3E-07 49.9 4.0 72 75-152 206-280 (560)
304 KOG3515|consensus 95.4 0.014 2.9E-07 53.0 3.1 65 76-152 18-82 (741)
305 cd05751 Ig1_LILRB1_like First 95.3 0.033 7.2E-07 37.1 4.3 35 13-52 5-39 (91)
306 cd05770 IgC_beta2m Class I maj 95.1 0.079 1.7E-06 35.8 5.7 65 23-91 13-81 (93)
307 cd07689 Ig2_VCAM-1 Second immu 95.1 0.096 2.1E-06 35.9 5.9 72 76-152 11-86 (99)
308 cd05768 IgC_CH4 CH4 domain (fo 94.5 0.037 8.1E-07 37.9 2.8 74 22-99 13-96 (102)
309 cd05885 Ig2_Necl-4 Second immu 94.5 0.19 4.2E-06 33.0 6.1 60 28-90 2-63 (80)
310 PF13927 Ig_3: Immunoglobulin 94.0 0.041 8.8E-07 34.0 2.0 19 28-48 18-36 (75)
311 PHA03042 CD47-like protein; Pr 93.8 0.24 5.1E-06 39.9 6.4 62 79-152 30-93 (286)
312 cd05772 IgC_SIRP Signal-regula 93.8 0.29 6.2E-06 34.1 6.2 70 19-91 15-90 (111)
313 cd05771 IgC_Tapasin_R Tapasin- 93.6 0.22 4.8E-06 35.6 5.6 39 13-52 41-79 (139)
314 PF07654 C1-set: Immunoglobuli 93.5 0.071 1.5E-06 34.7 2.5 64 25-91 8-75 (83)
315 cd05879 Ig_P0 Immunoglobulin ( 93.4 0.6 1.3E-05 32.7 7.4 33 17-49 5-38 (116)
316 cd05899 IgV_TCR_beta Immunoglo 93.2 0.14 3E-06 35.0 3.8 33 15-51 3-35 (110)
317 cd04980 IgV_L_kappa Immunoglob 93.2 0.14 3E-06 34.8 3.8 37 13-51 3-39 (106)
318 cd04983 IgV_TCR_alpha_like Imm 92.8 0.18 4E-06 34.1 3.9 34 15-51 3-36 (109)
319 smart00407 IGc1 Immunoglobulin 92.7 0.27 5.9E-06 31.4 4.3 61 27-90 1-68 (75)
320 cd07705 Ig2_Necl-1 Second immu 92.5 1.8 4E-05 28.1 8.3 59 28-90 2-66 (83)
321 cd00098 IgC Immunoglobulin Con 92.4 0.14 3.1E-06 33.7 2.8 65 23-90 11-82 (95)
322 cd05755 Ig2_ICAM-1_like Second 92.4 0.22 4.8E-06 34.2 3.8 38 13-52 4-43 (100)
323 cd05860 Ig4_SCFR Fourth immuno 91.9 0.61 1.3E-05 32.1 5.6 32 19-52 12-43 (101)
324 cd04982 IgV_TCR_gamma Immunogl 91.7 0.23 5E-06 34.2 3.4 34 15-51 3-38 (116)
325 cd07692 Ig_CD3_epsilon Immunog 91.4 0.51 1.1E-05 29.8 4.4 46 22-74 4-55 (65)
326 cd07694 Ig2_CD4 Second immunog 91.4 0.64 1.4E-05 31.2 5.1 53 19-72 8-70 (88)
327 cd05884 Ig2_Necl-3 Second immu 90.9 1.5 3.3E-05 28.6 6.6 59 28-90 2-66 (83)
328 PF08205 C2-set_2: CD80-like C 90.7 0.55 1.2E-05 30.6 4.3 28 25-54 14-41 (89)
329 PF06328 Lep_receptor_Ig: Ig-l 90.6 1.6 3.4E-05 29.2 6.5 68 72-148 10-81 (89)
330 cd05897 Ig2_IL1R2_like Second 89.9 0.44 9.6E-06 32.3 3.4 33 20-52 5-39 (95)
331 cd07706 IgV_TCR_delta Immunogl 89.7 0.6 1.3E-05 32.2 4.0 35 14-50 3-37 (116)
332 cd00099 IgV Immunoglobulin var 89.1 0.49 1.1E-05 31.5 3.1 29 21-51 2-30 (105)
333 PHA02865 MHC-like TNF binding 88.9 1.7 3.6E-05 36.3 6.6 23 82-105 216-238 (338)
334 PHA02914 Immunoglobulin-like d 88.7 2.2 4.7E-05 36.4 7.1 74 76-152 275-369 (500)
335 cd07700 IgV_CD8_beta Immunoglo 87.8 0.82 1.8E-05 31.1 3.6 30 21-52 2-31 (107)
336 PF11465 Receptor_2B4: Natural 87.8 0.74 1.6E-05 32.0 3.2 33 119-152 61-94 (108)
337 PF07686 V-set: Immunoglobulin 86.8 1.5 3.3E-05 29.0 4.5 36 14-51 5-40 (114)
338 cd05715 Ig_P0-like Immunoglobu 86.8 1.3 2.8E-05 30.6 4.1 35 16-50 4-39 (116)
339 cd05761 Ig2_Necl-1-4_like Seco 86.7 0.99 2.1E-05 29.2 3.3 58 28-90 2-65 (82)
340 cd07697 IgC_TCR_gamma T cell r 86.0 0.74 1.6E-05 31.2 2.5 28 23-51 14-41 (96)
341 cd07699 IgC_L Immunoglobulin C 85.9 0.72 1.6E-05 31.3 2.4 66 23-91 15-87 (100)
342 cd05711 Ig_FcalphaRI Immunoglo 85.9 1 2.2E-05 30.0 3.2 32 18-53 8-39 (94)
343 cd05883 Ig2_Necl-2 Second immu 85.4 1.3 2.8E-05 29.3 3.4 23 28-52 2-24 (82)
344 cd05877 Ig_LP_like Immunoglobu 85.1 1.1 2.4E-05 30.1 3.1 28 24-51 1-31 (106)
345 cd05716 Ig_pIgR Immunoglobulin 85.1 2 4.3E-05 28.4 4.3 30 20-51 2-31 (98)
346 cd05847 IgC_CH2_IgE CH2 domain 84.8 0.63 1.4E-05 31.3 1.7 28 24-52 13-40 (94)
347 cd05880 Ig_EVA1 Immunoglobulin 84.7 1.8 3.9E-05 30.0 4.1 33 17-49 5-38 (115)
348 PHA02865 MHC-like TNF binding 84.6 2 4.4E-05 35.8 4.9 23 27-50 216-238 (338)
349 cd05713 Ig_MOG_like Immunoglob 84.6 2 4.3E-05 28.5 4.1 28 25-52 1-28 (100)
350 cd04985 IgC_CH1 CH1 domain (fi 84.6 1.1 2.3E-05 30.3 2.8 64 24-91 15-85 (95)
351 cd04984 IgV_L_lambda Immunoglo 84.2 1 2.2E-05 30.0 2.6 30 21-51 2-31 (98)
352 cd04981 IgV_H Immunoglobulin ( 83.8 1.4 3.1E-05 30.6 3.2 36 15-51 2-37 (117)
353 cd05720 Ig_CD8_alpha Immunoglo 82.1 1.7 3.6E-05 29.5 3.0 28 21-51 2-29 (104)
354 cd05714 Ig_CSPGs_LP Immunoglob 82.1 1.7 3.8E-05 29.2 3.1 27 24-50 1-30 (106)
355 cd05712 Ig_Siglec_N Immunoglob 81.2 3.2 7E-05 28.7 4.3 36 16-51 5-43 (119)
356 PHA02987 Ig domain OX-2-like p 80.7 4.6 0.0001 30.9 5.2 36 15-52 20-55 (189)
357 cd05769 IgC_TCR_beta T cell re 80.2 1.6 3.5E-05 30.6 2.4 77 24-105 17-102 (115)
358 cd05718 Ig1_PVR_like First imm 79.9 2.3 5E-05 27.9 3.1 27 26-52 1-27 (98)
359 cd04986 IgC_CH2 CH2 domain (se 79.4 1.4 3.1E-05 30.1 1.9 31 22-53 16-47 (99)
360 PHA03052 Hypothetical protein; 76.6 6.3 0.00014 25.1 4.0 35 75-110 7-41 (69)
361 cd05741 Ig_CEACAM_D1_like Firs 76.6 3.2 6.8E-05 26.8 2.9 25 25-52 1-25 (92)
362 PHA03270 envelope glycoprotein 75.3 30 0.00066 29.9 8.9 72 76-152 230-308 (466)
363 cd05900 Ig_Aggrecan Immunoglob 75.3 3.7 8.1E-05 28.5 3.1 27 24-50 1-36 (112)
364 cd07689 Ig2_VCAM-1 Second immu 75.0 4.6 9.9E-05 27.7 3.4 32 21-52 11-42 (99)
365 cd05775 Ig_SLAM-CD84_like_N N- 71.6 3.1 6.6E-05 27.8 1.9 27 23-51 2-28 (97)
366 cd05721 IgV_CTLA-4 Immunoglobu 69.7 9.4 0.0002 26.9 4.0 36 15-50 3-38 (115)
367 cd07704 Ig2_Nectin-3-4_like Se 68.3 10 0.00022 25.8 3.9 30 19-50 10-40 (97)
368 cd05846 Ig1_MRC-OX-2_like Firs 66.5 9.9 0.00021 25.1 3.6 26 25-52 1-26 (97)
369 cd07703 Ig2_Nectin-2_like Seco 64.8 16 0.00034 24.6 4.3 24 25-50 15-38 (95)
370 KOG3611|consensus 62.8 18 0.00038 33.5 5.4 63 82-152 571-635 (737)
371 cd05878 Ig_Aggrecan_like Immun 61.0 12 0.00025 25.6 3.2 28 24-51 1-35 (110)
372 PHA03052 Hypothetical protein; 60.9 17 0.00038 23.1 3.6 36 17-52 4-39 (69)
373 PHA03189 UL14 tegument protein 58.4 97 0.0021 25.7 8.3 75 75-152 62-156 (348)
374 PHA03282 envelope glycoprotein 55.6 10 0.00022 33.1 2.5 21 129-150 334-354 (540)
375 PHA03282 envelope glycoprotein 54.9 17 0.00036 31.8 3.6 28 120-149 117-144 (540)
376 PHA03240 envelope glycoprotein 52.5 20 0.00043 28.1 3.4 101 7-145 20-121 (258)
377 KOG1026|consensus 52.0 36 0.00078 31.7 5.5 125 19-152 201-351 (774)
378 cd05719 Ig2_PVR_like Second im 52.0 23 0.0005 23.7 3.4 23 26-50 16-38 (95)
379 PHA02914 Immunoglobulin-like d 50.4 27 0.00058 30.1 4.1 23 129-152 82-104 (500)
380 PHA03286 envelope glycoprotein 49.8 20 0.00043 31.2 3.3 21 129-150 308-328 (492)
381 PHA03271 envelope glycoprotein 48.2 1.1E+02 0.0023 26.7 7.3 72 77-152 257-335 (490)
382 PHA03042 CD47-like protein; Pr 47.4 47 0.001 27.0 4.9 73 23-106 29-112 (286)
383 PHA03283 envelope glycoprotein 46.4 21 0.00045 31.6 3.0 21 129-150 316-336 (542)
384 PF02480 Herpes_gE: Alphaherpe 46.4 11 0.00025 32.5 1.5 22 129-151 270-291 (439)
385 cd05888 Ig1_Nectin-4_like Frst 46.1 29 0.00063 23.1 3.2 25 27-51 2-26 (100)
386 PF05790 C2-set: Immunoglobuli 45.7 82 0.0018 20.4 5.3 23 128-151 43-66 (80)
387 PHA02982 hypothetical protein; 45.3 19 0.00042 28.2 2.4 39 16-56 30-68 (251)
388 PF02440 Adeno_E3_CR1: Adenovi 44.6 77 0.0017 19.8 4.9 21 77-104 2-22 (63)
389 PHA03112 IL-18 binding protein 42.1 99 0.0021 22.6 5.5 72 78-151 36-118 (141)
390 KOG1480|consensus 40.8 4.9 0.00011 37.1 -1.7 65 7-74 126-204 (909)
391 PF07354 Sp38: Zona-pellucida- 40.1 27 0.00058 28.2 2.5 34 43-76 13-60 (271)
392 PF00900 Ribosomal_S4e: Riboso 35.4 1.2E+02 0.0027 19.5 5.1 43 121-164 5-52 (77)
393 PHA03269 envelope glycoprotein 33.6 1.8E+02 0.0039 25.9 6.6 71 77-152 339-417 (566)
394 PHA03273 envelope glycoprotein 31.8 2.1E+02 0.0045 25.2 6.7 72 77-152 247-325 (486)
395 PHA03273 envelope glycoprotein 30.0 3.9E+02 0.0084 23.6 8.1 26 65-90 88-113 (486)
396 PHA03269 envelope glycoprotein 25.8 1.9E+02 0.0041 25.7 5.5 34 20-53 337-370 (566)
397 PHA03270 envelope glycoprotein 25.7 1.8E+02 0.0039 25.4 5.3 37 21-57 230-266 (466)
398 COG1471 RPS4A Ribosomal protei 25.6 2E+02 0.0042 22.9 5.1 46 118-164 94-144 (241)
399 PF01688 Herpes_gI: Alphaherpe 25.4 42 0.00092 25.0 1.4 20 129-149 125-144 (161)
400 KOG0613|consensus 21.8 59 0.0013 31.8 1.8 26 80-110 205-230 (1205)
No 1
>KOG3513|consensus
Probab=99.85 E-value=1e-20 Score=170.64 Aligned_cols=136 Identities=18% Similarity=0.332 Sum_probs=109.9
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ce-----E--------EEeeeEEEecC
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DF-----V--------VSQSYTVNIMD 74 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~-----v--------~~g~y~c~~~~ 74 (167)
+++...++|+.+..|+.+.|+|.|.+.|.+ .++|+|++ .++.+... .. + .+|.|+|.++|
T Consensus 332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p---~v~WlkNg-~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~N 407 (1051)
T KOG3513|consen 332 PYWLQKPQDTEADTGSNVTLECKASGKPNP---TVKWLKNG-EPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAEN 407 (1051)
T ss_pred chhhcccceeEecCCCCeEEEEEecCCCCC---ceEEeeCC-eecCccCCCcceEEeCCEEEEEecccccCeEEEeeeec
Confidence 347889999999999999999999988864 89999994 34443222 11 1 27999998855
Q ss_pred ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724 75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126 (167)
Q Consensus 75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~ 126 (167)
..+..|.++.+.|.+.+ .|.|.++|+|++. .+. .++||.+++
T Consensus 408 k~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~a---sP~p~~~W~k~~~-~~~------~~~r~~i~e 477 (1051)
T KOG3513|consen 408 KYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFA---SPKPKVSWLKGGE-KLL------QSGRIRILE 477 (1051)
T ss_pred ccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCC---CCcceEEEEcCCc-ccc------cCceEEECC
Confidence 24578999999999985 4999999999984 332 478999999
Q ss_pred CCeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724 127 SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT 161 (167)
Q Consensus 127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~ 161 (167)
||+|.|+|++.+|+ |.|+|.|+|.+ ..++.|.+.
T Consensus 478 dGtL~I~n~t~~Da-G~YtC~A~N~~G~a~~~~~L~Vk 514 (1051)
T KOG3513|consen 478 DGTLEISNVTRSDA-GKYTCVAENKLGKAESTGNLIVK 514 (1051)
T ss_pred CCcEEecccCcccC-cEEEEEEEcccCccceEEEEEEe
Confidence 99999999999999 99999999988 445566653
No 2
>KOG3513|consensus
Probab=99.80 E-value=4.1e-19 Score=160.41 Aligned_cols=132 Identities=19% Similarity=0.328 Sum_probs=101.7
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC----ceE---------EEeeeEEEecC---------
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----DFV---------VSQSYTVNIMD--------- 74 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----~~v---------~~g~y~c~~~~--------- 74 (167)
|+++...+|+++.|+|.|.|.|- |.|.|.|.||..+..... ..+ ..|.|+|.++|
T Consensus 248 p~~~~a~~G~~v~LECfA~G~P~---P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~ 324 (1051)
T KOG3513|consen 248 PETETALKGQSVKLECFALGNPT---PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG 324 (1051)
T ss_pred CCcccccCCCeEEEEEEecCCCC---CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence 34788999999999999999885 589999999965542111 111 27999998854
Q ss_pred ----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcC
Q psy12724 75 ----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPE 138 (167)
Q Consensus 75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~ 138 (167)
..+..|+++.|.|.+. |.|.|.++|+||+ .++.+. +...|+.+ .+|.|.|++++.+
T Consensus 325 ~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~---g~P~p~v~WlkNg-~pl~~~---~r~~~~~i-~~g~L~is~v~~~ 396 (1051)
T KOG3513|consen 325 HVTVYAPPYWLQKPQDTEADTGSNVTLECKAS---GKPNPTVKWLKNG-EPLEPA---ERDPRYKI-DDGTLIISNVQES 396 (1051)
T ss_pred EEEEecCchhhcccceeEecCCCCeEEEEEec---CCCCCceEEeeCC-eecCcc---CCCcceEE-eCCEEEEEecccc
Confidence 4456899999999998 5699999999998 677532 12334655 5799999999999
Q ss_pred CCCcceEEEeeecC---cceEEEee
Q psy12724 139 DGYKSYQCRTKHRL---TGETRLSA 160 (167)
Q Consensus 139 D~~G~Y~C~a~n~~---~~~~~l~~ 160 (167)
|+ |+|+|.|+|+. .+.+.|.+
T Consensus 397 ds-g~YQC~A~Nk~G~i~anA~L~V 420 (1051)
T KOG3513|consen 397 DS-GVYQCIAENKYGTIYANAELKV 420 (1051)
T ss_pred cC-eEEEeeeecccceEeeeeEEEE
Confidence 99 99999999987 33444444
No 3
>KOG4221|consensus
Probab=99.75 E-value=2.8e-17 Score=149.00 Aligned_cols=136 Identities=18% Similarity=0.389 Sum_probs=105.0
Q ss_pred ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---------------EEeeeEEEec---
Q psy12724 12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---------------VSQSYTVNIM--- 73 (167)
Q Consensus 12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---------------~~g~y~c~~~--- 73 (167)
.|..+++++++..|+++.|+|.+-+.+ +|.+.|+|++. ++. ...+.+ ..|.|+|.+.
T Consensus 142 ~f~~~~~~~t~~~g~ta~f~c~vn~e~---~p~i~w~kn~~-pl~-~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~ 216 (1381)
T KOG4221|consen 142 DFALQPESTTLLYGQTALFSCEVNAEP---VPTIMWLKNDQ-PLP-LDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGA 216 (1381)
T ss_pred ccccCccceeEecCCcEEEEEEEcCcc---CceeEEecccc-ccc-CCCcEEEcCCCcEEecccccCCCceEEEEEecCC
Confidence 499999999999999999999997744 56899999976 222 112211 2799999863
Q ss_pred -----------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724 74 -----------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV 124 (167)
Q Consensus 74 -----------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~ 124 (167)
+..+.+|++++|+|.+.+. |+|.+.|+||+ +.|.- .+.|+..
T Consensus 217 ~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~---p~p~v~Wlrng-~~i~~-----ds~rivl 287 (1381)
T KOG4221|consen 217 SQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGV---PKPSVKWLRNG-EKISV-----DSYRIVL 287 (1381)
T ss_pred cCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCC---CCCceEEeeCC-eeeee-----cceEEEE
Confidence 2356789999999999854 99999999987 56642 3457777
Q ss_pred ccCCeEEEeecCcCCCCcceEEEeeecC-----cceEEEeeeC
Q psy12724 125 LPSGELHIRDVGPEDGYKSYQCRTKHRL-----TGETRLSATK 162 (167)
Q Consensus 125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~~ 162 (167)
...++|.|++++..|+ |.|+|.|.|.. +++.++.+-|
T Consensus 288 ~g~~slliS~a~~~dS-g~YtC~Atn~~D~idasaev~V~a~P 329 (1381)
T KOG4221|consen 288 VGGSSLLISNATDDDS-GKYTCRATNTNDSIDASAEVTVLAPP 329 (1381)
T ss_pred ecccceEEeccccccC-ceEEEEecCCCcccccceEEEEEcCC
Confidence 7788999999999999 99999999954 4444444433
No 4
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.74 E-value=7.7e-17 Score=126.45 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=91.4
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCC--------cceeeEEeeCCCceeeec---------------CCc--eE-------
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSD--------HLDVVSWADTDGGQYQID---------------NQD--FV------- 63 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~--------~~~~i~W~k~~~~~~~~~---------------~~~--~v------- 63 (167)
+.....|.+|+++.|.|.+.+.+.+ .-..+.|.|++...+..+ +++ .+
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 3467889999999999998764421 123699999975322211 011 11
Q ss_pred -EEeeeEEEecC-------------------eEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCCCeeeEEeeeecCCce
Q psy12724 64 -VSQSYTVNIMD-------------------EHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQGEELFVDMTESTDGK 121 (167)
Q Consensus 64 -~~g~y~c~~~~-------------------~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~~~~l~~~~~~~~~~r 121 (167)
.+|.|+|.+.+ ..+.+|+++.|.|.+.+.. +.|.|.++|+||+ ..+. .++|
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng-~~l~------~~~r 180 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG-NIVL------YTDR 180 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECC-EECC------CCCC
Confidence 27999999854 2345799999999985321 2367899999997 5653 2456
Q ss_pred EEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 122 YLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 122 ~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.+..+ +.|.|.+++.+|+ |.|+|.|+...
T Consensus 181 ~~~~~~~~~L~I~~V~~~Ds-G~YtC~a~~~~ 211 (227)
T PHA02826 181 IQLRNNNSTLVIKSATHDDS-GIYTCNLRFNK 211 (227)
T ss_pred EEEeCCCCEEEECcCCHHhC-EEEEEEEEEeE
Confidence 665544 5899999999999 99999999864
No 5
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=1.2e-17 Score=108.98 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=54.9
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|+|.+.+ .|.|.++|+|++ ..+. .+.|+.+.++|.|.|.+++.+|+ |.|+|.|+|..
T Consensus 1 G~~~~l~C~~~g---~P~p~v~W~k~~-~~l~------~~~r~~~~~~g~L~I~~v~~~D~-G~Y~C~A~N~~ 62 (73)
T cd05852 1 GGRVIIECKPKA---APKPKFSWSKGT-ELLV------NNSRISIWDDGSLEILNITKLDE-GSYTCFAENNR 62 (73)
T ss_pred CCeEEEEEecce---eCCCEEEEEeCC-Eecc------cCCCEEEcCCCEEEECcCChhHC-EEEEEEEECCC
Confidence 789999999984 599999999987 4543 35789888999999999999998 99999999988
No 6
>KOG4194|consensus
Probab=99.73 E-value=1.1e-17 Score=143.80 Aligned_cols=141 Identities=19% Similarity=0.323 Sum_probs=106.4
Q ss_pred eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--------------cCC---c-------eE--
Q psy12724 10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--------------DNQ---D-------FV-- 63 (167)
Q Consensus 10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--------------~~~---~-------~v-- 63 (167)
.++...+|+++.+..|..+.|.|.|.+....++ .+.|.+|.. .... ++. + ++
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssaspl-si~WR~dne-vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPL-SIEWRKDNE-VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCc-eeEeeeccc-cCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 345678899999999999999999988655543 699999854 1111 110 0 01
Q ss_pred ----EEeeeEEEec--------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe
Q psy12724 64 ----VSQSYTVNIM--------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD 113 (167)
Q Consensus 64 ----~~g~y~c~~~--------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~ 113 (167)
..|.|+|.+. |.+...|++|.|.|.|.| +|.|.|.|.|+|+..+ |.
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG---~P~PeIawqkdggtdF-PA 656 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATG---HPRPEIAWQKDGGTDF-PA 656 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccC---CCCcceeehhcCCCCC-ch
Confidence 2799999874 345678999999999994 5999999999986444 43
Q ss_pred eeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724 114 MTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA 160 (167)
Q Consensus 114 ~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~ 160 (167)
. ...|.++.+ +....|.||..+|+ |.|+|.|.|.+ ++.+.|++
T Consensus 657 A---~eRRl~Vmpedd~f~Itnvk~eD~-GiYtC~A~n~AG~isanAtL~V 703 (873)
T KOG4194|consen 657 A---RERRLHVMPEDDVFFITNVKIEDQ-GIYTCTAQNVAGQISANATLTV 703 (873)
T ss_pred h---hhheeeecCCCCEEEEeccccccc-ceeEEeeeccccceeeceEEEE
Confidence 1 456677776 55799999999998 99999999987 55666666
No 7
>KOG4221|consensus
Probab=99.73 E-value=3.8e-17 Score=148.13 Aligned_cols=143 Identities=20% Similarity=0.384 Sum_probs=113.5
Q ss_pred EEEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce---------eeecCCce-----------EEE
Q psy12724 6 VAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ---------YQIDNQDF-----------VVS 65 (167)
Q Consensus 6 ~av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~---------~~~~~~~~-----------v~~ 65 (167)
.+...-+|..+|.|. ++|.++.|+|.+-..++ ..+.|.|.||+..+ +.+|++.+ +..
T Consensus 37 ~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~-~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~e 113 (1381)
T KOG4221|consen 37 QANTPLQFLLEPSDA--MEGSSVLLECSAYAAGG-TSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDE 113 (1381)
T ss_pred hccCcceEEeccccc--ccccceEEeccccccCC-CCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccC
Confidence 455566788899966 99999999999877665 24689999885432 12344432 237
Q ss_pred eeeEEEe---------------------------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecC
Q psy12724 66 QSYTVNI---------------------------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST 118 (167)
Q Consensus 66 g~y~c~~---------------------------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~ 118 (167)
|.|+|.+ .++++..|++|.|+|.+. +.|.|.+.|+||+ .++. .
T Consensus 114 g~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn---~e~~p~i~w~kn~-~pl~------~ 183 (1381)
T KOG4221|consen 114 GVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVN---AEPVPTIMWLKND-QPLP------L 183 (1381)
T ss_pred ceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEc---CccCceeEEeccc-cccc------C
Confidence 9999975 246788999999999998 4699999999998 4553 4
Q ss_pred CceEEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEeeeC
Q psy12724 119 DGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSATK 162 (167)
Q Consensus 119 ~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~~ 162 (167)
++|+.++++|.|.|.+++++|. |.|+|.++|.. +.+++|++..
T Consensus 184 ~~r~i~lpsG~L~I~~~qp~d~-g~yrc~vt~g~~~r~S~~a~ltv~s 230 (1381)
T KOG4221|consen 184 DSRVIVLPSGALEISGLQPSDT-GEYRCVVTGGASQRTSNEAELTVLS 230 (1381)
T ss_pred CCcEEEcCCCcEEecccccCCC-ceEEEEEecCCcCCccceeEEEecC
Confidence 6699999999999999999999 99999999977 6678888763
No 8
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.70 E-value=5.9e-17 Score=105.47 Aligned_cols=63 Identities=27% Similarity=0.470 Sum_probs=54.3
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+|+++.|.|.+. |+|.|.++|+|++ ..+. .+.++.+..+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 eG~~v~l~C~~~---g~P~p~i~W~k~g-~~~~------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~ 63 (74)
T cd05745 1 EGQTVDFLCEAQ---GYPQPVIAWTKGG-SQLS------VDRRHLVLSSGTLRISRVALHDQ-GQYECQAVNIV 63 (74)
T ss_pred CCCeEEEEeECC---EecCCEEEEEECC-EECC------CCCCeEEccCCeEEEeeCCHHhC-EEEEEEEEeCC
Confidence 589999999998 5599999999997 4542 24567677889999999999998 99999999987
No 9
>KOG4222|consensus
Probab=99.68 E-value=9.6e-17 Score=144.90 Aligned_cols=137 Identities=22% Similarity=0.351 Sum_probs=105.2
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee----------ecCCceE-----------EEeeeEEE
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ----------IDNQDFV-----------VSQSYTVN 71 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~----------~~~~~~v-----------~~g~y~c~ 71 (167)
...+|.|+.|..|..|.|.|.|++.|.+ +|.|+|++...+. +++...+ ..|.|.|.
T Consensus 34 iiehp~d~vvs~~~patlnc~asG~ppP---ti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cv 110 (1281)
T KOG4222|consen 34 IIEHPHDLVVSKGEPATLNCKASGDPPP---TIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCV 110 (1281)
T ss_pred eEecchhhhccCCCCceeecCCCCCCCC---ceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEee
Confidence 5578999999999999999999999764 8999999654332 1111111 25899998
Q ss_pred ecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724 72 IMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV 124 (167)
Q Consensus 72 ~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~ 124 (167)
+.+ ..+..|+.++|+|.-+. +.|.|.++|.||+ .++.. ....++.+
T Consensus 111 asn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~--ghpeptvSw~Kdg-~pl~~----~~~~~~~l 183 (1281)
T KOG4222|consen 111 ASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR--GHPEPTVSWVKDG-KPLDH----YDVPIIAL 183 (1281)
T ss_pred ecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCC--CCCCCcceeecCC-Ccccc----ccceeEEE
Confidence 643 34578999999999764 6799999999998 45532 13456777
Q ss_pred ccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEee
Q psy12724 125 LPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSA 160 (167)
Q Consensus 125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~ 160 (167)
.++|.|.|.|++.+|+ |+|.|+|.|.+ +.-++|++
T Consensus 184 isgG~LlIsnvrksD~-GtY~CVatNmvG~ReS~~A~lsv 222 (1281)
T KOG4222|consen 184 ISGGNLLISNVRKSDE-GTYACVATNMVGERESIPARLSV 222 (1281)
T ss_pred ecCCcEEEeccccCCC-ceeeeeecccccccccccceeee
Confidence 7899999999999999 99999999987 44445554
No 10
>KOG4194|consensus
Probab=99.68 E-value=2.4e-16 Score=135.66 Aligned_cols=130 Identities=17% Similarity=0.335 Sum_probs=102.8
Q ss_pred eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eE---------------EEeeeEEE
Q psy12724 9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FV---------------VSQSYTVN 71 (167)
Q Consensus 9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v---------------~~g~y~c~ 71 (167)
+.+.|...|+|.+...|+.|.|+|.|.|.|.| .|+|.|++|..++....| +| .+|.|+|.
T Consensus 611 ~~PsFtktP~dltl~tg~mArl~CaAtG~P~P---eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~ 687 (873)
T KOG4194|consen 611 QAPSFTKTPEDLTLRTGQMARLECAATGHPRP---EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCT 687 (873)
T ss_pred ccCccccCcccceeecccceeeeeeccCCCCc---ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEe
Confidence 45679999999999999999999999999875 799999998766542222 22 27999998
Q ss_pred ec-------------------------CeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724 72 IM-------------------------DEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVL 125 (167)
Q Consensus 72 ~~-------------------------~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~ 125 (167)
++ ++.|..|+++.|+|.+.+. |. |.+.|+|++ .++.- ..|.+..
T Consensus 688 A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~---~a~pr~~W~k~d-~pil~------t~rh~f~ 757 (873)
T KOG4194|consen 688 AQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA---PADPRLEWFKED-KPILI------TERHTFP 757 (873)
T ss_pred eeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC---CCCccccccCCC-CceEE------eecccCC
Confidence 73 4678899999999999853 54 889999998 46532 2333333
Q ss_pred c-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 126 P-SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 126 ~-~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+ |.-|.+.+...+|+ |.|+|...|..
T Consensus 758 d~dQllvv~~~~~~da-G~yTcem~~~~ 784 (873)
T KOG4194|consen 758 DGDQLLVVKENLVEDA-GIYTCEMSNTL 784 (873)
T ss_pred CCCeEEEEEehhhhhc-ceEEEEEEeec
Confidence 3 33689999999999 99999999987
No 11
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=6.3e-16 Score=104.08 Aligned_cols=74 Identities=24% Similarity=0.428 Sum_probs=60.3
Q ss_pred eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEE
Q psy12724 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C 146 (167)
.+.....|..+.+|+++.|.|.+. |+|.|.++|+|++ ..+. ...++. ..++.|.|.+++.+|+ |.|+|
T Consensus 3 ~i~~~~~~~~~~~G~~v~l~C~~~---G~P~P~v~W~k~~-~~~~------~~~~~~-~~~~~L~I~~v~~~D~-G~Y~C 70 (88)
T cd05851 3 DINVKFKDTYALKGQNVTLECFAL---GNPVPVIRWRKIL-EPMP------ATAEIS-MSGAVLKIFNIQPEDE-GTYEC 70 (88)
T ss_pred ceEEccccEEEeCCCcEEEEEEec---ccCCCEEEEEECC-cCCC------CCCEEe-cCCCEEEECcCChhhC-EEEEE
Confidence 355566788999999999999998 5699999999997 4442 233443 3467899999999998 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
.|.|..
T Consensus 71 ~A~N~~ 76 (88)
T cd05851 71 EAENIK 76 (88)
T ss_pred EEEcCC
Confidence 999998
No 12
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.64 E-value=2e-15 Score=100.33 Aligned_cols=72 Identities=25% Similarity=0.448 Sum_probs=59.5
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
+.+..+.+|+++.|.|.+.. +.|.|.+.|+|++ ..+.. ...++.+..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~--g~p~p~i~W~k~g-~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~ 73 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPR--GHPEPTVSWRKDG-QPLNL-----DNERVRIVDDGNLLIAEARKSDE-GTYKCVATNM 73 (86)
T ss_pred CccEEEeCCCCEEEEEECCC--CCCCCEEEEEECC-EECCC-----CCCCEEEccCCEEEEeECCcccC-EEEEEEEEec
Confidence 35678889999999999832 4589999999997 45532 24567777789999999999998 9999999998
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 74 ~ 74 (86)
T cd05724 74 V 74 (86)
T ss_pred c
Confidence 7
No 13
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=9.7e-16 Score=99.36 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=54.1
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |.|.|.++|+|++ ..+. .+.|+.+.+++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus 1 G~~v~L~C~~~---g~P~p~v~W~k~~-~~~~------~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~ 62 (73)
T cd04969 1 GGDVIIECKPK---AAPKPTISWSKGT-ELLT------NSSRICIWPDGSLEILNVTKSDE-GKYTCFAENFF 62 (73)
T ss_pred CCeEEEEEeee---EcCCCEEEEEECC-EEcc------cCCCEEECCCCeEEEccCChhHC-EEEEEEEECCC
Confidence 78999999997 4599999999997 4553 35678888889999999999998 99999999998
No 14
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.64 E-value=7.5e-16 Score=100.97 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=48.9
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC--C--eEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS--G--ELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~--g--~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|.|+|.+. |.|.|.|+|+||+ ..+.. .+.|+.+..+ | .|.|++++.+|+ |.|+|.|.|..
T Consensus 1 v~l~C~v~---G~P~P~i~W~k~~-~~i~~-----~~~r~~~~~~~~g~~~L~I~~~~~~D~-G~Y~C~A~N~~ 64 (75)
T cd05892 1 VKLECQIS---AIPPPKIFWKRNN-EMVQY-----NTDRISLYQDNSGRVTLLIKNVNKKDA-GWYTVSAVNEA 64 (75)
T ss_pred CEEEEEEE---ecCCCeEEEEECC-EECcC-----CCCeEEEEEcCCCcEEEEECCCChhhC-EEEEEEEEcCc
Confidence 57999998 4599999999997 55532 2457776543 3 699999999999 99999999988
No 15
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.63 E-value=1.6e-15 Score=103.68 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=64.6
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc-ceEEEeeec
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTKHR 151 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~n~ 151 (167)
++..|.+|+.+.|.|..+. |.|.|.|.|.+++. .+.. .++|+.+..+|.|+|++|+.+|+ | .|.|.|.|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~--g~P~P~i~W~~~~~-~~i~-----~~~Ri~~~~~GnL~fs~v~~~D~-g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPK--SAVPLRIYWMNSDL-LHIT-----QDERVSMGQNGNLYFANVEEQDS-HPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCC--CCCCCEEEEECCCC-cccc-----ccccEEECCCceEEEEEEehhhC-CCCeEEEEEcc
Confidence 3457889999999998643 56999999998763 3322 46788888899999999999999 9 899999999
Q ss_pred CcceEEEee
Q psy12724 152 LTGETRLSA 160 (167)
Q Consensus 152 ~~~~~~l~~ 160 (167)
.+..++++.
T Consensus 82 ~~~~~~~~~ 90 (95)
T cd05845 82 GLRTIVQKE 90 (95)
T ss_pred cccceEecC
Confidence 977766654
No 16
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=1.3e-15 Score=98.35 Aligned_cols=60 Identities=12% Similarity=0.415 Sum_probs=51.2
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++.|.|.+. |.|.|.++|+|++ ..+. ...++.+..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 ~v~l~C~~~---G~P~p~v~W~k~g-~~~~------~~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~ 60 (71)
T cd05723 1 DVIFECEVT---GKPTPTVKWVKNG-DMVI------PSDYFKIVKEHNLQVLGLVKSDE-GFYQCIAENDV 60 (71)
T ss_pred CEEEEEEEE---EeCCCEEEEEECC-eECC------CCCCEEEEecCCEEEEcCCcccC-EEEEEEEEcCC
Confidence 488999998 4599999999998 4543 24567777788999999999998 99999999988
No 17
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.63 E-value=1.2e-15 Score=99.33 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=55.3
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEE
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRL 158 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l 158 (167)
|+|.|.+. |.|.|.++|+|++ ..+.. ..+.|+....+|.|.|.+++.+|+ |.|+|.|.|.. +.++.|
T Consensus 1 a~l~C~~~---G~P~p~v~W~k~~-~~~~~----~~~~~~~~~~~g~L~i~~~~~~D~-G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAAS---GNPDPEITWFKDF-LPVDT----TSNGRIKQLRSGALQIENSEESDQ-GKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEe---EecCCEEEEEECC-EECcc----CCCCCEEEcCCcEEEECCCChhhC-EEEEEEEECCCCceEcccEEE
Confidence 68999998 4599999999997 45532 135688888889999999999998 99999999988 344455
Q ss_pred ee
Q psy12724 159 SA 160 (167)
Q Consensus 159 ~~ 160 (167)
++
T Consensus 72 ~v 73 (74)
T cd05738 72 YV 73 (74)
T ss_pred EE
Confidence 43
No 18
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=1.4e-15 Score=99.34 Aligned_cols=64 Identities=27% Similarity=0.478 Sum_probs=51.5
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |+|.|.++|+||+ ..+... ....++. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 G~~v~l~C~~~---G~P~p~i~W~k~g-~~i~~~---~~~~~~~-~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 64 (76)
T cd05867 1 GETARLDCQVE---GIPTPNITWSING-APIEGT---DPDPRRH-VSSGALILTDVQPSDT-AVYQCEARNRH 64 (76)
T ss_pred CCeEEEEEEee---EeCCCeEEEEECC-EECCCC---CCCceEE-eeCCEEEECCCChhhC-EEEEEEEECCC
Confidence 78999999998 4599999999997 555321 1123444 4678999999999998 99999999987
No 19
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.62 E-value=1.3e-15 Score=99.77 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=48.9
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC----eEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG----ELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g----~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|+|.+. |.|.|.|+|+|++ ..+.. ...|+.+..++ .|.|.+++.+|+ |.|+|.|.|.+
T Consensus 1 v~l~C~v~---G~P~P~v~W~k~~-~~l~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~ 64 (75)
T cd05893 1 VRLECRVS---GVPHPQIFWKKEN-ESLTH-----NTDRVSMHQDNCGYICLLIQGATKEDA-GWYTVSAKNEA 64 (75)
T ss_pred CEEEEEEe---EecCCEEEEEECC-EECCC-----CCCeEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEcCC
Confidence 57999998 4599999999997 45532 34567665443 699999999999 99999999998
No 20
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.62 E-value=2.2e-15 Score=100.66 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=59.5
Q ss_pred EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a 148 (167)
.-.+.++.+..|+++.|.|.+.| .|.|.++|+|++ ..+. .+.++.+ .++.|.|.+++.+|+ |.|+|.|
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g---~p~p~v~W~k~g-~~~~------~~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a 70 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASG---NPRPAYRWLKNG-QPLA------SENRIEV-EAGDLRITKLSLSDS-GMYQCVA 70 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeE---eCCCEEEEEECC-EECC------CCCeEEE-eCCEEEEeeCCHHHC-EEEEEEE
Confidence 33456788999999999999984 599999999997 4542 2445554 578999999999998 9999999
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.|..
T Consensus 71 ~N~~ 74 (85)
T cd05728 71 ENKH 74 (85)
T ss_pred ECCC
Confidence 9987
No 21
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.62 E-value=2.5e-15 Score=100.79 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=57.3
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----cCCeEEEeecCcCCCCcceEEEeeecC---c
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQCRTKHRL---T 153 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~ 153 (167)
++|.|+|.+.+. +++.+.++|+||+ ..|... ..+.||.+. .+|.|.|+|++.+|+ |+|+|.|+|.+ +
T Consensus 1 ~~~~l~C~v~~d-~~l~~~~~W~~dg-~~i~~~---~~~~~~~~~~~~~~~~~L~I~nv~~~ds-G~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHD-HSLDIVFTWSFNG-HLIDFQ---KDGDHFERVGGQDSAGDLMIRSIQLKHA-GKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccC-CCCCcEEEEEECC-EECccc---CCCccEEEeccCCCCCcEEEecCCHHHC-EEEEEEEEcccCceE
Confidence 479999999753 4568889999998 566321 134577663 567999999999999 99999999988 5
Q ss_pred ceEEEeee
Q psy12724 154 GETRLSAT 161 (167)
Q Consensus 154 ~~~~l~~~ 161 (167)
+.+.|.+.
