RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12724
(167 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 97.7 bits (243), Expect = 6e-25
Identities = 76/106 (71%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 62 FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
VV+Q Y ++ EHV++GNSAV+KC IPSFVAD+V V SW +D+ E F DGK
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY--DGK 157
Query: 122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
YLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203
Score = 37.2 bits (86), Expect = 0.001
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 23/80 (28%)
Query: 77 VLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH 131
A ++C P WI G + G + G+L
Sbjct: 16 FSNSTGAEIECKASGNPMPEI--------IWIRSDGTAV-----GDVPGLRQISSDGKLV 62
Query: 132 IRDVGPEDGYK-----SYQC 146
ED + Y C
Sbjct: 63 FPPFRAEDYRQEVHAQVYAC 82
Score = 36.1 bits (83), Expect = 0.003
Identities = 24/114 (21%), Positives = 32/114 (28%), Gaps = 42/114 (36%)
Query: 51 DGGQY--QIDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFV 93
D G+Y ++N S + + + V G AV C +
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV- 339
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
SW DGK + L I V ED G YQC
Sbjct: 340 -------SW--------------MKDGKAIGHSESVLRIESVKKEDKGM--YQC 370
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 92.3 bits (229), Expect = 1e-22
Identities = 77/106 (72%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
Query: 62 FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
VV+Q Y ++ EHV++GNSAV+KC IPSFVAD+V V SW +D EE + E DGK
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-EEENYFPGAEY-DGK 192
Query: 122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
YLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 193 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238
Score = 37.2 bits (86), Expect = 0.002
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 50 TDGGQYQI--DNQDFVVSQSYTVNIM---------DEHVLKGNSAVLKCHIPSFVADYVA 98
DGG Y+ ++ V S +N+ + ++ G + ++ C + + D +
Sbjct: 500 NDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSI- 558
Query: 99 VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRL 158
W D L + K V P+G L I +V +Y C K++ R
Sbjct: 559 --VWERD-NRAL------PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG 609
Query: 159 SAT 161
S
Sbjct: 610 SLE 612
Score = 35.7 bits (82), Expect = 0.006
Identities = 24/170 (14%), Positives = 39/170 (22%), Gaps = 50/170 (29%)
Query: 19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSW---------------------------ADTD 51
++ G + C +D + W ++D
Sbjct: 535 KKAIVAGETLIVTC---PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSD 591
Query: 52 GGQY--QIDNQ-DFVVSQSYTVNIM-----------DEHVLKGNSAVLKCHIPSFVADYV 97
Y NQ + S V +M + G L C +P D
Sbjct: 592 QATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPG--GDLP 649
Query: 98 AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR 147
W D G+ + D + L I V + C
Sbjct: 650 LNIDWTLD-GQAISED--LGITTSRVGRRGSVLTIEAVEASHAGN-FTCH 695
Score = 35.3 bits (81), Expect = 0.007
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ D+ +G+ A ++C +W + + + + + G
Sbjct: 718 ILEPTDKAFAQGSDAKVECKA---DGFPKPQVTWKKA-VGDTPGEYKDLKKSDNIRVEEG 773
Query: 129 ELHIRDVGPEDGYKSYQCR 147
LH+ ++ + Y C
Sbjct: 774 TLHVDNIQKTNEGY-YLCE 791
Score = 34.9 bits (80), Expect = 0.008
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 23/82 (28%)
Query: 76 HVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL 130
A ++C P WI G + G + G+L
Sbjct: 50 DFSNSTGAEIECKASGNPMPEI--------IWIRSDGTAV-----GDVPGLRQISSDGKL 96
Query: 131 HIRDVGPEDGYK-----SYQCR 147
ED + Y C
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACL 118
Score = 30.3 bits (68), Expect = 0.32
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 119 DGKYLVLPSGELHIRDVGPEDGYKSYQCR 147
DGK + L I V ED YQC
Sbjct: 380 DGKAIGHSESVLRIESVKKEDKGM-YQCF 407
Score = 29.5 bits (66), Expect = 0.51
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 44/125 (35%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIMDEH-------------VLKGNSAVLKCH-----IP 90
D G YQ + N S + + + G S LKC P
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP 459
Query: 91 SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--------SGELHIRDVGPEDGYK 142
SW D G+++ + + +Y V L+I V DG
Sbjct: 460 EI--------SWELD-GKKI------ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 143 SYQCR 147
Y+C
Sbjct: 505 -YKCI 508
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 63.3 bits (154), Expect = 2e-12
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
V +G VL C P + +WI + + D + +++ +G L+I
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSY--AWIFN-EYPSYQD-----NRRFVSQETGNLYIA 162
Query: 134 DVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
V D +Y C + +T L ++
Sbjct: 163 KVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILR 195
Score = 37.9 bits (88), Expect = 7e-04
Identities = 28/198 (14%), Positives = 45/198 (22%), Gaps = 75/198 (37%)
Query: 6 VAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWAD---------------- 49
A + + V V +G V C P + +W
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL--SYAWIFNEYPSYQDNRRFVSQE 155
Query: 50 -----------TDGGQYQ-----IDNQDFVVSQSYTVNI------------------MDE 75
+D G Y V+ + +
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 76 HVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL 130
KG + L+C P+ W G+ + +G L
Sbjct: 216 PAEKGTTVKLECFALGNPVPTI--------LWRRADGKPI-------ARKARRHKSNGIL 260
Query: 131 HIRDVGPED-GYKSYQCR 147
I + ED G SY+C
Sbjct: 261 EIPNFQQEDAG--SYECV 276
Score = 34.0 bits (78), Expect = 0.017
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 36/115 (31%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFV 93
D G Y+ +N + D HV S +C P++
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTY- 327
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
W+ + G+ L + + G L+I V D G YQC
Sbjct: 328 -------RWLKN-GDPL-------LTRDRIQIEQGTLNITIVNLSDAGM--YQCV 365
Score = 28.3 bits (63), Expect = 1.2
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 19/81 (23%)
Query: 71 NIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL 125
++M + L C + P W + G ++ + +
Sbjct: 14 HVMFPLDSEEKKVKLSCEVKGNPKPHI--------RWKLN-GTDV-----DIGMDFRYSV 59
Query: 126 PSGELHIRDVGPEDGYKSYQC 146
G L I + +YQC
Sbjct: 60 VDGSLLINNPNKTQDAGTYQC 80
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 55.3 bits (133), Expect = 8e-10
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 49 DTDGGQYQ---------IDNQDFVVSQSYTVNIMDE-----HVLKGNSAVLKCHIPSFVA 94
D G YQ + +++ + + E + +G + C P
Sbjct: 71 AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP 130
Query: 95 DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG 154
W+ ++ + +++ +G L+I D +Y C +
Sbjct: 131 ALSY--RWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHIDF 183
Query: 155 ETR 157
T+
Sbjct: 184 ITK 186
Score = 35.6 bits (82), Expect = 0.004
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 56/166 (33%)
Query: 19 DVFVIKGNAAVFKC-----------------NLPSFVSD---HLDVVSWADTDGGQYQ-- 56
D + + G +C + S L + + D G Y+
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECE 275
Query: 57 IDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFVADYVAVES 101
+N + + I D G+ C P+
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV--------R 327
Query: 102 WISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