T Consensus 75 a~a~L~V~ 82 (85)
T cd05853 75 AAADLIVR 82 (85)
T ss_pred EEEEEEEe
Confidence 56666653
No 22
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.61 E-value=1.5e-15 Score=97.53 Aligned_cols=59 Identities=29% Similarity=0.590 Sum_probs=51.0
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+. |.|.|.++|+|++ ..+. ...++.+..++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus 1 v~L~C~~~---g~P~p~i~W~k~g-~~~~------~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 59 (69)
T cd05746 1 VQIPCSAQ---GDPEPTITWNKDG-VQVT------ESGKFHISPEGYLAIRDVGVADQ-GRYECVARNTI 59 (69)
T ss_pred CEeEecce---EeCCCEEEEEECC-EECC------CCCCEEECCCCEEEECcCChhhC-EEEEEEEECCC
Confidence 57999998 4599999999987 5553 35678888889999999999998 99999999998
No 23
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=4.8e-15 Score=99.91 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeE-EeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC---cce
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELF-VDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL---TGE 155 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~-~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~ 155 (167)
|++|.|.|.+. |+|.|.+.|+|++...+. +........|+.+..+|.|.|.+++.+|+ |.|.|.|.|.. ...
T Consensus 1 G~~v~L~C~~~---g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEAT---GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDV-GYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECC---ccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhC-EEEEEEEEcCCCceEEE
Confidence 78999999997 559999999998743221 11000135688888889999999999998 99999999976 456
Q ss_pred EEEeeeC
Q psy12724 156 TRLSATK 162 (167)
Q Consensus 156 ~~l~~~~ 162 (167)
+.|.+.+
T Consensus 77 ~~l~V~~ 83 (90)
T cd05726 77 AYLEVTD 83 (90)
T ss_pred EEEEEee
Confidence 6777654
No 24
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=5.6e-15 Score=101.50 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=63.3
Q ss_pred EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceE
Q psy12724 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~ 145 (167)
.-.+.+..+..|+++.|.|.+. |.|.|.++|+||+ ..+. .+.++.+.. ...|.|.++..+|+ |.|+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~---G~p~p~v~W~kdg-~~l~------~~~~~~~~~~~~~s~L~I~~~~~~D~-G~Yt 72 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVT---GTQPITCTWMKFR-KQIQ------EGEGIKIENTENSSKLTITEGQQEHC-GCYT 72 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEc---ccCCCceEEEECC-EEec------CCCcEEEEecCCeeEEEECCCChhhC-EEEE
Confidence 3445677899999999999998 5699999999997 5663 234555542 45799999999999 9999
Q ss_pred EEeeecC---cceEEEee
Q psy12724 146 CRTKHRL---TGETRLSA 160 (167)
Q Consensus 146 C~a~n~~---~~~~~l~~ 160 (167)
|.|.|.+ .+.+.|.+
T Consensus 73 c~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 73 LEVENKLGSRQAQVNLTV 90 (98)
T ss_pred EEEEcCCCceeEEEEEEE
Confidence 9999998 33445554
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.61 E-value=5e-15 Score=101.48 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=55.9
Q ss_pred EecCeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccC----CeEEEeecCcCCCCcceE
Q psy12724 71 NIMDEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPS----GELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~----g~L~I~~v~~~D~~G~Y~ 145 (167)
.+.+..+.+|+++.|.|.+.| .|. |.++|+|.++..+.. .+.|+.+..+ +.|.|.+++.+|+ |.|+
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G---~P~~p~i~W~~~~g~~l~~-----~~~r~~v~~~~~~~~~L~I~~v~~~D~-G~Yt 76 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAG---EAKDKDISWFSPNGEKLTP-----NQQRISVVRNDDYSSTLTIYNANIDDA-GIYK 76 (96)
T ss_pred eCCccEECCCCeEEEEEEEeC---CCCCCEEEEECCCCcCccc-----cCCeEEEEeCCCCceEEEEeccChhhC-EEEE
Confidence 345667889999999999984 574 799999843345532 2446555432 5799999999998 9999
Q ss_pred EEeeecC
Q psy12724 146 CRTKHRL 152 (167)
Q Consensus 146 C~a~n~~ 152 (167)
|.|+|.+
T Consensus 77 C~A~N~~ 83 (96)
T cd05865 77 CVVSNED 83 (96)
T ss_pred EEEEcCC
Confidence 9999986
No 26
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=5.6e-15 Score=100.46 Aligned_cols=76 Identities=26% Similarity=0.413 Sum_probs=61.2
Q ss_pred eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec-----CcCCCCc
Q psy12724 68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV-----GPEDGYK 142 (167)
Q Consensus 68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v-----~~~D~~G 142 (167)
|.-.+.+..+.+|+++.|.|.+.+ +|.|.++|+||+ ..+... ...++.+..+|.|.|.++ ..+|+ |
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g---~P~p~i~W~k~g-~~l~~~----~~~~~~~~~~~~l~i~~v~~~~~~~~D~-G 72 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEG---EPPPKIEWKKDG-VLLNLV----SDERRQQLPNGSLLITSVVHSKHNKPDE-G 72 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeeccc---CCCCEEEEEECC-eECccc----cCcceEEccCCeEEEeeeeccCCCCCcC-E
Confidence 344567788899999999999984 599999999987 555321 234567778899999988 58998 9
Q ss_pred ceEEEeeec-C
Q psy12724 143 SYQCRTKHR-L 152 (167)
Q Consensus 143 ~Y~C~a~n~-~ 152 (167)
.|+|.|.|. .
T Consensus 73 ~Y~C~a~N~~~ 83 (95)
T cd05722 73 FYQCVAQNDSL 83 (95)
T ss_pred EEEEEEECCcc
Confidence 999999999 6
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.61 E-value=3.4e-15 Score=97.77 Aligned_cols=64 Identities=14% Similarity=0.314 Sum_probs=50.6
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |+|.|.++|+|++ .++... ...+.....++.|.|.+++.+|+ |.|+|.|+|..
T Consensus 1 g~~~~l~C~a~---G~P~P~i~W~k~g-~~i~~~----~~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~ 64 (76)
T cd05868 1 GEDGTLICRAN---GNPKPSISWLTNG-VPIEIA----PTDPSRKVDGDTIIFSKVQERSS-AVYQCNASNEY 64 (76)
T ss_pred CCCEEEEEEee---EeCCCeEEEEECC-EEcccc----CCCceEEecCCEEEECCCCHhhC-EEEEEEEEcCC
Confidence 78999999998 5599999999997 566321 11222233456899999999998 99999999998
No 28
>KOG4222|consensus
Probab=99.61 E-value=2.1e-15 Score=136.42 Aligned_cols=134 Identities=25% Similarity=0.414 Sum_probs=108.6
Q ss_pred eEEEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--------eE-------EEeeeE
Q psy12724 5 PVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--------FV-------VSQSYT 69 (167)
Q Consensus 5 ~~av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~v-------~~g~y~ 69 (167)
-+||++..|++.+.++.+..|+.++|+|.-+..+.+ |+++|.||+-........+ ++ ..|.|.
T Consensus 126 ~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpe--ptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~ 203 (1281)
T KOG4222|consen 126 IVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPE--PTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYA 203 (1281)
T ss_pred EEEEechhcccCcccccccccceeEEeccCCCCCCC--CcceeecCCCccccccceeEEEecCCcEEEeccccCCCceee
Confidence 579999999999999999999999999998776665 6899999965332111110 11 279999
Q ss_pred EEec--------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724 70 VNIM--------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123 (167)
Q Consensus 70 c~~~--------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~ 123 (167)
|.+. ++.+..|.++.|.|.+. |+|.|.+.|.|++. .+ ...||.
T Consensus 204 CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~---GdP~P~Vrwkk~~~-~~-------P~~ry~ 272 (1281)
T KOG4222|consen 204 CVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVG---GDPQPTVRWKKDDP-SL-------PRSRYS 272 (1281)
T ss_pred eeecccccccccccceeeeccCCccccccccceeecccccccccccC---CCCCCceeeeccCC-CC-------Ccccee
Confidence 9763 35678999999999998 67999999999873 44 367888
Q ss_pred EccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 124 VLPS-GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 124 ~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++.+ -+|.|.+++..|+ |.|.|.|.|.+
T Consensus 273 i~~d~qtl~i~r~tp~de-g~y~C~a~n~v 301 (1281)
T KOG4222|consen 273 ILDDTQTLRIDRVTPTDE-GTYVCPAENLV 301 (1281)
T ss_pred eeeccccccccccCCCcc-cceeeeccccc
Confidence 8876 7899999999998 99999999987
No 29
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.60 E-value=5.1e-15 Score=99.32 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=55.9
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeec
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
..+.+|+++.|.|.+. |+|.|.++|+|++ ..+.+ .++|+.+.. .+.|.|.++..+|+ |.|+|.|.|.
T Consensus 5 ~~v~~G~~v~l~c~~~---G~P~P~v~W~k~~-~~i~~-----~~~r~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~N~ 74 (86)
T cd05894 5 IVVVAGNKLRLDVPIS---GEPAPTVTWSRGD-KAFTE-----TEGRVRVESYKDLSSFVIEGAEREDE-GVYTITVTNP 74 (86)
T ss_pred EEEEcCCEEEEEeeEe---ecCCCeEEEEECC-EECcc-----CCCeEEEEEcCCeEEEEECCCccCcC-EEEEEEEEeC
Confidence 4678999999999998 5699999999997 56642 234665543 35799999999999 9999999999
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 75 ~ 75 (86)
T cd05894 75 V 75 (86)
T ss_pred C
Confidence 8
No 30
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=7.9e-15 Score=99.77 Aligned_cols=72 Identities=21% Similarity=0.430 Sum_probs=59.1
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEE
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C 146 (167)
..+.+..+.+|+++.|.|.+.| .|. .++|+|+++..+. .+.|+.+..+| .|.|++++.+|+ |.|+|
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G---~P~-~v~W~k~~g~~~~------~~~r~~~~~~g~~~~L~I~~v~~~D~-G~Y~C 73 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIG---EPE-SIDWYNPQGEKIV------SSQRVVVQKEGVRSRLTIYNANIEDA-GIYRC 73 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEE---eCC-eEEEEeCCCeEec------CCCCEEEEeCCCeeEEEEecCChHHC-EEEEE
Confidence 4566788999999999999984 477 7899986555553 34677777666 799999999999 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
.|+|..
T Consensus 74 ~A~N~~ 79 (92)
T cd05866 74 QATDAK 79 (92)
T ss_pred EEEcCC
Confidence 999987
No 31
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=1e-14 Score=99.86 Aligned_cols=78 Identities=24% Similarity=0.490 Sum_probs=58.8
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceE
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~ 145 (167)
-..++..+.+|++++|.|.+. |.|.|.++|+|++ +..+.... ...++|+.+.. ++.|.|.+++.+|+ |.|+
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~~---G~P~p~i~W~k~~~g~~~~~~~-~~~~~r~~v~~~~~~~~L~I~~v~~~D~-G~Y~ 80 (98)
T cd05870 6 IQLKNETTVENGAATLSCKAE---GEPIPEITWKRASDGHTFSEGD-KSPDGRIEVKGQHGESSLHIKDVKLSDS-GRYD 80 (98)
T ss_pred EeeccEEEcCCCcEEEEEecc---cCCCCeEEEEECCCCceeccCC-cCcCceEEEeecCCeeEEEEeeCCcCCC-EEEE
Confidence 345678899999999999998 4599999999953 22332100 01245776653 34799999999998 9999
Q ss_pred EEeeecC
Q psy12724 146 CRTKHRL 152 (167)
Q Consensus 146 C~a~n~~ 152 (167)
|.|.|.+
T Consensus 81 C~A~N~~ 87 (98)
T cd05870 81 CEAASRI 87 (98)
T ss_pred EEEeccC
Confidence 9999998
No 32
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=7.4e-15 Score=98.43 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=56.1
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
+.+..+.+|+++.|+|.+. |+|.|.++|+|++. .+.+ ..++. ..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~---g~P~p~v~W~k~~~-~~~~------~~~~~-~~~~~L~i~~v~~~D~-G~Y~C~a~N~ 75 (88)
T cd04968 8 PKDTYALKGQNVTLECFAL---GNPVPQIKWRKVDG-SMPS------SAEIS-MSGAVLKIPNIQFEDE-GTYECEAENI 75 (88)
T ss_pred CCceEEeCCCcEEEEEEee---EeCCCEEEEEECCC-cCCC------ccEEE-EeCCEEEECCCCcccC-EEEEEEEEEC
Confidence 4567788999999999998 55999999999874 3321 22232 4678999999999998 9999999998
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 76 ~ 76 (88)
T cd04968 76 K 76 (88)
T ss_pred C
Confidence 7
No 33
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.59 E-value=5.1e-15 Score=101.35 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=61.1
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcc
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG 154 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~ 154 (167)
..+.+|+.++|+|..+. +.|.|.++|+|++ ..+... ....++....+|.|+|++|+.+|+ |.|+|.|+|.++.
T Consensus 13 ~~v~eG~~~~L~C~pP~--g~P~p~~~W~k~~-~~~~~~---~d~r~~~~~~~G~L~fs~v~~~D~-g~Y~C~A~n~~~~ 85 (96)
T cd05727 13 VKVKEGWGVVLFCDPPP--HYPDLSYRWLLNE-FPNFIP---EDGRRFVSQTNGNLYIAKVEASDR-GNYSCFVSSPSST 85 (96)
T ss_pred eeeeeCCcEEEeeCCCC--CCCCCEEEEEECC-cccccc---cCCCeEEeCCCCcEEEeecCHhhC-ceeEEEEEecccC
Confidence 46889999999999875 5689999999997 333211 123455555689999999999999 9999999999876
Q ss_pred eEEEee
Q psy12724 155 ETRLSA 160 (167)
Q Consensus 155 ~~~l~~ 160 (167)
+.+.+.
T Consensus 86 ~~~~~~ 91 (96)
T cd05727 86 KSVFSK 91 (96)
T ss_pred CcccCC
Confidence 655443
No 34
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1e-14 Score=94.50 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=53.0
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+.+ .|.|.++|+++++..+. ...++....+|.|.|.++..+|+ |.|+|.|.|..
T Consensus 1 G~~~~l~C~~~g---~P~p~v~W~~~~~~~~~------~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~ 63 (74)
T cd05764 1 GQRATLRCKARG---DPEPAIHWISPDGKLIS------NSSRTLVYDNGTLDILITTVKDT-GSFTCIASNAA 63 (74)
T ss_pred CCeEEEEEEccC---cCCCEEEEEeCCCEEec------CCCeEEEecCCEEEEEECChhhC-EEEEEEEECCC
Confidence 789999999984 59999999986544442 34567777889999999999998 99999999987
No 35
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.58 E-value=1.1e-14 Score=98.59 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=54.5
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--C--CeEEEeecCcCCCCcceEEEee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--S--GELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--~--g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
...+.+|+++.|.|.+. |+|.|.++|+|++ ..+. .+.++.+.. + ..|.|.+++.+|+ |.|+|.|.
T Consensus 10 ~v~v~~G~~v~L~C~v~---G~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~ 78 (92)
T cd05737 10 VVTIMEGKTLNLTCTVF---GDPDPEVSWLKND-QALA------LSDHYNVKVEQGKYASLTIKGVSSEDS-GKYGIVVK 78 (92)
T ss_pred eEEEeCCCcEEEEEEEE---ecCCCeEEEEECC-EECc------cCCCEEEEEcCCCEEEEEEccCChhhC-EEEEEEEE
Confidence 35788999999999998 4599999999997 5553 234454432 2 2699999999999 99999999
Q ss_pred ecC
Q psy12724 150 HRL 152 (167)
Q Consensus 150 n~~ 152 (167)
|..
T Consensus 79 N~~ 81 (92)
T cd05737 79 NKY 81 (92)
T ss_pred ECC
Confidence 987
No 36
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=7.8e-15 Score=93.97 Aligned_cols=58 Identities=29% Similarity=0.590 Sum_probs=49.3
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|.|.|.+. |+|.|.++|+|+++ .+ ..+++.+..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 v~l~C~~~---g~P~p~v~W~k~~~-~~-------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~ 58 (69)
T cd05725 1 VEFQCEVG---GDPVPTVLWRKEDG-EL-------PKGRAEILDDKSLKIRNVTAGDE-GSYTCEAENMV 58 (69)
T ss_pred CEEEEECc---cCCCCEEEEEECCc-cC-------CCCcEEEeeCCEEEECcCChhHC-EEEEEEEEcCC
Confidence 57999998 45999999999973 33 24567777888999999999998 99999999987
No 37
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=9.9e-15 Score=100.92 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=54.4
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--------CCeEEEeecCcCCCCcceE
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--------SGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--------~g~L~I~~v~~~D~~G~Y~ 145 (167)
+..+.+|+++.|.|.+.|+ .|.|.++|+||+ .+|.. +.++.+.. .+.|.|.++..+|+ |.|+
T Consensus 12 ~~~v~~G~~v~L~c~v~g~--~P~p~v~W~Kdg-~~i~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Yt 81 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAY--PPPPHINWTYDN-RTLTN------KLTEIVTSENESEYRYVSELKLVRLKESEA-GTYT 81 (101)
T ss_pred eEEEECCCCEEEEEEEEec--CCCCccEEEeCC-eeCCC------CcceeEEEeccCcceEEEEEEEeecCHhhC-eeEE
Confidence 3578899999999999851 589999999997 56631 22322222 25799999999999 9999
Q ss_pred EEeeecC
Q psy12724 146 CRTKHRL 152 (167)
Q Consensus 146 C~a~n~~ 152 (167)
|.|+|..
T Consensus 82 c~A~N~~ 88 (101)
T cd04975 82 FLASNSD 88 (101)
T ss_pred EEEECCC
Confidence 9999998
No 38
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=1.2e-14 Score=94.50 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |+|.|.++|++++ ..+... .........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 G~~~~l~C~~~---g~P~p~i~W~~~g-~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~~ 64 (76)
T cd04978 1 GETGRLDCEAE---GIPQPTITWRLNG-VPIEEL----PPDPRRRVDGGTLILSNVQPNDT-AVYQCNASNVH 64 (76)
T ss_pred CCeEEEEEEce---eeCCCEEEEEECC-EECCCC----CCcceEEccCCEEEECCCChhhC-EEEEEEEEccC
Confidence 78999999997 5699999999997 555321 11223445678999999999998 99999999987
No 39
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.57 E-value=8.2e-14 Score=114.65 Aligned_cols=121 Identities=15% Similarity=0.272 Sum_probs=87.1
Q ss_pred EEEEEeCCcEEEEeec-----CCCCCCcceeeEEeeCCCc---eee-ecCCce-------EEEeeeEEEecC--------
Q psy12724 19 DVFVIKGNAAVFKCNL-----PSFVSDHLDVVSWADTDGG---QYQ-IDNQDF-------VVSQSYTVNIMD-------- 74 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a-----~~~~~~~~~~i~W~k~~~~---~~~-~~~~~~-------v~~g~y~c~~~~-------- 74 (167)
...+.+|+.+.|+|.+ .+++ .+.++|+|+++. ... .++.+. -.+|.|+|.+.|
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCC---CceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 4467899999999997 4554 358999998642 111 122221 138999998754
Q ss_pred -------------------eEEEeCCcEEEEeeeC-Cc-cCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe
Q psy12724 75 -------------------EHVLKGNSAVLKCHIP-SF-VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133 (167)
Q Consensus 75 -------------------~~v~~G~~a~l~C~~~-~~-~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~ 133 (167)
+.+.+|..+.|.|... .+ .++|.|.++|+|++ .+ ...|+...++|.|.|.
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~--~~-------~~~r~~~~~~~~L~i~ 182 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR--RL-------RNKRLKQRTPGIITIE 182 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC--cc-------CCcceEecCCCeEEEe
Confidence 1234688999999732 11 14688999998864 22 2467777778999999
Q ss_pred ecCcCCCCcceEEEeeecC
Q psy12724 134 DVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 134 ~v~~~D~~G~Y~C~a~n~~ 152 (167)
+++.+|+ |.|+|.|.|..
T Consensus 183 ~v~~~d~-G~Y~C~~~n~~ 200 (326)
T PHA02785 183 DVRKNDA-GYYTCVLKYIY 200 (326)
T ss_pred ecChhhC-eEEEEEEEecc
Confidence 9999999 99999999976
No 40
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.56 E-value=2.3e-14 Score=97.25 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=56.2
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCcCCCCcceEEEeeecC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+..+..|+++.|.|.+.| .|.|.++|+|++ ..+.. ...++....++ .|.|.+++.+|+ |.|+|.|.|.+
T Consensus 12 ~~~~~~G~~v~L~C~~~g---~P~p~v~W~k~g-~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~ 81 (95)
T cd05730 12 NATANLGQSVTLACDADG---FPEPTMTWTKDG-EPIES-----GEEKYSFNEDGSEMTILDVDKLDE-AEYTCIAENKA 81 (95)
T ss_pred ceEEeCCCCEEEEEeccE---eCCCEEEEEECC-EECcC-----CCCEEEEeCCCCEEEECCCChhhC-EEEEEEEEcCC
Confidence 457789999999999984 599999999997 45532 23566555554 699999999998 99999999998
No 41
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.56 E-value=1.6e-14 Score=97.52 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=50.9
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCC---CeeeEEeeeecCCceEEE----------ccCCeEEEeecCcCCCCcceEE
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQ---GEELFVDMTESTDGKYLV----------LPSGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~---~~~l~~~~~~~~~~r~~~----------~~~g~L~I~~v~~~D~~G~Y~C 146 (167)
|++|.|.|.+. |+|.|.|+|+|++ +..+.+. ....... ...+.|.|.+++.+|+ |.|+|
T Consensus 1 G~~v~l~C~v~---g~P~P~i~W~k~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C 72 (90)
T cd04974 1 GSDVEFHCKVY---SDAQPHIQWLKHVEVNGSKYGPD----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDA-GEYTC 72 (90)
T ss_pred CCcEEEEEEEe---CCCCCeEEEEEecccCCceeCCC----CCceEEEEEecCCcccccccceEEEeccccccC-cEEEE
Confidence 78999999998 5699999999963 1222110 1111111 1235799999999999 99999
Q ss_pred EeeecC---cceEEEee
Q psy12724 147 RTKHRL---TGETRLSA 160 (167)
Q Consensus 147 ~a~n~~---~~~~~l~~ 160 (167)
.|.|.+ ...+.|++
T Consensus 73 ~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 73 LAGNSIGPSHHSAWLTV 89 (90)
T ss_pred EeecccCcccCCEEEEe
Confidence 999998 44555554
No 42
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.56 E-value=3.1e-14 Score=96.29 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=58.8
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEE
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C 146 (167)
-.+++..+.+|+++.|.|.+.+ +|.|.+.|+|++ ..+. .+.|+.+.. .+.|.|.+++.+|+ |.|.|
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g---~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C 76 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDG---EPAPTVTWMREG-QIIV------SSQRHQITSTEYKSTFEISKVQMSDE-GNYTV 76 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEee---cCCCEEEEEECC-EECC------CCCcEEEEEcCCeeEEEECCCCcccC-EeEEE
Confidence 3456788999999999999984 599999999997 4543 244665544 35899999999998 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
.|+|.+
T Consensus 77 ~a~N~~ 82 (92)
T cd05747 77 VVENSE 82 (92)
T ss_pred EEEcCC
Confidence 999988
No 43
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=2.6e-14 Score=96.93 Aligned_cols=68 Identities=15% Similarity=0.315 Sum_probs=55.3
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeec
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
.++.+.+|++++|.|.+. |. .|.++|+|++ ..+. .+++.+.. ++.|.|.+++.+|+ |.|+|.|.|.
T Consensus 11 ~~~~v~~g~~v~l~C~a~---g~-~p~i~W~kng-~~l~-------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~ 77 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAE---GQ-ATYIWWVNNG-SLLV-------PPRLQLSNDNRTLTFNNVTRSDT-GHYQCEASNE 77 (91)
T ss_pred CccccccCCcEEEEEEeC---CC-CCEEEEEECC-EECC-------CCCEEEeCCCCEEEECcCChhhC-EEEEEEEEcC
Confidence 356888999999999998 45 7899999997 4442 34555543 46899999999998 9999999999
Q ss_pred Cc
Q psy12724 152 LT 153 (167)
Q Consensus 152 ~~ 153 (167)
..
T Consensus 78 ~G 79 (91)
T cd05740 78 VS 79 (91)
T ss_pred CC
Confidence 83
No 44
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.55 E-value=1.3e-13 Score=113.48 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=84.1
Q ss_pred EeEEEEEeCCcEEEEeec-----CCCCCCcceeeEEeeCCCc---ee--eecCCceE------EEeeeEEEecC------
Q psy12724 17 VYDVFVIKGNAAVFKCNL-----PSFVSDHLDVVSWADTDGG---QY--QIDNQDFV------VSQSYTVNIMD------ 74 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a-----~~~~~~~~~~i~W~k~~~~---~~--~~~~~~~v------~~g~y~c~~~~------ 74 (167)
+....+.+|..+.|.|.. .+.+. +.+.|.+++.. .+ .+++.+.+ ..|.|+|.+.+
T Consensus 128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~---~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 128 SYPQIVNERSTGEMVCPNINAFIASNVN---ADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred eccceecccCcEEEECCChhhcccCCCC---ceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence 344557799999999973 23332 57999886320 00 01111111 27999998742
Q ss_pred -------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----
Q psy12724 75 -------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---- 125 (167)
Q Consensus 75 -------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---- 125 (167)
..+..|+++.|.|.+.+..+...|.+.|+||+ ..+.... +...+|+...
T Consensus 205 ~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng-~~i~~~~-~~~~~~~~~~~~~~ 282 (326)
T PHA02785 205 YNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNG-MYYEEDD-EDGDGRISVANKIY 282 (326)
T ss_pred EeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECC-EECCCcC-CCCceeEEEecCcc
Confidence 11235999999999986421112589999997 5552110 0012233221
Q ss_pred -------cCCeEEEeecCcCCCCcceEEEeeecCcceEE
Q psy12724 126 -------PSGELHIRDVGPEDGYKSYQCRTKHRLTGETR 157 (167)
Q Consensus 126 -------~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~ 157 (167)
..+.|.|.+++.+|+ |.|+|.|.|..+..++
T Consensus 283 ~~~~~~~~~~~L~I~~V~~~D~-G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 283 TTDKRRVITSRLNINPVKEEDA-TTFTCMAFTIPSISKT 320 (326)
T ss_pred ccccceeeeEEEEECCcchhcC-eeeEEEEEeccCceEe
Confidence 146799999999998 9999999998854443
No 45
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.55 E-value=2.2e-14 Score=96.55 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=55.6
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc----C---CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP----S---GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~----~---g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+.+ .|.|.++|+|++ ..+.+ ..+||.+.. + ..|.|.++..+|+ |.|+|.|.|.+
T Consensus 1 g~~~~l~C~~~g---~p~~~i~W~k~~-~~i~~-----~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~-G~YtC~A~N~~ 70 (88)
T cd05735 1 GQKKEMSCTAHG---EKPIIVRWEKED-RIINP-----EMSRYLVSTKEVGDEVISTLQILPTVREDS-GFFSCHAINSY 70 (88)
T ss_pred CCeEEEEEEEEC---CCCCEEEEeeCC-EECCC-----CCCcEEEEEecCCCcEEEEEEECCCCcccC-EEEEEEEEcCC
Confidence 789999999984 599999999997 45532 235665542 1 4699999999998 99999999998
Q ss_pred ---cceEEEeee
Q psy12724 153 ---TGETRLSAT 161 (167)
Q Consensus 153 ---~~~~~l~~~ 161 (167)
+..+.|++.
T Consensus 71 G~~~~~~~L~V~ 82 (88)
T cd05735 71 GEDRGIIQLTVQ 82 (88)
T ss_pred CcceEEEEEEEe
Confidence 445566653
No 46
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.55 E-value=1.8e-14 Score=94.16 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=48.0
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC--C--eEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS--G--ELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~--g--~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.| .|.|.++|+||+ ..+.. ...|+.+..+ | .|.|.+++.+|+ |.|+|.|.|.+
T Consensus 1 v~L~C~v~G---~P~P~v~W~k~~-~~i~~-----~~~r~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 64 (75)
T cd05744 1 VRLECRVSA---IPPPQIFWKKNN-EMLTY-----NTDRISLYQDNCGRICLLIQNANKEDA-GWYTVSAVNEA 64 (75)
T ss_pred CEEEEEEee---cCCCeEEEEECC-EECCC-----CCCcEEEEEcCCCeEEEEECCCCcccC-EEEEEEEEcCC
Confidence 579999984 599999999997 55531 2356666443 3 599999999998 99999999998
No 47
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=2e-14 Score=93.54 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=48.2
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|.|.|.+. |.|.|.++|+|++. ...+. ....|+.+.. ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 a~l~C~~~---G~P~P~v~W~k~~~-~~~~~---~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~A~N~~ 63 (75)
T cd05763 1 ARLECAAT---GHPTPQIAWQKDGG-TDFPA---ARERRMHVMPEDDVFFIVDVKIEDT-GVYSCTAQNTA 63 (75)
T ss_pred CEeEeecc---cccCCEEEEEeCCC-ccCCc---ccccceEEecCCCEEEEeeCCcccC-EEEEEEEEcCC
Confidence 57999998 55999999999974 22221 1244565543 56899999999998 99999999987
No 48
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.55 E-value=1.6e-14 Score=94.83 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=50.1
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+.+ .|.|.++|+|+++ .+. ...|+.+... +.|.|++++.+|+ |.|+|.|.|..
T Consensus 1 G~~v~l~C~~~g---~P~p~v~W~~~~~-~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~ 65 (78)
T cd05743 1 GETVEFTCVATG---VPTPIINWRLNWG-HVP------DSARVSITSEGGYGTLTIRDVKESDQ-GAYTCEAINTR 65 (78)
T ss_pred CCEEEEEEEEEE---ecCCEEEEEECCe-ECC------CCCCEEEEECCCEEEEEECCCChHHC-EEEEEEEEecC
Confidence 789999999984 5999999999873 442 2345555432 5799999999998 99999999987
No 49
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=4e-14 Score=96.36 Aligned_cols=62 Identities=18% Similarity=0.400 Sum_probs=50.2
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C~a~n~~ 152 (167)
|+.+.|.|.+. |+|.|.++|+|++ ..+.. ...++. ..+|.|.|.++. .+|+ |.|+|.|+|..
T Consensus 19 ~~~v~l~C~a~---G~P~P~i~W~k~~-~~i~~-----~~~~~~-~~~g~L~I~~~~~~~D~-G~Y~C~A~N~~ 81 (93)
T cd05849 19 EGKVSVNCRAR---ANPFPIYKWRKNN-LDIDL-----TNDRYS-MVGGNLVINNPDKYKDA-GRYVCIVSNIY 81 (93)
T ss_pred CCeEEEeCcCc---cCCCCEEEEEECC-EEccC-----CCCeEE-EECCEEEECcCCcCCCC-EEEEEEEEeCc
Confidence 45799999998 5699999999997 45531 245664 457899999985 6998 99999999988
No 50
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.53 E-value=5.2e-14 Score=95.88 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=54.3
Q ss_pred EecCeEEE---eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEE
Q psy12724 71 NIMDEHVL---KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQC 146 (167)
Q Consensus 71 ~~~~~~v~---~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C 146 (167)
.+.+..+. +|+++.|.|.+. |.|.|.++|+||+ ..+... ...++. ..+|.|.|.++. .+|+ |.|+|
T Consensus 7 ~p~~~~~~~~~~g~~v~l~C~~~---G~P~P~i~W~k~g-~~l~~~----~~~~~~-~~~g~L~i~~~~~~~D~-G~Y~C 76 (94)
T cd05848 7 EPDDAIFPTDSDEKKVILNCEAR---GNPVPTYRWLRNG-TEIDTE----SDYRYS-LIDGNLIISNPSEVKDS-GRYQC 76 (94)
T ss_pred CCCcEEccCCCCCCEEEEEEEee---ecCCCEEEEEECC-eECccC----CCceEE-eeCCeEEEccCCccCcC-EEEEE
Confidence 34444443 478999999998 4599999999997 555321 233443 457899999985 6998 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
.|.|..
T Consensus 77 ~A~N~~ 82 (94)
T cd05848 77 LATNSI 82 (94)
T ss_pred EEEcCC
Confidence 999998
No 51
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.53 E-value=7.1e-14 Score=95.15 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=56.1
Q ss_pred eEEEecCeEEEeC---CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcc
Q psy12724 68 YTVNIMDEHVLKG---NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKS 143 (167)
Q Consensus 68 y~c~~~~~~v~~G---~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~ 143 (167)
|.-.+++..+.+| ++|.|.|.+. |+|.|.++|+||+ ..+.. ..+.++.+ .+|.|.|.++. .+|+ |.
T Consensus 4 f~~~P~~~~~~~~~~g~~v~l~C~a~---g~P~p~i~W~~~g-~~l~~----~~~~~~~~-~~g~L~I~~~~~~~D~-G~ 73 (94)
T cd05850 4 FEEQPSSLLFPEGSPEEKVTLGCRAR---ASPPATYRWKMNG-TEIKF----APESRYTL-VAGNLVINNPQKARDA-GS 73 (94)
T ss_pred eEECCCCEEecCCCCCCeEEEEeEce---eCCCCEEEEEECC-EECcc----CCCceEEE-ECCeEEEccCCccCcC-EE
Confidence 3334555555455 5899999998 5699999999997 55532 12345544 57899999865 6998 99
Q ss_pred eEEEeeecCc
Q psy12724 144 YQCRTKHRLT 153 (167)
Q Consensus 144 Y~C~a~n~~~ 153 (167)
|+|.|.|...
T Consensus 74 Y~C~A~N~~G 83 (94)
T cd05850 74 YQCLAINRCG 83 (94)
T ss_pred EEEEEEcCcC
Confidence 9999999983
No 52
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=3.1e-14 Score=95.90 Aligned_cols=69 Identities=13% Similarity=0.271 Sum_probs=53.9
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE---EEccCCeEEEeecCcCCCCcceEEEee
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY---LVLPSGELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~---~~~~~g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
++..+.+|+++.|.|.+. |+|.|.++|+|++ ..+.. ..+. .....+.|.|.+++.+|. |.|+|.|.
T Consensus 8 ~~~~v~~G~~v~l~C~~~---G~P~p~v~W~~~g-~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~-g~Y~C~A~ 76 (90)
T cd04972 8 NATVVYEGGTATIRCTAE---GSPLPKVEWIIAG-LIVIQ------TRTDTLETTVDIYNLQLSNITSETQ-TTVTCTAE 76 (90)
T ss_pred cCEEEcCCCcEEEEEEEE---EcCCCeEEEEECC-EEccC------CccEEEEecCCEEEEEEecCCcccC-EEEEEEEE
Confidence 345688999999999998 4599999999997 44421 1111 112345899999999998 99999999
Q ss_pred ecC
Q psy12724 150 HRL 152 (167)
Q Consensus 150 n~~ 152 (167)
|..
T Consensus 77 N~~ 79 (90)
T cd04972 77 NPV 79 (90)
T ss_pred CCC
Confidence 998
No 53
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.53 E-value=3.5e-14 Score=95.59 Aligned_cols=69 Identities=28% Similarity=0.357 Sum_probs=56.1
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
+++..+..|+++.|.|.+. .|.|.++|+||+ .++.+ ...|+.+ .+|.|.|+|++.+|+ |.|+|.|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~----~~~~~i~W~~ng-~~i~~-----~~~r~~~-~~~~L~I~nv~~~Ds-G~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK----SNLARVVWKFDG-KVLTP-----ESAKYLL-YRDGLLIFNASEADA-GRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECC----CCCCeEEEEECC-EECCC-----CCceEEE-ECCcEEEeCCCHHHC-EEEEEEEEec
Confidence 4567889999999999975 267889999998 56642 2356655 567899999999999 9999999987
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 3
No 54
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.53 E-value=1.1e-13 Score=94.59 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=57.8
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEcc----CCeEEEeecCcCCCCcceEE
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLP----SGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C 146 (167)
..|+.+.+|++|.|+|.+.+ .|.|.+.|+|+++..+.... ....+.|+.+.. ++.|.|+|++.+|+ |.|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g---~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~-G~YtC 79 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKE---HDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDE-GEYTC 79 (95)
T ss_pred cccEEEecCCcEEEEEEEeC---CCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccC-EEEEE
Confidence 35788999999999999984 58899999998743221100 001245665432 35899999999999 99999
Q ss_pred EeeecCcce
Q psy12724 147 RTKHRLTGE 155 (167)
Q Consensus 147 ~a~n~~~~~ 155 (167)
.+......+
T Consensus 80 ~~~t~~~~~ 88 (95)
T cd05882 80 SIFTMPVRT 88 (95)
T ss_pred EEEeecccc
Confidence 999855333
No 55
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.52 E-value=1.4e-13 Score=93.27 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=57.0
Q ss_pred eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec-----CcCCCCc
Q psy12724 68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV-----GPEDGYK 142 (167)
Q Consensus 68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v-----~~~D~~G 142 (167)
+.-.+.+..+.+|+++.|.|.+.+ +|.|.++|+|++ ..+.... .....+....++|.|.+..+ +.+|+ |
T Consensus 4 i~~~p~~~~v~~G~~~~l~C~~~g---~P~p~i~W~k~g-~~l~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~-G 77 (100)
T cd07693 4 IVEHPSDLIVSKGDPATLNCKAEG---RPTPTIQWLKNG-QPLETDK-DDPRSHRIVLPSGSLFFLRVVHGRKGRSDE-G 77 (100)
T ss_pred EEecCceeEEcCCCeEEEEeeCCc---CCCCEEEEEECC-EECcccc-CCCCcceEEecCCcEEEEEeeccCCCcCcC-E
Confidence 344456778899999999999984 599999999997 5553210 01133455566776554443 78998 9
Q ss_pred ceEEEeeecC
Q psy12724 143 SYQCRTKHRL 152 (167)
Q Consensus 143 ~Y~C~a~n~~ 152 (167)
.|+|.|.|.+
T Consensus 78 ~Y~C~a~N~~ 87 (100)
T cd07693 78 VYVCVAHNSL 87 (100)
T ss_pred EEEEEEEccc
Confidence 9999999998
No 56
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.52 E-value=1.2e-13 Score=92.17 Aligned_cols=74 Identities=24% Similarity=0.477 Sum_probs=59.2
Q ss_pred eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcce
Q psy12724 68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSY 144 (167)
Q Consensus 68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y 144 (167)
|.-.+.+..+.+|+++.|.|.+.+ .|.|.++|++++ ..+. .+.++.+.. ...|.|.+++.+|+ |.|
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~---~p~~~v~W~~~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y 71 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSG---NPPPTVTWYKNG-RPLT------SSQRYQIESDGGSSSLTIKNVTREDA-GTY 71 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEE---SSSSEEEEEETT-EEEE------SSSSEEEEEETTEEEEEESSESGGGS-EEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEe---CCCCcccccccc-ccee------eeeeeeeecccceeEEccCCCChhhC-EEE
Confidence 344456678899999999999984 488999999997 5664 244555443 34799999999999 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
+|.|.|..
T Consensus 72 ~C~~~n~~ 79 (90)
T PF07679_consen 72 TCVASNSS 79 (90)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999996
No 57
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.52 E-value=9.4e-14 Score=91.52 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=54.4
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++..+.+|+++.|.|.+.+ +.|.++|+||+ .++. .+.++.+ .++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~----~~~~v~W~k~g-~~l~------~~~~~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~n~~ 68 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRD----DVQSINWTKDG-VQLG------ENNRTRI-TGEEVQIKDAVPRDS-GLYACVTSSPS 68 (79)
T ss_pred CcEEecCCCCEEEEEEecC----CCceEEEeeCC-cCCC------CCceEEE-eCCEEEECCCChhhC-EEEEEEEeCCC
Confidence 4567889999999999974 34679999997 5663 2456655 357899999999999 99999999986
No 58
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=4.8e-14 Score=91.03 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=47.0
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.| .|.|.++|+|+++ .+.. +.......++.|.|++++.+|+ |.|+|.|.|..
T Consensus 1 ~~L~C~~~G---~P~P~v~W~k~~~-~~~~------~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~ 59 (71)
T cd05876 1 LVLECIAEG---LPTPEVHWDRIDG-PLSP------NRTKKLNNNKTLQLDNVLESDD-GEYVCTAENSE 59 (71)
T ss_pred CEEEEEeeE---ecCCeEEEEECCc-CCCC------CceeEEcCCCEEEEcccCHHhC-EEEEEEEEcCC
Confidence 479999984 5999999999974 4421 2222344678999999999998 99999999998
No 59
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=7.8e-14 Score=93.34 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=52.6
Q ss_pred CcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEEE---c-cCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724 81 NSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYLV---L-PSGELHIRDVGPEDGYKSYQCRTKHRL-- 152 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~---~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~-- 152 (167)
+++.|.|.+.+ +|.| .++|+||+ ..+... ...+++.. . ..|.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 ~~~~L~C~a~g---~P~p~~~v~W~~~g-~~i~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~YtC~A~n~~g~ 72 (85)
T cd05854 1 ENLTLQCHASH---DPTMDLTFTWSLDD-FPIDLD---KPNGHYRRMEVKETIGDLVIVNAQLSHA-GTYTCTAQTVVDS 72 (85)
T ss_pred CcEEEEEEEec---CCCCCeEEEEEECC-eEcccc---CCCCcEEEEEecceEeEEEEccCChhhC-eEEEEEEecCCCC
Confidence 47899999984 4665 68999997 555321 12334422 1 357899999999999 99999999988
Q ss_pred -cceEEEeee
Q psy12724 153 -TGETRLSAT 161 (167)
Q Consensus 153 -~~~~~l~~~ 161 (167)
+..+.|.+.