W+ D G+ L + + GEL + ED G YQC
Sbjct: 328 WLRD-GQPL-------ASQNRIEVSGGELRFSKLVLEDSGM--YQC 363
Score = 30.6 bits (69), Expect = 0.24
Identities = 28/201 (13%), Positives = 48/201 (23%), Gaps = 81/201 (40%)
Query: 6 VAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW------------------ 47
+ ++ + V + +G +F C+ P W
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL--SYRWLLNEFPNFIPADGRRFVS 154
Query: 48 -----------ADTDGGQYQ-------IDNQDFVVSQSYTVNIM---------------- 73
+D G Y V S+ +++
Sbjct: 155 QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFP 214
Query: 74 -DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
D + L G L+C P W G +
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQI--------KWRKLDGS----------QTSKWLSSE 256
Query: 128 GELHIRDVGPED-GYKSYQCR 147
LHI++V ED G +Y+C
Sbjct: 257 PLLHIQNVDFEDEG--TYECE 275
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 52.6 bits (126), Expect = 7e-09
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 24/142 (16%)
Query: 41 HLDVVSWADTDGGQYQ---------IDNQDFVVSQSYTVNIMDEH-----VLKGNSAVLK 86
+ G+YQ + + S + E+ V +G L+
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 87 CHIP-SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ 145
C+ P + + W+S E + + D + +G+L+ +V +D Y
Sbjct: 138 CNPPPGLPSPVI---FWMSSSMEPI------TQDKRVSQGHNGDLYFSNVMLQDMQTDYS 188
Query: 146 CRTKHRLTGETRLSATKGRLVI 167
C + T + V+
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVL 210
Score = 37.9 bits (88), Expect = 8e-04
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 33/114 (28%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFV 93
D G+Y N+ + + +V + + + G L C P+
Sbjct: 286 DSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV- 344
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
W+ + GE L + + + RD YQC
Sbjct: 345 -------QWMVN-GEPL----QSAPPNPNREVAGDTIIFRDTQISSRAV--YQC 384
Score = 29.5 bits (66), Expect = 0.56
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 23/80 (28%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ VL+G +L+C P +W G +L +D +
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDI--------AWYKK-GGDL------PSDKAKFENFNK 275
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L I +V ED G Y C
Sbjct: 276 ALRITNVSEEDSG--EYFCL 293
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 51.5 bits (123), Expect = 2e-08
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSF------------VADYVAVESWISDQGEELFVDMTE 116
T+ +V +G +L H V + ++ +
Sbjct: 3 TIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP--- 59
Query: 117 STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
+ G+ ++ P+ L I+++ D Y +
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103
Score = 34.9 bits (80), Expect = 0.009
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 35/128 (27%)
Query: 50 TDGGQYQ--IDNQD-FVVSQSYTVNIM-----------DEHVLKGNSAVLKCHIPSF-VA 94
D Y+ N S S +N++ + G + L CH S A
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPA 233
Query: 95 DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG 154
Y SW +G + EL I ++ + SY C+ + TG
Sbjct: 234 QY----SWF--------------VNGT-FQQSTQELFIPNITVNNS-GSYTCQAHNSDTG 273
Query: 155 ETRLSATK 162
R + T
Sbjct: 274 LNRTTVTT 281
Score = 33.0 bits (75), Expect = 0.038
Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 29/114 (25%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM--------------DEHVLKGNSAVLKCHIPSFVA 94
+ G Y +N S++ I + V ++ C A
Sbjct: 437 NSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE---A 493
Query: 95 DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
W++ Q + + L + L + +V D Y C
Sbjct: 494 QNTTYLWWVNGQSLPV-------SPRLQLSNGNRTLTLFNVTRNDARA--YVCG 538
Score = 29.2 bits (65), Expect = 0.68
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 45/117 (38%)
Query: 50 TDGGQYQ---IDNQDFVVSQSYTVNIM-----------DEHVLKGNSAVLKCHI-----P 90
D G Y+ + S +N++ + G + L CH
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA 411
Query: 91 SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
+ SW DG + EL I ++ ++ G Y C
Sbjct: 412 QY--------SW--------------LIDGNIQQ-HTQELFISNITEKNSG--LYTC 443
Score = 27.6 bits (61), Expect = 2.3
Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 45/127 (35%)
Query: 51 DGGQY--QIDNQ-DFVVSQSYTVNIM-----------DEHVLKGNSAVLKCHI-----PS 91
D Y I N S T++++ D L G + L CH P
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ 590
Query: 92 FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKH 150
+ SW +G + L I + P + G +Y C +
Sbjct: 591 Y--------SW--------------RINGI-PQQHTQVLFIAKITPNNNG--TYACFVSN 625
Query: 151 RLTGETR 157
TG
Sbjct: 626 LATGRNN 632
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 51.1 bits (122), Expect = 3e-08
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 4/102 (3%)
Query: 62 FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
+ ++ ++G L C +P+ + +W D +
Sbjct: 97 KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPK--PLITWKKRLSGADPNADVTDFDRR 154
Query: 122 YLVLPSGELHIRDVGPEDG--YKSYQCRTKHRLTGETRLSAT 161
P G L+ V ED Y C K+ E +
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196
Score = 36.4 bits (84), Expect = 0.003
Identities = 17/79 (21%), Positives = 21/79 (26%), Gaps = 20/79 (25%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ + N VL+C I SW D G+ L G
Sbjct: 15 EVLFRENNPTVLECIIEGNDQGVKY-------SWKKD-GKSY----NWQEHNAALRKDEG 62
Query: 129 ELHIRDVGPED-GYKSYQC 146
L D G YQC
Sbjct: 63 SLVFLRPQASDEG--HYQC 79
Score = 32.6 bits (74), Expect = 0.050
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
D G+ ++ C ++ + G+++ + + ++
Sbjct: 221 DMMAKAGDVTMIYCMYGSNPMGYP--------NYFKN-GKDVNGNPEDRI-TRHNRTSGK 270
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L + PED G Y C
Sbjct: 271 RLLFKTTLPEDEG--VYTCE 288
Score = 29.5 bits (66), Expect = 0.46
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 39/116 (33%)
Query: 51 DGGQYQ--IDN-QDFVVSQSYTVNIM-----------DEHVLKGNSAVLKCHI-----PS 91
D G Y +DN S + ++ V +G + C + P+
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 92 FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
W + + L + G+ V SG L I+ V D GY Y C
Sbjct: 341 V--------VWSHN-AKPL-------SGGRATVTDSG-LVIKGVKNGDKGY--YGC 377
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 51.0 bits (122), Expect = 3e-08
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 24/126 (19%)
Query: 36 SFVSDHLDVVSWADTDGGQYQ----IDNQDFVVSQSYTVNIM----------DEHVLKGN 81
S + ++ D G YQ + + ++S++ V + G+
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD 137
Query: 82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-G 140
+ +LKC + + W + ++L D + +VLPSG L I + P D G
Sbjct: 138 TVLLKCEVIGDPMPTI---HWQKN-QQDLNP---IPGDSRVVVLPSGALQISRLQPGDSG 190
Query: 141 YKSYQC 146
Y+C
Sbjct: 191 --VYRC 194
Score = 38.7 bits (90), Expect = 5e-04
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 23/84 (27%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + + + +C + P+ +W+ + G+ + +
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTV--------NWMKN-GDVV------IPSDYFQ 360
Query: 124 VLPSGELHIRDVGPED-GYKSYQC 146
++ L I V D G+ YQC
Sbjct: 361 IVGGSNLRILGVVKSDEGF--YQC 382
Score = 37.1 bits (86), Expect = 0.001
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 22/87 (25%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGK 121
+ + ++G AVL+C + PSF +W+ E + + K
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSF--------TWLRG-EEVI-----QLRSKK 268
Query: 122 YLVLPSGELHIRDVGPED-GYKSYQCR 147