T Consensus 73 ~~~~~~L~V~ 82 (85)
T cd05854 73 ASASATLVVR 82 (85)
T ss_pred EEEEEEEEEE
Confidence 445566553
No 60
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.51 E-value=8.5e-14 Score=89.62 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=46.7
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |+|.|.++|+|++ ..+. ...++. ..++.|.|.+++ |+ |.|+|.|.|.+
T Consensus 1 G~~v~L~C~a~---G~P~P~v~W~k~g-~~l~------~~~~~~-~~~~~L~i~~~~--d~-G~Y~C~A~N~~ 59 (69)
T cd05739 1 GGSVNLTCVAV---GAPMPYVKWMKGG-EELT------KEDEMP-VGRNVLELTNIY--ES-ANYTCVAISSL 59 (69)
T ss_pred CCeEEEEEEee---ecCCCEEEEEECC-EECC------Ccccee-cCccEEEEeccc--cC-eeEEEEEEeCC
Confidence 78999999998 5699999999997 4553 223333 245579999974 88 99999999998
No 61
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.51 E-value=8e-14 Score=92.47 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=53.2
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.+.+|+++.|.|.+.+ .|.|.++|+|++ ..+.+.. ...++.. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 4 ~~v~~G~~~~L~C~~~g---~P~p~i~W~k~g-~~l~~~~---~~~~~~~~~~~~~l~i~~~~~~D~-G~Y~C~a~N~~ 74 (85)
T cd05857 4 HAVPAANTVKFRCPAAG---NPTPTMRWLKNG-KEFKQEH---RIGGYKVRNQHWSLIMESVVPSDK-GNYTCVVENEY 74 (85)
T ss_pred EEcCCCCEEEEEEEcCC---CCCCEEEEEECC-EECCCCC---ceeeeEEeCCceEEEEccCCcccC-EEEEEEEEeCC
Confidence 45678999999999984 599999999997 5553210 1112222 2345799999999999 99999999987
No 62
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.51 E-value=8.6e-14 Score=91.33 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=50.5
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCC--eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQG--EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+. |.|.|.++|+|++. ..+.... .....++.....+.|.|.+++.+|+ |.|.|.|.|..
T Consensus 1 G~~v~l~C~~~---g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 70 (81)
T cd05765 1 GETASFHCDVT---GRPPPEITWEKQVHGKENLIMRP-NHVRGNVVVTNIGQLVIYNAQPQDA-GLYTCTARNSG 70 (81)
T ss_pred CCcEEEEeecc---ccCCCcEEEEecCCCCcceeecC-CcccCCEEEccccEEEEccCCcccC-EEEEEEEecCC
Confidence 78999999998 55999999999731 1111100 0012345566678999999999998 99999999987
No 63
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=7.2e-14 Score=91.82 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=50.4
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeee--ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMT--ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~--~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~ 153 (167)
|+|.|.+.| .|.|.++|+|+++... +... ....+|+.+.++|.|.|++++.+|+ |.|.|.|.|...
T Consensus 1 v~l~C~~~G---~P~P~v~W~~~~~~~~-~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G 68 (79)
T cd05734 1 VTLNCSAEG---YPPPTIVWKHSKGRGH-PQHTHTCCLAGRIQLLSNGSLLIKHVLEEDS-GYYLCKVSNDVG 68 (79)
T ss_pred CEeEeeCeE---eCCCEEEEEECCCccc-cccccccccCCCEEEecCCeEEECcCCcccC-EEEEEEEEeCCC
Confidence 579999985 5999999999753211 1000 0135677777889999999999998 999999999873
No 64
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.50 E-value=1.1e-13 Score=90.71 Aligned_cols=60 Identities=28% Similarity=0.562 Sum_probs=47.7
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++|.|.+. |.|.|.++|+|++ ..+.+ ...++.+.. ++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus 1 v~L~C~~~---g~P~p~v~W~k~g-~~l~~-----~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 61 (77)
T cd05760 1 VTLRCHID---GHPRPTYQWFRDG-TPLSD-----GQGNYSVSSKERTLTLRSAGPDDS-GLYYCCAHNAF 61 (77)
T ss_pred CEEEEEee---ecCCCcEEEEECC-EECCC-----CCccEEEeCCCCEEEEeeCCcccC-EEEEEEEEeCC
Confidence 57999998 4599999999997 55532 234554443 46899999999998 99999999986
No 65
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.50 E-value=9.8e-14 Score=94.68 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=55.0
Q ss_pred CeEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 74 DEHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
++.+.+|+.+.|.|.+.+.. .+|.|.++|+|++. .+.... ....|+.. .++.|.|.+++.+|+ |.|+|.+.|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~-~~~~~~--~~~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~~~N~ 82 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDG-KTPIPT--EERSRMHQ-QKDLLWFLPAALEDS-GLYTCVVRNS 82 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCC-CCcccc--cccceeee-cCCeEEEccCCcccC-eEEEEEEcCC
Confidence 46788999999999987410 04888999999974 331100 12344433 468999999999999 9999999998
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 83 ~ 83 (94)
T cd05756 83 T 83 (94)
T ss_pred C
Confidence 7
No 66
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.50 E-value=1.6e-13 Score=93.05 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=54.6
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC----eEEEeecCcCCCCcceE
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG----ELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g----~L~I~~v~~~D~~G~Y~ 145 (167)
..+.+..+..|+++.|.|.+.| .|. .++|++.++..+.+ .+++.+..++ .|.|.+++.+|+ |.|+
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G---~p~-~i~W~~~~~~~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~ 73 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIG---EPK-DISWFSPNGEKLVT------QQQISVVQNDDVRSTLTIYNANIEDA-GIYK 73 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEe---eCC-eEEEECCCCCEecc------CCCEEEEeCCCCEEEEEEecCCcccC-EEEE
Confidence 3456678899999999999985 464 89999854444432 2344443333 799999999998 9999
Q ss_pred EEeeecC
Q psy12724 146 CRTKHRL 152 (167)
Q Consensus 146 C~a~n~~ 152 (167)
|.|.|..
T Consensus 74 C~A~N~~ 80 (92)
T cd04977 74 CVATDAK 80 (92)
T ss_pred EEEEcCC
Confidence 9999986
No 67
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.50 E-value=1.3e-13 Score=93.43 Aligned_cols=76 Identities=20% Similarity=0.400 Sum_probs=57.7
Q ss_pred EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEE
Q psy12724 71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCR 147 (167)
Q Consensus 71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~ 147 (167)
...+..+.+|+++.|.|.+.+ .|.|.++|+|++ ..+.... ....+|+.+..+ +.|.|++++.+|+ |.|+|.
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g---~p~p~v~W~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~ 80 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEG---DPIPEITWRRAT-RNFSEGD-KSLDGRIVVRGHARVSSLTLKDVQLTDA-GRYDCE 80 (96)
T ss_pred ecCceeEecCCcEEEEEEEeE---cCCCcEEEEECC-cccCCCC-ccccceEEEeCCccEEEEEECcCCcCcC-EEeEEE
Confidence 345678899999999999984 599999999987 3442110 001346655432 4799999999998 999999
Q ss_pred eeecC
Q psy12724 148 TKHRL 152 (167)
Q Consensus 148 a~n~~ 152 (167)
|.|..
T Consensus 81 a~N~~ 85 (96)
T cd05732 81 ASNRI 85 (96)
T ss_pred EEeCC
Confidence 99998
No 68
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.49 E-value=7.1e-14 Score=90.38 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=46.2
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|+|.+.| .|.|.++|+||+ .++. ...+ +..++.|.|.++..+|+ |.|+|.|.|.+
T Consensus 1 ~~~~c~v~G---~P~P~v~W~k~g-~~l~------~~~~--~~~~~~L~I~~v~~~D~-G~YtC~a~N~~ 57 (70)
T cd05864 1 VKIPVKYYG---YPPPEVKWYKNG-QLIV------LNHT--FKRGVHLTIYEVTEKDA-GNYTVVLTNPI 57 (70)
T ss_pred CEEEeEEEE---eCCCEEEEEECC-EECC------CCCE--EccCCEEEECcCCHHHC-EEEEEEEEECC
Confidence 478999985 599999999998 5653 1223 23456899999999998 99999999998
No 69
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.49 E-value=1.7e-13 Score=93.52 Aligned_cols=73 Identities=15% Similarity=0.392 Sum_probs=53.8
Q ss_pred CeEEE-eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEee
Q psy12724 74 DEHVL-KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 74 ~~~v~-~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
+..+. .|+++.|.|.+. |.|.|.++|+|++ ..+.... ....+++.+..+ +.|.|++++.+|+ |.|+|.|.
T Consensus 10 ~~~~~~~g~~v~l~C~~~---G~P~P~v~W~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~ 83 (97)
T cd05869 10 NQTAMELEEQITLTCEAS---GDPIPSITWRTST-RNISSEE-KTLDGHIVVRSHARVSSLTLKYIQYTDA-GEYLCTAS 83 (97)
T ss_pred CceEEEcCCCEEEEEEee---EeCCCEEEEEECC-ccccCCc-cccCccEEEEcCccEEEEEEecCccCcC-EEEEEEEe
Confidence 34444 489999999998 4599999999986 4442210 012345555433 4799999999998 99999999
Q ss_pred ecC
Q psy12724 150 HRL 152 (167)
Q Consensus 150 n~~ 152 (167)
|..
T Consensus 84 N~~ 86 (97)
T cd05869 84 NTI 86 (97)
T ss_pred cCC
Confidence 998
No 70
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.49 E-value=1.2e-13 Score=89.35 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=47.8
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~ 153 (167)
+.|.|.+.| .|.|.++|+||+ ..+. .+.++ ...++.|.|.+++.+|+ |.|+|.|.|...
T Consensus 1 ~~l~c~v~g---~P~p~v~W~k~g-~~l~------~~~~~-~~~~~~L~I~~v~~~D~-G~YtC~a~N~~g 59 (71)
T cd04976 1 VRLPVKVKA---YPPPEIQWYKNG-KLIS------EKNRT-KKSGHSLTIKDVTEEDA-GNYTVVLTNKQA 59 (71)
T ss_pred CEEEeEEEE---eCCCEEEEEECC-EECC------CCCEE-EcCCCEEEECcCCHHHC-EEEEEEEEcCCc
Confidence 469999985 599999999997 5653 23344 45678999999999999 999999999883
No 71
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.49 E-value=1.5e-13 Score=91.47 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=52.5
Q ss_pred CcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceE----EEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724 81 NSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKY----LVLPSGELHIRDVGPEDGYKSYQCRTKHRL-- 152 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~----~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-- 152 (167)
+++.|.|.+.+ +|.| .++|+||+ ..+... ..+.++ ....+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 e~~~L~C~~~g---~P~p~i~~~W~~~g-~~i~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~ 72 (85)
T cd04970 1 ESITLQCHASH---DPTLDLTFTWSFNG-VPIDFD---KDGGHYRRVGGKDSNGDLMIRNAQLKHA-GKYTCTAQTVVDS 72 (85)
T ss_pred CcEEEEEEEec---CCCCCeEEEEEECC-eEeecc---CCCccEEEEecccccceEEEccCCHHhC-eeeEEEEecCCCc
Confidence 47899999974 4766 56999997 555321 112222 223568999999999999 99999999976
Q ss_pred -cceEEEeee
Q psy12724 153 -TGETRLSAT 161 (167)
Q Consensus 153 -~~~~~l~~~ 161 (167)
+..++|.+.
T Consensus 73 ~~~~~~l~V~ 82 (85)
T cd04970 73 LSASADLIVR 82 (85)
T ss_pred EEEEEEEEEE
Confidence 455666654
No 72
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.49 E-value=1.6e-13 Score=94.87 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=53.6
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---------cCCeEEEeecCcCCCCcce
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---------PSGELHIRDVGPEDGYKSY 144 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---------~~g~L~I~~v~~~D~~G~Y 144 (167)
...+..|+.+.|.|.+.|+ |.|.++|+||+ .+|.. +.+.... -.+.|.|.+++.+|+ |.|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~---P~P~v~W~kdg-~~l~~------~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~-G~Y 80 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAY---PPPQIRWLKDN-RTLIE------NLTEITTSEHNVQETRYVSKLKLIRAKEEDS-GLY 80 (101)
T ss_pred eEEEecCCcEEEEEEEEEe---CCCceEEEECC-EECcC------CcceEEeccccccceeeccEEEEeeCCHHHC-EEE
Confidence 3577889999999999955 99999999998 56532 2222111 125799999999999 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
+|.|.|..
T Consensus 81 tc~A~N~~ 88 (101)
T cd05859 81 TALAQNED 88 (101)
T ss_pred EEEEEcCC
Confidence 99999997
No 73
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.48 E-value=1.5e-13 Score=92.59 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=50.1
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCC---CeeeEEeeeecCCceEEEcc----------CCeEEEeecCcCCCCcceEE
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQ---GEELFVDMTESTDGKYLVLP----------SGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~---~~~l~~~~~~~~~~r~~~~~----------~g~L~I~~v~~~D~~G~Y~C 146 (167)
|+++.|.|.+. |+|.|.++|+|++ +..+.+. ...+..+.. .+.|.|++++.+|+ |.|+|
T Consensus 1 G~~v~L~C~~~---g~P~P~i~W~k~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C 72 (90)
T cd05858 1 GSTVEFVCKVY---SDAQPHIQWLKHVEKNGSKYGPD----GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDA-GEYTC 72 (90)
T ss_pred CCeEEEEEEEe---cCCCCEEEEEEecccCCcEeCCC----CCeeEEEeccCCceecCCceeEEEEccCCHHHC-EEEEE
Confidence 78999999998 4599999999852 1222210 111111111 14799999999999 99999
Q ss_pred EeeecC---cceEEEee
Q psy12724 147 RTKHRL---TGETRLSA 160 (167)
Q Consensus 147 ~a~n~~---~~~~~l~~ 160 (167)
.|.|.. ...+.|.+
T Consensus 73 ~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 73 LAGNSIGISHHSAWLTV 89 (90)
T ss_pred EEEeCCCcccceEEEEE
Confidence 999988 33445543
No 74
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.48 E-value=2.1e-13 Score=92.42 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=54.1
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cC---CeEEEeecCcCCCCcceEEEe
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PS---GELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~---g~L~I~~v~~~D~~G~Y~C~a 148 (167)
....+.+|+++.|.|.+.+ .|.|.+.|+|++ ..+. .+.++.+. .+ +.|.|.+++.+|+ |.|+|.|
T Consensus 9 ~~v~v~eG~~v~L~C~v~g---~P~p~i~W~k~~-~~~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a 77 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFG---NPDPEVIWFKND-QDIE------LSEHYSVKLEQGKYASLTIKGVTSEDS-GKYSINV 77 (92)
T ss_pred CcEEEcCCCEEEEEEEEEE---eCCCeEEEEECC-EECC------CCCCEEEEEcCCCEEEEEECCCChhhC-EEEEEEE
Confidence 3467889999999999974 589999999997 4443 23344332 22 2799999999998 9999999
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.|.+
T Consensus 78 ~N~~ 81 (92)
T cd05891 78 KNKY 81 (92)
T ss_pred EeCC
Confidence 9988
No 75
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=3.2e-13 Score=92.41 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=55.3
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccC-------CeEEEeecCcCC-CCcce
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPS-------GELHIRDVGPED-GYKSY 144 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-------g~L~I~~v~~~D-~~G~Y 144 (167)
+..+.+|+++.|.|.+.| .|.| .++|++++ ..+... .++||.+..+ +.|.|.+++.+| + |.|
T Consensus 10 ~~~~~~G~~v~L~C~~~g---~P~P~~v~W~~~~-~~i~~~----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~-G~Y 80 (98)
T cd05758 10 TQYAILGDKGRVECFIFS---TPPPDRIVWTWKE-NELESG----SSGRYTVETDPSPGGVLSTLTISNTQESDFQ-TSY 80 (98)
T ss_pred cEEEeCCCcEEEEEEEcc---cCCCCEeEEEECC-EEccCC----CCCCEEEEEecCCCceEEEEEECCccccccc-eeE
Confidence 456789999999999984 5998 59999997 455321 2357776543 279999999955 7 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
.|.|.|..
T Consensus 81 ~C~A~N~~ 88 (98)
T cd05758 81 NCTAWNSF 88 (98)
T ss_pred EEEEEcCC
Confidence 99999998
No 76
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=1.7e-13 Score=87.96 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=45.2
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~ 153 (167)
+.|.|.+.| .|.|.++|+||+ ..+. .+ ...+.|.|.++..+|+ |.|+|.|+|...
T Consensus 1 ~~l~c~v~g---~P~P~v~W~kdg-~~l~--------~~---~~~~~L~i~~v~~~D~-G~YtC~a~N~~g 55 (67)
T cd05863 1 VKLPVKVAA---YPPPEFQWYKDG-KLIS--------GK---HSQHSLQIKDVTEASA-GTYTLVLWNSAA 55 (67)
T ss_pred CEEEEEEEE---eCCCEEEEEECC-EECc--------cc---CCcCEEEECCCCHHHC-EEEEEEEEECCc
Confidence 479999985 499999999997 5552 11 1356899999999999 999999999983
No 77
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=1e-13 Score=90.11 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=49.8
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcceEE
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETR 157 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~ 157 (167)
+.|.|.+.| .|.|.++|+||+ .++.+ ...++.. .++.|.|.+++.+|+ |.|+|.|+|....+++
T Consensus 1 ~~l~c~v~g---~P~P~v~W~kdg-~~l~~-----~~~~~~~-~~~~L~I~~v~~~D~-G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 1 YRLTPKVKA---FPAPEVIWLKDG-LPAAE-----KCSRYHV-DGYSLVIKDVTEEDA-GIYTILLGIKQYNLFK 64 (72)
T ss_pred CeEEeeEEE---cCCCeEEEEECC-EECCC-----CCcEEEe-CCCEEEECcCCHHHC-EEEEEEEEccccceEe
Confidence 368999985 499999999997 55532 2345544 456899999999999 9999999998755543
No 78
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.46 E-value=2.4e-13 Score=88.57 Aligned_cols=70 Identities=24% Similarity=0.442 Sum_probs=53.4
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCcCCCCcceEEEeeecC---cceEEE
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGPEDGYKSYQCRTKHRL---TGETRL 158 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l 158 (167)
|.|.|.+.| .|.|.++|+|++ ..+.+. ...++.+..++ .|.|.+++.+|. |.|+|.|.|.. ...+.|
T Consensus 1 ~~L~C~v~g---~P~p~v~W~k~~-~~l~~~----~~~~~~~~~~~~~l~I~~~~~~D~-G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 1 ASLRCHAEG---IPLPRLTWLKNG-MDITPK----LSKQLTLIANGSELHISNVRYEDT-GAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred CEeEeEeee---cCCCEEEEEECC-EECCCC----CCccEEEeCCCCEEEECcCCcccC-EEEEEEEEcCCCCcceEEEE
Confidence 579999985 599999999997 455432 24567776666 599999999998 99999999987 334455
Q ss_pred eee
Q psy12724 159 SAT 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 72 ~V~ 74 (76)
T cd05736 72 FVE 74 (76)
T ss_pred EEE
Confidence 443
No 79
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.46 E-value=3.3e-13 Score=87.44 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=48.1
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++.|.|.+.| .|.|.++|+|++ ..+. .+.++.+.. .+.|.|.++..+|+ |.|+|.|.|..
T Consensus 1 ~~~l~c~~~G---~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 63 (74)
T cd05748 1 SVRLEVPISG---RPTPTVTWSKDG-KPLK------LSGRVQIETTASSTSLVIKNAERSDS-GKYTLTLKNPA 63 (74)
T ss_pred CEEEEeeEee---eCCCeEEEEECC-EEcC------CCCeEEEEECCCeEEEEECCCCcCcC-EEEEEEEECCC
Confidence 4789999984 599999999997 4552 244555543 34799999999998 99999999987
No 80
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.46 E-value=3.5e-13 Score=91.65 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=54.3
Q ss_pred eEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 75 EHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.+.+|+++.|.|...+... +|.|.++|+||+ .++. ...+. +..++.|.|.++..+|+ |.|+|.|.|..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~------~~~~~-~~~~~~L~I~~v~~~Ds-G~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLE------GDRKR-FVKGSKLLIQNVTEEDA-GNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECC------CCccE-EecCCEEEEeeCChhhC-EEEEEEEEecC
Confidence 57789999999998754322 378899999998 5653 12223 33778999999999999 99999999986
No 81
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.45 E-value=2.7e-13 Score=90.09 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a 148 (167)
-.+++..+.+|+++.|.|.+. |+|.| .|+|+||+ .++.. ++. ..++.|.|.++ .|+ |.|+|.|
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~---G~P~P~~I~W~k~g-~~l~~--------~~~-~~~s~L~i~~~--~d~-g~Y~C~A 66 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAV---GPPEPVEILWWQGG-SPLGD--------PPA-PSPSVLNVPGL--NET-SKFSCEA 66 (81)
T ss_pred CCCCceEEcCCCCEEEEEEee---eecCCeEEEEEECC-EECCC--------CCC-CCCCEEEEccc--cCC-eEEEEEE
Confidence 346678899999999999998 56999 69999997 45421 121 23568999987 588 9999999
Q ss_pred eecCc
Q psy12724 149 KHRLT 153 (167)
Q Consensus 149 ~n~~~ 153 (167)
+|.+.
T Consensus 67 ~N~~G 71 (81)
T cd05749 67 HNAKG 71 (81)
T ss_pred EeccC
Confidence 99983
No 82
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.45 E-value=2.5e-13 Score=89.90 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=46.8
Q ss_pred EEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE----EE----ccCCeEEEeecCcCCCCcceEEEeeecC-cce
Q psy12724 85 LKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY----LV----LPSGELHIRDVGPEDGYKSYQCRTKHRL-TGE 155 (167)
Q Consensus 85 l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~----~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-~~~ 155 (167)
|+|.+. |+|.|.++|+||+ ..|.. +.+. .. ...+.|.|.++..+|+ |.|+|+|+|.+ +++
T Consensus 3 i~~~v~---G~P~Pti~W~kng-~~l~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~YtC~A~N~~G~~~ 71 (79)
T cd05855 3 IPFTVK---GNPKPTLQWFHEG-AILNE------SEYICTKIHVINNTEYHGCLQLDNPTHLNN-GIYTLVAKNEYGEDE 71 (79)
T ss_pred EEEEEe---EeCCCceEEEECC-EECCC------CcceeeeeEeecccceEEEEEECCCCcccC-EEEEEEEEcCCcccc
Confidence 688888 5699999999998 56632 2221 11 1235899999999999 99999999998 333
Q ss_pred EEEe
Q psy12724 156 TRLS 159 (167)
Q Consensus 156 ~~l~ 159 (167)
..++
T Consensus 72 ~~~~ 75 (79)
T cd05855 72 KNVS 75 (79)
T ss_pred eEEE
Confidence 3433
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=3.5e-13 Score=88.37 Aligned_cols=61 Identities=23% Similarity=0.398 Sum_probs=47.4
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCc----CCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGP----EDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~----~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+. |+|.|.++|+||+ ..+.+. ...++.+ ..+|.|.|.++.. +|+ |.|+|.|.|..
T Consensus 1 i~l~C~~~---G~P~P~v~W~k~g-~~l~~~----~~~~~~~~~~~g~L~i~~~~~~~~~~d~-G~Y~C~A~N~~ 66 (77)
T cd05733 1 IVIKCEAK---GNPPPTFSWTRNG-THFDPE----KDPRVTMKPDSGTLVIDNMNGGRAEDYE-GEYQCYASNEL 66 (77)
T ss_pred CEEEeeCc---ccCCCeEEEEECC-eECCCC----CCCCEEEeCCCCEEEEeccCCCCCcCCC-EEEEEEEEcCC
Confidence 57999998 5699999999997 455321 2345544 3578999999864 798 99999999998
No 84
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.44 E-value=3.4e-13 Score=89.56 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=48.8
Q ss_pred EEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----------ccCCeEEEeecCcCCCCcceEEEeeecC-c
Q psy12724 85 LKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----------LPSGELHIRDVGPEDGYKSYQCRTKHRL-T 153 (167)
Q Consensus 85 l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----------~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-~ 153 (167)
|+|.+. |+|.|.++|+||+ ..+.+ +.++.. ...+.|.|.+++.+|+ |.|+|.|+|.+ .
T Consensus 3 i~~~v~---G~P~P~v~W~k~g-~~i~~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~YtC~A~N~~G~ 71 (81)
T cd04971 3 IPFTVR---GNPKPTLTWYHNG-AVLNE------SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNN-GNYTLVASNEYGQ 71 (81)
T ss_pred EEEEeE---eeCCCcEEEEECC-EECcC------CCceeEEEEeecccccccEEEEEECCCCcccC-eEEEEEEEeCCCC
Confidence 689988 4599999999997 56642 121111 1245799999999998 99999999998 4
Q ss_pred ceEEEeee
Q psy12724 154 GETRLSAT 161 (167)
Q Consensus 154 ~~~~l~~~ 161 (167)
.+..++++
T Consensus 72 ~~~~~~~~ 79 (81)
T cd04971 72 DSKSISAH 79 (81)
T ss_pred eeeEEEee
Confidence 45555554
No 85
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.43 E-value=4.3e-13 Score=87.91 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=51.0
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+..|+++.|.|.+.+ .|.|.++|+|++ ..+.+ .........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 5 ~~~~G~~v~L~C~~~g---~p~p~i~W~k~~-~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~ 71 (82)
T cd05856 5 ARPVGSSVRLKCVASG---NPRPDITWLKDN-KPLTP-----TEIGESRKKKWTLSLKNLKPEDS-GKYTCHVSNRA 71 (82)
T ss_pred eccCCCeEEEEEEeeE---eCCCcEEEEECC-cCCcC-----CccceecCceEEEEEccCChhhC-EEEEEEEEcCC
Confidence 3557999999999984 588999999997 34432 11112222346899999999998 99999999987
No 86
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.43 E-value=4.5e-13 Score=85.74 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=45.4
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.| .|.|.++|+|++. .+. .++.. ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 v~l~C~~~g---~P~p~v~W~k~~~-~~~-------~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~ 59 (71)
T cd05731 1 LLLECIAEG---LPTPEISWIKIGG-ELP-------ADRTKFENFNKTLKIDNVSEEDD-GEYRCTASNSL 59 (71)
T ss_pred CEEEEEeeE---ecCCeEEEEECCe-ECC-------CCceeEecCCCEEEECCCCHHHC-EEEEEEEEeCC
Confidence 479999984 5999999999973 442 12222 23356899999999998 99999999988
No 87
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=7.5e-13 Score=86.93 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=47.3
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCc----CCCCcceEEEeeecCc
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGP----EDGYKSYQCRTKHRLT 153 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~----~D~~G~Y~C~a~n~~~ 153 (167)
+.|.|.+. |+|.|.++|+||+ ..+.. ..+.++.+ ..+|.|.|.+++. .|+ |.|+|.|+|...
T Consensus 1 ~~l~C~~~---G~P~P~v~W~k~g-~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G 67 (77)
T cd05875 1 IIIECEAK---GNPVPTFQWTRNG-KFFNV----AKDPRVSMRRRSGTLVIDFSGGGRPEDYE-GEYQCFARNNLG 67 (77)
T ss_pred CEEEEecc---ccCCCEEEEEECC-EEccC----cCCCcEEEeCCCceEEEeccCCCCCCCCC-EEEEEEEEeccc
Confidence 47999998 5599999999997 44421 13455655 3678999998753 468 999999999983
No 88
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.41 E-value=1e-12 Score=86.24 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=46.7
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcC----CCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPE----DGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~----D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+. |+|.|.++|+||+ ..+.. ....++.+. .+|.|.|..+..+ |+ |.|+|.|.|..
T Consensus 1 ~~l~C~a~---G~P~P~i~W~k~g-~~l~~----~~~~~~~~~~~~g~l~i~~~~~~~~~~d~-G~Y~C~A~N~~ 66 (77)
T cd05874 1 IVIQCEAK---GKPPPSFSWTRNG-THFDI----DKDPKVTMKPNTGTLVINIMNGEKAEAYE-GVYQCTARNER 66 (77)
T ss_pred CEEEeeCc---ccCCCeEEEEECC-eECCC----cCCCCEEEeCCCceEEEeccccCCCCCCC-EEEEEEEEcCC
Confidence 47999998 5699999999997 45421 123445444 4789999988754 88 99999999987
No 89
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.40 E-value=1.7e-12 Score=88.65 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=55.6
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe-eeecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~-~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C 146 (167)
.++..+.+|++|.|+|.+.+ .|.|.+.|++.++..+... .....++|+.+. .+..|.|++++.+|+ |.|.|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~---~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQ---NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDE-GQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEec---CCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccC-EEEEE
Confidence 45678999999999999984 5889999987543222211 000124677653 234799999999999 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
.+.+..
T Consensus 80 ~~~t~~ 85 (95)
T cd07701 80 SLFTMP 85 (95)
T ss_pred EeEeec
Confidence 999853
No 90
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.39 E-value=2.2e-12 Score=90.21 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=53.6
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--c-----CCeEEEeecC-cCCCCcceEEEeee
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--P-----SGELHIRDVG-PEDGYKSYQCRTKH 150 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~-----~g~L~I~~v~-~~D~~G~Y~C~a~n 150 (167)
.|.++.|.|.+. |+|.|.++|+||+ ..+.. .+.||.+. . ++.|.|.++. .+|. |.|+|.|.|
T Consensus 22 ~g~~v~L~C~a~---G~P~p~i~W~k~g-~~l~~-----~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~-G~Y~C~A~N 91 (109)
T cd05773 22 GSSDANLVCQAQ---GVPRVQFRWAKNG-VPLDL-----GNPRYEETTEHTGTVHTSILTIINVSAALDY-ALFTCTAHN 91 (109)
T ss_pred CCCEEEEEEECc---ccCCCEEEEEECC-EECCC-----CCCeEEEEeeccCccceeEEEECcCCccCCC-EEEEEEEEe
Confidence 478999999998 4699999999997 55531 23455422 1 3579999997 6997 999999999
Q ss_pred cC---cceEEEee
Q psy12724 151 RL---TGETRLSA 160 (167)
Q Consensus 151 ~~---~~~~~l~~ 160 (167)
.+ +..+.|.+
T Consensus 92 ~~G~~~~~i~L~~ 104 (109)
T cd05773 92 SLGEDSLDIQLVS 104 (109)
T ss_pred CCccCcEEEEEEe
Confidence 98 44455554
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=2.5e-12 Score=85.50 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=53.3
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
++..+.+|++++|.|.+.+ +.|.|.+.|+|++. .+. . +. ...++.|.|.+++.+|+ |.|.|.|.|..
T Consensus 9 ~~~~v~~G~~v~L~C~~~~--~~~~~~i~W~~~~~-~~~-------~-~~-~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~ 75 (85)
T cd05754 9 RSQEVRPGADVSFICRAKS--KSPAYTLVWTRVGG-GLP-------S-RA-MDFNGILTIRNVQLSDA-GTYVCTGSNML 75 (85)
T ss_pred CceEEcCCCCEEEEEEcCC--CCCCcEEEEEECCC-cCC-------C-cc-cccCCEEEECCCCHHHC-EEEEEEEeccC
Confidence 4567889999999999864 24888999999873 331 1 11 23468999999999999 99999999987
No 92
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.35 E-value=2.6e-12 Score=86.62 Aligned_cols=65 Identities=20% Similarity=0.411 Sum_probs=50.5
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEEEeeecCc
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQCRTKHRLT 153 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C~a~n~~~ 153 (167)
.|+++.|.|.+. |+|.|.++|+|++ ..+... ...++.. .+|.|.|.++. .+|+ |.|+|.|+|...
T Consensus 18 ~~~~~~l~C~~~---g~p~p~i~W~k~~-~~l~~~----~~~~~~~-~~~~L~i~~~~~~~d~-G~Y~C~a~N~~G 83 (91)
T cd04967 18 DEGKVSLNCRAR---GSPPPTYRWLMNG-TEIDDE----PDSRYSL-VGGNLVISNPSKAKDA-GRYQCLASNIVG 83 (91)
T ss_pred CCCEEEEEEeee---EcCCCEEEEEECC-EECCCC----CCCCEEE-ECCEEEEecCCccCCC-EEEEEEEEcCCC
Confidence 456799999997 5699999999997 455211 2345543 57899999987 4998 999999999973
No 93
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=5.9e-12 Score=83.00 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=52.7
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
++...+.+|++++|.|.+.+. |. +.++|+||+ ..+. ..++.|.|.++ .+|+ |.|+|.|.|
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~---p~~~~~~W~kng-~~l~-------------~~~~~l~i~~~-~~ds-G~Y~C~a~~ 67 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNS---PEQNSTQWYHNG-KLLE-------------TTTNSYRIRAA-NNDS-GEYRCQTQG 67 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCC---CCCccEEEEECC-EEee-------------ccCCeEEEeec-ccCC-EEeEEECCC
Confidence 455688999999999999853 54 468999997 4442 13568999999 9999 999999999
Q ss_pred cC-cceEEEe
Q psy12724 151 RL-TGETRLS 159 (167)
Q Consensus 151 ~~-~~~~~l~ 159 (167)
.. +..++|+
T Consensus 68 ~~~S~~v~l~ 77 (78)
T cd05752 68 SSLSDPVHLE 77 (78)
T ss_pred CcCCCCEEEe
Confidence 75 4444443
No 94
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=7.4e-12 Score=83.97 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=52.4
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
...+.+|+++.|+|.+.+ |.+.+.|+|++ ..+.... ....++... .+.|.|.+++.+|+ |.|.|.|.|..
T Consensus 5 ~~~v~~g~~v~L~C~~~~----p~~~i~W~k~~-~~~~~~~--~~~~~~~~~-~~~L~I~~~~~~D~-G~Y~C~a~~~~ 74 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS----NLASVVWLFQG-GPLQRKE--EPEERLLVT-EDGLLIRSVSPADA-GVYTCQSVEHG 74 (89)
T ss_pred EEEEECCCcEEEEEeCCC----CCceEEEEECC-ccccccc--CcCceEEEc-CCCEEEccCCHHHC-EEEEEEEecCc
Confidence 456789999999999863 77789999997 3442210 012455554 45699999999999 99999999875
No 95
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.30 E-value=2.7e-11 Score=82.23 Aligned_cols=76 Identities=20% Similarity=0.379 Sum_probs=54.6
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe-eeecCCceEEEcc----CCeEEEeecCcCCCCcceEEE
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVLP----SGELHIRDVGPEDGYKSYQCR 147 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~-~~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C~ 147 (167)
++..+.+|++|.|.|.+.+ .|.+.+.|++.++..+... .....++||.+.. +..|.|++++.+|+ |.|.|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKN---NDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDE-GRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECC---CCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccC-EEEEEE
Confidence 4567899999999999974 4778899987543332211 0001246776632 34799999999999 999999
Q ss_pred eeecC
Q psy12724 148 TKHRL 152 (167)
Q Consensus 148 a~n~~ 152 (167)
+.+..
T Consensus 81 ~~~~~ 85 (95)
T cd05717 81 LYTMP 85 (95)
T ss_pred EecCC
Confidence 99865
No 96
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=1e-11 Score=80.81 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=46.2
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.+ +.|.|.++|+|++ ..+.... ....++.+.. .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 ~~L~C~a~~--~~p~~~~~W~~~g-~~i~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~a~N~~ 67 (76)
T cd05895 1 LVLRCETVS--EYPSLRFKWFKNG-KEIGAKN--KPDNKIKIRKKKKSSELQISKASLADN-GEYKCMVSSKL 67 (76)
T ss_pred CEEEEeccc--CCCCCceEEEECC-cccccCC--CCCceEEEEeCCcEEEEEECcCCcccC-EEEEEEEEeCC
Confidence 479999863 3488899999987 4553210 1123443332 35799999999999 99999999998
No 97
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.27 E-value=1.5e-11 Score=79.35 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=45.3
Q ss_pred EEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce-EEEc---cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 84 VLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK-YLVL---PSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 84 ~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r-~~~~---~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.|.|.+.+ +.|.|.++|+|++ ..+... ...+ +.+. ..+.|.|.+++.+|+ |.|+|.|.|.+
T Consensus 2 ~l~C~~~g--~~P~p~~~W~k~g-~~l~~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 66 (75)
T cd05750 2 VLKCEATS--EYPSLRFKWFKDG-KELNRK----NKPRNIKIRNKKKNSELQINKAKLADS-GEYTCVVENIL 66 (75)
T ss_pred EEEEEccC--CCCCceEEEEcCC-eecccc----CCcceEEEEecCceEEEEEccCCcccC-eEEEEEEEEcC
Confidence 68999985 2599999999987 555321 1111 1121 245799999999998 99999999998
No 98
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.25 E-value=1.9e-11 Score=81.15 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=46.6
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+++.|.|.+.+. .+|.|.++|.+++. .+.... ....+.... ..+.|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 Ge~~~L~C~~~g~-~~~~~~i~W~~~~~-~~~~~~--~~~~~~~~~~~~~~~s~L~I~~v~~~Ds-G~Y~C~a~n~~ 72 (84)
T cd05742 1 GETLVLNCTVLTE-LNEGVDFQWTYPGK-KRGRGK--SMVTRQSLSEATELSSTLTIPNATLKDS-GTYTCAASSGT 72 (84)
T ss_pred CCeEEEEEEEEeC-CCccEEEEEecCCc-ccCCce--EeecccccccceEEEEEEEECCCChhhC-EEEEEEEccCC
Confidence 7899999999742 22889999998763 221100 001111111 135799999999999 99999999987
No 99
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.25 E-value=5e-11 Score=80.77 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=50.0
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.+.+|++|.|+|... .|.|.++|+|++. ....... ..+.|+.. .++.|.|++++++|+ |.|+|.|.|..
T Consensus 6 ~~~~eG~~v~L~C~~~----~p~p~v~Wykq~~g~~~~~~~--~~~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~~~~ 76 (91)
T cd05871 6 VYGVENNSTFLECLPK----SPQASVKWLFQRGGDQRKEEV--KTEERLIH-TERGLLLRSLQRSDA-GVYTCTAVEHS 76 (91)
T ss_pred EEEecCCcEEEEEECC----CCCceEEEEEECCCCCccccc--cccccEEE-ecCeEEEeeCChhHC-EEEEEEEEccC
Confidence 3578999999999953 3888999998432 1111100 02356654 457799999999999 99999998643
No 100
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.22 E-value=7.4e-11 Score=72.08 Aligned_cols=62 Identities=27% Similarity=0.496 Sum_probs=48.0
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+|+++.|.|.+.+ .|.+.+.|+|++ ..+. ........++.|.|.+++.+|+ |.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~---~~~~~v~W~~~~-~~~~-------~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEG---DPVPNITWLKDG-KPLP-------ESNRLSASGSTLTIKSVSLEDS-GEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCcc---CCCCeEEEEECC-EECC-------CCCEEecCCcEEEEeeCCcccC-EEEEEEEecCC
Confidence 4889999999763 478889999987 3432 1222334567899999999998 99999999864
No 101
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.19 E-value=1e-10 Score=77.83 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=51.0
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
....+.+|++++|.|.+.. +.+.+.+.|+|++ ..+.. ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus 7 p~~~V~~G~~vtL~C~~~~--~~~~~~~~w~k~g-~~~~~-----------~~~~~~l~I~~~~~~ds-G~Y~C~~~~~~ 71 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWK--NKPVYKVTYYRDG-KAKKY-----------SHSNSNLSIPQATLSDS-GSYHCSGIIGS 71 (83)
T ss_pred CcceecCCCCEEEEeeCCC--CCcceEEEEEECC-eEccc-----------cCCCceEEECccCHHHC-EEEEEEEEeCC
Confidence 3456889999999999853 3467789999997 34321 11256899999999999 99999999987
No 102
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.16 E-value=2.8e-10 Score=74.65 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=49.8
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----ccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----LPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
.+..|+++.|.|.+.+ .|.|.++|+|++ ..+.. +.++.. .....|.|.++..+|+ |.|.|.|.|.
T Consensus 5 ~~~~G~~~~l~C~~~~---~p~~~v~W~k~~-~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~C~~~n~ 73 (85)
T cd05729 5 AVPAGSTVRLKCPASG---NPRPTITWLKDG-KPFKK------EHRIGGYKVRKKKWTLILESVVPSDS-GKYTCIVENK 73 (85)
T ss_pred EecCCCcEEEEEEcCC---CCCCeEEEEECC-EECcc------cCceeEEEccCcEEEEEEeECCcccC-EEEEEEEEEC
Confidence 4567999999999985 488899999997 44431 111111 1224699999999998 9999999998
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 74 ~ 74 (85)
T cd05729 74 Y 74 (85)
T ss_pred C
Confidence 7
No 103
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.14 E-value=2.5e-10 Score=77.91 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=50.0
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE---Ee----eeecCCceEEEc----cCC--eEEEeecCcCCCCc
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF---VD----MTESTDGKYLVL----PSG--ELHIRDVGPEDGYK 142 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~---~~----~~~~~~~r~~~~----~~g--~L~I~~v~~~D~~G 142 (167)
.+.+|++|+|+|.+. ++|.+.+.|++++...+. +. ......+|+... .+| .|.|++++.+|+ |
T Consensus 3 ~~~~G~~VtL~C~~s---~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDs-g 78 (94)
T cd07690 3 LGKKGDTAELPCTAS---QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDS-D 78 (94)
T ss_pred EeeCCCCEEEEEEeC---CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHC-E
Confidence 467899999999997 458899999977532211 00 000112233222 233 499999999999 9
Q ss_pred ceEEEeeecC
Q psy12724 143 SYQCRTKHRL 152 (167)
Q Consensus 143 ~Y~C~a~n~~ 152 (167)
.|.|.+.|+.
T Consensus 79 tY~C~v~~~~ 88 (94)
T cd07690 79 TYICEVEDKK 88 (94)
T ss_pred EEEEEECCcc
Confidence 9999999986
No 104
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.14 E-value=5.5e-10 Score=76.75 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=54.2
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEcc----CC---eEEEeecCcCC-CCcc
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLP----SG---ELHIRDVGPED-GYKS 143 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~----~g---~L~I~~v~~~D-~~G~ 143 (167)
..+.+.+|++|.|.|.+.+. |.| .|.|..++ ..|... ..+||.+.. +| .|.|.++..+| . |.
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~---P~P~~i~W~w~~-~~i~~~----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~-g~ 79 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGST---PPPDRIAWAWKE-NVLESG----TSERYTVERTSTGSGVLSTLTINNIMEADFQ-TH 79 (98)
T ss_pred ceEEEeCCCcEEEEEEEccC---CCCcEEEEEEcc-ccccCC----CCCCEEEEEEccCCCcEEEEEECCCccccCC-cE
Confidence 34678899999999999743 655 56888876 344321 256887753 23 69999998878 6 89
Q ss_pred eEEEeeecCc
Q psy12724 144 YQCRTKHRLT 153 (167)
Q Consensus 144 Y~C~a~n~~~ 153 (167)
|.|.|.|.+.
T Consensus 80 Y~C~a~N~~G 89 (98)
T cd05898 80 YNCTAWNSFG 89 (98)
T ss_pred EEEEEEeCCc
Confidence 9999999983
No 105
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.14 E-value=2.6e-10 Score=75.96 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=45.7
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|++++|.|.+.+ .|.|.++|.+++. ...... ....+..+.. ...|.|.+++.+|+ |.|.|.|+|..
T Consensus 1 Ge~~~l~C~~~~---~~~~~~~W~~~~~-~~~~~~--~~~~~~~~~~~~~~s~L~I~~~~~~Ds-G~Y~C~a~n~~ 69 (84)
T cd05861 1 GETITVNCIVQG---NEVVDFSWTYPGK-DIGKGI--PEVEEVKVPATTLRSTLTFPHATVEDS-GTYECAAHEST 69 (84)
T ss_pred CCcEEEEEEEEC---CCccEEEEEECCc-cCCCCc--eEEEEEecCCcEEEEEEEECCCCcCCC-EEEEEEEEECc
Confidence 789999999974 5889999998753 111000 0001111111 24799999999999 99999999975
No 106
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.13 E-value=1.6e-10 Score=77.37 Aligned_cols=66 Identities=27% Similarity=0.473 Sum_probs=53.2
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
++.++..|+++.|+|...+ +.+.++|++++ ..+. .+.|+....+| |.|.+++++|+ |.|+|.+.-.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s----~~A~v~W~~ng-~~l~------~~~r~~~~~~G-LlI~~~~~~ds-G~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS----NLASPVWLFNG-TPLN------AQFSYRVGTDG-LLILVTSPEHS-GTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCCCC----CCccEEEEECC-cccC------CCcceEEeCCC-CEEEECCHhhC-EEEEEEEecC
Confidence 3568899999999999864 56688999998 4553 35677777666 77999999999 9999998743
No 107
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.12 E-value=1.8e-10 Score=72.14 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=42.0
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CC----eEEEeecCcCCCCcceEEEe
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SG----ELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g----~L~I~~v~~~D~~G~Y~C~a 148 (167)
|+++.|.|.+.. +.|.+.++|.|++...... ....... .. .|.|.+++.+|+ |.|+|.|
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEG-------STTNRSTNSVSSTSRLTISNVTPEDS-GTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEE-------EEEEEEETTTEEEEEEEESSCTGGGT-EEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCc-------ceeEeecccceeeeEEEEccCCHHHC-EEEEEEC
Confidence 789999999911 4578899999998533221 1111111 22 299999999999 9999986
No 108
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.09 E-value=4.2e-10 Score=76.90 Aligned_cols=71 Identities=25% Similarity=0.369 Sum_probs=52.6
Q ss_pred eEEEeCCcEEEEeee-CCc-cCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeec
Q psy12724 75 EHVLKGNSAVLKCHI-PSF-VADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~-~~~-~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
+.+..|.+..|.|.- .++ ..++.|.++|+||+ .++.. ...++.... ++.|.|.++..+|+ |.|+|+|.|.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~-----~~~~~~~~~~~~~L~I~~v~~~D~-G~YtC~~~~~ 77 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDK-----DNEKFYSLKGSTYLHIIDVSLNDS-GYYTCKLQFT 77 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcC-----CCcceEecCCCCEEEEEEcChhhC-EEEEEEEEEe
Confidence 567789999999963 211 13467789999997 55531 234555533 45899999999999 9999999997
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 78 ~ 78 (95)
T cd05897 78 H 78 (95)
T ss_pred e
Confidence 6
No 109
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.07 E-value=1.8e-09 Score=73.81 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=54.9
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEE-eeeecCCceEEEcc-CC---eEEEeecCcCCCCcceEEE
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVLP-SG---ELHIRDVGPEDGYKSYQCR 147 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~-~~~~~~~~r~~~~~-~g---~L~I~~v~~~D~~G~Y~C~ 147 (167)
++.++.+|++|.|.|.+.+. ....+.|++-+...+.- ......+.||.... +| .|.|++++.+|+ |.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~---~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~-G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNN---DDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDE-GRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccC---CccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccC-EEEEEE
Confidence 56788999999999999854 35567999876322211 00012356777554 33 499999999999 999999
Q ss_pred eeecCc
Q psy12724 148 TKHRLT 153 (167)
Q Consensus 148 a~n~~~ 153 (167)
+.....
T Consensus 81 v~t~p~ 86 (95)
T cd05881 81 LYTDPP 86 (95)
T ss_pred EEcccC
Confidence 987653
No 110
>smart00409 IG Immunoglobulin.
Probab=99.06 E-value=2.4e-09 Score=68.79 Aligned_cols=69 Identities=28% Similarity=0.501 Sum_probs=53.0
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
...+..|+++.|.|.+.+. +.+.+.|+++++..+. ...++..... ..|.|.+++.+|+ |.|.|.+.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~------~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~ 72 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLA------ESGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATN 72 (86)
T ss_pred cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcC------CCCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEc
Confidence 3567899999999999853 6788999998324442 2344544443 5899999999999 999999997
Q ss_pred cC
Q psy12724 151 RL 152 (167)
Q Consensus 151 ~~ 152 (167)
..
T Consensus 73 ~~ 74 (86)
T smart00409 73 SS 74 (86)
T ss_pred CC
Confidence 65
No 111
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.06 E-value=2.4e-09 Score=68.79 Aligned_cols=69 Identities=28% Similarity=0.501 Sum_probs=53.0
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
...+..|+++.|.|.+.+. +.+.+.|+++++..+. ...++..... ..|.|.+++.+|+ |.|.|.+.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~------~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~ 72 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLA------ESGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATN 72 (86)
T ss_pred cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcC------CCCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEc
Confidence 3567899999999999853 6788999998324442 2344544443 5899999999999 999999997
Q ss_pred cC
Q psy12724 151 RL 152 (167)
Q Consensus 151 ~~ 152 (167)
..
T Consensus 73 ~~ 74 (86)
T smart00410 73 SS 74 (86)
T ss_pred CC
Confidence 65
No 112
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.05 E-value=1.6e-09 Score=74.90 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=58.3
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEeee---ecCCceEEEccC---C--eEEEeecCcCCCC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDMT---ESTDGKYLVLPS---G--ELHIRDVGPEDGY 141 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~~---~~~~~r~~~~~~---g--~L~I~~v~~~D~~ 141 (167)
...+.+|++|.|+|.+.+. +.+.+.|+|... .+ +..... +...+|+.+..+ + .|.|++++.+|+
T Consensus 7 ~v~~~~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds- 82 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTS---TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS- 82 (109)
T ss_pred ceEEcCCCCEEEEEEECCC---CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC-
Confidence 4578899999999999743 667889998531 11 111100 013467765432 2 699999999999
Q ss_pred cceEEEeeecCcceEEEeeeCCeee
Q psy12724 142 KSYQCRTKHRLTGETRLSATKGRLV 166 (167)
Q Consensus 142 G~Y~C~a~n~~~~~~~l~~~~~~~~ 166 (167)
|.|.|.+.+.......+.-.+++|.
T Consensus 83 G~Y~C~~~~~~~~~~~~~g~gt~l~ 107 (109)
T cd04983 83 AVYFCALSESGGTGKLTFGKGTRLT 107 (109)
T ss_pred EEEEEEEecCCCCcceEECCCEEEE
Confidence 9999999976432333344455654
No 113
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.03 E-value=2.4e-09 Score=74.45 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=56.6
Q ss_pred EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC----eeeEEeee--------ecCCceEEEccCCeEEEeecCcC
Q psy12724 71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG----EELFVDMT--------ESTDGKYLVLPSGELHIRDVGPE 138 (167)
Q Consensus 71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~----~~l~~~~~--------~~~~~r~~~~~~g~L~I~~v~~~ 138 (167)
.+.+..+.+|++|.|+|.-. ..+.-.++|+|+.. ..+..... +...+|..+.+||+|.|++++.+
T Consensus 4 e~~p~~~~~G~~V~L~v~~~---p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNL---PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK 80 (105)
T ss_pred eccCCcccCCCCEEEEecCC---CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence 34456788999999999754 12444889999732 12221110 01357888899999999999999
Q ss_pred CCCcceEEEeeecC
Q psy12724 139 DGYKSYQCRTKHRL 152 (167)
Q Consensus 139 D~~G~Y~C~a~n~~ 152 (167)
|+ |.|+|.+.|..
T Consensus 81 D~-G~Y~~~v~~~~ 93 (105)
T cd05774 81 DT-GFYTLQTITTN 93 (105)
T ss_pred cC-EEEEEEEEeCC
Confidence 99 99999999875
No 114
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.99 E-value=4.6e-09 Score=70.29 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=50.8
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----------eecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a 148 (167)
|++|+|+|.... .+...+.|+|++........ .+.-.+|+.+..++.|.|++++.+|+ |.|.|..
T Consensus 1 G~~VtL~c~~~~---~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~Ds-G~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLP---ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDS-GTYTLQI 76 (92)
T ss_pred CCcEEEEcccCC---CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhc-EEEEEEE
Confidence 789999999863 35668899997632110000 01124677787889999999999999 9999999
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.+..
T Consensus 77 ~~~~ 80 (92)
T cd05741 77 ISTN 80 (92)
T ss_pred EcCC
Confidence 8875
No 115
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=2.8e-09 Score=71.30 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=48.7
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----ccCCeEEEeecCcCCCCcceEEEeeecC---
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----LPSGELHIRDVGPEDGYKSYQCRTKHRL--- 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--- 152 (167)
|+++.|.|.+.+. .+|...+.|.+.+........ ....+... .....|.|.+++.+|+ |.|+|.|.|..
T Consensus 1 Ge~~~L~C~~~~~-~~~~~~~~W~~p~~~~~~~~~--~~~~~~~~~~~~~~~s~L~I~~~~~~Ds-G~Y~C~a~n~~~~~ 76 (86)
T cd05862 1 GEKLVLNCTARTE-LNVGIDFQWDYPGKKEQRAKS--VSENRRSLQEHTELSSTLTIENVTLSDL-GRYTCTASSGQMIA 76 (86)
T ss_pred CCcEEEEEEEEeC-CCCcEEEEEEcCCccccccee--cccccccccccceeeeEEEEecCCcccC-EEEEEEEeecceEe
Confidence 7899999999632 234567899887632211000 01111111 1235899999999999 99999999976
Q ss_pred cceEEEee
Q psy12724 153 TGETRLSA 160 (167)
Q Consensus 153 ~~~~~l~~ 160 (167)
...+.|.+
T Consensus 77 ~~~t~~~V 84 (86)
T cd05862 77 KNSTIVIV 84 (86)
T ss_pred cccEEEEE
Confidence 44445544
No 116
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=9.3e-09 Score=66.28 Aligned_cols=63 Identities=24% Similarity=0.476 Sum_probs=49.8
Q ss_pred ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
++...+.+|+++.|.|.+. ++|.+.+.|++++ ..+... .+.|.|.++..+|+ |.|+|.|.|.
T Consensus 6 ~~~~~v~~g~~~~l~C~~~---~~p~~~~~w~~~~-~~~~~~-------------~~~~~~~~~~~~~~-g~y~C~~~~~ 67 (80)
T PF13895_consen 6 SSPQSVEEGDSVTLTCSVS---GNPPPQVQWYKNG-SPINSS-------------QNGLFIPNVSPEDS-GNYTCRASNG 67 (80)
T ss_dssp EESSEEETTSEEEEEEEEE---SSSSSEEEEEETT-EEEEEE-------------SSEEEESSEEGGGT-EEEEEEEEET
T ss_pred ccceEEeCCCcEEEEEEEE---cccceeeeeeeee-eeeeee-------------eeeeeeeeeccccC-EEEEEEEEeC
Confidence 3446788999999999998 4577899999986 455321 11288899999998 9999999996
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 68 ~ 68 (80)
T PF13895_consen 68 S 68 (80)
T ss_dssp T
T ss_pred C
Confidence 5
No 117
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.93 E-value=6.5e-09 Score=71.10 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=57.1
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEee------eecCCceEEEccC---C--eEEEeecCcCCC
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDM------TESTDGKYLVLPS---G--ELHIRDVGPEDG 140 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~------~~~~~~r~~~~~~---g--~L~I~~v~~~D~ 140 (167)
.+.+|++|.|+|.+... .+...+.|+|... .. +.... .+...+|+.+..+ + .|.|++++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 46789999999998742 2456789998542 11 11110 0012356655432 2 799999999999
Q ss_pred CcceEEEeeecCcceEEEeeeCCeeeC
Q psy12724 141 YKSYQCRTKHRLTGETRLSATKGRLVI 167 (167)
Q Consensus 141 ~G~Y~C~a~n~~~~~~~l~~~~~~~~~ 167 (167)
|.|.|.+.+.........-.+++|.+
T Consensus 80 -G~Y~C~v~~~~~~~~~~~~~gt~l~v 105 (105)
T cd00099 80 -AVYYCAVSLSGGTYKLYFGQGTRLTV 105 (105)
T ss_pred -EEEEEEEecCCCceeeEECCCEEEeC
Confidence 99999999875422333444556653
No 118
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.92 E-value=3.6e-09 Score=70.03 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=48.7
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeec-CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES-TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~-~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+.|.|...+ +.|.+.|+|+||+ ..|.....+. .+..|. ..+.|.|.-....|. +.|+|.|.|..
T Consensus 1 ~~~L~C~s~~--skP~a~i~W~k~~-~~l~~~~~~~~~~~~~t--~~s~L~~~~~~~Ddg-~~~~C~A~n~a 66 (80)
T cd05885 1 EVELTCLSPR--SKPAATLRWYRDR-KELKGVISQQENGKTVS--VSNTIRFPVDRKDDG-AILSCEASHPA 66 (80)
T ss_pred CEEEEEeCCC--ccCCCeEEEEECC-EECCCCcccccCCceEE--EEEEEEEEeeeccCC-cEEEEEEEChh
Confidence 3789999986 6899999999998 5663211111 122333 346899999999998 99999999987
No 119
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.89 E-value=1.7e-08 Score=70.13 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=56.0
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e-eEEeee--------ecCCceEEEccC----CeEEEeecCcC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E-LFVDMT--------ESTDGKYLVLPS----GELHIRDVGPE 138 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~-l~~~~~--------~~~~~r~~~~~~----g~L~I~~v~~~ 138 (167)
...+.+|++|.|.|.+.+ +.+.+.|+|... . + +.-... +...+|+.+..+ -.|.|++++.+
T Consensus 7 ~~~v~~G~~v~l~C~~~~----~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS----GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred ceEEcCCCcEEEEEEECC----CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 457889999999999873 456789998641 1 1 110000 011356765432 26999999999
Q ss_pred CCCcceEEEeeecCcceEEEeeeCCeeeC
Q psy12724 139 DGYKSYQCRTKHRLTGETRLSATKGRLVI 167 (167)
Q Consensus 139 D~~G~Y~C~a~n~~~~~~~l~~~~~~~~~ 167 (167)
|+ |.|.|.+.+........--.+++|.|
T Consensus 83 Ds-g~Y~Ca~~~~~~~~~~~fg~gT~L~V 110 (110)
T cd05899 83 DS-AVYLCASSLGGGADEAYFGPGTRLTV 110 (110)
T ss_pred hC-EEEEEEeeCCCCccceEECCCEEEeC
Confidence 99 99999998753212222234555543
No 120
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.87 E-value=2.9e-08 Score=67.63 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=45.8
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee----------ecCCceEEEcc------CCeEEEeecCcCCCCcc
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT----------ESTDGKYLVLP------SGELHIRDVGPEDGYKS 143 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~----------~~~~~r~~~~~------~g~L~I~~v~~~D~~G~ 143 (167)
|++|.|+|...+....-...+.|+|.+...+..... +.-.+|+.+.. +..|.|.+++.+|+ |.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDE-GL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhC-EE
Confidence 789999999853211122367999865322211110 01124665432 24799999999999 99
Q ss_pred eEEEeeecC
Q psy12724 144 YQCRTKHRL 152 (167)
Q Consensus 144 Y~C~a~n~~ 152 (167)
|.|.+.|..
T Consensus 80 Y~C~v~~~~ 88 (100)
T cd05713 80 YTCFFQSDG 88 (100)
T ss_pred EEEEEecCC
Confidence 999999754
No 121
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.86 E-value=2.1e-08 Score=70.93 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=50.2
Q ss_pred CeEEEeCCcEEEEeeeCCcc-CCcceeEEEEeC-CCe----eeEEee-----e---ecCCceEEEc-----cCCeEEEee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFV-ADYVAVESWISD-QGE----ELFVDM-----T---ESTDGKYLVL-----PSGELHIRD 134 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~-~~~----~l~~~~-----~---~~~~~r~~~~-----~~g~L~I~~ 134 (167)
+..+..|++|.|+|...... ..+...++|.+. .+. .++... . +.-.+|.... .+.+|.|+|
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 35678999999999985431 124578999432 110 111110 0 0112355442 345799999
Q ss_pred cCcCCCCcceEEEeeecC
Q psy12724 135 VGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~ 152 (167)
++.+|. |.|+|.+.|.-
T Consensus 87 v~~sD~-G~Y~C~v~n~p 103 (116)
T cd05879 87 LDYTDN-GTFTCDVKNPP 103 (116)
T ss_pred CCcccC-EEEEEEEEcCC
Confidence 999999 99999999975
No 122
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.86 E-value=2.1e-08 Score=70.56 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=51.9
Q ss_pred eCCcEEEEeeeCCccCC--------c-ceeEEEEeCC--Cee-eEEee------eecCCceEEEcc------CCeEEEee
Q psy12724 79 KGNSAVLKCHIPSFVAD--------Y-VAVESWISDQ--GEE-LFVDM------TESTDGKYLVLP------SGELHIRD 134 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~--------p-~p~i~W~k~~--~~~-l~~~~------~~~~~~r~~~~~------~g~L~I~~ 134 (167)
.|++++|+|........ | .+.|.|+|.. ... +.-.. .+.-.+|+.+.. +..|.|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999998532111 1 4689999852 111 11111 011224676642 45899999
Q ss_pred cCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724 135 VGPEDGYKSYQCRTKHRL---TGETRLSAT 161 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~---~~~~~l~~~ 161 (167)
++.+|+ |.|.|...+.. +....|.+.
T Consensus 81 l~~sDs-G~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDS-GTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccC-EEEEEEEecCCCCceeEEEEEEE
Confidence 999999 99999999885 334444443
No 123
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.86 E-value=2.2e-08 Score=69.05 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=51.3
Q ss_pred eCCcEEEEeeeCCcc---CCcceeEEEEeCC-----CeeeEEee------eecCCceEEEc----cCCeEEEeecCcCCC
Q psy12724 79 KGNSAVLKCHIPSFV---ADYVAVESWISDQ-----GEELFVDM------TESTDGKYLVL----PSGELHIRDVGPEDG 140 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~---~~p~p~i~W~k~~-----~~~l~~~~------~~~~~~r~~~~----~~g~L~I~~v~~~D~ 140 (167)
.|++|+|+|...... ....+.|.|+|.. ...++-.. .....+|.... .+..|.|++++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999986421 0125689999862 11121110 00111233321 245799999999999
Q ss_pred CcceEEEeeecC---cceEEEeeeC
Q psy12724 141 YKSYQCRTKHRL---TGETRLSATK 162 (167)
Q Consensus 141 ~G~Y~C~a~n~~---~~~~~l~~~~ 162 (167)
|.|.|.+.+.. ...+.|.+.+
T Consensus 81 -G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 -GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred -EEEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999874 4455666543
No 124
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.85 E-value=2.4e-08 Score=65.73 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=43.3
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-------CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-------GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-------g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+.|.|.+.+ +.|.|.++|+|++ ..+... .....+.++ ..|.|......|. |.|+|.|.|..
T Consensus 1 ~~~L~C~v~g--~~P~~~v~W~~~g-~~l~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~~~-~~y~C~a~n~~ 69 (82)
T cd05759 1 PYNLTCRARG--AKPAAEIIWFRDG-EVLDGA-----TYSKELLKDGKRETTVSTLPITPSDHDTG-RTFTCRARNEA 69 (82)
T ss_pred CEEEEEEEeC--ccCCCEEEEEECC-EEccCc-----eeeeeEecCCCeEEEEEEEEEeCceecCC-CEEEEEEcCcc
Confidence 3689999986 2588899999987 555321 111112222 2588888888887 99999999976
No 125
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.84 E-value=1.3e-08 Score=80.00 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=50.8
Q ss_pred CeEEEeCCcEEEEeeeCCccC--------CcceeEEEEeCCCeeeEEeeeecC--------CceEEEccCCeEEEeecCc
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVA--------DYVAVESWISDQGEELFVDMTEST--------DGKYLVLPSGELHIRDVGP 137 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~--------~p~p~i~W~k~~~~~l~~~~~~~~--------~~r~~~~~~g~L~I~~v~~ 137 (167)
...+.+|++|.|+|.+.++.. ...+.+.|+|++...+.... +. ..++ ...++.|.|.+++.
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~--~~~~~~~~i~~~~~-~~r~~~L~I~~v~~ 107 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDS--GARTKIKKITHNEI-GDRSENLWIGNVIN 107 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcC--CCccccccccccce-ecCCCeEEECCCCh
Confidence 356789999999999864310 13458899998732111110 00 0111 12367999999999
Q ss_pred CCCCcceEEEeeecC
Q psy12724 138 EDGYKSYQCRTKHRL 152 (167)
Q Consensus 138 ~D~~G~Y~C~a~n~~ 152 (167)
+|+ |.|+|.|.|..
T Consensus 108 ~Ds-G~Y~C~a~N~~ 121 (227)
T PHA02826 108 IDE-GIYICTISSGN 121 (227)
T ss_pred HHC-EEEEEEEEECC
Confidence 999 99999999976
No 126
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.83 E-value=1.9e-08 Score=68.73 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=50.0
Q ss_pred EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----e------ecCCceEEEccC-CeEEEeecCcCCCCcceEE
Q psy12724 78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----T------ESTDGKYLVLPS-GELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~------~~~~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C 146 (167)
..|++|+|+|..+. +.....+.|+|.....+.... . +.-.+|+.+..+ ++|.|++++.+|+ |.|.|
T Consensus 2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~Ds-G~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDA-GSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHC-EEEEE
Confidence 47999999998863 135678899997522222110 0 011245666554 7899999999999 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
...+..
T Consensus 79 ~v~~~~ 84 (97)
T cd05775 79 EINTKN 84 (97)
T ss_pred EEEcCC
Confidence 998765
No 127
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.83 E-value=1.8e-08 Score=69.65 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=49.7
Q ss_pred eEEEeCCcEEEEeee-CCcc-------CCcceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724 75 EHVLKGNSAVLKCHI-PSFV-------ADYVAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~-~~~~-------~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~ 145 (167)
..+.+|+.+.|.|.. .++. .++...++|+|++. .+.... .+..+.|. ...++.|.|.++..+|+ |.|+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~-~~~~~~~~~~~~~Ri-~~~~~~Lwf~Pa~~eDS-G~Y~ 86 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSG-DGEEPIEIIFDGVRM-SKEEDSIWFRPAELQDS-GLYT 86 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCC-CCCCCCcccccceeE-EEeCCEEEEEeCChhhC-eEEE
Confidence 467899999999986 1110 12333689999962 222110 00011233 34577899999999999 9999
Q ss_pred EEeeecC
Q psy12724 146 CRTKHRL 152 (167)
Q Consensus 146 C~a~n~~ 152 (167)
|++.|.-
T Consensus 87 C~~rN~t 93 (104)
T cd05896 87 CVLRNST 93 (104)
T ss_pred EEECCCC
Confidence 9999986
No 128
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.82 E-value=3.6e-08 Score=67.93 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=51.4
Q ss_pred eCCcEEEEeeeCCcc---CCcceeEEEEeCCCe-----eeEEee------eecCCceEEEcc----CCeEEEeecCcCCC
Q psy12724 79 KGNSAVLKCHIPSFV---ADYVAVESWISDQGE-----ELFVDM------TESTDGKYLVLP----SGELHIRDVGPEDG 140 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~---~~p~p~i~W~k~~~~-----~l~~~~------~~~~~~r~~~~~----~g~L~I~~v~~~D~ 140 (167)
.|++|+|+|..+... +.....|.|+|.+.. .++-.. .+.-.+|+.+.. +..|.|++++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999875320 123457899986411 111000 011135666542 34799999999999
Q ss_pred CcceEEEeeecC---cceEEEeee
Q psy12724 141 YKSYQCRTKHRL---TGETRLSAT 161 (167)
Q Consensus 141 ~G~Y~C~a~n~~---~~~~~l~~~ 161 (167)
|.|.|.+.+.. ...+.|.++
T Consensus 81 -G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 -GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred -EEEEEEEEecccceEEEEEEEEE
Confidence 99999999876 334455554
No 129
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.77 E-value=9.8e-09 Score=69.26 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=47.1
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
..|..|++|+|.|... .+.....|+|++. ... . .........+.|.|.+|+.+|+ |.|+|.+.|.
T Consensus 11 ~vV~~G~~VtL~C~~~----~~~~~f~l~k~g~-~~~-~-----~~~~~~~~~~~f~i~~v~~~~~-G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP----YGAVEYRLYREGS-TFA-V-----KKPPEPQNKAKFFIPSMKREHA-GRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC----CCCCEEEEEECCC-Ccc-c-----cccCCCceeEEEEccCCChhHC-EEEEEEEECC
Confidence 4678999999999985 3666789999973 221 0 0000011245799999999999 9999999986
No 130
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.76 E-value=7.5e-08 Score=67.33 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=52.0
Q ss_pred eCCcEEEEeeeCCccCC-------cceeEEEEeCC-Cee--eEEee------eecCCceEEEc------cCCeEEEeecC
Q psy12724 79 KGNSAVLKCHIPSFVAD-------YVAVESWISDQ-GEE--LFVDM------TESTDGKYLVL------PSGELHIRDVG 136 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~-------p~p~i~W~k~~-~~~--l~~~~------~~~~~~r~~~~------~~g~L~I~~v~ 136 (167)
.|++|+|+|..+..... ....|.|+|.. +.. +.-.. .+.-.+|+.+. .+..|.|+|++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48999999998532111 13568999852 111 11100 11123576653 23479999999
Q ss_pred cCCCCcceEEEeeecC---cceEEEeeeC
Q psy12724 137 PEDGYKSYQCRTKHRL---TGETRLSATK 162 (167)
Q Consensus 137 ~~D~~G~Y~C~a~n~~---~~~~~l~~~~ 162 (167)
.+|+ |.|.|.+.... ..++.|.+.+
T Consensus 81 ~sD~-G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDS-GVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhC-EEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999 99999998764 3455666544
No 131
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.75 E-value=4e-08 Score=62.29 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=43.5
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
+..+..+.|.|.+.+. .|.+.++|+ +. ..... ...+.....++.|.|+++..+|. |.|+|+|+|
T Consensus 12 ~~~~~~~~l~C~~~~~--~~~~~~~W~-~~-~~~~~-----~~~~~~~~~~~~L~i~~v~~~~~-g~y~C~a~N 75 (75)
T PF13927_consen 12 VTSGGSVTLTCSAEGG--PPPPSISWY-DS-NPSFN-----SNSRGSSSSNSTLTISNVTRSDN-GTYTCIASN 75 (75)
T ss_dssp EETTEEEEEEEEESSE--ESSEEEEEE-TE-EEEEE-----EEEEEEEEEEEEEEESSCCGGGT-EEEEEEEEE
T ss_pred EeeceeEEEEEEEccc--cCCeEEEEE-ec-CCcee-----eeeeeccceeeEEEEccCCHHhC-cEEEEEEEC
Confidence 3333449999999864 228899999 21 11111 12223333467899999999998 999999998
No 132
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.75 E-value=6.2e-08 Score=65.58 Aligned_cols=70 Identities=21% Similarity=0.399 Sum_probs=44.3
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCCe--e-e--EEee-----eecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQGE--E-L--FVDM-----TESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~--~-l--~~~~-----~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C 146 (167)
++|.|+|......+.....|.|+|.... . + .... .+...+|..+. .+..|.|++++.+|+ |.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDE-GNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccC-EEEEE
Confidence 4799999986431123557999996531 1 1 1000 00113444443 246899999999999 99999
Q ss_pred Eeeec
Q psy12724 147 RTKHR 151 (167)
Q Consensus 147 ~a~n~ 151 (167)
.+.+.
T Consensus 80 ~v~~~ 84 (98)
T cd05718 80 EFATF 84 (98)
T ss_pred EEEeC
Confidence 98753
No 133
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.71 E-value=1.1e-07 Score=66.88 Aligned_cols=86 Identities=26% Similarity=0.419 Sum_probs=52.0
Q ss_pred cCeEEEeCCcEEEEeeeCCccCC-cceeEEEEeC---CCee--eEEee---eecCC----ceEEEc-----cCCeEEEee
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVAD-YVAVESWISD---QGEE--LFVDM---TESTD----GKYLVL-----PSGELHIRD 134 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~---~~~~--l~~~~---~~~~~----~r~~~~-----~~g~L~I~~ 134 (167)
....+.+|++|.|+|........ ....|.|++. ++.. ++... ..... +|+... .+..|+|++
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 34578899999999987432111 1346899641 2221 21110 00011 333322 244799999
Q ss_pred cCcCCCCcceEEEeeecC-----cceEEEe
Q psy12724 135 VGPEDGYKSYQCRTKHRL-----TGETRLS 159 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~-----~~~~~l~ 159 (167)
++.+|+ |.|.|.+.|.. .++++|.
T Consensus 86 v~~~D~-G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 86 LQPTDN-GTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred CChhhC-EEEEEEEEeCCCCCCCccEEEEe
Confidence 999999 99999999865 3566654
No 134
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.71 E-value=9.2e-08 Score=66.02 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=49.6
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e--eEEee---eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E--LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGYKS 143 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~--l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~ 143 (167)
...+.+|++|.|.|.+.+.. ....+.|+|... . + +.... .....+|+....++ .|.|++++.+|+ |.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~--~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds-g~ 85 (106)
T cd04980 9 TLSVSPGESATISCKASQSV--SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA-AV 85 (106)
T ss_pred cEEECCCCCEEEEEEECCCC--CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC-EE
Confidence 45778999999999986431 145689997531 1 1 11100 00112467654333 599999999999 99
Q ss_pred eEEEeeec
Q psy12724 144 YQCRTKHR 151 (167)
Q Consensus 144 Y~C~a~n~ 151 (167)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99999764
No 135
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.69 E-value=3.9e-07 Score=64.01 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=48.2
Q ss_pred CeEEEeCCcEEEEeeeCCccC-CcceeEEEEeCCC-----eeeEEee---e-ecCC----ceEEEcc-----CCeEEEee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQG-----EELFVDM---T-ESTD----GKYLVLP-----SGELHIRD 134 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~~-----~~l~~~~---~-~~~~----~r~~~~~-----~g~L~I~~ 134 (167)
...+.+|++|+|+|..+.... .....+.|++... ..+.... . .... +|+.+.. +..|.|++
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 457789999999998853211 1235689976321 1121110 0 0012 3333322 24699999
Q ss_pred cCcCCCCcceEEEeeecC
Q psy12724 135 VGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~ 152 (167)
++.+|+ |.|.|.+.|.-
T Consensus 87 v~~~D~-G~Y~C~v~~~~ 103 (116)
T cd05715 87 LQFTDN-GTYTCDVKNPP 103 (116)
T ss_pred CCcccC-EEEEEEEEeCC
Confidence 999999 99999999864
No 136
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.67 E-value=1.7e-07 Score=65.57 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=50.2
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee--------ecCCceEEEccC-----CeEEEeecCc
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT--------ESTDGKYLVLPS-----GELHIRDVGP 137 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~--------~~~~~r~~~~~~-----g~L~I~~v~~ 137 (167)
..+.+|++|.|.|.+.+. ..+.+.+.|+|.. ..+ +..... +...+|+.+..+ -.|.|.+++.
T Consensus 8 ~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 8 ITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 466789999999998642 1366789999852 111 111000 012467766533 2699999999
Q ss_pred CCCCcceEEEeeec
Q psy12724 138 EDGYKSYQCRTKHR 151 (167)
Q Consensus 138 ~D~~G~Y~C~a~n~ 151 (167)
+|+ |.|.|.+...
T Consensus 87 ~Ds-g~Y~C~~~~~ 99 (116)
T cd04982 87 EDS-ATYYCAYWES 99 (116)
T ss_pred HHC-EEEEEEEecC
Confidence 999 9999999754
No 137
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.63 E-value=2.8e-07 Score=62.73 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=48.5
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCe---eeEEee-------eecCCceEEEc----cCCeEEEeecCcCCCCcceE
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGE---ELFVDM-------TESTDGKYLVL----PSGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~---~l~~~~-------~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~ 145 (167)
|++|+|+|.... ....-.+.|+|..+. .+.... .+.-.+|+.+. .+..|.|+|++.+|+ |.|.
T Consensus 1 G~~vtL~C~~~~--~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~-G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTL--PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDE-GCYK 77 (97)
T ss_pred CCcEEEEEEeCC--CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeee-EEEE
Confidence 789999998753 122236899985421 111110 00112344442 244799999999999 9999
Q ss_pred EEeeecC----cceEEEee
Q psy12724 146 CRTKHRL----TGETRLSA 160 (167)
Q Consensus 146 C~a~n~~----~~~~~l~~ 160 (167)
|...+.- ++.+.|++
T Consensus 78 C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCCCCCeeeEEEEEE
Confidence 9987644 55666654
No 138
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=2.1e-07 Score=63.34 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=48.7
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEeee---ecCCceEEEccCC---eEEEeecCcCCCCcceE
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~ 145 (167)
.|.+|++|.|.|...+.. .....+.|+|... .+ +..... +...+|+.+..++ .|.|++++.+|+ |.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~-~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGN-ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDE-ADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCC-cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhC-EEEE
Confidence 467899999999986421 1345689987542 11 111110 0113477765443 599999999999 9999
Q ss_pred EEeeec
Q psy12724 146 CRTKHR 151 (167)
Q Consensus 146 C~a~n~ 151 (167)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998764
No 139
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.61 E-value=5.9e-08 Score=64.28 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=42.4
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCCceE-------EEeeeEEEecCe
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQDFV-------VSQSYTVNIMDE 75 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~~~v-------~~g~y~c~~~~~ 75 (167)
|..+|+++.|.+|+++.|.|.|.|.|.+ ..|+|.|++. .+.. +..... ..|.|+|.+.|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P--~~I~W~k~g~-~l~~~~~~~~s~L~i~~~~d~g~Y~C~A~N~ 69 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEP--VEILWWQGGS-PLGDPPAPSPSVLNVPGLNETSKFSCEAHNA 69 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCC--eEEEEEECCE-ECCCCCCCCCCEEEEccccCCeEEEEEEEec
Confidence 5678999999999999999999998853 1599999954 3422 111111 156777777664
No 140
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.60 E-value=4.1e-07 Score=62.26 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=48.9
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCC---eeeEEeee--------ecCCceEEEc----cCCeEEEeecCcCCCCcceE
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQG---EELFVDMT--------ESTDGKYLVL----PSGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~---~~l~~~~~--------~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~ 145 (167)
.+|+|+|.... ......++|.|... ..+. .+. +.-.+|..+. .+++|.|+|++.+|+ |.|+
T Consensus 1 ~~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia-~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~-G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQV--NETITQSSWEKIHGKGSVTLA-VHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDI-GVYI 76 (96)
T ss_pred CCEEEEEEecC--CCcEEEEEEEEcCCCCcEEEE-EEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcccc-EEEE
Confidence 36899999863 23566899988532 1221 110 0112455542 367899999999999 9999
Q ss_pred EEeeecC----cceEEEee
Q psy12724 146 CRTKHRL----TGETRLSA 160 (167)
Q Consensus 146 C~a~n~~----~~~~~l~~ 160 (167)
|...+.- .+.+.|++
T Consensus 77 C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 77 CKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEEeCCCCCeeEEEEEEE
Confidence 9987754 44555544
No 141
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.57 E-value=3.3e-07 Score=61.34 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=45.2
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------CCc-eE------EEeeeEEEecCe
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------NQD-FV------VSQSYTVNIMDE 75 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------~~~-~v------~~g~y~c~~~~~ 75 (167)
+.|.+.+.+..+.+|+++.|.|.+.|.|.+ .++|+|++.. +... +.. .+ ..|.|+|.+.|.
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P---~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVP---VIRWRKILEP-MPATAEISMSGAVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCC---EEEEEECCcC-CCCCCEEecCCCEEEECcCChhhCEEEEEEEEcC
Confidence 467889999999999999999999998864 7999998542 3211 111 11 268888888764
No 142
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.57 E-value=7.8e-07 Score=61.00 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=43.8
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCCe----eeEE-ee------eecCCceEEEc-----cCCeEEEeecCcCCCCcce
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQGE----ELFV-DM------TESTDGKYLVL-----PSGELHIRDVGPEDGYKSY 144 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~-~~------~~~~~~r~~~~-----~~g~L~I~~v~~~D~~G~Y 144 (167)
.+|+|+|......+.....+.|+|.... .+.- .. .++-.+|..+. .++.|.|+|++.+|+ |.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~-GtY 79 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADE-GKY 79 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccc-eEE
Confidence 4799999985321222458899984311 1110 00 01111343333 256899999999999 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
.|.+.+.-
T Consensus 80 ~C~v~~~p 87 (100)
T cd05888 80 KCRVITFP 87 (100)
T ss_pred EEEEEeCC
Confidence 99998843
No 143
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.56 E-value=3.7e-07 Score=62.43 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=50.6
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEee--------eecCCceEEEccCC-----eEEEeecC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDM--------TESTDGKYLVLPSG-----ELHIRDVG 136 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~ 136 (167)
...+.+|++|.|+|... . ......+.|++.... .+.... .+...+|+.+..++ .|.|.|++
T Consensus 10 ~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp EEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred eEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 35678999999999987 2 235668899985421 122000 01123455544433 59999999
Q ss_pred cCCCCcceEEEeeec
Q psy12724 137 PEDGYKSYQCRTKHR 151 (167)
Q Consensus 137 ~~D~~G~Y~C~a~n~ 151 (167)
.+|+ |.|.|.....
T Consensus 88 ~~Ds-G~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDS-GTYFCQVSTS 101 (114)
T ss_dssp GGGE-EEEEEEEEES
T ss_pred cCcC-EEEEEEEEEC
Confidence 9999 9999999886
No 144
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.55 E-value=3.9e-07 Score=63.87 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=51.2
Q ss_pred eCCcEEEEeeeCCcc----CCcceeEEEEeCC----Cee--eEE------eeeecCCceEEEcc------CCeEEEeecC
Q psy12724 79 KGNSAVLKCHIPSFV----ADYVAVESWISDQ----GEE--LFV------DMTESTDGKYLVLP------SGELHIRDVG 136 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~----~~p~p~i~W~k~~----~~~--l~~------~~~~~~~~r~~~~~------~g~L~I~~v~ 136 (167)
.|++|+|+|...-.. ....+.|.|.|.. ... ++- ...+.-.+|..+.. +.+|.|+|++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 488999999953110 1124789999851 111 110 01122346766643 3479999999
Q ss_pred cCCCCcceEEEeeecC---cceEEEeee
Q psy12724 137 PEDGYKSYQCRTKHRL---TGETRLSAT 161 (167)
Q Consensus 137 ~~D~~G~Y~C~a~n~~---~~~~~l~~~ 161 (167)
.+|+ |.|.|...... .....|.+.
T Consensus 81 ~~D~-G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDS-GTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHC-EEEEEEEEECCcccEEEEEEEEE
Confidence 9999 99999999865 334455554
No 145
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.52 E-value=2.7e-07 Score=63.02 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=43.1
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc----------e-E--------EEeeeEEEecC
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD----------F-V--------VSQSYTVNIMD 74 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~----------~-v--------~~g~y~c~~~~ 74 (167)
...|.+..+..|+++.|.|.+.+.|.+ |.+.|++.+++.+..+..+ . + .+|.|+|.+.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~--p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKD--KDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCC--CEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 457788899999999999999998753 4899998656544332111 0 1 26888888876
Q ss_pred e
Q psy12724 75 E 75 (167)
Q Consensus 75 ~ 75 (167)
.
T Consensus 82 ~ 82 (96)
T cd05865 82 E 82 (96)
T ss_pred C
Confidence 4
No 146
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.51 E-value=1e-06 Score=60.56 Aligned_cols=79 Identities=13% Similarity=0.239 Sum_probs=47.7
Q ss_pred CcEEEEeeeCCcc-CCcceeEEEEeCC--Ce-ee--EEe-----eeecCCceEEEcc----CCeEEEeecCcCCCCcceE
Q psy12724 81 NSAVLKCHIPSFV-ADYVAVESWISDQ--GE-EL--FVD-----MTESTDGKYLVLP----SGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 81 ~~a~l~C~~~~~~-~~p~p~i~W~k~~--~~-~l--~~~-----~~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~ 145 (167)
.+|.|+|...... ....-.++|.|.. .. .+ +.. ..+.-.+|..... +++|.|+|++.+|+ |.|+
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~-G~Y~ 79 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDE-GVYI 79 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccC-EEEE
Confidence 3689999986310 1112268998842 11 22 110 0011235555442 47899999999999 9999
Q ss_pred EEeeecC----cceEEEee
Q psy12724 146 CRTKHRL----TGETRLSA 160 (167)
Q Consensus 146 C~a~n~~----~~~~~l~~ 160 (167)
|...|.- .+.+.|+|
T Consensus 80 C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 80 CEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEeCCCCCeEEEEEEEE
Confidence 9999943 44555554
No 147
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.47 E-value=5.1e-07 Score=61.73 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ce-E--------EEeeeEEEec
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DF-V--------VSQSYTVNIM 73 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~-v--------~~g~y~c~~~ 73 (167)
+.|...+++..+..|+++.|.|.+.|.|.+ .+.|+|++. .+..+.. .. + .+|.|+|.+.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p---~v~W~kdg~-~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI---TCTWMKFRK-QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCC---ceEEEECCE-EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence 357788999999999999999999988764 799999853 4432211 11 1 2799999997
Q ss_pred CeE
Q psy12724 74 DEH 76 (167)
Q Consensus 74 ~~~ 76 (167)
|..