Y +L L I +V +D G +Y C
Sbjct: 269 YSLLGGSNLLISNVTDDDSG--TYTCV 293
Score = 32.1 bits (73), Expect = 0.067
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVE-SWISDQGEELFVDMTESTDGKYLVLPSGELHI 132
D ++G + +L C S D W D G L D + LP+G L I
Sbjct: 30 DAVTMRGGNVLLNCSAES---DRGVPVIKWKKD-GLIL----ALGMDDRKQQLPNGSLLI 81
Query: 133 RDVGPEDGYKS----YQCRTKHRLTGETR 157
+++ +K YQC +G
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSII 110
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 47.6 bits (113), Expect = 2e-07
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V +G VL C P D ++ W+ + +F+ M + +++ +G L+I +V
Sbjct: 20 VKEGKGMVLLCDPPYHFPDDLSY-RWLLN-EFPVFITMDKR---RFVSQTNGNLYIANVE 74
Query: 137 PEDGYKSYQCRTKHRLTGETRLSA 160
D +Y C ++ S
Sbjct: 75 ASDK-GNYSCFVSSPSITKSVFSK 97
Score = 32.2 bits (73), Expect = 0.056
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 25/94 (26%)
Query: 74 DEHVLKGNSAVLKCH-----IPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
D + L G + L+C +P W E + +
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDI--------RWRKV-LEPM-------PSTAEISTSGA 165
Query: 129 ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L I ++ ED G Y+C ++ G+ + A
Sbjct: 166 VLKIFNIQLEDEG--IYECEAENIR-GKDKHQAR 196
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 48.2 bits (115), Expect = 3e-07
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 53 GQY--QIDNQDFV-VSQSYTVNIMDEHVLKGNSAVLKCH----IPSFVADYVAVESWISD 105
G+Y ++D F + D +V +G +A LKC + S SWI+
Sbjct: 326 GRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSV--------SWITP 377
Query: 106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
G V + + VL G L+ +V +D Y C
Sbjct: 378 NGT---VMTHGAYKVRIAVLSDGTLNFTNVTVQDT-GMYTC 414
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 48.2 bits (115), Expect = 3e-07
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
D ++ +G A LKC ++ W+ G L S + VL G L+
Sbjct: 361 DLNISEGRMAELKCR-----TPPMSSVKWLLPNGTVL---SHASRHPRISVLNDGTLNFS 412
Query: 134 DVGPED-GYKSYQC 146
V D G Y C
Sbjct: 413 HVLLSDTG--VYTC 424
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
V +G++ C D W+S + + + ++G+ V P G L +R
Sbjct: 394 QVFVDEGHTVQFVC---RADGDPPPAILWLSPRKHLV----SAKSNGRLTVFPDGTLEVR 446
Query: 134 DVGPED-GYKSYQC 146
+D G +Y C
Sbjct: 447 YAQVQDNG--TYLC 458
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 42.4 bits (100), Expect = 4e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 23/99 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
++ + +A+LKC P SW+ + G D +
Sbjct: 12 LQGPANQTLAVDGTALLKCKATGDPLPVI--------SWLKE-GFTF-----PGRDPRAT 57
Query: 124 VLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ G L I+++ D G +Y C GET SA
Sbjct: 58 IQEQGTLQIKNLRISDTG--TYTCVATSSS-GETSWSAV 93
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 43.1 bits (101), Expect = 1e-05
Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 34/166 (20%)
Query: 19 DVFVIKGNAAVFKCNLPSFV--------------SDHLDVVSWADTDGGQYQIDNQD--- 61
D+ V G+ C P FV + T+ G+Y N+
Sbjct: 45 DLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS 104
Query: 62 -----FV-VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT 115
FV + + + N +++C + V S QG+ L
Sbjct: 105 NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDP---EVTNYSLKGCQGKPL----- 156
Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
D +++ P + I+ V C G++ LS
Sbjct: 157 -PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV--DQEGKSVLSEK 199
Score = 37.0 bits (85), Expect = 0.002
Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 32/133 (24%)
Query: 51 DGGQY--QIDNQDFVVSQSYTVNIM-------------DEHVLKGNSAVLKCHI-----P 90
D G + +N + + T+ ++ V G + L P
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKP 343