T Consensus 77 N~~ 79 (98)
T cd05762 77 NKL 79 (98)
T ss_pred cCC
Confidence 753
No 148
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.47 E-value=1.3e-06 Score=59.20 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=49.8
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee---eEEee---eecCCceEEEcc---CC--eEEEeecCcCCCCcce
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE---LFVDM---TESTDGKYLVLP---SG--ELHIRDVGPEDGYKSY 144 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~---l~~~~---~~~~~~r~~~~~---~g--~L~I~~v~~~D~~G~Y 144 (167)
.+.+|++|.|+|..... .....+.|+|..... +.-.. .+...+|+.+.. ++ .|.|++++.+|+ |.|
T Consensus 3 ~~~~G~~vtl~C~~~~~--~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPK--NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDA-GWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCC--CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHC-EEE
Confidence 57799999999998642 245567999864211 11000 011245676542 23 699999999999 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
.|.+.+..
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99998765
No 149
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.47 E-value=1.2e-06 Score=60.41 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEcc------CCeEEEeecCcCCCCcceEEE
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLP------SGELHIRDVGPEDGYKSYQCR 147 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~------~g~L~I~~v~~~D~~G~Y~C~ 147 (167)
+.|.+|+++.|.|.+.++ |+|. +.|.+++ ..+... ....+.... ...|.+..++.+|+ |.|+|.
T Consensus 13 ~~v~~gE~~~L~V~ieAY---P~p~~~~W~~~~-~~l~~~----~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~-G~YTf~ 83 (101)
T cd05860 13 IFVNAGENLDLIVEYEAY---PKPEHQQWIYMN-RTLTNT----SDHYVKSRNESNNRYVSELHLTRLKGTEG-GTYTFL 83 (101)
T ss_pred EEEECCCCEEEEEEEEeC---CCCeeeEEEcCC-cccCcc----ccceeEEeccCceEEEEEEEEeecChhhC-cEEEEE
Confidence 467899999999999987 8887 8999986 333211 111111111 13699999999999 999999
Q ss_pred eeecC
Q psy12724 148 TKHRL 152 (167)
Q Consensus 148 a~n~~ 152 (167)
|.|..
T Consensus 84 a~N~~ 88 (101)
T cd05860 84 VSNSD 88 (101)
T ss_pred EECCC
Confidence 99987
No 150
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.45 E-value=9.5e-07 Score=59.30 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=33.9
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|...+.+..+.+|+++.|.|.+.+.|.+ .+.|+|++.
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p---~i~W~k~g~ 40 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTP---TIQWLKNGQ 40 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCC---EEEEEECCE
Confidence 457788999999999999999999998764 799999853
No 151
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.42 E-value=2.4e-06 Score=59.77 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=50.2
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee---eEEe---eeecCCceEEEcc---CC--eEEEeecCcCCC
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE---LFVD---MTESTDGKYLVLP---SG--ELHIRDVGPEDG 140 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~---l~~~---~~~~~~~r~~~~~---~g--~L~I~~v~~~D~ 140 (167)
....+.+|++|.|+|..... .....+.|+|... .. +... ..+...+|+.+.. ++ .|.|.+++.+|+
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~--~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETS--WTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred CceEEcCCCCEEEEEEEeCC--CCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 34567899999999998632 1345789998421 11 1110 0011246787642 22 699999999999
Q ss_pred CcceEEEeeec
Q psy12724 141 YKSYQCRTKHR 151 (167)
Q Consensus 141 ~G~Y~C~a~n~ 151 (167)
|.|.|.+.+.
T Consensus 85 -g~Y~C~~~~~ 94 (116)
T cd07706 85 -AKYFCALSTL 94 (116)
T ss_pred -EEEEEEEECC
Confidence 9999999853
No 152
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.42 E-value=2.8e-06 Score=59.95 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=48.7
Q ss_pred cCeEEEeCCcEEEEeeeCCcc--CC-cceeEEEEeCCCe----e-eEEee-----eecCCceEEEcc---C--CeEEEee
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFV--AD-YVAVESWISDQGE----E-LFVDM-----TESTDGKYLVLP---S--GELHIRD 134 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~--~~-p~p~i~W~k~~~~----~-l~~~~-----~~~~~~r~~~~~---~--g~L~I~~ 134 (167)
+...+.+|++|+|+|..+... .. ....+.|+|.... . +.-.. .+.-.+|+.... . ..|+|++
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 345788999999999764210 01 1245899986421 1 11000 011235776632 2 2699999
Q ss_pred cCcCCCCcceEEEeeec
Q psy12724 135 VGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~ 151 (167)
++.+|+ |.|.|.....
T Consensus 87 l~~~Ds-g~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDS-GKYFFRVELG 102 (119)
T ss_pred CChhhC-eEEEEEEEcC
Confidence 999999 9999988654
No 153
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.41 E-value=3.2e-06 Score=59.81 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=50.5
Q ss_pred eCCcEEEEeeeCCccC--------CcceeEEEEeCC---------CeeeEEee------eecCCceEEEc------cCCe
Q psy12724 79 KGNSAVLKCHIPSFVA--------DYVAVESWISDQ---------GEELFVDM------TESTDGKYLVL------PSGE 129 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~--------~p~p~i~W~k~~---------~~~l~~~~------~~~~~~r~~~~------~~g~ 129 (167)
.|++|+|+|...-... .....|.|.|-. ...++-.. .+.-.+|..+. .+.+
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as 80 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS 80 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence 3789999999752211 123489998731 01121110 01223565553 2458
Q ss_pred EEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724 130 LHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT 161 (167)
Q Consensus 130 L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~ 161 (167)
|.|++++.+|+ |.|.|...+.. ...+.|.+.
T Consensus 81 L~i~~v~~sD~-G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDA-GVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccC-EEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999 99999999876 344455554
No 154
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.40 E-value=7.4e-07 Score=60.19 Aligned_cols=38 Identities=13% Similarity=0.446 Sum_probs=33.4
Q ss_pred ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+|..+|++..+.+|+++.|.|.+.+.|. |.+.|+|++.
T Consensus 1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~---p~i~W~k~g~ 38 (95)
T cd05722 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPP---PKIEWKKDGV 38 (95)
T ss_pred CcEECCCCeEEcCCCCEEEeeecccCCC---CEEEEEECCe
Confidence 4788999999999999999999999874 5899999753
No 155
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.38 E-value=2.2e-06 Score=56.21 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=41.6
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce------EEEeeeEEEecCe
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF------VVSQSYTVNIMDE 75 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~------v~~g~y~c~~~~~ 75 (167)
+..|+...+.+|+++.|.|.+.+.+.+ +.+.|+|++. .+..++... -.+|.|+|.+.+.
T Consensus 4 ~~~P~~~~v~~G~~V~L~C~~~~~p~~--~~~~W~kng~-~l~~~~~~l~i~~~~~dsG~Y~C~a~~~ 68 (78)
T cd05752 4 SLDPPWTTIFQGEKVTLTCNGFNSPEQ--NSTQWYHNGK-LLETTTNSYRIRAANNDSGEYRCQTQGS 68 (78)
T ss_pred EeCCCCeEeeCCCCEEEEEeCCCCCCC--ccEEEEECCE-EeeccCCeEEEeecccCCEEeEEECCCC
Confidence 467888999999999999999987643 3589999853 442222211 1268888887653
No 156
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.37 E-value=1.4e-06 Score=57.71 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=35.8
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI 57 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~ 57 (167)
|.|...+.+..+.+|+++.|.|.+.+.|. +.+.|.++ +..+..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~---~~v~W~~~-~~~l~~ 43 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPP---PTVTWYKN-GRPLTS 43 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSS---SEEEEEET-TEEEES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCC---Cccccccc-ccceee
Confidence 46888899999999999999999998864 48999999 445543
No 157
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.37 E-value=8.1e-07 Score=58.91 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=43.6
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-------ceE------EEeeeEEEecCe
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-------DFV------VSQSYTVNIMDE 75 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-------~~v------~~g~y~c~~~~~ 75 (167)
|...|.++.+..|+++.|.|.+.+.|. |.+.|+|++. .+..... ..+ ..|.|+|.+.|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPR---PAYRWLKNGQ-PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCC---CEEEEEECCE-ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECC
Confidence 667899999999999999999999885 4799999854 3322111 111 268888888764
No 158
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.37 E-value=1.3e-06 Score=59.17 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=43.1
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCce-E--------EEeeeEEEecCe
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQDF-V--------VSQSYTVNIMDE 75 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~~-v--------~~g~y~c~~~~~ 75 (167)
....+.+..+.+|+++.|.|.+.|.|. .+.|+++++..+... +... + .+|.|+|.+.|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence 457888999999999999999998774 489999777555321 1111 1 268888888764
No 159
>PHA03376 BARF1; Provisional
Probab=98.36 E-value=4.5e-06 Score=63.44 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=54.9
Q ss_pred EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC----CCeeeE--------EeeeecCCceEEEcc-CC--eEEEee
Q psy12724 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD----QGEELF--------VDMTESTDGKYLVLP-SG--ELHIRD 134 (167)
Q Consensus 70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~----~~~~l~--------~~~~~~~~~r~~~~~-~g--~L~I~~ 134 (167)
|......+..|++|.|+|.-....-.+.-.|.|+|+ +...+. +.+ ...+++.+.. +| +|.|.+
T Consensus 16 ~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~Qm--EyRGrtD~~~~~gnvsLvI~~ 93 (221)
T PHA03376 16 AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW--PFRGFFDIHRSANTFFLVVTA 93 (221)
T ss_pred ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeee--ccccEEEEEecCCeEEEEEEe
Confidence 444445778999999999875322335668899994 211121 111 2345666643 23 699999
Q ss_pred cCcCCCCcceEEEeeecCcc
Q psy12724 135 VGPEDGYKSYQCRTKHRLTG 154 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~~~ 154 (167)
++.+|. |.|+|...-...+
T Consensus 94 l~lSDd-GtY~C~fQkge~~ 112 (221)
T PHA03376 94 ANISHD-GNYLCRMKLGETE 112 (221)
T ss_pred eeecCC-ceEEEEEEcCCCc
Confidence 999998 9999999876543
No 160
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.33 E-value=1.3e-06 Score=58.71 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=34.5
Q ss_pred eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.++|...|.+..+.+|+++.|.|.+.+.|.+ .+.|+|++.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p---~v~W~k~g~ 42 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAP---TVTWMREGQ 42 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCC---EEEEEECCE
Confidence 3567788999999999999999999998864 799999853
No 161
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.33 E-value=1.1e-06 Score=59.48 Aligned_cols=39 Identities=8% Similarity=0.200 Sum_probs=31.9
Q ss_pred eceeeEEeEEEEE---eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 11 QYYEAQVYDVFVI---KGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 11 ~~~~~~~~~~~v~---~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|..+|.++.+. +|+++.|.|.|.+.|.+ .++|+|++.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P---~i~W~k~g~ 43 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP---TYRWLRNGT 43 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC---EEEEEECCe
Confidence 4677888887765 47899999999998864 899999854
No 162
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.32 E-value=3.9e-06 Score=58.09 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=46.1
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----e---eEEee-e-------ecCCceEEE--ccCC---eEEEeec
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----E---LFVDM-T-------ESTDGKYLV--LPSG---ELHIRDV 135 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~---l~~~~-~-------~~~~~r~~~--~~~g---~L~I~~v 135 (167)
.|.+|++|.|.|.+... .....+.|+|.... . +.... . +...+|+.+ ..++ .|.|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~--~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGI--SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecC--CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 46789999999998642 12346899985421 1 00000 0 001346654 2222 5999999
Q ss_pred CcCCCCcceEEEeeec
Q psy12724 136 GPEDGYKSYQCRTKHR 151 (167)
Q Consensus 136 ~~~D~~G~Y~C~a~n~ 151 (167)
+.+|+ |.|.|...+.
T Consensus 80 ~~~Ds-g~YyCa~~~~ 94 (107)
T cd07700 80 KPEDS-GTYFCMTVGS 94 (107)
T ss_pred CHHHC-EEEEEeEcCC
Confidence 99999 9999998643
No 163
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.31 E-value=1.7e-06 Score=58.36 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=32.6
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI 57 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~ 57 (167)
.+.|.+..+..|+++.|.|.+.+.|. .+.|++.+++.+..
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~----~i~W~~~~~~~~~~ 43 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK----DISWFSPNGEKLVT 43 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC----eEEEECCCCCEecc
Confidence 56788899999999999999998852 69999876665543
No 164
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.30 E-value=4.4e-06 Score=57.13 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=45.6
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCC---eee--EEe-----eeecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQG---EEL--FVD-----MTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~---~~l--~~~-----~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C 146 (167)
+++.|+|..+. ......++|.|... ..+ ... +.+.-.+|.... .++.|.|+|++.+|+ |.|+|
T Consensus 1 ~~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~-G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDV-GLYCC 77 (96)
T ss_pred CCEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccC-EEEEE
Confidence 46899999864 23577889998532 122 110 001112455544 357899999999999 99999
Q ss_pred EeeecC
Q psy12724 147 RTKHRL 152 (167)
Q Consensus 147 ~a~n~~ 152 (167)
...+--
T Consensus 78 ~~~t~P 83 (96)
T cd05889 78 SLVTYP 83 (96)
T ss_pred EEEeCC
Confidence 998754
No 165
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.30 E-value=1.6e-06 Score=57.60 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=42.8
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------CCce------EEEeeeEEEecCe
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------NQDF------VVSQSYTVNIMDE 75 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------~~~~------v~~g~y~c~~~~~ 75 (167)
+...|.+..+.+|+++.|.|.+.+.|.+ .++|.|+++...... +... -.+|.|+|.+.|.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p---~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVP---QIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCC---EEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEEC
Confidence 4567888999999999999999988754 799999876432211 1111 1368888888664
No 166
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.29 E-value=1.5e-06 Score=58.76 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=32.4
Q ss_pred eceeeEEeEEEEEeC---CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 11 QYYEAQVYDVFVIKG---NAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G---~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|..+|.++.+.+| +++.|.|.|.+.|.+ .++|++++.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p---~i~W~~~g~ 43 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA---TYRWKMNGT 43 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC---EEEEEECCE
Confidence 467888999988777 579999999998764 799999854
No 167
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.28 E-value=4.9e-06 Score=56.43 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=44.0
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-ecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
...|.+|++|+|.|..+. +...+.|+|++. ...+... +...+++ ...+.|.+++.+|+ |.|+|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~----~~~~f~l~k~g~-~~~~~~~~~~~~~~~----~a~f~I~~~~~~~~-G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI----RFDRFILYKEGR-SKPVLHLYEKHHGGF----QASFPLGPVTPAHA-GTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC----CCCEEEEEECCC-CCCceecccccCCeE----EEEEEecCCCcccC-EEEEEEEE
Confidence 346779999999998752 334679999873 2111000 0011222 23689999999999 99999975
No 168
>KOG1480|consensus
Probab=98.24 E-value=1.1e-06 Score=78.24 Aligned_cols=144 Identities=14% Similarity=0.271 Sum_probs=100.4
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeCCCce-eeecCC------ceE-------------EEeeeE
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADTDGGQ-YQIDNQ------DFV-------------VSQSYT 69 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~~~~~-~~~~~~------~~v-------------~~g~y~ 69 (167)
+-|..+|++.++++|....|+|.|...+. .+.+.-.|..+..-. +-.+.. +.+ -...|.
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~ 104 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYW 104 (909)
T ss_pred ceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcccee
Confidence 34888999999999999999999987764 223345676553211 101100 000 135566
Q ss_pred EEe-----------------------------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724 70 VNI-----------------------------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG 120 (167)
Q Consensus 70 c~~-----------------------------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~ 120 (167)
|+- .-+.|..++...++|+.+- +.|...+.|+|++ ..+.+ +.
T Consensus 105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe--~~paae~~w~k~e-~~~~p------d~ 175 (909)
T KOG1480|consen 105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPE--GDPKAEVEWLKNE-VVIDP------DA 175 (909)
T ss_pred eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcc--cchhhhhhccccC-CCCCc------cc
Confidence 652 1145678999999999863 6788899999997 45532 44
Q ss_pred eEEEccCCeEEEeecCcCCCCcceEEEeeecC------cceEEEeeeCCe
Q psy12724 121 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL------TGETRLSATKGR 164 (167)
Q Consensus 121 r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~~~~ 164 (167)
......++.|.|..++.+|. |+|+|+|.|.. +....+.+.+++
T Consensus 176 n~~~~~d~~li~~~arlsd~-~nytc~a~ni~~~r~~~~~~v~vyv~ggw 224 (909)
T KOG1480|consen 176 NVIRASDHNLIISQARLSDS-GNYTCEATNIVAKRKSDPATVQVYVNGGW 224 (909)
T ss_pred cchhhhcCCccccchhhhhc-ccceeeeehhhccccccceEEEEEEcCcc
Confidence 45566788999999999998 99999999976 556677777664
No 169
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.22 E-value=7.1e-06 Score=55.72 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=29.5
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
..+.+..+.+|+++.|.|.+.+.|. |.+.|+|++
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~~G~P~---p~i~W~k~~ 39 (98)
T cd05870 6 IQLKNETTVENGAATLSCKAEGEPI---PEITWKRAS 39 (98)
T ss_pred EeeccEEEcCCCcEEEEEecccCCC---CeEEEEECC
Confidence 4578999999999999999999875 479999963
No 170
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.21 E-value=3.4e-06 Score=56.50 Aligned_cols=70 Identities=27% Similarity=0.506 Sum_probs=44.7
Q ss_pred EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
..|+.+.|.|.+.++. | ...++|++|+ ..+.... ....++.|.+ ...|.|......|. |.|+|.|.|.
T Consensus 11 ~~~~~~~L~C~a~g~~--P~~~~i~W~~~g-~~~~~~~~~~~~~~~~~gt~~~--~s~l~v~~~~~~~~-~~y~C~v~h~ 84 (95)
T cd00098 11 LLGGSVTLTCLATGFY--PPDITVTWLKNG-KELTSGVTTTPPVPNSDGTYSV--SSQLTVSPSDWNSG-DTYTCVVTHE 84 (95)
T ss_pred HcCCCeEEEEEEeeEE--CCCcEEEEEECC-EECCCceeccccccCCCCCEEE--EEEEEECHHHhCCC-CCEEEEEEeC
Confidence 3689999999998752 4 3579999997 4543210 0011122222 12466666666698 9999999998
Q ss_pred Cc
Q psy12724 152 LT 153 (167)
Q Consensus 152 ~~ 153 (167)
..
T Consensus 85 ~~ 86 (95)
T cd00098 85 SL 86 (95)
T ss_pred CC
Confidence 63
No 171
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.20 E-value=3.8e-06 Score=56.89 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=31.7
Q ss_pred eceeeEEeEEEEEeCC---cEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 11 QYYEAQVYDVFVIKGN---AAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~---~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|..+|.++.+.++. ++.|.|.|.|.|.+ .++|+|++.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P---~i~W~k~~~ 43 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP---IYKWRKNNL 43 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCC---EEEEEECCE
Confidence 4677888888776654 89999999998864 899999865
No 172
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.18 E-value=2.6e-05 Score=59.18 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=55.4
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-------ecCCceEEEc----cCCeEEEeecCcCCCCcc
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-------ESTDGKYLVL----PSGELHIRDVGPEDGYKS 143 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-------~~~~~r~~~~----~~g~L~I~~v~~~D~~G~ 143 (167)
..|.+|++|.|.|.... +...+.++|+|... .+. .+. ++-.+|+.+. .+..|.|.+++.+|+ |.
T Consensus 25 v~V~ege~VtLsCs~t~--s~~~~qVtWkK~~~-~Ia-tY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDe-Gc 99 (189)
T PHA02987 25 ITVSEHVNVKISCNKTS--SFNSILITWKKNNK-TIA-GYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDN-GC 99 (189)
T ss_pred EEEcCCCCEEEEEecCC--CCccceEEEEEcCC-CEE-EEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhC-eE
Confidence 46789999999999741 23567899999753 332 111 0112466532 245799999999999 99
Q ss_pred eEEEeeecC-----cceEEEeeeC
Q psy12724 144 YQCRTKHRL-----TGETRLSATK 162 (167)
Q Consensus 144 Y~C~a~n~~-----~~~~~l~~~~ 162 (167)
|.|....-. ++.+-|+++.
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEc
Confidence 999886532 4456666643
No 173
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.18 E-value=5.2e-05 Score=54.70 Aligned_cols=111 Identities=15% Similarity=0.316 Sum_probs=58.6
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEE-eeeEEEecCeEEEeCCcEEEEeeeCCccCCcc-eeE
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVS-QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYV-AVE 100 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~-g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i 100 (167)
..-|.+.|.|.+.+.++.. ....++. +.. +.....+.+....+|+.+.|.|.+.+. .|. +.|
T Consensus 9 ~~~D~G~Y~C~~~~~~~~~-~~~~~l~-------------v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~--~P~~~~i 72 (139)
T cd05771 9 TVHDEGTYICSVSTPPHQA-QQIIQLS-------------VSEPPRVRLSLEKLVSMIEEPQTLICHIAGY--YPLDVQV 72 (139)
T ss_pred CHHHCEEEEEEEEccCcce-eeEEEEE-------------EecCCceEEeCCCceeecCCcEEEEEEECCC--CCCCeEE
Confidence 3457899999987654321 0111111 111 112222233334479999999999864 254 589
Q ss_pred EEEeCCCeeeEE-----ee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 101 SWISDQGEELFV-----DM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 101 ~W~k~~~~~l~~-----~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+|+|++.....+ .. .++.++.|.+ ...|.|..-...+. +.|+|.+.+..
T Consensus 73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~--~s~L~v~~~~~~~g-~~ytC~V~H~~ 131 (139)
T cd05771 73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL--SSHLTLEPGTEDAG-ATYTCRVSHVS 131 (139)
T ss_pred EEEECCCCCccceeccCCeEecceEeCCCCCEEE--EEEEEecCCccCCC-CEEEEEEEcCC
Confidence 999987321100 00 0011222222 12466655444455 79999999865
No 174
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.18 E-value=6.3e-06 Score=54.90 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=27.1
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
...+.+|+++.|.|.+.|.|.| .++|.|++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P---~v~W~k~~~ 34 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP---TVTWSRGDK 34 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC---eEEEEECCE
Confidence 5678999999999999998864 899999854
No 175
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.16 E-value=9.7e-06 Score=55.91 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----e--eEEeee-------ec--CCceEEEccCC---eEEEeecCc
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----E--LFVDMT-------ES--TDGKYLVLPSG---ELHIRDVGP 137 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~--l~~~~~-------~~--~~~r~~~~~~g---~L~I~~v~~ 137 (167)
.+.+|++|+|.|..... -...+.|+|.... + |..... +. ..+|+.+..++ .|.|++++.
T Consensus 2 ~v~~G~~vtL~C~~~~~---~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~ 78 (104)
T cd05720 2 DAELGQKVELKCEVLNS---SPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK 78 (104)
T ss_pred cccCCCeEEEEEEecCC---CCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence 45689999999998532 2345799985421 1 111100 00 13466653322 699999999
Q ss_pred CCCCcceEEEeee
Q psy12724 138 EDGYKSYQCRTKH 150 (167)
Q Consensus 138 ~D~~G~Y~C~a~n 150 (167)
+|+ |.|.|...+
T Consensus 79 sDs-gtY~Ca~~~ 90 (104)
T cd05720 79 ENE-GYYFCSVAS 90 (104)
T ss_pred HHC-EEEEEEEcc
Confidence 999 999998764
No 176
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.15 E-value=3.3e-06 Score=56.41 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=29.7
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
..|++..+.+|+++.|.|.|.|.|. |.+.|.+++.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~---p~v~W~~~g~ 39 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPL---PKVEWIIAGL 39 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCC---CeEEEEECCE
Confidence 3566777999999999999999875 4899999864
No 177
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.14 E-value=1.5e-05 Score=52.58 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=41.1
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+.|.|.+.+ +.|.+.++|+|++ ..+.... ....++.|.+. ..|.+......|. +.|+|.|.|..
T Consensus 1 ~~~L~C~~~~--~~P~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~--s~l~~~~~~~d~g-~~~~C~v~h~~ 68 (82)
T cd05761 1 EVELTCTSSG--SKPAATIRWFKGD-KELKGVKLKEEDENGKTFTVT--SSLRFQVDREDDG-APIICRVDHPA 68 (82)
T ss_pred CEEEEEEecC--cCcCCeEEEEECC-EEccCceeeEecCCCCEEEEE--EEEEEEcchhhCC-CEEEEEEeChh
Confidence 3689999976 4688899999997 5553110 00112223222 2456655555665 79999999986
No 178
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.13 E-value=5.6e-06 Score=54.36 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.0
Q ss_pred EEeEEEEEeCCcEEEEeec-CCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNL-PSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a-~~~~~~~~~~i~W~k~~~ 52 (167)
+|.+..+.+|+++.|.|.+ .+.|. |.+.|+|++.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~---p~i~W~k~g~ 36 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPE---PTVSWRKDGQ 36 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCC---CEEEEEECCE
Confidence 5788999999999999998 56554 4799999753
No 179
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.13 E-value=2.1e-05 Score=52.27 Aligned_cols=64 Identities=22% Similarity=0.355 Sum_probs=42.7
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-e-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMT-E-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.+ +.|.+.|+|+|++ ..+..... + ...+.+.. ...|.|..-...|. ..|+|.|.|..
T Consensus 2 ~~L~C~s~g--SkP~A~I~W~k~~-~~l~~~~~~~~~~~~~~t~--~S~L~~~p~~eDdG-~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMA--SKPAATIRWFKGN-KELTGKSTVEETWSRMFTV--TSQLMLKVTKEDDG-VPVICLVDHPA 67 (82)
T ss_pred EEEEEEecC--CCCCCEEEEEECC-EECcCcccceeccCCCcEE--EEEEEEECchhhCC-CEEEEEEcCcc
Confidence 679999987 5799999999997 56532110 0 01112222 23588866666665 79999999986
No 180
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.12 E-value=5.4e-06 Score=53.37 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=33.4
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--------CceE------EEeeeEEEecCe
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------VSQSYTVNIMDE 75 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~~g~y~c~~~~~ 75 (167)
+|+++.|.|.+.+.|.+ .++|.|++. .+..+. ...+ ..|.|+|.+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p---~i~W~k~g~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 62 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP---VIAWTKGGS-QLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNI 62 (74)
T ss_pred CCCeEEEEeECCEecCC---EEEEEECCE-ECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeC
Confidence 69999999999998864 799999854 332211 1111 268888888764
No 181
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.11 E-value=1e-05 Score=52.07 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=40.0
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCC-e--e-eEEe------ee-ecCCceEEEccC-----CeEEEeecCcCCCCcceE
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQG-E--E-LFVD------MT-ESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~-~--~-l~~~------~~-~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~ 145 (167)
+|.|+|.+... ..+...+.|++... . . +... .. +...+|+.+..+ -.|.|.+++.+|+ |.|.
T Consensus 1 ~v~l~C~~~~~-~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGF-TFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDT-GTYY 78 (81)
T ss_pred CEEEEEEEecc-ccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHC-EEEE
Confidence 58899998643 11234789988542 1 1 1111 00 012457765533 2699999999999 9999
Q ss_pred EE
Q psy12724 146 CR 147 (167)
Q Consensus 146 C~ 147 (167)
|.
T Consensus 79 C~ 80 (81)
T smart00406 79 CA 80 (81)
T ss_pred Ec
Confidence 96
No 182
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.10 E-value=7.4e-06 Score=52.94 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce---------E------EEeeeEEEecCeE
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF---------V------VSQSYTVNIMDEH 76 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~---------v------~~g~y~c~~~~~~ 76 (167)
|+++.|+|.+.+.|. |.|+|.|++. .+..+ .+. + ..|.|+|.+.|..
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~k~~~-~l~~~-~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~ 62 (73)
T cd05852 1 GGRVIIECKPKAAPK---PKFSWSKGTE-LLVNN-SRISIWDDGSLEILNITKLDEGSYTCFAENNR 62 (73)
T ss_pred CCeEEEEEecceeCC---CEEEEEeCCE-ecccC-CCEEEcCCCEEEECcCChhHCEEEEEEEECCC
Confidence 789999999999875 4899999854 33222 121 1 2688888887653
No 183
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.09 E-value=2.3e-05 Score=55.24 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=47.4
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee--------ecCCceEEEccCC-----eEEEeecC
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT--------ESTDGKYLVLPSG-----ELHIRDVG 136 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~--------~~~~~r~~~~~~g-----~L~I~~v~ 136 (167)
...+.+|++|+|+|......- -...+.|+|.. +.+ |..... +.-.+||.+..++ .|.|++++
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~-~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTF-TSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCc-ccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 356788999999998753200 13457998743 122 111100 0113577664221 59999999
Q ss_pred cCCCCcceEEEeee
Q psy12724 137 PEDGYKSYQCRTKH 150 (167)
Q Consensus 137 ~~D~~G~Y~C~a~n 150 (167)
.+|+ |.|.|.+..
T Consensus 85 ~~Ds-a~YyCa~~~ 97 (117)
T cd04981 85 PEDT-AVYYCARGL 97 (117)
T ss_pred HHHC-EEEEEEEEc
Confidence 9999 999998864
No 184
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.09 E-value=1.3e-05 Score=54.53 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=29.7
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ 54 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~ 54 (167)
-.++.|.+|++|.|+|.+.+.+. |.|.|.|++++.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~---~~v~W~k~~~~~ 38 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDN---SSLQWSNTAQQT 38 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCC---CeEEEeccCccE
Confidence 46789999999999999999775 479999987653
No 185
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.08 E-value=1.3e-05 Score=51.29 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ceE------EEeeeEEEecCeE
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DFV------VSQSYTVNIMDEH 76 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~v------~~g~y~c~~~~~~ 76 (167)
|+++.|.|.+.+.|. |.+.|.++++..+..... ..+ ..|.|+|.+.+..
T Consensus 1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 63 (74)
T cd05764 1 GQRATLRCKARGDPE---PAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAA 63 (74)
T ss_pred CCeEEEEEEccCcCC---CEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCC
Confidence 789999999998875 479999876655532211 011 2688888887653
No 186
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.07 E-value=1e-05 Score=54.32 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
-|..+.+.+|+++.|.|.+.+.|.+ .+.|+|++.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p---~v~W~k~g~ 40 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDP---EVSWLKNDQ 40 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCC---eEEEEECCE
Confidence 4556889999999999999998754 799999853
No 187
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.06 E-value=1.9e-05 Score=53.04 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.6
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce-------E-------EEeeeEEEecCe
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF-------V-------VSQSYTVNIMDE 75 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~-------v-------~~g~y~c~~~~~ 75 (167)
+|++..+.+|+++.|.|.+.+ + .+.|.|.+++. .+..+..+. + .+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~-~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-N---LARVVWKFDGK-VLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-C---CCeEEEEECCE-ECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 688999999999999999854 2 25799999953 444332221 1 168888877654
No 188
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.03 E-value=9.2e-06 Score=49.06 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=42.3
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTE-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.+ .+.+.+.|++++. ........ .............|.|.+++.+|+ |.|.|.+.+..
T Consensus 1 ~~l~C~~~~---~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASG---PPPPTITWLKNGK-PLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDS-GTYTCVASNSA 66 (74)
T ss_pred CEEEEEecC---CCCCcEEEEECCE-ECCCcccEEeccccCcceeEEEEEECccCcccC-cEEEEEEecCc
Confidence 468999975 4778899999863 32111000 000111122345799999999998 99999998874
No 189
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.03 E-value=2.9e-05 Score=51.46 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=41.2
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCC-ceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTD-GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~-~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.+ +.|.+.|+|+||+ ..+.... .++.+ +.|.+. ..|.|......|. ..|+|.|.|..
T Consensus 2 ~~LtC~a~g--~~P~~~ItW~k~g-~~l~~~~~~~~~~~~~~t~~~~--s~l~~~~~~~d~g-~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSG--SKPAANIKWRKGD-QELEGAPTSVLEDGNGKTFTVS--SSVEFQVTREDDG-AEITCSVGHES 69 (83)
T ss_pred EEEEEEecC--ccCCCEeEEEECC-EECCCcceeEEECCCCCEEEEE--EEEEEEecchhCC-CEEEEEEECcc
Confidence 689999976 3588899999997 5543110 00111 122221 2466656667776 89999999986
No 190
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.03 E-value=1.6e-05 Score=53.39 Aligned_cols=34 Identities=12% Similarity=0.366 Sum_probs=28.1
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
...+..+..|+++.|.|.+.+.|.+ .+.|+|++.
T Consensus 9 ~~~~~~~~~G~~v~L~C~~~g~P~p---~v~W~k~g~ 42 (95)
T cd05730 9 SEVNATANLGQSVTLACDADGFPEP---TMTWTKDGE 42 (95)
T ss_pred cccceEEeCCCCEEEEEeccEeCCC---EEEEEECCE
Confidence 4456789999999999999988754 799999753
No 191
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.01 E-value=1.9e-05 Score=54.32 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=38.9
Q ss_pred eEEEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeeecCC-----------c--e-E--------EEeeeEEEecC
Q psy12724 18 YDVFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQIDNQ-----------D--F-V--------VSQSYTVNIMD 74 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~~~~-----------~--~-v--------~~g~y~c~~~~ 74 (167)
++..|.+|+++.|+|.+.+ .|. |.+.|.||+ ..+..+.. + . + .+|.|+|.+.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~---p~v~W~Kdg-~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPP---PHINWTYDN-RTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCC---CccEEEeCC-eeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 3678999999999999999 553 589999985 34432111 1 0 1 26999999987
Q ss_pred eE
Q psy12724 75 EH 76 (167)
Q Consensus 75 ~~ 76 (167)
..
T Consensus 87 ~~ 88 (101)
T cd04975 87 SD 88 (101)
T ss_pred CC
Confidence 64
No 192
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.00 E-value=3.1e-05 Score=53.37 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=46.6
Q ss_pred cCeEEEeCCcEEEEeeeCCccCCccee--EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724 73 MDEHVLKGNSAVLKCHIPSFVADYVAV--ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~--i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
....+.+|+..+|.|.+.+ +.|.+. |+|+|++ ..+..........+ .......|.+. +..+|-.-.|+|.|.+
T Consensus 9 ~p~~~~eG~~~tL~C~v~g--~~P~a~L~i~W~rG~-~~l~~~~~~~~~~~-~~~~~stlt~~-~~r~D~g~~~sC~A~l 83 (100)
T cd05755 9 LPSWQPVGKNYTLQCDVPG--VAPRQNLTVVLLRGN-ETLSRQPFGDNTKS-PVNAPATITIT-VDREDHGANFSCETEL 83 (100)
T ss_pred CCCcccCCCcEEEEEEEcC--cCCCCcEEEEEeeCC-EEcccceeccccCC-CceeEEEEEEe-cchhhCCcEEEEEEEe
Confidence 3446789999999999987 468876 7999997 55532110000000 01112356665 4455541499999999
Q ss_pred cC
Q psy12724 151 RL 152 (167)
Q Consensus 151 ~~ 152 (167)
.+
T Consensus 84 ~l 85 (100)
T cd05755 84 DL 85 (100)
T ss_pred cc
Confidence 87
No 193
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.98 E-value=1.3e-05 Score=51.24 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=31.7
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-----Cc--eE----EEeeeEEEecCe
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-----QD--FV----VSQSYTVNIMDE 75 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-----~~--~v----~~g~y~c~~~~~ 75 (167)
|+++.|.|.|.|.|.| .|.|.|++. .+.+.. .. .+ ..|.|+|.+.|.
T Consensus 1 G~~v~L~C~a~G~P~P---~v~W~k~g~-~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~ 58 (69)
T cd05739 1 GGSVNLTCVAVGAPMP---YVKWMKGGE-ELTKEDEMPVGRNVLELTNIYESANYTCVAISS 58 (69)
T ss_pred CCeEEEEEEeeecCCC---EEEEEECCE-ECCCccceecCccEEEEeccccCeeEEEEEEeC
Confidence 7899999999998864 899999865 343211 10 01 257777777654
No 194
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.97 E-value=8.1e-05 Score=49.89 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=47.6
Q ss_pred CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
+..++.|++.+|.|+.++. ..|.+.|+|+..++.... -.......|.+.+++..|+ |..+|..+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~-s~p~~~i~w~~P~n~~~~----------~~~~~~ktL~~~qv~~qdS-G~WtC~V~ 71 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSN-SLPAFKVEWRGPGNKSKQ----------ILNQDKKTLNLVQLGPNDS-GTWDCIVS 71 (88)
T ss_pred CCeeecCCcEEEEEecCCC-CCCCccEEEeCCCCccce----------eccCCccEEEeceeCcccC-CEEEEEEE
Confidence 4578899999999999653 346669999876642221 1112345799999999999 99999985
No 195
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.95 E-value=2.3e-05 Score=53.16 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.6
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+....+.+|+++.|.|.|.+.|.+ ..|.|.+++.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P--~~v~W~~~~~ 41 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPP--DRIVWTWKEN 41 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCC--CEeEEEECCE
Confidence 456778999999999999988754 1599999854
No 196
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.94 E-value=3e-05 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.5
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
|+++.|+|.|.+.|. |.|+|+|+
T Consensus 1 G~~v~l~C~v~g~P~---P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQ---PHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCC---CeEEEEEe
Confidence 789999999999986 47999996
No 197
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.91 E-value=3.7e-05 Score=52.87 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------------c-----eE------EEeeeEEEecCe
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------------D-----FV------VSQSYTVNIMDE 75 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------------~-----~v------~~g~y~c~~~~~ 75 (167)
...+..|+.+.|.|.+.++|.| .+.|+|++. ++..+.. + .+ .+|.|+|.+.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P---~v~W~kdg~-~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP---QIRWLKDNR-TLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC---ceEEEECCE-ECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 6778899999999999999865 799999854 4432210 1 11 279999999886
Q ss_pred E
Q psy12724 76 H 76 (167)
Q Consensus 76 ~ 76 (167)
.
T Consensus 88 ~ 88 (101)
T cd05859 88 D 88 (101)
T ss_pred C
Confidence 4
No 198
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.89 E-value=3.1e-05 Score=50.18 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
|+.+.|.|.|.+.|.+ .|+|+|++ +.+
T Consensus 1 g~~~~l~C~a~G~P~P---~i~W~k~g-~~i 27 (76)
T cd05868 1 GEDGTLICRANGNPKP---SISWLTNG-VPI 27 (76)
T ss_pred CCCEEEEEEeeEeCCC---eEEEEECC-EEc
Confidence 7899999999999864 89999974 444
No 199
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.89 E-value=3e-05 Score=50.60 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=27.6
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ 56 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~ 56 (167)
|++..+.+|+++.|.|.+.+.+ +.+.|.|++ ..+.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g-~~l~ 35 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDDV----QSINWTKDG-VQLG 35 (79)
T ss_pred CCcEEecCCCCEEEEEEecCCC----ceEEEeeCC-cCCC
Confidence 4567899999999999998853 369999985 3443
No 200
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.87 E-value=6.8e-05 Score=50.82 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=27.3
Q ss_pred eEEEEEeCCcEEEEeecCCC-----CCCcceeeEEeeCCCc
Q psy12724 18 YDVFVIKGNAAVFKCNLPSF-----VSDHLDVVSWADTDGG 53 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~~-----~~~~~~~i~W~k~~~~ 53 (167)
.+..+.+|+++.|.|.+.+. |. |.|.|+|++..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~---~~v~Wyk~~~~ 44 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPG---LNLTWYKSDGK 44 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCC---ceEEEEEcCCC
Confidence 57788999999999999984 43 47999999754
No 201
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.87 E-value=9.6e-05 Score=49.01 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=41.1
Q ss_pred EEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 83 AVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+.|.|.+.+. .|...|+|+||+ ..+.... .+..++.|.+. ..|.|..-...|. ..|+|.+.|..
T Consensus 2 ~~LtC~a~gf--~P~~~itW~kng-~~l~~~~~~~~~~~~~~t~~~~--s~L~~~~~~~d~g-~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGS--KPAADIRWFKND-KEIKDVKYLKEEDANRKTFTVS--STLDFRVDRSDDG-VAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCc--cCCCEEEEEECC-EECcCceeeEeeCCCCCEEEEE--EEEEEEcccccCC-CEEEEEEechh
Confidence 6799999873 577899999997 4542110 00112223222 2577765556666 79999999976
No 202
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.86 E-value=3.9e-05 Score=50.29 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.2
Q ss_pred EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
..|.+|+++.|.|.+.+.|. |.+.|+|++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~ 33 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPT---PTMRWLKNGK 33 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCC---CEEEEEECCE
Confidence 45788999999999998865 4799999854
No 203
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.86 E-value=4.3e-05 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
|+++.|.|.+.+.|. +.+.|+|++
T Consensus 1 g~~~~l~C~~~g~p~---~~i~W~k~~ 24 (88)
T cd05735 1 GQKKEMSCTAHGEKP---IIVRWEKED 24 (88)
T ss_pred CCeEEEEEEEECCCC---CEEEEeeCC
Confidence 789999999999865 379999986
No 204
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.83 E-value=3.8e-05 Score=49.59 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=21.4
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|.+.+.|.+ .++|+|++.
T Consensus 1 G~~v~l~C~~~G~P~p---~i~W~k~g~ 25 (76)
T cd05867 1 GETARLDCQVEGIPTP---NITWSINGA 25 (76)
T ss_pred CCeEEEEEEeeEeCCC---eEEEEECCE
Confidence 7899999999988764 799999753
No 205
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.82 E-value=4.2e-05 Score=48.84 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=29.8
Q ss_pred cEEEEeecCCCCCCcceeeEEeeCCCceeeecC--------CceE------EEeeeEEEecCe
Q psy12724 27 AAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------VSQSYTVNIMDE 75 (167)
Q Consensus 27 ~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~~g~y~c~~~~~ 75 (167)
.+.|+|.+.|.|. |.++|+|++.. +.+.. ...+ ..|.|+|.+.|.
T Consensus 1 ~v~l~C~~~G~P~---p~v~W~k~g~~-~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~ 59 (71)
T cd05723 1 DVIFECEVTGKPT---PTVKWVKNGDM-VIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAEND 59 (71)
T ss_pred CEEEEEEEEEeCC---CEEEEEECCeE-CCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcC
Confidence 4789999999886 48999998653 32211 1111 267888887664
No 206
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.82 E-value=5.6e-05 Score=50.68 Aligned_cols=33 Identities=6% Similarity=0.172 Sum_probs=28.8
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
.+.+..+.+|+++.|.|.+.+.|.+ .+.|++++
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g~p~p---~v~W~~~~ 39 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEGDPIP---EITWRRAT 39 (96)
T ss_pred ecCceeEecCCcEEEEEEEeEcCCC---cEEEEECC
Confidence 5678899999999999999998754 79999975
No 207
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.82 E-value=6.1e-05 Score=50.97 Aligned_cols=38 Identities=5% Similarity=0.076 Sum_probs=28.8
Q ss_pred eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
+.+...+.+..+..|+++.|.|.+.|.|. |.++|.+++
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~ 40 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPI---PSITWRTST 40 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCC---CEEEEEECC
Confidence 44555555555556899999999999875 479999974
No 208
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.82 E-value=4e-05 Score=51.23 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=30.3
Q ss_pred eceeeEEeEEEEEeC---CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 11 QYYEAQVYDVFVIKG---NAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 11 ~~~~~~~~~~~v~~G---~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|..+|.++.+.+| +++.|.|.+.+.|. |.++|+|++.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~---p~i~W~k~~~ 43 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPP---PTYRWLMNGT 43 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCC---CEEEEEECCE
Confidence 457778888776554 67999999988775 4899999854
No 209
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.80 E-value=5.7e-05 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
|.|.|.+.+.|.| .++|+|++..
T Consensus 1 a~l~C~~~G~P~P---~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGHPTP---QIAWQKDGGT 23 (75)
T ss_pred CEeEeecccccCC---EEEEEeCCCc
Confidence 5799999998864 7999998653
No 210
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.79 E-value=6.2e-05 Score=50.66 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=27.5
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.+++..+.+|+++.|.|.|.+. . |.|.|+|++.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~---p~i~W~kng~ 41 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-A---TYIWWVNNGS 41 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-C---CEEEEEECCE
Confidence 3456789999999999999988 4 4799999854
No 211
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.78 E-value=8.2e-05 Score=48.93 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=30.2
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
....|.+..+.+|+++.|.|.+.+... .+.+.|.+++..
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~ 42 (85)
T cd05754 4 TVEEPRSQEVRPGADVSFICRAKSKSP--AYTLVWTRVGGG 42 (85)
T ss_pred EecCCCceEEcCCCCEEEEEEcCCCCC--CcEEEEEECCCc
Confidence 345677889999999999999976322 358999998653
No 212
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.78 E-value=4.5e-05 Score=51.32 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.|..+.+.+|+++.|.|.+.+.|.+ .+.|+|++.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p---~i~W~k~~~ 40 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDP---EVIWFKNDQ 40 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCC---eEEEEECCE
Confidence 3567889999999999999887754 799999865
No 213
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.75 E-value=7.5e-05 Score=47.78 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=21.2
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|.+.+.|.+ .|.|++++.
T Consensus 1 G~~~~l~C~~~g~P~p---~i~W~~~g~ 25 (76)
T cd04978 1 GETGRLDCEAEGIPQP---TITWRLNGV 25 (76)
T ss_pred CCeEEEEEEceeeCCC---EEEEEECCE
Confidence 7899999999988754 799999754
No 214
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.74 E-value=4.5e-05 Score=48.62 Aligned_cols=45 Identities=7% Similarity=0.193 Sum_probs=31.5
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE--------EEeeeEEEecCeE
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV--------VSQSYTVNIMDEH 76 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v--------~~g~y~c~~~~~~ 76 (167)
+.|.|.+.+.|.| .+.|+|++ +.+...... .+ .+|.|+|.+.|..
T Consensus 1 ~~l~c~v~g~P~P---~v~W~kdg-~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~ 54 (67)
T cd05863 1 VKLPVKVAAYPPP---EFQWYKDG-KLISGKHSQHSLQIKDVTEASAGTYTLVLWNSA 54 (67)
T ss_pred CEEEEEEEEeCCC---EEEEEECC-EECcccCCcCEEEECCCCHHHCEEEEEEEEECC
Confidence 3699999999865 79999984 455432221 11 3799999997653
No 215
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=97.72 E-value=6.4e-05 Score=48.85 Aligned_cols=22 Identities=9% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|+|.+.+.|.| .|.|+|++.
T Consensus 1 v~l~C~v~G~P~P---~i~W~k~~~ 22 (75)
T cd05892 1 VKLECQISAIPPP---KIFWKRNNE 22 (75)
T ss_pred CEEEEEEEecCCC---eEEEEECCE
Confidence 4799999999864 899999853
No 216
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.72 E-value=8.5e-05 Score=47.47 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCceE------EEeeeEEEecCeE
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQDFV------VSQSYTVNIMDEH 76 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~~v------~~g~y~c~~~~~~ 76 (167)
|+++.|.|.+.+.|. |.++|+|++. .+..+ +...+ ..|.|+|.+.|..
T Consensus 1 G~~v~L~C~~~g~P~---p~v~W~k~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 62 (73)
T cd04969 1 GGDVIIECKPKAAPK---PTISWSKGTE-LLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF 62 (73)
T ss_pred CCeEEEEEeeeEcCC---CEEEEEECCE-EcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCC
Confidence 789999999988775 4799999864 33221 11111 2688999887653
No 217
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=97.70 E-value=5.8e-05 Score=49.00 Aligned_cols=22 Identities=9% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|+|.+.|.|.| .|.|+|++.
T Consensus 1 v~l~C~v~G~P~P---~v~W~k~~~ 22 (75)
T cd05893 1 VRLECRVSGVPHP---QIFWKKENE 22 (75)
T ss_pred CEEEEEEeEecCC---EEEEEECCE
Confidence 4799999999864 899999864
No 218
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.68 E-value=0.00015 Score=48.23 Aligned_cols=26 Identities=15% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
|+++.|.|.+.+.|.+ .+.|+|++.+
T Consensus 1 G~~v~L~C~~~g~P~p---~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEATGNPQP---AIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEECCccCCC---EEEEEeCCCc
Confidence 7899999999988754 7999998654
No 219
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.67 E-value=0.00012 Score=50.08 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=37.9
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-c---------CCceE------EEeeeEEEecCeE
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-D---------NQDFV------VSQSYTVNIMDEH 76 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~---------~~~~v------~~g~y~c~~~~~~ 76 (167)
.+...|.+|+.++|+|..+...++ +.+.|.|++...+.. + |+++. .+|.|+|.+++..
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence 345668999999999998766544 589999985432211 1 22211 2688888886643
No 220
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.66 E-value=0.00015 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.1
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
|+++.|+|.+.+.|. |.|+|+|+
T Consensus 1 G~~v~L~C~~~g~P~---P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQ---PHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCC---CEEEEEEe
Confidence 789999999998876 48999985
No 221
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.65 E-value=0.00015 Score=49.48 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.1
Q ss_pred EEeEEEEEeCCcEEEEee-cCCCCCCcceeeEEeeCCCcee
Q psy12724 16 QVYDVFVIKGNAAVFKCN-LPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~-a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
..+.+.|.+|+++.|.|. ..++|. |.|.|.+++...+
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~---P~i~W~~~~~~~i 46 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVP---LRIYWMNSDLLHI 46 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCC---CEEEEECCCCccc
Confidence 357889999999999997 566665 4899998765434
No 222
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.65 E-value=0.00025 Score=47.06 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.4
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.+....+.+|+++.|+|.+.+ +. +.+.|+|++.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~---~~i~W~k~~~ 34 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NL---ASVVWLFQGG 34 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CC---ceEEEEECCc
Confidence 567889999999999999876 33 4799999965
No 223
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.64 E-value=0.00038 Score=46.07 Aligned_cols=67 Identities=21% Similarity=0.445 Sum_probs=41.7
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe--e--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVD--M--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~--~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+.+.|.|.+.+ +.|.|.|+|+.+++ .+... . .....+.+.+. ..|.+..-...+. ..++|.|.|..
T Consensus 14 ~~~~~~~C~s~~--~~P~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~-~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSG--GYPPPQITWYLDGG-PVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHG-KTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEE--EBS-EEEEEEETTC-EECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTT-EEEEEEEEETT
T ss_pred ceEEEEEEEeCC--eECCeEEEEEECCC-ceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCC-eEEEEEEECCc
Confidence 569999999865 57999999999984 43110 0 01122223222 2466655444454 79999999986
No 224
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.62 E-value=0.00029 Score=45.50 Aligned_cols=65 Identities=23% Similarity=0.500 Sum_probs=39.7
Q ss_pred cEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYV-AVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.++|.|.+.++. |. ..++|+||+ ..+.... ..+.++.|.+. ..|.|......+. ..|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~--P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~-~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFY--PPDITVTWLRNG-QEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESG-DTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEe--CCCCEEEEEECC-EECCCCEEECceEECCCCCEEEE--EEEEEccccCCCC-CEEEEEEEEcC
Confidence 378999998762 44 478999997 4432111 00122333321 2466666566676 89999998864
No 225
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.61 E-value=0.00042 Score=46.66 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=39.9
Q ss_pred CCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEE---EeecCcCCCCcceEEEeeecC
Q psy12724 80 GNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELH---IRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~---I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
|+.+.|.|.+.++. |.+ .++|+|++ ..+.... .........+|... .-.+..+|. +.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~--P~~i~v~W~~~g-~~~~~~~---~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFY--PRDIEVTWLRDG-EDSVDDV---ESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEe--CCCcEEEEEECC-EECcccc---cccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence 78899999998762 443 78999997 3221110 11122223344322 223445587 99999999875
No 226
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.60 E-value=0.00013 Score=47.37 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|.+.+.|. |.+.|+++++
T Consensus 1 G~~v~l~C~~~g~P~---p~v~W~~~~~ 25 (78)
T cd05743 1 GETVEFTCVATGVPT---PIINWRLNWG 25 (78)
T ss_pred CCEEEEEEEEEEecC---CEEEEEECCe
Confidence 789999999999875 4899999865
No 227
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.59 E-value=0.00012 Score=47.30 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=24.6
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
.+..|+++.|.|.+.+.|.+ .+.|+|++..
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p---~i~W~k~~~~ 34 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP---DITWLKDNKP 34 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC---cEEEEECCcC
Confidence 45679999999999988754 6999998654
No 228
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.56 E-value=0.00015 Score=46.90 Aligned_cols=22 Identities=9% Similarity=0.460 Sum_probs=18.4
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|+|.+.+.|.| .|.|.|++.
T Consensus 1 v~L~C~v~G~P~P---~v~W~k~~~ 22 (75)
T cd05744 1 VRLECRVSAIPPP---QIFWKKNNE 22 (75)
T ss_pred CEEEEEEeecCCC---eEEEEECCE
Confidence 4799999999864 799999853
No 229
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.54 E-value=0.00012 Score=46.68 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=30.3
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEeeeEEEecCeE
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQSYTVNIMDEH 76 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g~y~c~~~~~~ 76 (167)
+.|+|.+.|.|.| .+.|+|+++.. ..+.. ..+ ..|.|+|.+.|..
T Consensus 1 ~~L~C~~~G~P~P---~v~W~k~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05876 1 LVLECIAEGLPTP---EVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE 59 (71)
T ss_pred CEEEEEeeEecCC---eEEEEECCcCC-CCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCC
Confidence 3699999998864 89999987643 22111 111 2689999887654
No 230
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.50 E-value=0.0017 Score=45.46 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=42.2
Q ss_pred eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee---eecCC-ceEEEccCCeEEEeecCcCCCCc-ceEEEe
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM---TESTD-GKYLVLPSGELHIRDVGPEDGYK-SYQCRT 148 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~---~~~~~-~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a 148 (167)
.....|+.++|.|.+.++ .|. -.++|+||+ ..+.... ....+ +.|.+. ..|.+.. ...|. | .|+|.+
T Consensus 16 ~~~~~g~~~tL~C~a~gF--~P~~i~v~W~kng-~~~~~~~~~~~p~~d~~ty~~~--S~L~~~~-~~~d~-~~~ytC~V 88 (111)
T cd05772 16 GRANPGQSVNFTCSAHGF--SPRDITVKWLKNG-NELSAEQPNITPEGDSVSYNVT--STVQVKL-TEDDV-HSQVTCEV 88 (111)
T ss_pred hccCCCCCEEEEEEEeeE--eCCCCEEEEEECC-EECcccccceeeCCCCCcEEEE--EEEEEEC-ccccc-cCceEEEE
Confidence 344578899999999876 243 478999997 4542110 00111 123321 2355553 44554 5 499999
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.+..
T Consensus 89 ~H~~ 92 (111)
T cd05772 89 QHRT 92 (111)
T ss_pred EeCC
Confidence 9975
No 231
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.45 E-value=0.00055 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=20.6
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
|+++.|.|.+.+.|.+ .+.|+|+.
T Consensus 1 G~~v~l~C~~~g~P~p---~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPP---EITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCC---cEEEEecC
Confidence 7899999999988764 79999973
No 232
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.45 E-value=0.0013 Score=44.86 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=41.5
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
..++.|.+.+ +.|.+.|+|+++..........+..++.+.+. ..|.+..-...|. -.|+|+++|..
T Consensus 17 ~~va~C~s~~--gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~~P~~~d~G-k~ltC~v~h~a 82 (95)
T cd07703 17 VPVAKCVSAN--GRPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSLVPTPEANG-KEVTCKVEHET 82 (95)
T ss_pred cEEEEEEcCC--CCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEEecCHHHCC-CEEEEEEeCcc
Confidence 4678999876 67999999999842111111001123334332 3577766666666 79999999975
No 233
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.44 E-value=0.0002 Score=46.03 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.3
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|.|.|.+.|.|.+ .|.|+|++.
T Consensus 1 a~l~C~~~G~P~p---~v~W~k~~~ 22 (74)
T cd05738 1 ATMLCAASGNPDP---EITWFKDFL 22 (74)
T ss_pred CEEEEEEeEecCC---EEEEEECCE
Confidence 5799999998864 899999853
No 234
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.41 E-value=0.00063 Score=43.05 Aligned_cols=54 Identities=9% Similarity=0.241 Sum_probs=36.2
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
-+.|.+|+|.|...+ .. |.|.+|+ ..+. + .+..+...|-. ++. |.|+|.+.+..
T Consensus 4 sisGTtVtlTCP~~~-----~~-i~W~~n~-~~~~-------g------~~~~~~~~~~~-e~~-G~Y~C~~~~~~ 57 (65)
T cd07692 4 SISGTTVTVTCPLSG-----DD-IKWKKND-QVSQ-------G------SDEKYLSLNHF-SSS-GYYHCTADNAN 57 (65)
T ss_pred EEeccEEEEECCCCC-----CC-ceEEeCC-ccCC-------C------CCceEEeeccC-CCC-ceEEEEeCCCc
Confidence 467999999998542 22 8999997 3331 1 12234444555 888 99999997653
No 235
>KOG3515|consensus
Probab=97.39 E-value=0.00063 Score=61.36 Aligned_cols=127 Identities=12% Similarity=0.152 Sum_probs=78.7
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee------------ecCCceEEEeeeEEEecC------------
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ------------IDNQDFVVSQSYTVNIMD------------ 74 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~------------~~~~~~v~~g~y~c~~~~------------ 74 (167)
+.-+..|+.+.|.|.+.+.|++ +.+.|++.+...-. .+..+ -.-+.|.|++.+
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~a~ns~~~~~~~~~~l 92 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSGEHGRYATIADPTLVTTGDVR-DTVAELNCRAFNSVGMPSRCPMIL 92 (741)
T ss_pred ChhhccCCcceeeeecCCCCCC--cceEEEecCcccccccccccCCceeeecchh-hhhhhhhhhhcccccCceecceee
Confidence 3467899999999999988865 68999988643220 00000 002334443311
Q ss_pred --------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee----c--CCceEEEccCCeEEEee
Q psy12724 75 --------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTE----S--TDGKYLVLPSGELHIRD 134 (167)
Q Consensus 75 --------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~----~--~~~r~~~~~~g~L~I~~ 134 (167)
.....+..+.+.|.+... +.|.+.+.|..+. ........+ . ..+.+. .....|++..
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~-~~P~~nlrW~~n~-r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v 169 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVA-GRPNPNLRWGFNN-RAELNAVNQRGRVGAGALGSSY-TEPSLLKQTV 169 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEeecCC-CCCCcceeeeecc-EEeecccCCcccccccccCcee-ccccceeeEE
Confidence 123468889999966433 6789999999886 332211000 0 001111 1234589999
Q ss_pred cCcCCCCcceEEEeeecC
Q psy12724 135 VGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~ 152 (167)
.+.+|. |+|+|.|.|..
T Consensus 170 ~Rka~~-g~~tC~A~nr~ 186 (741)
T KOG3515|consen 170 SRKADN-GNYTCPANNRN 186 (741)
T ss_pred EEecCC-ceeEccccccc
Confidence 999998 99999999965
No 236
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.38 E-value=0.00069 Score=47.02 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.0
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
.|+++.|.|.|.+.|. +.++|.|++
T Consensus 22 ~g~~v~L~C~a~G~P~---p~i~W~k~g 46 (109)
T cd05773 22 GSSDANLVCQAQGVPR---VQFRWAKNG 46 (109)
T ss_pred CCCEEEEEEECcccCC---CEEEEEECC
Confidence 4589999999998875 479999974
No 237
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.37 E-value=0.0008 Score=46.10 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
....+.+.+|+++.|+|.+.+.|.+ ..|.|...+.
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~P--~~i~W~w~~~ 41 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPPP--DRIAWAWKEN 41 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCCC--cEEEEEEccc
Confidence 4456789999999999999888875 3578876643
No 238
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.35 E-value=0.00041 Score=44.89 Aligned_cols=22 Identities=9% Similarity=0.409 Sum_probs=18.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.|.+.+.|.+ .++|+|++.
T Consensus 1 v~L~C~~~g~P~p---~v~W~k~g~ 22 (77)
T cd05760 1 VTLRCHIDGHPRP---TYQWFRDGT 22 (77)
T ss_pred CEEEEEeeecCCC---cEEEEECCE
Confidence 4799999998764 799999854
No 239
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.34 E-value=0.0025 Score=43.34 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=40.3
Q ss_pred CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
....+.|.+.+ |.|.+.|+|+++.............++.+.+. ..|.+..-...|. -.|+|.+.|..
T Consensus 16 ~~~va~C~s~~--gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~~p~~~d~G-~~~tC~v~h~~ 82 (95)
T cd05719 16 PVTVATCVSAN--GKPPATISWETTLGGEAETQSKENPNGTVTVT--SEYRLVPSREANG-KELTCVVSHPT 82 (95)
T ss_pred ccEEEEEECCC--CcCCCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEEecCHHHCC-CEEEEEEeCcc
Confidence 34667999865 67999999999721111111000112223322 2566765556665 69999999976
No 240
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.34 E-value=0.00025 Score=44.81 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=28.7
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEeeeEEEecCe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQSYTVNIMDE 75 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g~y~c~~~~~ 75 (167)
+.|.|.+.+.|.+ .++|.|++. .+..... ..+ ..|.|+|.+.|.
T Consensus 1 v~L~C~~~g~P~p---~i~W~k~g~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 58 (69)
T cd05746 1 VQIPCSAQGDPEP---TITWNKDGV-QVTESGKFHISPEGYLAIRDVGVADQGRYECVARNT 58 (69)
T ss_pred CEeEecceEeCCC---EEEEEECCE-ECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECC
Confidence 4699999998864 799999753 3432111 011 268888888664
No 241
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.33 E-value=0.0005 Score=43.28 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=28.6
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeec-------CCceE------EEeeeEEEecCe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQID-------NQDFV------VSQSYTVNIMDE 75 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-------~~~~v------~~g~y~c~~~~~ 75 (167)
+.|+|.+.+.|.+ .+.|+|+++. +... +.+.+ .+|.|+|.+.|.
T Consensus 1 v~l~C~~~g~P~p---~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 57 (69)
T cd05725 1 VEFQCEVGGDPVP---TVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENM 57 (69)
T ss_pred CEEEEECccCCCC---EEEEEECCcc-CCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcC
Confidence 4799999998764 7999998653 2211 11111 268888888664
No 242
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.33 E-value=0.00053 Score=43.73 Aligned_cols=23 Identities=9% Similarity=0.300 Sum_probs=19.1
Q ss_pred cEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 27 AAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 27 ~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
++.|.|.+.|.|.+ .+.|+|++.
T Consensus 1 ~~~l~c~~~G~P~p---~v~W~k~g~ 23 (74)
T cd05748 1 SVRLEVPISGRPTP---TVTWSKDGK 23 (74)
T ss_pred CEEEEeeEeeeCCC---eEEEEECCE
Confidence 46899999999864 799999854
No 243
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.32 E-value=0.0014 Score=44.39 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=30.1
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
.++++.+.+|+++.|+|.+.+.+. +.+.|++.++..+
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~---~~v~W~~~~~~~l 39 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDN---TSLQWSNPAQQTL 39 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCc---eEEEEeCCCCeEE
Confidence 567899999999999999998875 4799997654433
No 244
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.32 E-value=0.0008 Score=44.36 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=36.3
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-cCC--ceE------EEeeeEEEecC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-DNQ--DFV------VSQSYTVNIMD 74 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~~~--~~v------~~g~y~c~~~~ 74 (167)
++....|.+|+++.|+|.+.+.... +.+.|+|++. .+.. +.. ..+ .+|.|.|.+.+
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~--~~~~w~k~g~-~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPV--YKVTYYRDGK-AKKYSHSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcc--eEEEEEECCe-EccccCCCceEEECccCHHHCEEEEEEEEe
Confidence 3445679999999999998653322 4699999864 3321 111 111 37999998753
No 245
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.31 E-value=0.0011 Score=44.15 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.2
Q ss_pred CcEEEEeecCCCCCCcceeeEEeeCCCceee--ecCCc------------eE-------EEeeeEEEecCeEEEeCCcEE
Q psy12724 26 NAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ--IDNQD------------FV-------VSQSYTVNIMDEHVLKGNSAV 84 (167)
Q Consensus 26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~--~~~~~------------~v-------~~g~y~c~~~~~~v~~G~~a~ 84 (167)
+++.|+|.|..++... +.+.|++++. .|. .++.+ .+ .+|.|+|.+++..-..-.+|.
T Consensus 1 ~~~~l~C~v~~d~~l~-~~~~W~~dg~-~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLD-IVFTWSFNGH-LIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCC-cEEEEEECCE-ECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 4789999998866432 4699999954 443 11111 11 169999999875433334444
Q ss_pred E
Q psy12724 85 L 85 (167)
Q Consensus 85 l 85 (167)
|
T Consensus 79 L 79 (85)
T cd05853 79 L 79 (85)
T ss_pred E
Confidence 4
No 246
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.30 E-value=0.0023 Score=43.33 Aligned_cols=66 Identities=23% Similarity=0.412 Sum_probs=40.1
Q ss_pred EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 78 LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
..|+.++|.|.+.++. |.. .++|+||+ ..+.... .++.++.|.+. ..|.+ ..++. ..|+|.+.+.
T Consensus 12 ~~~~~~~L~C~~~gFy--P~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgTy~~~--s~L~~---~~~~~-~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFY--PPEITVKWFKNG-QEETEGVVSTELIPNGDWTYQIL--VMLET---TPSRG-DTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeec--CCCCEEEEEECC-eecCCCceecceEECCCCcEEEE--EEEEE---cCCCC-CEEEEEEEeC
Confidence 4689999999998863 433 67999998 4442210 01122233221 12333 34566 7999999987
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 83 ~ 83 (94)
T cd05766 83 S 83 (94)
T ss_pred C
Confidence 5
No 247
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.30 E-value=0.0014 Score=44.51 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=40.6
Q ss_pred EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe---ecCcCCCCcceEEEeeecC
Q psy12724 78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR---DVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~---~v~~~D~~G~Y~C~a~n~~ 152 (167)
..|+.++|.|.|.++.. +.-.++|+||| ..+. .. .........||+..+. .+.+++. ..|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP-~~i~v~W~~dg-~~~~-~~---~~~~~~p~~d~tyq~~s~l~~~~~~~-~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHP-PDIEIRLLKNG-VKIP-KV---EQSDLSFSKDWTFYLLKSTEFTPTKG-DEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeC-CCCEEEEEECC-EECC-Cc---EECcEEECCCCCEEEEEEEEECCCCC-CeEEEEEEECC
Confidence 34777899999988622 23467999998 4542 21 0111222234433322 3356777 89999999864
No 248
>PHA03376 BARF1; Provisional
Probab=97.21 E-value=0.0059 Score=46.74 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=71.5
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeC----CCceeeecCC-----------c----------eE--------EE
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT----DGGQYQIDNQ-----------D----------FV--------VS 65 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~----~~~~~~~~~~-----------~----------~v--------~~ 65 (167)
-+++..|+.|.|.|.-.......-..|.|+|. +...+..++. + .+ ..
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 57788999999999987433323457999994 2222222111 1 01 16
Q ss_pred eeeEEEecC----------e-EEE--------------eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724 66 QSYTVNIMD----------E-HVL--------------KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG 120 (167)
Q Consensus 66 g~y~c~~~~----------~-~v~--------------~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~ 120 (167)
|.|.|..++ . .|. .-+.-.+.|..-++ |.|-++|+-+++..-.|.. ..+
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggf---P~P~~~Wle~~~~~~~~~~---~~~ 173 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF---PHPHVQWLMPEGVEPAPTA---ANG 173 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCc---CCchheeccccCCCCCCcc---ccC
Confidence 999998743 0 111 13445788996554 9999999988753322221 233
Q ss_pred eEEEccCCeEEEe-ecCcCCC-CcceEEEeeecC
Q psy12724 121 KYLVLPSGELHIR-DVGPEDG-YKSYQCRTKHRL 152 (167)
Q Consensus 121 r~~~~~~g~L~I~-~v~~~D~-~G~Y~C~a~n~~ 152 (167)
......+|+|.+. .+..... .---+|+..|.-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
T PHA03376 174 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 207 (221)
T ss_pred ceeecCCCcEEEEEEeecCCCccCceEEeccCch
Confidence 3333456665432 2222111 024577777753
No 249
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.21 E-value=0.0011 Score=45.29 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=42.3
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.++.+.|.|.+.++.. +.-.++|+||+ ..+.... ..+.++.|.+. ..|.+..-...+. ..|+|.+.+..
T Consensus 16 ~~~~~~L~C~~~gfyP-~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYP-GFATVQWKVDG-ATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKH-KVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEEC-CCCEEEEEECC-EECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCC-CeEEEEEEecC
Confidence 5788999999987632 24578999997 4542111 00112333331 2455555554456 79999999875
No 250
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.17 E-value=0.00078 Score=43.72 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.|.|.|.|. |.|+|+|++.
T Consensus 1 ~~l~C~a~G~P~---P~i~W~k~g~ 22 (77)
T cd05874 1 IVIQCEAKGKPP---PSFSWTRNGT 22 (77)
T ss_pred CEEEeeCcccCC---CeEEEEECCe
Confidence 369999999976 4899999854
No 251
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.16 E-value=0.0016 Score=43.48 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=37.6
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE-------EEeeeEEEec
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV-------VSQSYTVNIM 73 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v-------~~g~y~c~~~ 73 (167)
..++.+|.+|++++|+|...+..+ .+.|++++. .+.++.. ..+ .+|.|.|...
T Consensus 2 ~~~~~tv~~g~~v~L~C~~~s~~A----~v~W~~ng~-~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 2 PVKNRTVAPGADVVLPCQLRSNLA----SPVWLFNGT-PLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred cceEEEEecCCCEEEECCCCCCCc----cEEEEECCc-ccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 357889999999999999987654 599999855 3433211 111 2789999864
No 252
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.16 E-value=0.00059 Score=42.86 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=29.1
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE--------EEeeeEEEecCe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV--------VSQSYTVNIMDE 75 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v--------~~g~y~c~~~~~ 75 (167)
+.|+|.+.+.|.+ .+.|.|+++. +..+. ...+ ..|.|+|.+.|.
T Consensus 1 v~l~C~~~g~P~p---~v~W~k~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 58 (71)
T cd05731 1 LLLECIAEGLPTP---EISWIKIGGE-LPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNS 58 (71)
T ss_pred CEEEEEeeEecCC---eEEEEECCeE-CCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeC
Confidence 4699999998864 7999998753 22111 0111 268899988764
No 253
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.15 E-value=0.00085 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.|.|.|.|.+ .++|+|++.
T Consensus 1 i~l~C~~~G~P~P---~v~W~k~g~ 22 (77)
T cd05733 1 IVIKCEAKGNPPP---TFSWTRNGT 22 (77)
T ss_pred CEEEeeCcccCCC---eEEEEECCe
Confidence 4799999998764 899999854
No 254
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.13 E-value=0.0021 Score=43.63 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=39.3
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.|+.++|.|.+.++.. +.-.++|+||| ..+.... .++.++.|.+. ..|.|. +++. ..|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP-~~I~v~W~~~g-~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~---~~~~-~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFP-PVLNVTWLKNG-VPVTDGVSETRYYPRQDLSFQKF--SYLNFT---PEEG-DIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEEC-CcCEEEEEECC-eEccCceEEeeeEeCCCCcEEEE--EEEEEE---CCCC-CeEEEEEEeCC
Confidence 4666899999988632 22367999997 4442110 01223333332 235444 3565 79999999875
No 255
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.11 E-value=0.00094 Score=43.35 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|+|.+.|.|.+ .++|+|++.
T Consensus 1 ~~l~C~~~G~P~P---~v~W~k~g~ 22 (77)
T cd05875 1 IIIECEAKGNPVP---TFQWTRNGK 22 (77)
T ss_pred CEEEEeccccCCC---EEEEEECCE
Confidence 3799999999864 899999853
No 256
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.09 E-value=0.00085 Score=42.98 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=18.1
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|.|.|.+.+.|.+ .+.|+|++.
T Consensus 1 ~~L~C~v~g~P~p---~v~W~k~~~ 22 (76)
T cd05736 1 ASLRCHAEGIPLP---RLTWLKNGM 22 (76)
T ss_pred CEeEeEeeecCCC---EEEEEECCE
Confidence 5799999998764 799999854
No 257
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.07 E-value=0.00088 Score=53.35 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=41.5
Q ss_pred cceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 96 YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 96 p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.-|...|..+++..+. +.++..+.+.|.|.+.+.+.+|+ |.|+|..+-+.
T Consensus 11 iDP~y~W~GP~g~~l~------gn~~~nIT~TG~L~~~~F~esmS-G~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS------GNSYVNITETGKLMFKNFQESMS-GSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccC------CCCeEEEccCceEEeeccccccC-CceEEEEEEEe
Confidence 3467899988765552 45678888999999999999999 99999988765
No 258
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.04 E-value=0.0023 Score=41.20 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.4
Q ss_pred EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
..+..|+++.|.|.+.+.+. +.+.|.|++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~ 33 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPR---PTITWLKDGK 33 (85)
T ss_pred eEecCCCcEEEEEEcCCCCC---CeEEEEECCE
Confidence 34668999999999998765 4799999854
No 259
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.04 E-value=0.0023 Score=40.55 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=27.4
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ 56 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~ 56 (167)
++...+.+|+++.|.|.+.+.+. +.+.|.+++ ..+.
T Consensus 6 ~~~~~v~~g~~~~l~C~~~~~p~---~~~~w~~~~-~~~~ 41 (80)
T PF13895_consen 6 SSPQSVEEGDSVTLTCSVSGNPP---PQVQWYKNG-SPIN 41 (80)
T ss_dssp EESSEEETTSEEEEEEEEESSSS---SEEEEEETT-EEEE
T ss_pred ccceEEeCCCcEEEEEEEEcccc---eeeeeeeee-eeee
Confidence 33466899999999999997655 369999975 3444
No 260
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.01 E-value=0.0017 Score=38.64 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=20.8
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+|+++.|.|.+.+.+. +.+.|.+++.
T Consensus 1 ~g~~~~l~C~~~~~~~---~~v~W~~~~~ 26 (63)
T smart00408 1 EGQSVTLTCPAEGDPV---PNITWLKDGK 26 (63)
T ss_pred CCceEEEEeeCccCCC---CeEEEEECCE
Confidence 5899999999877664 3799999753
No 261
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.00 E-value=0.0018 Score=42.77 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.4
Q ss_pred CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 26 NAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+++.|.|.|.+.|.+. ..+.|.|++.
T Consensus 1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~ 26 (85)
T cd05854 1 ENLTLQCHASHDPTMD-LTFTWSLDDF 26 (85)
T ss_pred CcEEEEEEEecCCCCC-eEEEEEECCe
Confidence 4789999999998752 2589999853
No 262
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.99 E-value=0.0011 Score=42.78 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.4
Q ss_pred EEEeecCCCCCCcceeeEEeeCCCceeeecCCc------eE--------EEeeeEEEecC
Q psy12724 29 VFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD------FV--------VSQSYTVNIMD 74 (167)
Q Consensus 29 ~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~------~v--------~~g~y~c~~~~ 74 (167)
.|.|.+.|.|.| .+.|.|++. .+..+..+ .+ .+|.|+|.+.+
T Consensus 2 ~l~c~v~g~P~P---~v~W~kdg~-~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 2 RLTPKVKAFPAP---EVIWLKDGL-PAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred eEEeeEEEcCCC---eEEEEECCE-ECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence 689999999865 799999953 33322111 11 16889988765
No 263
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.99 E-value=0.0022 Score=43.51 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.7
Q ss_pred EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
+.+.+|+++.|.|.+++.+. +.+.|++++.+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~---~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKS---IQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCC---cEEEEEECCcE
Confidence 56789999999999987664 47999976533
No 264
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.99 E-value=0.0012 Score=42.63 Aligned_cols=22 Identities=14% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.|.+.+.|.+ .+.|+|+++
T Consensus 1 v~l~C~~~G~P~P---~v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSAEGYPPP---TIVWKHSKG 22 (79)
T ss_pred CEeEeeCeEeCCC---EEEEEECCC
Confidence 5799999998864 799999754
No 265
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.98 E-value=0.0053 Score=41.77 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=40.3
Q ss_pred EEeCCcEEEEeeeCCc-cCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 77 VLKGNSAVLKCHIPSF-VADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
+..|+.++|.|.+.++ .. +.-.++|+||++..+.... .++.++.|.+. ..|.+..-...+. -.|+|.+.+..
T Consensus 11 l~~~~~~tLtC~v~gf~yP-~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g-~~ysC~V~H~~ 86 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSP-EGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISG-DTFQCKVTHPD 86 (96)
T ss_pred hccCCCeEEEEEEeCCCCC-CCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCC-CcEEEEEECCC
Confidence 4468999999999876 22 2346799998743321110 00112223221 1344443333333 57999999875
No 266
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.97 E-value=0.0023 Score=41.90 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=19.8
Q ss_pred CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 26 NAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+++.|.|.|.+.|.+.+ .+.|.|++.
T Consensus 1 e~~~L~C~~~g~P~p~i-~~~W~~~g~ 26 (85)
T cd04970 1 ESITLQCHASHDPTLDL-TFTWSFNGV 26 (85)
T ss_pred CcEEEEEEEecCCCCCe-EEEEEECCe
Confidence 57899999998876522 479999743
No 267
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.97 E-value=0.0029 Score=43.08 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=29.3
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
.+++.+.+|++|.|.|.+.+.... .+.|++.+...+
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~---~v~w~~~~~~~i 39 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDS---VIQLLNPNRQTI 39 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCcc---EEEEEecCCcEE
Confidence 457899999999999999988754 589998875554
No 268
>PHA02633 hypothetical protein; Provisional
Probab=96.92 E-value=0.0017 Score=40.61 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred cCCeEEEeecCcCCCCcceEEEeeecC---cceEEEeeeC
Q psy12724 126 PSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSATK 162 (167)
Q Consensus 126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~~ 162 (167)
.++.|-|-++..+|+ |.|.|..+|.- ...+.|++..
T Consensus 16 ~~~nLwilpa~~sDS-GiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDS-GIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccC-cEEEEEEcCCCeeEEEEEEEEEee
Confidence 356799999999999 99999999875 4455666644
No 269
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=96.90 E-value=0.0018 Score=41.29 Aligned_cols=44 Identities=11% Similarity=0.285 Sum_probs=29.3
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE-------EEeeeEEEecCe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV-------VSQSYTVNIMDE 75 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v-------~~g~y~c~~~~~ 75 (167)
+.|.|.+.+.|.+ .+.|+|++ +.+..+. .... .+|.|+|.+.+.
T Consensus 1 ~~l~c~v~g~P~p---~v~W~k~g-~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~ 57 (71)
T cd04976 1 VRLPVKVKAYPPP---EIQWYKNG-KLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNK 57 (71)
T ss_pred CEEEeEEEEeCCC---EEEEEECC-EECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcC
Confidence 3689999998864 79999974 3443221 1111 279999988764
No 270
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.89 E-value=0.0014 Score=41.92 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=30.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCC----ceE--------EEeeeEEEecCe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----DFV--------VSQSYTVNIMDE 75 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----~~v--------~~g~y~c~~~~~ 75 (167)
+.|.|.+.|.|.+ .++|+|++. .+..+.. ..+ ..|.|+|.+.|.
T Consensus 1 ~~~~c~v~G~P~P---~v~W~k~g~-~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~ 56 (70)
T cd05864 1 VKIPVKYYGYPPP---EVKWYKNGQ-LIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNP 56 (70)
T ss_pred CEEEeEEEEeCCC---EEEEEECCE-ECCCCCEEccCCEEEECcCCHHHCEEEEEEEEEC
Confidence 3689999999875 799999854 4433211 011 279999998765
No 271
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.86 E-value=0.005 Score=41.74 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=40.7
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.++.+.|.|.+.++.. +.-.++|+||+ ..+.... ..+.++.|.+. ..|.|..-...+. ..|+|.+.+..
T Consensus 13 ~~~~~~L~C~a~gFyP-~~I~vtW~~dg-~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~-~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTP-GTIEVEWLVDG-QVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSG-KTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEEC-CCCEEEEEECC-EECcCceeecccEECCCCcEEEE--EEEEEchHHhcCC-CeEEEEEEECC
Confidence 4566999999988632 23467999997 4431110 00122233321 2455554444465 79999999875
No 272
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.77 E-value=0.0024 Score=39.18 Aligned_cols=28 Identities=14% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCcEEEEeec-CCCCCCcceeeEEeeCCCcee
Q psy12724 25 GNAAVFKCNL-PSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 25 G~~~~l~C~a-~~~~~~~~~~i~W~k~~~~~~ 55 (167)
|+++.|.|.+ .+.+. +.++|.+++....
T Consensus 1 G~~v~L~C~~~~~~~~---~~~~W~~~~~~~~ 29 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPP---TTVTWSKNGQSLP 29 (64)
T ss_dssp TSEEEEEEEEEESSST---SEEEEEETTTTTS
T ss_pred CCeEEEEeecCCCCCC---cEEEEEECCcccc
Confidence 8999999999 33333 4799999976543
No 273
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.75 E-value=0.0092 Score=40.81 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred EEEeCCcEEE-EeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 76 HVLKGNSAVL-KCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 76 ~v~~G~~a~l-~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+..|+.+.+ .|.+.+ |.|.+.|+|+++..........+..++.+.+. ..|.+..-+..|. -.++|++.+..
T Consensus 12 ~~~~g~~~~vA~C~sa~--gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G-~~vtC~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAE--GRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANG-HPLTCVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccC--CccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCC-cEEEEEEeCcc
Confidence 3457888888 999865 67999999998742111100001123344443 2577766667776 79999999875
No 274
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.73 E-value=0.0066 Score=39.73 Aligned_cols=65 Identities=26% Similarity=0.536 Sum_probs=40.8
Q ss_pred eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEe-----eeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVD-----MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~-----~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.++.+.|.|.+.++. |.. .++|++|+ ..+... ...+.++.|.+. ..|.|. ..+. ..|+|.+.+..
T Consensus 7 ~~~~~~L~C~v~~f~--P~~i~v~W~~~~-~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~~-~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFY--PKDITVTWLKNG-KEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNSG-DEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEB--SSTEEEEEEETT-EEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTTT-GGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEE--CCCcEEEEEecc-ceeeeeeeecccccccccceeee--EEEEec---CCCC-CEEEEEEEECC
Confidence 388899999998763 433 68999997 443110 001134444432 246666 5555 78999999875
No 275
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.63 E-value=0.0029 Score=42.67 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=35.5
Q ss_pred EEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCCCceeeecC------CceE-------EEeeeEEEecC
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTDGGQYQIDN------QDFV-------VSQSYTVNIMD 74 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~~~~~~~~~------~~~v-------~~g~y~c~~~~ 74 (167)
...+..|+++.|.|.+.+.... +-|.+.|+|++. .+..+. .... .+|.|+|.+.+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~-~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCK-LLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCE-ECCCCccEEecCCEEEEeeCChhhCEEEEEEEEe
Confidence 3568899999999998654321 235799999864 342211 1111 37899998864
No 276
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.63 E-value=0.012 Score=39.33 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=28.0
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
.+++.+.+|+++.|+|.+.+.+. +.+.|++.++..+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~p~~~~~ 39 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDN---SSLQWSNPNQQTL 39 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCC---ceEEEeCCCCcEE
Confidence 35788999999999999987654 4799997655443
No 277
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.62 E-value=0.01 Score=40.39 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=21.6
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeee
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEEL 110 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l 110 (167)
.++.++|-|.|.++.. +.-.++|+||+ ..+
T Consensus 15 ~~~~~tL~C~a~gFyP-~~I~v~W~kng-~~~ 44 (96)
T cd07697 15 KQGQGIYLCLLENFFP-DVIQVHWREGN-SPS 44 (96)
T ss_pred cCCCEEEEEEEEEEeC-CCeEEEEEECC-EEC
Confidence 4677999999988632 23367999997 443
No 278
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.61 E-value=0.016 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.9
Q ss_pred eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
..+.+.+|+++.|.|.+. .|. |.++|+|++
T Consensus 4 ~~~~~~eG~~v~L~C~~~-~p~---p~v~Wykq~ 33 (91)
T cd05871 4 KVVYGVENNSTFLECLPK-SPQ---ASVKWLFQR 33 (91)
T ss_pred eEEEEecCCcEEEEEECC-CCC---ceEEEEEEC
Confidence 346789999999999963 443 579999853
No 279
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=96.58 E-value=0.0055 Score=38.75 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=16.9
Q ss_pred EEEeecCC-CCCCcceeeEEeeCCC
Q psy12724 29 VFKCNLPS-FVSDHLDVVSWADTDG 52 (167)
Q Consensus 29 ~l~C~a~~-~~~~~~~~i~W~k~~~ 52 (167)
.|.|.+.+ .|. |.+.|+|++.
T Consensus 2 ~l~C~~~g~~P~---p~~~W~k~g~ 23 (75)
T cd05750 2 VLKCEATSEYPS---LRFKWFKDGK 23 (75)
T ss_pred EEEEEccCCCCC---ceEEEEcCCe
Confidence 69999998 664 4899999754
No 280
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.55 E-value=0.0087 Score=43.06 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=38.1
Q ss_pred eCCcEEEEeeeCCccCC--cceeEEEEeCCCeeeEEeeeecCCceE--------EE--ccCC--eEEEeecCcCCCCcce
Q psy12724 79 KGNSAVLKCHIPSFVAD--YVAVESWISDQGEELFVDMTESTDGKY--------LV--LPSG--ELHIRDVGPEDGYKSY 144 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~--p~p~i~W~k~~~~~l~~~~~~~~~~r~--------~~--~~~g--~L~I~~v~~~D~~G~Y 144 (167)
=+++|.|||.+...... +.-.|+|..++ ..++... ....+. .+ +..| +|.+...+.- . |+|
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~-~~If~~d--g~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~-GnY 100 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKN-KDIFIFD--GTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-E-GNY 100 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETT-EEEEEEE--TTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH---EEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECC-eEEEEEc--CccceecccCccccchhHhhCCCEEEEEcchhcc-c-cce
Confidence 48899999998642111 23458999987 4554321 111111 11 1233 5999887777 5 999
Q ss_pred EEEeeecC
Q psy12724 145 QCRTKHRL 152 (167)
Q Consensus 145 ~C~a~n~~ 152 (167)
+|.+....
T Consensus 101 TCeVt~~~ 108 (130)
T PF08204_consen 101 TCEVTELS 108 (130)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99997765
No 281
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.51 E-value=0.0091 Score=41.01 Aligned_cols=69 Identities=16% Similarity=0.367 Sum_probs=40.5
Q ss_pred EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee----e--ec--CCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724 78 LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM----T--ES--TDGKYLVLPSGELHIRDVGPEDGYKSYQCRT 148 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~----~--~~--~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a 148 (167)
..|+.+.|.|.+.++. |.. .++|+||+ ..+.... . ++ .++.|.+. ..|.|..-...+. ..|+|.+
T Consensus 14 ~~~~~~tL~C~a~gFy--P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~-~~ytC~V 87 (102)
T cd05768 14 SLQETATLTCLVKGFS--PSDIFVKWLQNG-QPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAG-DVFTCVV 87 (102)
T ss_pred CcCCceEEEEEEeeEe--CCCCEEEEEECC-EECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCC-CcEEEEe
Confidence 3578899999998862 433 57999997 4442110 0 00 01233322 2355544333455 6899999
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.+..
T Consensus 88 ~H~~ 91 (102)
T cd05768 88 GHEA 91 (102)
T ss_pred EeCC
Confidence 9875
No 282
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=96.49 E-value=0.0043 Score=40.73 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=16.5
Q ss_pred EEeecCCCCCCcceeeEEeeCCC
Q psy12724 30 FKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 30 l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.+.|.|.| .|+|+|++.
T Consensus 3 i~~~v~G~P~P---ti~W~kng~ 22 (79)
T cd05855 3 IPFTVKGNPKP---TLQWFHEGA 22 (79)
T ss_pred EEEEEeEeCCC---ceEEEECCE
Confidence 67899998864 899999953
No 283
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=96.45 E-value=0.0065 Score=39.67 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|.|.+.+.+ .+.+.|.+++.
T Consensus 1 Ge~~~L~C~~~g~~~~-~~~i~W~~~~~ 27 (84)
T cd05742 1 GETLVLNCTVLTELNE-GVDFQWTYPGK 27 (84)
T ss_pred CCeEEEEEEEEeCCCc-cEEEEEecCCc
Confidence 7899999999988432 35799987653
No 284
>PHA02982 hypothetical protein; Provisional
Probab=96.36 E-value=0.013 Score=45.50 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=49.9
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----e------e-cCCceEEEc---cCCeEEEeecCcCC
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----T------E-STDGKYLVL---PSGELHIRDVGPED 139 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~------~-~~~~r~~~~---~~g~L~I~~v~~~D 139 (167)
..+..|+.+.|.|..+. ++......|+++++..+.... . + +....|... ...+|+|.++..+.
T Consensus 34 v~a~vd~~V~L~C~~~~--~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 34 VNATVDQEVKLQCLFKD--ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhccCCCcEEEEecCCC--cchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 45568999999999764 455667799998764443110 0 0 001123222 23479999999999
Q ss_pred CCcceEEEeeecC
Q psy12724 140 GYKSYQCRTKHRL 152 (167)
Q Consensus 140 ~~G~Y~C~a~n~~ 152 (167)
. |-|+|+|....
T Consensus 112 ~-GCYtc~~ks~~ 123 (251)
T PHA02982 112 L-GCFTCEAKDAE 123 (251)
T ss_pred C-CceEEEEecCC
Confidence 8 99999998743
No 285
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.35 E-value=0.027 Score=39.70 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=47.9
Q ss_pred eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee---------eecCCceEEEccC---C--eEEEeecCcCC
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM---------TESTDGKYLVLPS---G--ELHIRDVGPED 139 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~---------~~~~~~r~~~~~~---g--~L~I~~v~~~D 139 (167)
..+..|+++.|.|.+.+. .-.. -.++|.|.-...+ ++. .+...+|+....+ + .|.|.+++.+|
T Consensus 8 ~lv~p~~sv~LsC~~sg~-~~s~e~~~~wvRq~pg~l-E~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 8 VLASSNGAASLVCEYTYN-GFSKEFRASLLKGADSAV-EVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred eEEcCCCCEEEEEEecCC-ccccEEEEEEEEeCCCCc-EEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 356679999999999654 2233 4679988532221 111 0112345544422 1 59999999999
Q ss_pred CCcceEEEeeecC
Q psy12724 140 GYKSYQCRTKHRL 152 (167)
Q Consensus 140 ~~G~Y~C~a~n~~ 152 (167)
. +.|.|.-+...
T Consensus 86 T-a~Y~Ca~e~my 97 (115)
T cd05721 86 T-DIYFCKIELMY 97 (115)
T ss_pred C-eEEEEEeeecc
Confidence 9 99999876554
No 286
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.32 E-value=0.016 Score=40.12 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=26.9
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
++++....|.+|+++.|.|.-. |.+ +..++|+|..
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~--p~~-~~~~~W~kg~ 36 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNL--PEN-LLAYAWYKGK 36 (105)
T ss_pred eEeccCCcccCCCCEEEEecCC--CCC-ceEEEEEcCC
Confidence 4566778899999999999654 433 5689999973
No 287
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=96.31 E-value=0.0084 Score=38.30 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=17.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
.+|+|.|.+..+ .+.+.|+|++. .+
T Consensus 1 ~~L~C~a~~~~p--~~~~~W~~~g~-~i 25 (76)
T cd05895 1 LVLRCETVSEYP--SLRFKWFKNGK-EI 25 (76)
T ss_pred CEEEEecccCCC--CCceEEEECCc-cc
Confidence 379999975432 24799999744 44
No 288
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=96.27 E-value=0.0066 Score=39.83 Aligned_cols=23 Identities=4% Similarity=0.175 Sum_probs=17.6
Q ss_pred EEeecCCCCCCcceeeEEeeCCCceee
Q psy12724 30 FKCNLPSFVSDHLDVVSWADTDGGQYQ 56 (167)
Q Consensus 30 l~C~a~~~~~~~~~~i~W~k~~~~~~~ 56 (167)
+.|.+.|.|.| .|+|+|++. .+.
T Consensus 3 i~~~v~G~P~P---~v~W~k~g~-~i~ 25 (81)
T cd04971 3 IPFTVRGNPKP---TLTWYHNGA-VLN 25 (81)
T ss_pred EEEEeEeeCCC---cEEEEECCE-ECc
Confidence 68999998864 899999753 443
No 289
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.17 E-value=0.022 Score=39.07 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=41.1
Q ss_pred EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724 78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~ 153 (167)
..+..|.|.|.+.++. +| .-.++|.+|++..-.... ..+.++.|.+. ..|.|..-...-. ..|+|.+.+...
T Consensus 17 ~~~~~atLtClV~~f~-~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~~~~W~~g-~~ytC~V~H~~l 90 (99)
T cd04986 17 LLGSSASLTCTLSGLR-DPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGCAEEWNKG-EPFACTVTHPEG 90 (99)
T ss_pred CcCCccEEEEEEeccC-CCCCeEEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeCHHHhcCC-CeEEEEEECCCc
Confidence 3688899999998873 23 236899999742111000 01123344332 3465553222332 459999998764
No 290
>smart00409 IG Immunoglobulin.
Probab=96.16 E-value=0.054 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=27.2
Q ss_pred eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
....+.+|+++.|.|.+.+.+. +.+.|.++++..+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~v 36 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPP---PEVTWYKQGGKLL 36 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCC---CeEEEEECCCEEc
Confidence 4567889999999999998732 4799999844444
No 291
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.16 E-value=0.054 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=27.2
Q ss_pred eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
....+.+|+++.|.|.+.+.+. +.+.|.++++..+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~v 36 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPP---PEVTWYKQGGKLL 36 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCC---CeEEEEECCCEEc
Confidence 4567889999999999998732 4799999844444
No 292
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.12 E-value=0.021 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
...+.|.|.+. ..|+|+|+. .+.+ ..+-.|.+..+...-. |.|.|.+++
T Consensus 6 ~~~V~L~C~~~-------tsi~W~kG~--~~~~------------~~~~tlnLGs~~~DPR-G~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA-------TNITWKKGK--EILE------------VSNTLLDLGSRINDPR-GTYSCKESE 54 (69)
T ss_pred CceEEEEecCC-------CcEEEecCc--cccc------------ccccEEeccCcccCCC-cceEecCcc
Confidence 44699999762 248999943 3321 1144566666666665 999999988
No 293
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.02 E-value=0.026 Score=39.09 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=24.3
Q ss_pred EEeEEEEEeCCcEEEEeecCC------CC--CCcceeeEEeeCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPS------FV--SDHLDVVSWADTD 51 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~------~~--~~~~~~i~W~k~~ 51 (167)
+.+...+.+|+.+.|+|.... +. ....-.+.|+|++
T Consensus 6 ~~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~ 49 (104)
T cd05896 6 DLKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSS 49 (104)
T ss_pred ceeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECC
Confidence 345577999999999999722 11 1111259999995
No 294
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=95.97 E-value=0.012 Score=38.65 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.0
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
|+++.|.|.+.+.+. +.+.|.+++
T Consensus 1 Ge~~~l~C~~~~~~~---~~~~W~~~~ 24 (84)
T cd05861 1 GETITVNCIVQGNEV---VDFSWTYPG 24 (84)
T ss_pred CCcEEEEEEEECCCc---cEEEEEECC
Confidence 789999999998654 579999764
No 295
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.95 E-value=0.023 Score=40.03 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=40.8
Q ss_pred eCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCC-CCcceEEEeee
Q psy12724 79 KGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKH 150 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n 150 (167)
.++.++|.|.+.++. |. -.++|+||+ ..+.... ..+.++.|.+. ..|.|..-...| . -.|+|.+.+
T Consensus 17 ~~~~~tL~Cla~gFy--P~~I~V~W~kng-~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~-~~ytC~V~H 90 (115)
T cd05769 17 NKRKATLVCLATGFY--PDHVSLSWKVNG-KEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPR-NTFTCIVQF 90 (115)
T ss_pred cCCCcEEEEEEEeEe--CCCcEEEEEECC-EECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCC-CeEEEEEEE
Confidence 467899999998763 44 378999997 4442110 00011233332 246666555433 4 589999998
Q ss_pred cC
Q psy12724 151 RL 152 (167)
Q Consensus 151 ~~ 152 (167)
..
T Consensus 91 ~g 92 (115)
T cd05769 91 YG 92 (115)
T ss_pred eC
Confidence 75
No 296
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.94 E-value=0.03 Score=37.45 Aligned_cols=75 Identities=12% Similarity=0.311 Sum_probs=43.1
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeee-cCCceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeE-
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-DNQDFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVE- 100 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~~~~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i- 100 (167)
|+.+.|.|.|.|+.++.+ .++|+|++...... ....... .|.|.... ...+..++...+.|.+... +.+.|.+
T Consensus 14 ~~~~~L~C~a~gF~P~~i-~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s-~l~v~~~~~~~ytC~V~H~-~~~~~~~~ 90 (93)
T cd07698 14 DGSLTLSCHATGFYPRDI-EVTWLRDGEDSVDDVESGEILPNGDGTYQLWV-TLEVPPEDKARYSCRVEHS-GLKEPLIV 90 (93)
T ss_pred CCcEEEEEEEEEEeCCCc-EEEEEECCEECcccccccceEECCCCeEEEEE-EEEECCCCCCEEEEEEEeC-CCCCCeEE
Confidence 788999999999644322 68999985311111 0001111 34565432 1344456778999999543 4455543
Q ss_pred EE
Q psy12724 101 SW 102 (167)
Q Consensus 101 ~W 102 (167)
.|
T Consensus 91 ~w 92 (93)
T cd07698 91 PW 92 (93)
T ss_pred eC
Confidence 56
No 297
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.90 E-value=0.042 Score=37.24 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=38.7
Q ss_pred eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.++.+.|-|.+.++.. +.-.++|+||+. . .... ..+.++.|.+. ..|.|..-..... -.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP-~~i~vtW~k~g~-~-~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLP-EPVTFTWNSGSN-S-TSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGK-ESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEEC-CCcEEEEeECCE-E-CCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCC-CcEEEEEEeCC
Confidence 4677999999988732 234679999973 3 1110 00113334332 1355444332234 58999999875
No 298
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=95.88 E-value=0.047 Score=36.01 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.3
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|.+.+.+.+ ...+.|..++.
T Consensus 1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~ 27 (86)
T cd05862 1 GEKLVLNCTARTELNV-GIDFQWDYPGK 27 (86)
T ss_pred CCcEEEEEEEEeCCCC-cEEEEEEcCCc
Confidence 7899999999876533 23589988754
No 299
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.80 E-value=0.045 Score=36.94 Aligned_cols=66 Identities=11% Similarity=0.281 Sum_probs=40.4
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPS 91 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~ 91 (167)
..|+.+.|.|.|.++-++.+ .++|+|++. .+..... ...- .|.|..... ..+..++...+.|.+.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i-~v~W~~~g~-~~~~~~~~~~~~~~~dgTy~~~s~-L~~~~~~~~~ysC~V~H 81 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEI-TVKWFKNGQ-EETEGVVSTELIPNGDWTYQILVM-LETTPSRGDTYTCVVEH 81 (94)
T ss_pred cCCCCeEEEEEEeeecCCCC-EEEEEECCe-ecCCCceecceEECCCCcEEEEEE-EEEcCCCCCEEEEEEEe
Confidence 36899999999999655433 589999854 3322100 0111 245665332 23445677799999954
No 300
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.79 E-value=0.04 Score=35.63 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=18.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQY 55 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~ 55 (167)
+.|.|.+.++.+ .+.|+|+|++ +.+
T Consensus 2 ~~L~C~v~g~~P--~~~v~W~~~g-~~l 26 (82)
T cd05759 2 YNLTCRARGAKP--AAEIIWFRDG-EVL 26 (82)
T ss_pred EEEEEEEeCccC--CCEEEEEECC-EEc
Confidence 579999988522 2479999974 344
No 301
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.79 E-value=0.012 Score=39.98 Aligned_cols=68 Identities=12% Similarity=0.283 Sum_probs=39.6
Q ss_pred EEEeCCcEEEEeecCCC--CCCcceeeEEeeCCCceeeecCC--ceEEEeeeEEEecCeEEEeC---CcEEEEeeeCC
Q psy12724 21 FVIKGNAAVFKCNLPSF--VSDHLDVVSWADTDGGQYQIDNQ--DFVVSQSYTVNIMDEHVLKG---NSAVLKCHIPS 91 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~--~~~~~~~i~W~k~~~~~~~~~~~--~~v~~g~y~c~~~~~~v~~G---~~a~l~C~~~~ 91 (167)
.+..|+.+.|.|.|.|+ |.+ + .++|.|+++........ +.--.|.|+.... ..+..+ +...+.|.+.+
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~-i-~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEG-V-NVTWTRGSGEPVKASIQPPESHNNATLSVTST-LNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCC-c-EEEEEECCeEeeeEEecccccCCCCCEEEEEE-EEeCHHHccCCCcEEEEEEC
Confidence 35568999999999999 443 3 68999987543321100 0011355665432 112222 35678898853
No 302
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.63 E-value=0.054 Score=36.67 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=43.7
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEEEeCCcEEEEeeeCCccCCccee
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAV 99 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~ 99 (167)
.|+.+.|.|.|.|+-+..+ .++|+|++. .+..+.. ... -.|.|..... ..+..++...+.|.+... +-+.|.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I-~v~W~~~g~-~~~~~~~~~~~~~~~Dgty~~~s~-L~v~~~~~~~ytC~V~H~-~l~~p~ 89 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVL-NVTWLKNGV-PVTDGVSETRYYPRQDLSFQKFSY-LNFTPEEGDIYSCIVEHW-GLETPA 89 (94)
T ss_pred CCCCeEEEEEEEEEECCcC-EEEEEECCe-EccCceEEeeeEeCCCCcEEEEEE-EEEECCCCCeEEEEEEeC-CCCCce
Confidence 3666899999999654434 589999854 3322100 011 1356665432 345567778999999543 334443
Q ss_pred E-EE
Q psy12724 100 E-SW 102 (167)
Q Consensus 100 i-~W 102 (167)
+ .|
T Consensus 90 ~~~w 93 (94)
T cd05767 90 TRYW 93 (94)
T ss_pred EEEc
Confidence 2 45
No 303
>KOG4597|consensus
Probab=95.59 E-value=0.015 Score=49.89 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=51.7
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Ceee-EEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEEL-FVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~l-~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
..+-.|+++.+.|-+.| .|.++|+|.|-- +..+ .+. ...-++-.+.+.+.|.|-|..+.|+ |-|+|.|.|.
T Consensus 206 w~vg~wetcS~tCg~~G---~q~r~V~c~qv~anr~~vv~~~--nq~~e~p~vtstcql~ic~ewq~~a-~w~tCs~rcg 279 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQG---RQYRVVTCEQVFANRENVVMRP--NQTVENPVVTSTCQLVICNEWQADA-GWYTCSARCG 279 (560)
T ss_pred hhcccchhhcccccccC---CcCceeeeehhhccccceeecC--ccccCCcceeeeeeEEEcchhhcCC-Cceeeccccc
Confidence 35678999999999875 488999998621 1222 110 0112344555567899999999999 9999999998
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
.
T Consensus 280 ~ 280 (560)
T KOG4597|consen 280 A 280 (560)
T ss_pred c
Confidence 6
No 304
>KOG3515|consensus
Probab=95.37 E-value=0.014 Score=52.99 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=51.7
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.+..|+++.|+|.+.+ ++|.+.+.|++.+. .+ .+|+....+..|...+.....- +.|.|.|.|..
T Consensus 18 ~~~~g~~v~l~C~v~~--~pp~~~~eW~h~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~c~a~ns~ 82 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNS--NPPEIDVEWYHSTS-GE--------HGRYATIADPTLVTTGDVRDTV-AELNCRAFNSV 82 (741)
T ss_pred hhccCCcceeeeecCC--CCCCcceEEEecCc-cc--------ccccccccCCceeeecchhhhh-hhhhhhhcccc
Confidence 5678999999999986 56788999999873 32 2566666777888888777774 99999999984
No 305
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=95.34 E-value=0.033 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=25.7
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.+.|. ..|.+|+++.|+|.+... . ....|+|++.
T Consensus 5 L~a~p~-~vV~~G~~VtL~C~~~~~-~---~~f~l~k~g~ 39 (91)
T cd05751 5 LWAEPS-SVVPLGKPVTLRCQGPYG-A---VEYRLYREGS 39 (91)
T ss_pred EEecCC-CccCCCCcEEEEEecCCC-C---CEEEEEECCC
Confidence 445553 678999999999998633 2 3688998854
No 306
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.13 E-value=0.079 Score=35.80 Aligned_cols=65 Identities=8% Similarity=0.176 Sum_probs=40.0
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE---EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV---VSQSYTVNIMDEHVLKGNSAVLKCHIPS 91 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v---~~g~y~c~~~~~~v~~G~~a~l~C~~~~ 91 (167)
..|+...|.|.|.|+-++.+ .++|+|++. .+. +... .+ -.|.|+.... ..+..++...+.|++..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i-~v~W~~dg~-~~~-~~~~~~~~p~~d~tyq~~s~-l~~~~~~~~~ysC~V~H 81 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDI-EIRLLKNGV-KIP-KVEQSDLSFSKDWTFYLLKS-TEFTPTKGDEYACRVRH 81 (93)
T ss_pred cCCCceEEEEEEEEEeCCCC-EEEEEECCE-ECC-CcEECcEEECCCCCEEEEEE-EEECCCCCCeEEEEEEE
Confidence 34777899999999644323 589999854 332 2110 01 1356665432 33446778889999954
No 307
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.06 E-value=0.096 Score=35.92 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=40.9
Q ss_pred EEEeCCcEEEEeeeCCccCCcc--eeEEEEeCCCeeeEEeee-ecCCceEEEccCCeEEEeecCcCCCCc-ceEEEeeec
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYV--AVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTKHR 151 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~--p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~n~ 151 (167)
...+|..+++.|.+++. .|. ..+.|+|++ ..+..... +..+.+-.....-.+.+.- ..+|- | .|+|.|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v--~P~~~l~v~LlkG~-~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~-g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDV--YPFDRLEIELLKGE-TLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDI-GKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCc--ccCCceEEEEecCc-ceecccccccccccCCCCCcceeEEEec-chhhC-CcEEEEEEEEe
Confidence 34689999999999864 344 578999876 34321100 0000000000112455555 47775 7 999999865
Q ss_pred C
Q psy12724 152 L 152 (167)
Q Consensus 152 ~ 152 (167)
+
T Consensus 86 l 86 (99)
T cd07689 86 I 86 (99)
T ss_pred e
Confidence 4
No 308
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.51 E-value=0.037 Score=37.95 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ceEE----EeeeEEEecCeEEEe---CCcEEEEeeeCC
Q psy12724 22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DFVV----SQSYTVNIMDEHVLK---GNSAVLKCHIPS 91 (167)
Q Consensus 22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~v~----~g~y~c~~~~~~v~~---G~~a~l~C~~~~ 91 (167)
+..|+.+.|.|.|.|+-+..+ .++|+|++. .+..... .... .|.|+.... ..+.. .+...+.|.+.+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i-~v~W~k~g~-~~~~~~~~~~~~~~~~~~dgTy~~~s~-L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDI-FVKWLQNGQ-PLSKQKYVTTAPMQEPGGNESYFLYSK-LTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCC-EEEEEECCE-ECCcccccccCcccccCCCCeEEEEEE-EEEcHHHhcCCCcEEEEeEe
Confidence 445789999999999755433 589999854 2321110 0111 277876543 23333 245789999854
Q ss_pred ccCCccee
Q psy12724 92 FVADYVAV 99 (167)
Q Consensus 92 ~~~~p~p~ 99 (167)
. +-|.|.
T Consensus 90 ~-~l~~~l 96 (102)
T cd05768 90 E-ALPLQL 96 (102)
T ss_pred C-CCCchh
Confidence 3 334443
No 309
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=94.47 E-value=0.19 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=32.9
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEEeeeEEE--ecCeEEEeCCcEEEEeeeC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVN--IMDEHVLKGNSAVLKCHIP 90 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~g~y~c~--~~~~~v~~G~~a~l~C~~~ 90 (167)
+.|.|.+.+.-++ +.|+|+|++. .+..........+.|+.. ..-.....-+...|.|+|.
T Consensus 2 ~~L~C~s~~skP~--a~i~W~k~~~-~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~ 63 (80)
T cd05885 2 VELTCLSPRSKPA--ATLRWYRDRK-ELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEAS 63 (80)
T ss_pred EEEEEeCCCccCC--CeEEEEECCE-ECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEE
Confidence 6899999876443 6899999964 443211000001223211 0112334567788889884
No 310
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=94.00 E-value=0.041 Score=33.99 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=16.5
Q ss_pred EEEEeecCCCCCCcceeeEEe
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWA 48 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~ 48 (167)
+.|.|.+.+.+.+ +.++|.
T Consensus 18 ~~l~C~~~~~~~~--~~~~W~ 36 (75)
T PF13927_consen 18 VTLTCSAEGGPPP--PSISWY 36 (75)
T ss_dssp EEEEEEESSEESS--EEEEEE
T ss_pred EEEEEEEccccCC--eEEEEE
Confidence 9999999998753 589999
No 311
>PHA03042 CD47-like protein; Provisional
Probab=93.82 E-value=0.24 Score=39.91 Aligned_cols=62 Identities=11% Similarity=0.278 Sum_probs=38.0
Q ss_pred eCCcEEEEeeeCCccCC--cceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 79 KGNSAVLKCHIPSFVAD--YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 79 ~G~~a~l~C~~~~~~~~--p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
=.+++.++|.+...... -.-.+.|+.|+ ..++.. ++. ...+|.......-+ |+|+|.|.+..
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~-----n~t----n~aSL~~~f~~~l~--GNYTCEv~~l~ 93 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKK-----NNT----NTSSLKFNFSKNLS--GNYTCEAINKF 93 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEe-----cCC----cceEEEEeccccCC--CceeEEEeecc
Confidence 37889999998531011 13357999997 455421 111 11346666555554 99999998865
No 312
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=93.81 E-value=0.29 Score=34.12 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=39.3
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EE-eeeEEEecCe-EEEeCC-cEEEEeeeCC
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VS-QSYTVNIMDE-HVLKGN-SAVLKCHIPS 91 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~-g~y~c~~~~~-~v~~G~-~a~l~C~~~~ 91 (167)
......|+.+.|.|.|.++-+.. -.++|+|++. .+.. +...+ .. +.|+....=. ....++ ...+.|.+.+
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~-i~v~W~kng~-~~~~-~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H 90 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRD-ITVKWLKNGN-ELSA-EQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQH 90 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCC-CEEEEEECCE-ECcc-cccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEe
Confidence 34456788999999999975432 3689999743 3322 11111 12 4676543211 112222 2569999854
No 313
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=93.62 E-value=0.22 Score=35.56 Aligned_cols=39 Identities=8% Similarity=0.200 Sum_probs=27.3
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
..+.+.+....+|+.+.|.|.|.++.++ ...|.|+|++.
T Consensus 41 v~~~~~~~~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~ 79 (139)
T cd05771 41 VRLSLEKLVSMIEEPQTLICHIAGYYPL-DVQVEWTREPP 79 (139)
T ss_pred eEEeCCCceeecCCcEEEEEEECCCCCC-CeEEEEEECCC
Confidence 3344444445579999999999997432 14699999864
No 314
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=93.48 E-value=0.071 Score=34.72 Aligned_cols=64 Identities=14% Similarity=0.321 Sum_probs=38.9
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eE--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FV--VSQSYTVNIMDEHVLKGNSAVLKCHIPS 91 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~ 91 (167)
++.+.|.|.|.++-++.+ .|+|++++. .+...... .. -.|.|..... ..+..++...+.|.+..
T Consensus 8 ~~~~~L~C~v~~f~P~~i-~v~W~~~~~-~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ysC~V~H 75 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDI-TVTWLKNGK-EVTEGVETTPPPPNSDGTYSVTSS-LTVTWNSGDEYSCRVTH 75 (83)
T ss_dssp TSEEEEEEEEEEEBSSTE-EEEEEETTE-EETTTEEEEEEEEETTSEEEEEEE-EEEETTTTGGEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCc-EEEEEeccc-eeeeeeeecccccccccceeeeEE-EEecCCCCCEEEEEEEE
Confidence 789999999999755434 599999854 33211000 11 1356665432 23345667788999853
No 315
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=93.44 E-value=0.6 Score=32.72 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=24.5
Q ss_pred EeEEEEEeCCcEEEEeecCCCC-CCcceeeEEee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFV-SDHLDVVSWAD 49 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~-~~~~~~i~W~k 49 (167)
+.++.+..|+++.|.|...+.. ......|.|..
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 4567899999999999997653 11246899943
No 316
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=93.23 E-value=0.14 Score=35.04 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=27.1
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
+.|....|.+|+++.|.|.+.+ +. +.+.|+|..
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~---~~v~Wykq~ 35 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GH---DNMYWYRQD 35 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CC---CEEEEEEEC
Confidence 4677889999999999999987 32 469999874
No 317
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.21 E-value=0.14 Score=34.79 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=28.3
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
....|....+.+|+++.|.|.+.+.... ..+.|+|..
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~--~~~~Wyrq~ 39 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSS--NYLAWYQQK 39 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCC--CcEEEEEEC
Confidence 3456778899999999999999765421 359999763
No 318
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=92.76 E-value=0.18 Score=34.07 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.6
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
..+....+.+|+++.|.|.+++.+. +.+.|+|..
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~---~~v~W~k~~ 36 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTF---YYLFWYRQY 36 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCc---cEEEEEEEC
Confidence 4677889999999999999987633 469999853
No 319
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=92.66 E-value=0.27 Score=31.35 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=34.6
Q ss_pred cEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEE---EeCCcEEEEeeeC
Q psy12724 27 AAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHV---LKGNSAVLKCHIP 90 (167)
Q Consensus 27 ~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v---~~G~~a~l~C~~~ 90 (167)
.+.|.|.|.++-++. ..++|+|++. .+..... ..+ -.|.|+.... ..+ ..+....+.|.+.
T Consensus 1 ~~~L~C~a~gf~P~~-i~v~W~k~g~-~~~~~~~~~~~~~~~~gt~~~~s~-L~v~~~~~~~~~~~tC~V~ 68 (75)
T smart00407 1 KATLVCLVSGFYPPD-ITVTWLRNGQ-EVTSGVSTTDPLKNSDGTYFLSSY-LTVSASTWESGDTYTCQVT 68 (75)
T ss_pred CeEEEEEEEeEeCCC-CEEEEEECCE-ECCCCEEECceEECCCCCEEEEEE-EEEccccCCCCCEEEEEEE
Confidence 368999999974332 3699999743 2221100 011 1455664321 122 3467789999985
No 320
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=92.53 E-value=1.8 Score=28.14 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=33.6
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEE---E-eeeEEEecCe--EEEeCCcEEEEeeeC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVV---S-QSYTVNIMDE--HVLKGNSAVLKCHIP 90 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~---~-g~y~c~~~~~--~v~~G~~a~l~C~~~ 90 (167)
+.|.|.|.++-++ ..|+|+|++. .+... ...+. . |.|+....=. .....+...+.|.+.
T Consensus 2 ~~LtC~a~g~~P~--~~ItW~k~g~-~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~ 66 (83)
T cd07705 2 AKLRCTSSGSKPA--ANIKWRKGDQ-ELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVG 66 (83)
T ss_pred EEEEEEecCccCC--CEeEEEECCE-ECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEE
Confidence 6899999987433 3899999853 33221 11111 1 3454332111 112456689999985
No 321
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=92.40 E-value=0.14 Score=33.69 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=36.8
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-c-eE--EEeeeEEEecCeEEEeC---CcEEEEeeeC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-D-FV--VSQSYTVNIMDEHVLKG---NSAVLKCHIP 90 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~-~v--~~g~y~c~~~~~~v~~G---~~a~l~C~~~ 90 (167)
..|+.+.|.|.|.++.++ ...|+|++++. .+..... . .. ..|.|+.... ..+... ....+.|.+.
T Consensus 11 ~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~-~~~~~~~~~~~~~~~~gt~~~~s~-l~v~~~~~~~~~~y~C~v~ 82 (95)
T cd00098 11 LLGGSVTLTCLATGFYPP-DITVTWLKNGK-ELTSGVTTTPPVPNSDGTYSVSSQ-LTVSPSDWNSGDTYTCVVT 82 (95)
T ss_pred HcCCCeEEEEEEeeEECC-CcEEEEEECCE-ECCCceeccccccCCCCCEEEEEE-EEECHHHhCCCCCEEEEEE
Confidence 468999999999998432 13699999743 3322111 0 01 1344554221 122233 6677888874
No 322
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=92.37 E-value=0.22 Score=34.17 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.7
Q ss_pred eeeEEeEEEEEeCCcEEEEeecCCCCCCccee--eEEeeCCC
Q psy12724 13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDV--VSWADTDG 52 (167)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~--i~W~k~~~ 52 (167)
....+....+.+|+...|.|.++|..+. +. |.|+|++.
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~--a~L~i~W~rG~~ 43 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPR--QNLTVVLLRGNE 43 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCC--CcEEEEEeeCCE
Confidence 3445566678999999999999986432 33 79999864
No 323
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=91.94 E-value=0.61 Score=32.09 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=26.6
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
...|-.|++..|.|.+.++|++ ..+.|.++..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p--~~~~W~~~~~ 43 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKP--EHQQWIYMNR 43 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCC--eeeEEEcCCc
Confidence 4668999999999999999975 3489998843
No 324
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=91.68 E-value=0.23 Score=34.15 Aligned_cols=34 Identities=9% Similarity=0.353 Sum_probs=26.7
Q ss_pred eEEeEEEEEeCCcEEEEeecCC--CCCCcceeeEEeeCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPS--FVSDHLDVVSWADTD 51 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~--~~~~~~~~i~W~k~~ 51 (167)
+.|..+.+.+|+++.|.|.+.+ .+. +.+.|+|..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~---~~v~Wyrq~ 38 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFST---TYIHWYRQK 38 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccc---cEEEEEEEC
Confidence 4567788999999999999877 333 479999863
No 325
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=91.44 E-value=0.51 Score=29.82 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=28.6
Q ss_pred EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecC
Q psy12724 22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMD 74 (167)
Q Consensus 22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~ 74 (167)
-+.|.+++|.|.-.+ . .|.|.+++. .+..++...+ ..|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~--~----~i~W~~n~~-~~~g~~~~~~~~~~~e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSG--D----DIKWKKNDQ-VSQGSDEKYLSLNHFSSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCC--C----CceEEeCCc-cCCCCCceEEeeccCCCCceEEEEeCC
Confidence 478999999997542 2 289999963 2222212221 26788887753
No 326
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=91.41 E-value=0.64 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=35.3
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCCc--------eEEEeeeEEEe
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQD--------FVVSQSYTVNI 72 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~~--------~v~~g~y~c~~ 72 (167)
+..+..|++..|.|++++.+.| -+.|.|...+++.... .+.. ...+|.++|.+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p-~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V 70 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLP-AFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIV 70 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCC-CccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEE
Confidence 5679999999999999765432 2479999876653321 1111 11378888887
No 327
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=90.93 E-value=1.5 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=33.0
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEEE---eCCcEEEEeeeC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHVL---KGNSAVLKCHIP 90 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v~---~G~~a~l~C~~~ 90 (167)
+.|.|.+.++-++ ..|+|+|++. .+........ ..|.|+.... ..+. ..+...+.|++.
T Consensus 2 ~~LtC~a~gf~P~--~~itW~kng~-~l~~~~~~~~~~~~~~t~~~~s~-L~~~~~~~d~g~~ytC~v~ 66 (83)
T cd05884 2 MQLTCKTSGSKPA--ADIRWFKNDK-EIKDVKYLKEEDANRKTFTVSST-LDFRVDRSDDGVAIICRVD 66 (83)
T ss_pred EEEEEEeCCccCC--CEEEEEECCE-ECcCceeeEeeCCCCCEEEEEEE-EEEEcccccCCCEEEEEEe
Confidence 5799999986543 5799999854 3321100000 1244543221 1122 456788999985
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=90.72 E-value=0.55 Score=30.56 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=21.1
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQ 54 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~ 54 (167)
|+.+.+.|.+.+.-++ +.|+|..+++..
T Consensus 14 ~~~~~~~C~s~~~~P~--~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPP--PQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS---EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECC--eEEEEEECCCce
Confidence 5699999988665433 689999997644
No 329
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.64 E-value=1.6 Score=29.22 Aligned_cols=68 Identities=13% Similarity=0.296 Sum_probs=43.4
Q ss_pred ecCeEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe--EEEeecCcCCCCcceEEE
Q psy12724 72 IMDEHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE--LHIRDVGPEDGYKSYQCR 147 (167)
Q Consensus 72 ~~~~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~--L~I~~v~~~D~~G~Y~C~ 147 (167)
++...+..|++++..|....... .....|.|.-|+ ..+ .+++|....++. ..+.+.....+ -.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~-~~i-------P~~qy~~in~~~SsVT~~~~~~~~~-~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNG-EKI-------PGSQYRVINDTVSSVTLPNLNPTGA-TLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSS-CES-------TCGCEEEESTTEEEEEESS--SSEE-EEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECC-EEC-------ChhHcceeCCeEEEEEEccCCCCCc-eEEEEE
Confidence 45567889999999999853211 356688999887 443 367888888875 55556555554 567776
Q ss_pred e
Q psy12724 148 T 148 (167)
Q Consensus 148 a 148 (167)
-
T Consensus 81 l 81 (89)
T PF06328_consen 81 L 81 (89)
T ss_dssp E
T ss_pred E
Confidence 3
No 330
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=89.95 E-value=0.44 Score=32.28 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=21.7
Q ss_pred EEEEeCCcEEEEeec-CCC-CCCcceeeEEeeCCC
Q psy12724 20 VFVIKGNAAVFKCNL-PSF-VSDHLDVVSWADTDG 52 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a-~~~-~~~~~~~i~W~k~~~ 52 (167)
..+..|.++.|.|.- ..+ .....|.+.|+||+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~ 39 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSV 39 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCE
Confidence 457789999999972 222 011134799999953
No 331
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=89.69 E-value=0.6 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
.+.+..+.+.+|+++.|.|........ ..+.|+|.
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~--~~v~Wyrq 37 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTN--YYIFWYKQ 37 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCc--eEEEEEEE
Confidence 456778889999999999998764322 36999986
No 332
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=89.14 E-value=0.49 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.8
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
.|.+|+++.|.|.+.+... ...+.|.|..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFS--SYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcC--cceEEEEEEC
Confidence 5789999999999987622 2469999864
No 333
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.90 E-value=1.7 Score=36.27 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=17.3
Q ss_pred cEEEEeeeCCccCCcceeEEEEeC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISD 105 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~ 105 (167)
.+.|.|.|.|+.. ..-.++|.||
T Consensus 216 ~~tL~C~A~GFYP-~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYP-SSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeC-CccEEEEEec
Confidence 5799999988732 2336699999
No 334
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=88.67 E-value=2.2 Score=36.42 Aligned_cols=74 Identities=14% Similarity=0.292 Sum_probs=48.1
Q ss_pred EEEeCCcEEEEeeeCCccCC-cceeEEEEeCCCeeeEEee--------ee---cCCceEEEcc---------CCeEEEee
Q psy12724 76 HVLKGNSAVLKCHIPSFVAD-YVAVESWISDQGEELFVDM--------TE---STDGKYLVLP---------SGELHIRD 134 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~~~l~~~~--------~~---~~~~r~~~~~---------~g~L~I~~ 134 (167)
.+..|..+.|+|..+.- |+ -...++|...+ .++-|.+ .+ ..+..|.+.. +.+|+|.+
T Consensus 275 ~~~~g~~v~~~c~~s~~-~~e~i~~~~w~~t~-~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 275 MLEVGKRVDIECFFSMC-GNENISNAKWIDTG-FEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred EeccCcEEEEEEEEeec-CCcccccceEEecC-CcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 44569999999987532 32 35567998765 4443222 00 0123344432 34799999
Q ss_pred cCcCCCCcceEEEeeecC
Q psy12724 135 VGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~ 152 (167)
+..+.+ |-|.|+|...-
T Consensus 353 a~I~N~-GCY~~~a~~g~ 369 (500)
T PHA02914 353 AHINNA-GCYEAQAFMGK 369 (500)
T ss_pred EEEEcC-CceEEEEecCc
Confidence 999999 99999998653
No 335
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=87.80 E-value=0.82 Score=31.13 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.|.+|+++.|.|.+.+.... ..+.|+|.+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~--~~~~Wyrq~~ 31 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISEN--TRIYWLRWRQ 31 (107)
T ss_pred EEcCCCCEEEEEEEecCCCC--CeEEEEEECC
Confidence 57899999999998764322 3699998643
No 336
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=87.78 E-value=0.74 Score=31.99 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=25.0
Q ss_pred CceEEEc-cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 119 DGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 119 ~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
..|+.+. .+..|.|..+++.|+ |.|.-..+|..
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDS-G~Y~LEvT~~s 94 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDS-GLYCLEVTNES 94 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG--EEEEEEEEETT
T ss_pred cceEeeeccCceEEEeecCcccC-ceEEEEEEcCC
Confidence 3567655 466899999999999 99999888854
No 337
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=86.81 E-value=1.5 Score=29.03 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.4
Q ss_pred eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
...+..+.+.+|+++.|.|... . ......+.|.+.+
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~ 40 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQS 40 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEEC
Confidence 3457788999999999999998 2 2223579999853
No 338
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=86.76 E-value=1.3 Score=30.58 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=25.3
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADT 50 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~ 50 (167)
.|..+.+.+|+++.|.|..+.... .....+.|.+.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~ 39 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ 39 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence 366788999999999998865431 11246999764
No 339
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=86.65 E-value=0.99 Score=29.20 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=31.9
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEE---EeCCcEEEEeeeC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHV---LKGNSAVLKCHIP 90 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v---~~G~~a~l~C~~~ 90 (167)
+.|.|.+.+.-++ +.|+|+|++. .+.... ... ..|.|+.... ..+ ...+...+.|.+.
T Consensus 2 ~~L~C~~~~~~P~--~~v~W~~~~~-~l~~~~-~~~~~~~~~~~~~~s~-l~~~~~~~d~g~~~~C~v~ 65 (82)
T cd05761 2 VELTCTSSGSKPA--ATIRWFKGDK-ELKGVK-LKEEDENGKTFTVTSS-LRFQVDREDDGAPIICRVD 65 (82)
T ss_pred EEEEEEecCcCcC--CeEEEEECCE-EccCce-eeEecCCCCEEEEEEE-EEEEcchhhCCCEEEEEEe
Confidence 6899999887332 4899999853 443211 111 1234443211 111 2345578999984
No 340
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=85.98 E-value=0.74 Score=31.22 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=21.4
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
..++.+.|.|.|.++-++.+ .++|+|++
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I-~v~W~kng 41 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVI-QVHWREGN 41 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCe-EEEEEECC
Confidence 34678999999999655434 58999984
No 341
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=85.86 E-value=0.72 Score=31.27 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=38.5
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEEEeC---CcEEEEeeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHVLKG---NSAVLKCHIPS 91 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v~~G---~~a~l~C~~~~ 91 (167)
.+++.+.|.|.|.|+-++.+ .|+|++++. .+..+.. ... ..|.|+.... ..+... +...+.|.+..
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i-~v~W~~~g~-~~~~~~~~~~~~~~~dgty~~~s~-L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFA-TVQWKVDGA-TVSSGVQTSTTEQQSDNTYSLSSY-LTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred ccCCCcEEEEEEEeEECCCC-EEEEEECCE-ECcccEeccccEECCCCCEEEEEE-EEEcHHHhCCCCeEEEEEEe
Confidence 36788999999999654334 589999853 3322100 011 1466775432 122222 35789999853
No 342
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=85.86 E-value=1 Score=30.03 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=24.7
Q ss_pred eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
....|.+|+++.|+|...... ....|+|++..
T Consensus 8 p~~vV~~G~~VTL~C~~~~~~----~~f~l~k~g~~ 39 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDIRF----DRFILYKEGRS 39 (94)
T ss_pred CCCccCCCCeEEEEEecCCCC----CEEEEEECCCC
Confidence 357889999999999887532 25899998653
No 343
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=85.44 E-value=1.3 Score=29.25 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=18.4
Q ss_pred EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 28 AVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 28 ~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
+.|.|.+.|+-++ ..|+|+|++.
T Consensus 2 ~~L~C~s~gSkP~--A~I~W~k~~~ 24 (82)
T cd05883 2 IELNCTAMASKPA--ATIRWFKGNK 24 (82)
T ss_pred EEEEEEecCCCCC--CEEEEEECCE
Confidence 5799999887544 6899999864
No 344
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=85.10 E-value=1.1 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=20.4
Q ss_pred eCCcEEEEeecCCCC---CCcceeeEEeeCC
Q psy12724 24 KGNAAVFKCNLPSFV---SDHLDVVSWADTD 51 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~---~~~~~~i~W~k~~ 51 (167)
+|+++.|.|..+..+ ......|.|.|.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 599999999987653 1223469999974
No 345
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=85.07 E-value=2 Score=28.44 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=22.7
Q ss_pred EEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
+.+.+|+++.|.|....... ...+.|.|.+
T Consensus 2 v~~~~G~~vtl~C~~~~~~~--~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNR--SYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCC--CcEeEeECCC
Confidence 46889999999999875322 2468999874
No 346
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=84.81 E-value=0.63 Score=31.32 Aligned_cols=28 Identities=11% Similarity=0.367 Sum_probs=21.0
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
..+.+.|.|.|.++-++.+ .|+|+|++.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I-~vtW~~dg~ 40 (94)
T cd05847 13 TSETIQLLCLISGYTPGTI-EVEWLVDGQ 40 (94)
T ss_pred CCCCEEEEEEEEeEECCCC-EEEEEECCE
Confidence 4577999999999654434 589999853
No 347
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=84.68 E-value=1.8 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=23.8
Q ss_pred EeEEEEEeCCcEEEEeecCCCCC-CcceeeEEee
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWAD 49 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k 49 (167)
+..+.+.+|+++.|.|.....+. .....|.|.+
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 56788999999999999765432 1123699964
No 348
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=84.64 E-value=2 Score=35.79 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=17.8
Q ss_pred cEEEEeecCCCCCCcceeeEEeeC
Q psy12724 27 AAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 27 ~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
.+.|.|.|.|+=+..+ .++|+|+
T Consensus 216 ~~tL~C~A~GFYP~~I-~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSV-AAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCcc-EEEEEec
Confidence 4699999999754433 5899999
No 349
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=84.63 E-value=2 Score=28.52 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.7
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|...+........+.|+|.+.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~ 28 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQF 28 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCC
Confidence 7899999998644322234699999754
No 350
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=84.62 E-value=1.1 Score=30.28 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=38.2
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCC---cEEEEeeeCC
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGN---SAVLKCHIPS 91 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~---~a~l~C~~~~ 91 (167)
.++.+.|.|.|.++-+..+ .++|+|++.. ..... -.+. .|.|+.... ..+..++ ...+.|++..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i-~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~-L~v~~~~w~~~~~ytC~V~H 85 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPV-TFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQ-LTVPASEWKGKESFYCKVEH 85 (95)
T ss_pred CCCcEEEEEEEeeEECCCc-EEEEeECCEE--CCCcEECCCEeCCCCCEEEEEE-EEEeHHHcCCCCcEEEEEEe
Confidence 5678999999999755433 5899998542 21100 0111 366775432 2344443 6778999864
No 351
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=84.25 E-value=1 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=21.8
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
.|.+|+++.|.|...+.... ...+.|+|..
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~-~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTGSSGNIS-GNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcC-CCCEEEEEEC
Confidence 57899999999998764211 1359998764
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=83.84 E-value=1.4 Score=30.61 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.7
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
++|....+.+|+++.|.|........ ...+.|+|..
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~-~~~~~WYkQ~ 37 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFT-SYGVNWVRQA 37 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcc-cceEEEEEEC
Confidence 35677889999999999987643210 1258999863
No 353
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=82.14 E-value=1.7 Score=29.49 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.3
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
.|.+|+++.|.|...+... ..+.|+|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~---~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSP---TGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCC---CcEEEEEeC
Confidence 4678999999999865532 259999864
No 354
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=82.06 E-value=1.7 Score=29.21 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=20.3
Q ss_pred eCCcEEEEeecCCCCC---CcceeeEEeeC
Q psy12724 24 KGNAAVFKCNLPSFVS---DHLDVVSWADT 50 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~---~~~~~i~W~k~ 50 (167)
+|+++.|.|.....+. .....|.|.|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 5999999999876531 12357999997
No 355
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=81.24 E-value=3.2 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=25.1
Q ss_pred EEeEEEEEeCCcEEEEeecCCCC---CCcceeeEEeeCC
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFV---SDHLDVVSWADTD 51 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~---~~~~~~i~W~k~~ 51 (167)
.|+.+.+.+|+++.|.|...... .+....+.|+|.+
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 46778999999999999764221 1112358999874
No 356
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=80.74 E-value=4.6 Score=30.89 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=26.6
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.....+.|.+|+++.|.|.-... . ..+.|+|+|...
T Consensus 20 s~~~~v~V~ege~VtLsCs~t~s-~-~~~qVtWkK~~~ 55 (189)
T PHA02987 20 SCFVKITVSEHVNVKISCNKTSS-F-NSILITWKKNNK 55 (189)
T ss_pred ceeEEEEEcCCCCEEEEEecCCC-C-ccceEEEEEcCC
Confidence 45567889999999999997422 1 135799999743
No 357
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=80.24 E-value=1.6 Score=30.57 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=43.8
Q ss_pred eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ceEE--EeeeEEEecCeEEEeC----CcEEEEeeeCCccC
Q psy12724 24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DFVV--SQSYTVNIMDEHVLKG----NSAVLKCHIPSFVA 94 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~v~--~g~y~c~~~~~~v~~G----~~a~l~C~~~~~~~ 94 (167)
+++.+.|.|.|.++-++.+ .++|+|++. .+..... .... .|.|+.... ..+..+ ....+.|.+.+. +
T Consensus 17 ~~~~~tL~Cla~gFyP~~I-~V~W~kng~-~l~~g~~~~~~~~~~~~gTYs~~S~-L~v~~~~w~~~~~~ytC~V~H~-g 92 (115)
T cd05769 17 NKRKATLVCLATGFYPDHV-SLSWKVNGK-EVTDGVATDPQALRENTSTYSISSR-LRVSATEWFNPRNTFTCIVQFY-G 92 (115)
T ss_pred cCCCcEEEEEEEeEeCCCc-EEEEEECCE-ECCCCcccccceecCCCCeEEEEEE-EEEChHHhccCCCeEEEEEEEe-C
Confidence 5678999999999754423 589999853 3322110 0111 156775432 223332 257899998643 3
Q ss_pred CcceeEEEEeC
Q psy12724 95 DYVAVESWISD 105 (167)
Q Consensus 95 ~p~p~i~W~k~ 105 (167)
.+. ...|..-
T Consensus 93 ~~~-~~~~~~~ 102 (115)
T cd05769 93 GTD-TDKWQSI 102 (115)
T ss_pred Ccc-ceeeeee
Confidence 232 3477643
No 358
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=79.89 E-value=2.3 Score=27.90 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=19.9
Q ss_pred CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 26 NAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
++|.|.|...+........|.|.|.+.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~ 27 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITG 27 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECC
Confidence 579999998776532345799999754
No 359
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=79.43 E-value=1.4 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.625 Sum_probs=23.7
Q ss_pred EEeCCcEEEEeecCCCC-CCcceeeEEeeCCCc
Q psy12724 22 VIKGNAAVFKCNLPSFV-SDHLDVVSWADTDGG 53 (167)
Q Consensus 22 v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~~~~ 53 (167)
...++++.|.|.+.++- ...+ .++|.++++.
T Consensus 16 l~~~~~atLtClV~~f~~P~~i-~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGA-VFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCe-EEEEEECCcc
Confidence 44688999999999965 4334 5999998653
No 360
>PHA03052 Hypothetical protein; Provisional
Probab=76.59 E-value=6.3 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=25.2
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeee
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL 110 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l 110 (167)
..+..|+++.+.|++.=..+...+.+.|.-|+ ..+
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~-~~~ 41 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNG-MYY 41 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCC-cEE
Confidence 35678999999999842113346788999997 454
No 361
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=76.59 E-value=3.2 Score=26.84 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=19.5
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|...... ...|.|.+.+.
T Consensus 1 G~~VtL~c~~~~~~---~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPEN---LQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCC---CEEEEEECCCC
Confidence 88999999887633 35799999753
No 362
>PHA03270 envelope glycoprotein C; Provisional
Probab=75.31 E-value=30 Score=29.93 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=47.2
Q ss_pred EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE-EeeeecCCceEEEccCCeEEEeecCcCCCCc------ceEEEe
Q psy12724 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF-VDMTESTDGKYLVLPSGELHIRDVGPEDGYK------SYQCRT 148 (167)
Q Consensus 76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~-~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G------~Y~C~a 148 (167)
.+++|+.=.-.|.+..|...-...++|++|++ ++. +.. .........+|.-.++-+..++. + +.+|.+
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~-~V~~~~~---i~~~~~~~~dGfs~vStvtsea~-~~~~~PPsLrC~v 304 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGD-EVFAPER---VRTRVDAQRDGFSATSTLTSEAR-AGLAPPRNLTCEF 304 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCc-cccCcce---eeeeeEecCCCeeEEEEEecccc-ccCCCCCCceEEE
Confidence 35789998889999766444456789999984 442 211 12333444567556666666664 5 789998
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.-..
T Consensus 305 ~W~r 308 (466)
T PHA03270 305 TWHR 308 (466)
T ss_pred EEcc
Confidence 7654
No 363
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=75.27 E-value=3.7 Score=28.50 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=19.8
Q ss_pred eCCcEEEEeecCCCCCC---------cceeeEEeeC
Q psy12724 24 KGNAAVFKCNLPSFVSD---------HLDVVSWADT 50 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~---------~~~~i~W~k~ 50 (167)
.|+++.|.|.......+ ..+.|.|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 48999999998754321 1358999986
No 364
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=74.97 E-value=4.6 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=22.9
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
.+.+|..+.++|.+++..+..--.|.|+|++.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~ 42 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGET 42 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcc
Confidence 35889999999999865421123689998653
No 365
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=71.59 E-value=3.1 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=20.5
Q ss_pred EeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
+.|+++.|.|..+.. .....+.|.|..
T Consensus 2 ~~G~sVtL~c~~~~~--~~~~~v~W~~~~ 28 (97)
T cd05775 2 ILGGSVTLPLNIPDG--TEIESITWSFNT 28 (97)
T ss_pred ccCCeEEEeCCCCCC--cEEEEEEEecCC
Confidence 579999999988651 224579999974
No 366
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=69.73 E-value=9.4 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.006 Sum_probs=26.3
Q ss_pred eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
++.....+..|+++.|.|.+++..-..-=.++|+|.
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 455667899999999999997754321015899986
No 367
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=68.34 E-value=10 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=23.2
Q ss_pred EEEEEeCCcEEE-EeecCCCCCCcceeeEEeeC
Q psy12724 19 DVFVIKGNAAVF-KCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 19 ~~~v~~G~~~~l-~C~a~~~~~~~~~~i~W~k~ 50 (167)
...+.+|+...+ .|.+.+.-+ .+.|+|.++
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkP--aa~IsW~~~ 40 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRP--AADVTWETN 40 (97)
T ss_pred eeEeecCcceeEEEEEccCCcc--CCEeEEeCC
Confidence 355678899999 999977643 368999987
No 368
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=66.53 E-value=9.9 Score=25.11 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=18.6
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+++.|.|....... +..|.|.|.++
T Consensus 1 G~~vtL~C~~~~~~~--~~~v~W~k~~~ 26 (97)
T cd05846 1 GGNVTLSCNLTLPEE--VLQVTWQKIQG 26 (97)
T ss_pred CCcEEEEEEeCCCCe--eEEEEEEEcCC
Confidence 789999998654432 23699998643
No 369
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=64.84 E-value=16 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 25 GNAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 25 G~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
-...++.|.+.+.-++ ..|+|+++
T Consensus 15 ~~~~va~C~s~~gkPa--a~IsW~~~ 38 (95)
T cd07703 15 IPVPVAKCVSANGRPP--ARISWSST 38 (95)
T ss_pred CccEEEEEEcCCCCCC--cEEEEEcC
Confidence 3567899999865433 58999988
No 370
>KOG3611|consensus
Probab=62.81 E-value=18 Score=33.52 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=39.2
Q ss_pred cEEEEeeeCCccCCcceeEEEEeCCC--eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724 82 SAVLKCHIPSFVADYVAVESWISDQG--EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 82 ~a~l~C~~~~~~~~p~p~i~W~k~~~--~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
...|.|...+ ....+.|+.-.. ..-.+. ..+.+......|.|.+..++..|. |.|.|.+....
T Consensus 571 ~~~l~c~~~~----~~a~~~w~~~~~~~~~~~~~---~~~~~~~~~~~G~lll~~~q~~~~-G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVPSS----NQAPVVWYHQSTKDGRKEEV---RQRDVVSRTDEGGLVLLSVQKLDG-GTYPCYADESS 635 (737)
T ss_pred cceeeccccc----cccceeeEeeccCcccccee---ccCcceeecccCceeEEEEeeccC-cccccccccCc
Confidence 4688898753 233368863211 111111 023333344568899999999998 99999998765
No 371
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=61.03 E-value=12 Score=25.65 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=20.0
Q ss_pred eCCcEEEEeecCCCCCC-------cceeeEEeeCC
Q psy12724 24 KGNAAVFKCNLPSFVSD-------HLDVVSWADTD 51 (167)
Q Consensus 24 ~G~~~~l~C~a~~~~~~-------~~~~i~W~k~~ 51 (167)
.|+++.|.|..+..+.+ ....|.|.|..
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~ 35 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLS 35 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEec
Confidence 38999999998765421 12469999863
No 372
>PHA03052 Hypothetical protein; Provisional
Probab=60.90 E-value=17 Score=23.09 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=27.8
Q ss_pred EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724 17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG 52 (167)
Q Consensus 17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~ 52 (167)
|+...+.-|....+.|.|.=.++...+.+.|.-++.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~ 39 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGM 39 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence 456678889999999999665555567888987743
No 373
>PHA03189 UL14 tegument protein; Provisional
Probab=58.41 E-value=97 Score=25.74 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred eEEEeCCcEEEEeeeCCccCCcceeEE-----EEeCCCeee-EEeee----------ecCCceEEEccCC---eEEEe-e
Q psy12724 75 EHVLKGNSAVLKCHIPSFVADYVAVES-----WISDQGEEL-FVDMT----------ESTDGKYLVLPSG---ELHIR-D 134 (167)
Q Consensus 75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~-----W~k~~~~~l-~~~~~----------~~~~~r~~~~~~g---~L~I~-~ 134 (167)
..+..|+.++++|.++.+ .-|..+|+ |. +....+ .+..+ .-.+.++.+...| .|.++ +
T Consensus 62 ~l~pyGdrvtVpC~fp~H-~WPevsIrarfCys~-e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~ 139 (348)
T PHA03189 62 LLVPYGDRVTVPCTFPTH-DWPEVSIRARFCYSP-ERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFR 139 (348)
T ss_pred cccCCCceeeeeeeecCC-CCceeeEEEEEeecc-ccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEE
Confidence 456679999999998755 34555442 31 111111 11100 0011222222222 23333 5
Q ss_pred cCcCCCCcceEEEeeecC
Q psy12724 135 VGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 135 v~~~D~~G~Y~C~a~n~~ 152 (167)
+..+-+ |+|.|+-.|..
T Consensus 140 v~t~ta-G~Y~CvLrN~t 156 (348)
T PHA03189 140 VSTSTA-GMYECVLRNET 156 (348)
T ss_pred EEeccc-ceEEEEecccc
Confidence 666777 99999999975
No 374
>PHA03282 envelope glycoprotein E; Provisional
Probab=55.62 E-value=10 Score=33.06 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred eEEEeecCcCCCCcceEEEeee
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
.|.+.|+..+++ |.|.|+..-
T Consensus 334 dL~F~nAp~saS-GLYVfVl~y 354 (540)
T PHA03282 334 NLQLRDASEASG-GLYVCVVYV 354 (540)
T ss_pred ceEecCCCcccC-ceEEEEEEE
Confidence 699999999999 999999863
No 375
>PHA03282 envelope glycoprotein E; Provisional
Probab=54.88 E-value=17 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=22.5
Q ss_pred ceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 120 ~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
.|..+ .|++|.|.+++.+|+ |.|.-.+.
T Consensus 117 ~rvs~-~n~tl~l~~a~~~Ds-G~Y~L~~~ 144 (540)
T PHA03282 117 PRVAV-VNGTLVLREARETDS-GMYVLSVS 144 (540)
T ss_pred cceeE-ecceEEEeeccccCC-ceEEEEec
Confidence 34433 489999999999999 99998763
No 376
>PHA03240 envelope glycoprotein M; Provisional
Probab=52.54 E-value=20 Score=28.14 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=57.9
Q ss_pred EEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEEeeeEEEecCeEEEeCCcEEEE
Q psy12724 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLK 86 (167)
Q Consensus 7 av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~g~y~c~~~~~~v~~G~~a~l~ 86 (167)
|++-.+|.-.=..+.+.+|+.+.|-=.--..++. .+.|.+.. |.- ..-.|..+..-
T Consensus 20 a~~~y~~seACievt~r~G~nVTLga~~~lhpgq---~v~Wy~~~------------------c~~---~~G~G~~~~pl 75 (258)
T PHA03240 20 AMFFYEFSEACEEHTTREGDPLLLGGGHGLGAGQ---KAHWYKHK------------------CDG---ITGNGDKLHPI 75 (258)
T ss_pred HHHHHhhhhhceecccccCCceeeCCcccCCCCC---EEEEEeee------------------ccc---ccCCCCCCcee
Confidence 4444455555566788889999887544333443 68888741 111 11246777788
Q ss_pred eeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcCCCCcceE
Q psy12724 87 CHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPEDGYKSYQ 145 (167)
Q Consensus 87 C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~ 145 (167)
|.-.+ |.+. |. ..+... ....+.... .|.+|.|-++..+|+ |+|.
T Consensus 76 C~Ytp----pk~~----r~--ktl~~t---~~nt~i~y~C~NstL~i~~vn~sd~-~nYc 121 (258)
T PHA03240 76 CTYDP----PKNG----KG--KTLDES---AENSFILYECHNSTLIIAHLNLSDA-GEYC 121 (258)
T ss_pred EEecC----Cccc----cc--cccccc---cCCCceEEEeccceEEEEEEeecCc-chhh
Confidence 88742 4433 11 111110 012222212 477899999999999 9993
No 377
>KOG1026|consensus
Probab=52.04 E-value=36 Score=31.66 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=68.8
Q ss_pred EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceEEEeeeEEEecCeE----EEeCCcEEE---
Q psy12724 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFVVSQSYTVNIMDEH----VLKGNSAVL--- 85 (167)
Q Consensus 19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v~~g~y~c~~~~~~----v~~G~~a~l--- 85 (167)
...+..|..+.++|.+.+.+. |.+.|...+.+....+.. ...+...+.|..++.. +.....+.|
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~v---p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~ 277 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPV---PCHYWFPNCLASSNTNQTSSLCRSECEVLENDLCIAENAVARSNPSILLVVDLPKA 277 (774)
T ss_pred hhhhcccchheeeeecccCCC---cceeeecccccccCCCcccccccccceeeechhhHHHHhhhhcCceeeeEEecccc
Confidence 456778999999999988774 478888775432221111 1122223666543311 111112222
Q ss_pred ------------EeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724 86 ------------KCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 86 ------------~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
.|..-+..++|.|...|..++. .+.-. ..-....... +.+.-..-+.++. |.|+|.+.|..
T Consensus 278 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~-~~~~~----g~~~~t~s~~~~C~~~~~~~h~~~-~~~~~~~e~~~ 351 (774)
T KOG1026|consen 278 EVLLCSPLSDHHNCIPIGITANPGPALHWCYNGS-GLNYR----GTVCVTKSGKEQCLPWNDPPHSHN-GNYTLFPELPG 351 (774)
T ss_pred cccCCCCccccCceeeeeccCCCCCceeeeecCc-cceEe----cccccccccCcCCcccCcCccccc-CcceeeecccC
Confidence 3554333357888999999873 33210 1111111111 4455444477886 99999999985
No 378
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=52.00 E-value=23 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.3
Q ss_pred CcEEEEeecCCCCCCcceeeEEeeC
Q psy12724 26 NAAVFKCNLPSFVSDHLDVVSWADT 50 (167)
Q Consensus 26 ~~~~l~C~a~~~~~~~~~~i~W~k~ 50 (167)
...++.|.+.+.-+ .+.|+|+++
T Consensus 16 ~~~va~C~s~~gkP--~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKP--PATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcC--CCEEEEEeC
Confidence 56779999975433 258999997
No 379
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=50.43 E-value=27 Score=30.08 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=18.9
Q ss_pred eEEEeecCcCCCCcceEEEeeecC
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTKHRL 152 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~n~~ 152 (167)
...+.|++.+|+ |.|+|+..-.-
T Consensus 82 sf~~~Nvs~sdE-GrYrCIFYLn~ 104 (500)
T PHA02914 82 SFIEENIGEHED-GDFKCIFYLGD 104 (500)
T ss_pred EEEecCcccccC-CcEEEEEEeCC
Confidence 467888999999 99999886543
No 380
>PHA03286 envelope glycoprotein E; Provisional
Probab=49.80 E-value=20 Score=31.18 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.1
Q ss_pred eEEEeecCcCCCCcceEEEeee
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
.|.+.|++.+|+ |.|.|++.-
T Consensus 308 nL~f~nA~~s~S-GLYVfVl~y 328 (492)
T PHA03286 308 SFRLANAQPTDA-GLYVVVALY 328 (492)
T ss_pred ceeecCCCcccC-ceEEEEEEE
Confidence 599999999999 999999863
No 381
>PHA03271 envelope glycoprotein C; Provisional
Probab=48.17 E-value=1.1e+02 Score=26.68 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=41.9
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE--EEccCCeEEEeecCcCCCCc-----ceEEEee
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY--LVLPSGELHIRDVGPEDGYK-----SYQCRTK 149 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~--~~~~~g~L~I~~v~~~D~~G-----~Y~C~a~ 149 (167)
++.|+.=.=.|.+..+...-...++|++||. +..+.. ..+... ....+|.=.++-+..+++ | +.+|.+.
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~-~V~~~~--~rdt~~~w~d~~~g~S~VSTltl~a~-~~~~PPsLRCeV~ 332 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGN-IATPRK--DRDGSFWWFESGRGATLVSTITLGNS-GIDPPPKISCLVA 332 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCc-cccCcc--ccceeEEEecCCCceeEEEEEEcccc-cCCCCCCceEEEE
Confidence 4688888889999766443355789999984 443221 122222 112334333444444444 4 8899987
Q ss_pred ecC
Q psy12724 150 HRL 152 (167)
Q Consensus 150 n~~ 152 (167)
-..
T Consensus 333 W~r 335 (490)
T PHA03271 333 WKQ 335 (490)
T ss_pred Ecc
Confidence 654
No 382
>PHA03042 CD47-like protein; Provisional
Probab=47.40 E-value=47 Score=27.03 Aligned_cols=73 Identities=16% Similarity=0.301 Sum_probs=42.5
Q ss_pred EeCCcEEEEeecCCCCCCc--ceeeEEeeCCCceeeecCCc----e-----EEEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724 23 IKGNAAVFKCNLPSFVSDH--LDVVSWADTDGGQYQIDNQD----F-----VVSQSYTVNIMDEHVLKGNSAVLKCHIPS 91 (167)
Q Consensus 23 ~~G~~~~l~C~a~~~~~~~--~~~i~W~k~~~~~~~~~~~~----~-----v~~g~y~c~~~~~~v~~G~~a~l~C~~~~ 91 (167)
.=.+++.+.|...+--... --.+.|..++...+..|+.. . .+.|.|+|.+.+..- +|.+.. +
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~~l~GNYTCEv~~l~n-~gk~~I-e----- 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSKNLSGNYTCEAINKFN-KIKNTI-E----- 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEeccccCCCceeEEEeeccc-CccEEE-E-----
Confidence 4478999999997732110 02489998855434444442 1 248999999865432 444332 1
Q ss_pred ccCCcceeEEEEeCC
Q psy12724 92 FVADYVAVESWISDQ 106 (167)
Q Consensus 92 ~~~~p~p~i~W~k~~ 106 (167)
-+-.++|+...
T Consensus 102 ----Lk~~~~WFs~~ 112 (286)
T PHA03042 102 ----LQYVIKWFTSE 112 (286)
T ss_pred ----EEEEEEccChh
Confidence 12236898654
No 383
>PHA03283 envelope glycoprotein E; Provisional
Probab=46.43 E-value=21 Score=31.56 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.3
Q ss_pred eEEEeecCcCCCCcceEEEeee
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTKH 150 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~n 150 (167)
.|.+.|+..+++ |.|.|+..-
T Consensus 316 ~L~f~nap~~~S-GLYVfVv~y 336 (542)
T PHA03283 316 DLLFKNAPASAS-GLYVFVLLY 336 (542)
T ss_pred ceEeccCCcccC-ceEEEEEEE
Confidence 699999999999 999999873
No 384
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=46.43 E-value=11 Score=32.54 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=17.0
Q ss_pred eEEEeecCcCCCCcceEEEeeec
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTKHR 151 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~n~ 151 (167)
.|.+.|+..+++ |.|.|++.--
T Consensus 270 ~l~f~~a~~~~s-GLYv~V~~~n 291 (439)
T PF02480_consen 270 DLQFTNAPESAS-GLYVFVVYYN 291 (439)
T ss_dssp SEEESS--GGG--EEEEEEEEET
T ss_pred ceEecCCCcccC-ceEEEEEEEC
Confidence 699999999999 9999998743
No 385
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=46.10 E-value=29 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=18.5
Q ss_pred cEEEEeecCCCCCCcceeeEEeeCC
Q psy12724 27 AAVFKCNLPSFVSDHLDVVSWADTD 51 (167)
Q Consensus 27 ~~~l~C~a~~~~~~~~~~i~W~k~~ 51 (167)
++.|.|.......+....|.|.|..
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~ 26 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIREN 26 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEcc
Confidence 6899999876553435579999863
No 386
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=45.66 E-value=82 Score=20.41 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=17.8
Q ss_pred CeEEEeecCcCCCCcceEEEe-eec
Q psy12724 128 GELHIRDVGPEDGYKSYQCRT-KHR 151 (167)
Q Consensus 128 g~L~I~~v~~~D~~G~Y~C~a-~n~ 151 (167)
..+...+...+|+ |...|.| .+.
T Consensus 43 ~~~~~~~~~~~d~-G~w~C~a~~~~ 66 (80)
T PF05790_consen 43 KLVSTFTPTTEDS-GTWVCTASDNE 66 (80)
T ss_dssp SEEEEESBTCGGS-EEEEEEEEECT
T ss_pred eEEEEecCCCCCC-EEEEEEEcCCc
Confidence 3456667788998 9999999 444
No 387
>PHA02982 hypothetical protein; Provisional
Probab=45.35 E-value=19 Score=28.24 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=28.7
Q ss_pred EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724 16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ 56 (167)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~ 56 (167)
+--|+.+..|+++.|+|..++. .+ +....|.++++.-+.
T Consensus 30 d~~dv~a~vd~~V~L~C~~~~~-~~-i~~~~W~~~~~~~la 68 (251)
T PHA02982 30 DTADVNATVDQEVKLQCLFKDA-DE-ISRAMWKGDAGFMLA 68 (251)
T ss_pred chhhhhccCCCcEEEEecCCCc-ch-hhhheeeCCCCeEEE
Confidence 3446778889999999996543 22 567899999876554
No 388
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.64 E-value=77 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=13.2
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEe
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWIS 104 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k 104 (167)
|..|++.+|.=. |...++|+|
T Consensus 2 v~~G~N~TL~Gp-------~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLVGP-------PDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEeCC-------CCCceEEEE
Confidence 567888887632 323468983
No 389
>PHA03112 IL-18 binding protein; Provisional
Probab=42.13 E-value=99 Score=22.58 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEe-eeecCCceE------EEccC---CeEEEeecCcCCCCcceEE
Q psy12724 78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVD-MTESTDGKY------LVLPS---GELHIRDVGPEDGYKSYQC 146 (167)
Q Consensus 78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~-~~~~~~~r~------~~~~~---g~L~I~~v~~~D~~G~Y~C 146 (167)
.+|++++|+|.+-++. | -.-+.|.+++...+... ..+..+++. ...++ -.|.+.+++.+-.+-+.+|
T Consensus 36 k~~~~vvL~C~gcs~f--p~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 36 KETEKVVLECRGCSYF--PKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred CCCCEEEEEEECccCC--CCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 4699999999986442 4 35679997652221100 000011111 11112 2588888886633468899
Q ss_pred Eeeec
Q psy12724 147 RTKHR 151 (167)
Q Consensus 147 ~a~n~ 151 (167)
+-...
T Consensus 114 VL~D~ 118 (141)
T PHA03112 114 VLMDL 118 (141)
T ss_pred EEecC
Confidence 87654
No 390
>KOG1480|consensus
Probab=40.82 E-value=4.9 Score=37.06 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=45.4
Q ss_pred EEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--c------------eEEEeeeEEEe
Q psy12724 7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--D------------FVVSQSYTVNI 72 (167)
Q Consensus 7 av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~------------~v~~g~y~c~~ 72 (167)
|+++..|...+....|..+....+.|..+-.-. .-.+.|+|++. .+.++.+ + .+..|.|+|.+
T Consensus 126 ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~p--aae~~w~k~e~-~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a 202 (909)
T KOG1480|consen 126 AYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDP--KAEVEWLKNEV-VIDPDANVIRASDHNLIISQARLSDSGNYTCEA 202 (909)
T ss_pred HHHHHhhccChhhheecccccccccccCcccch--hhhhhccccCC-CCCccccchhhhcCCccccchhhhhcccceeee
Confidence 455667899999999999999999999754332 23689999843 3333211 1 12379999998
Q ss_pred cC
Q psy12724 73 MD 74 (167)
Q Consensus 73 ~~ 74 (167)
.+
T Consensus 203 ~n 204 (909)
T KOG1480|consen 203 TN 204 (909)
T ss_pred eh
Confidence 54
No 391
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=40.13 E-value=27 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.4
Q ss_pred eeeEEeeCCCceeeecCCc------e-E-------EEeeeEEEecCeE
Q psy12724 43 DVVSWADTDGGQYQIDNQD------F-V-------VSQSYTVNIMDEH 76 (167)
Q Consensus 43 ~~i~W~k~~~~~~~~~~~~------~-v-------~~g~y~c~~~~~~ 76 (167)
|...|..+++..+..|... . + ++|.|+|..+-..
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 5789999998877654221 1 1 4899999876443
No 392
>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.
Probab=35.45 E-value=1.2e+02 Score=19.51 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=29.8
Q ss_pred eEEEc--cCCeEEEeecCcCCCCcceEEEeeecC---cceEEEeeeCCe
Q psy12724 121 KYLVL--PSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSATKGR 164 (167)
Q Consensus 121 r~~~~--~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~~~~ 164 (167)
.|.++ ..|.|.+..+..++| +.=.|...|.. .+..+|.-++++
T Consensus 5 ~yRvl~d~kgr~~l~~I~~eea-~~KLckV~~k~~~~gG~~ql~~hDGr 52 (77)
T PF00900_consen 5 HYRVLYDTKGRFVLHPISEEEA-KYKLCKVRNKTTGKGGKPQLNTHDGR 52 (77)
T ss_dssp EEEEEE-TTS-EEEEEE-TTGG-GEEEEEEEEEEEEGGGEEEEEETTTE
T ss_pred EEEEEECCCCcEEEEECCHHHc-cCeEEEEeEEEEecCCcEEEEecCce
Confidence 45444 468899999999998 88899999876 455666655553
No 393
>PHA03269 envelope glycoprotein C; Provisional
Probab=33.58 E-value=1.8e+02 Score=25.88 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=40.7
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCc-CC-CCcc-----eEEEe
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGP-ED-GYKS-----YQCRT 148 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~-~D-~~G~-----Y~C~a 148 (167)
+++|+.=.=.|.+..+...-...++|++|+ .++.... ....+....+| .-.++-+.. ++ + +. .+|.+
T Consensus 339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng-~~V~~~~---it~t~~~~~dGlFSrVSTLtlp~~~~-~d~~PPsLrCeV 413 (566)
T PHA03269 339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNF-GNIGKNF---ITDAIKENADGLFSSVSALHIPAQKN-ADYPPPAIQCNV 413 (566)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCC-cccCccc---cccceeecCCCceEEEEEEeccCccc-cCCCCCCceEEE
Confidence 478998888999976644345678999997 4553211 12223333455 222333333 22 2 44 59998
Q ss_pred eecC
Q psy12724 149 KHRL 152 (167)
Q Consensus 149 ~n~~ 152 (167)
.-..
T Consensus 414 ~W~R 417 (566)
T PHA03269 414 LWIR 417 (566)
T ss_pred EEcc
Confidence 7654
No 394
>PHA03273 envelope glycoprotein C; Provisional
Probab=31.77 E-value=2.1e+02 Score=25.20 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=41.3
Q ss_pred EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE-EeeeecCCceEEEccCCe-EEEeecCcCCC-----CcceEEEee
Q psy12724 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF-VDMTESTDGKYLVLPSGE-LHIRDVGPEDG-----YKSYQCRTK 149 (167)
Q Consensus 77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~-~~~~~~~~~r~~~~~~g~-L~I~~v~~~D~-----~G~Y~C~a~ 149 (167)
+++|+.=.-.|.+..+...-...++|++|+ .++. +.. ....+....+|. ..++-+..++. ==+.+|.+.
T Consensus 247 vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg-~~V~~~~~---~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 247 SLKGENYRAVCVVASYFPHSSVKLRWYKNA-KEVDFTKY---VTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCC-eecccccc---ceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 468888888899976644345678999998 4554 211 122233333342 33444433332 037899887
Q ss_pred ecC
Q psy12724 150 HRL 152 (167)
Q Consensus 150 n~~ 152 (167)
-..
T Consensus 323 W~r 325 (486)
T PHA03273 323 WYR 325 (486)
T ss_pred Ecc
Confidence 654
No 395
>PHA03273 envelope glycoprotein C; Provisional
Probab=30.00 E-value=3.9e+02 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.5
Q ss_pred EeeeEEEecCeEEEeCCcEEEEeeeC
Q psy12724 65 SQSYTVNIMDEHVLKGNSAVLKCHIP 90 (167)
Q Consensus 65 ~g~y~c~~~~~~v~~G~~a~l~C~~~ 90 (167)
.+.+.|.-++..+.-|+.+.+.|.++
T Consensus 88 ~~~~~C~~~~vsa~Y~~~v~i~C~v~ 113 (486)
T PHA03273 88 ETTITCTKSLISVPYYKSVDMNCTTS 113 (486)
T ss_pred CcceEecCcccccccccceEEeeccc
Confidence 46788988888889999999999974
No 396
>PHA03269 envelope glycoprotein C; Provisional
Probab=25.78 E-value=1.9e+02 Score=25.73 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=25.8
Q ss_pred EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724 20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG 53 (167)
Q Consensus 20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~ 53 (167)
-.|.+|+.-.=.|.+.++=.+.-..++|++|++.
T Consensus 337 ~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~ 370 (566)
T PHA03269 337 DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGN 370 (566)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCcc
Confidence 3478899999999998864333457999999664
No 397
>PHA03270 envelope glycoprotein C; Provisional
Probab=25.65 E-value=1.8e+02 Score=25.36 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=27.2
Q ss_pred EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724 21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI 57 (167)
Q Consensus 21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~ 57 (167)
.+.+|+.-.=.|.+.++=.+.-..++|++|+.....+
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~ 266 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAP 266 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 3788999999999988644334579999997754333
No 398
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=2e+02 Score=22.94 Aligned_cols=46 Identities=30% Similarity=0.594 Sum_probs=36.0
Q ss_pred CCceEEEcc--CCeEEEeecCcCCCCcceEEEeeecC---cceEEEeeeCCe
Q psy12724 118 TDGKYLVLP--SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSATKGR 164 (167)
Q Consensus 118 ~~~r~~~~~--~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~~~~ 164 (167)
.+..|.+++ .|.|.++.+..+-+ +.=.|...|+. .+.++|--+++|
T Consensus 94 tgE~yRvl~d~~grl~l~~is~EeA-~~Kl~kV~nKt~vkgG~~QLn~hDGr 144 (241)
T COG1471 94 TGEHYRVLPDEKGRLVLHPISAEEA-SYKLCKVKNKTTVKGGRIQLNLHDGR 144 (241)
T ss_pred CCceEEEEecCCccEEEEecChhhc-cceEEEEEeEEEecCCEEEEEecCCc
Confidence 456677775 47899999998888 88899999986 567777776665
No 399
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=25.36 E-value=42 Score=25.04 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.7
Q ss_pred eEEEeecCcCCCCcceEEEee
Q psy12724 129 ELHIRDVGPEDGYKSYQCRTK 149 (167)
Q Consensus 129 ~L~I~~v~~~D~~G~Y~C~a~ 149 (167)
.|.|++-+.+|+ |.|.=...
T Consensus 125 lL~i~~p~~~ds-G~Y~lRV~ 144 (161)
T PF01688_consen 125 LLRIRNPRPEDS-GIYYLRVW 144 (161)
T ss_pred EEEeCCCCcccc-eEEEEEEE
Confidence 499999999999 99987665
No 400
>KOG0613|consensus
Probab=21.78 E-value=59 Score=31.82 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=19.1
Q ss_pred CCcEEEEeeeCCccCCcceeEEEEeCCCeee
Q psy12724 80 GNSAVLKCHIPSFVADYVAVESWISDQGEEL 110 (167)
Q Consensus 80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l 110 (167)
-..+.+.|.+ |.|.|.++|+.++ ..+
T Consensus 205 e~~v~~v~s~----gqp~~~~~~~~~g-~~i 230 (1205)
T KOG0613|consen 205 ESRVRAVVSA----GQPEPLERWEILG-ELI 230 (1205)
T ss_pred ceeEEEEEec----CCCccchhhhhcc-ccc
Confidence 3446667776 6799999999997 454
Done!