Query: 91 SFVADYVAVESWISDQGE-ELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRT 148
WI + ++ + + ELH+ + + G Y
Sbjct: 344 EHQ-------QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT--YTFLV 394
Query: 149 KHRLTGETRLSAT 161
+ ++
Sbjct: 395 SNSD-VNAAIAFN 406
Score = 31.2 bits (70), Expect = 0.17
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 24/130 (18%)
Query: 51 DGGQYQ---IDNQDFVVSQSYTVNIM--------------DEHVLKGNSAVLKCHIPSFV 93
V+S+ + + + + +G + C I
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDV- 238
Query: 94 ADYVAVESWISDQGE-ELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHR 151
+W + + +L G + L I D G + C +
Sbjct: 239 -SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV--FMCYANNT 295
Query: 152 LTGETRLSAT 161
G ++ T
Sbjct: 296 F-GSANVTTT 304
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.9 bits (96), Expect = 2e-05
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 23/95 (24%)
Query: 73 MDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
+++ V + VL C P+ W D G + + D + L +
Sbjct: 16 VNQTVAVDGTFVLSCVATGSPVPTI--------LWRKD-GVLV-----STQDSRIKQLEN 61
Query: 128 GELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
G L IR D G Y C GE SA
Sbjct: 62 GVLQIRYAKLGDTG--RYTCIASTPS-GEATWSAY 93
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 41.7 bits (98), Expect = 2e-05
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGK 121
++ + + +G A + C + P+ SW+ EE+ T +D +
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAV--------SWLYH-NEEV----TTISDNR 50
Query: 122 YLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ +L + L I ++ D G Y+C + GE
Sbjct: 51 FAMLANNNLQILNINKSDEGI--YRCEGRVEARGEIDFRDI 89
Score = 33.6 bits (77), Expect = 0.016
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 22/80 (27%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ +G C P+ SW + G+ + E + L +
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAI--------SWFRN-GKLI-----EENEKYILKGSNT 152
Query: 129 ELHIRDVGPED-GYKSYQCR 147
EL +R++ D G Y CR
Sbjct: 153 ELTVRNIINSDGGP--YVCR 170
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 26/125 (20%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIMDE-----------HVLKGNSAVLKCHIPSFVADYV 97
+ G Y+ S + + + D V + A+L C + V +
Sbjct: 62 NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLE-- 119
Query: 98 AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGET 156
A S + +G L Y P I YQC + G
Sbjct: 120 AGVSLVRVRGRPL------MRHTNYSFSPWHGFTIHRAKFIQSQD--YQCSA--LMGGRK 169
Query: 157 RLSAT 161
+S +
Sbjct: 170 VMSIS 174
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 41.3 bits (97), Expect = 4e-05
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + +G A + C + P+ SW+ EE+ T +D ++
Sbjct: 100 REVVSPQEFKQGEDAEVVCRVSSSPAPAV--------SWLYH-NEEV----TTISDNRFA 146
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
+L + L I ++ D G Y+C
Sbjct: 147 MLANNNLQILNINKSDEG--IYRCE 169
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 41.1 bits (96), Expect = 5e-05
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 24/125 (19%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIMD-----------EHVLKGNSAVLKCHIPSFVADYV 97
+ G Y+ S + + + D V++G AVL C I
Sbjct: 62 NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD--PALK 119
Query: 98 AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGET 156
S + + G ++ Y P IR D Y C+T T
Sbjct: 120 DSVSLMREGGRQV------LRKTVYFFSPWRGFIIRKAKVLDSNT--YVCKTMVNGREST 171
Query: 157 RLSAT 161
Sbjct: 172 STGIW 176
Score = 30.3 bits (68), Expect = 0.23
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
++G +A + C V + +L + + S L +
Sbjct: 195 KLVRIRGEAAQIVCSA---TNAEVGFNVILKRGDTKLEIPLN-SDFQDNYYKKVRALSLN 250
Query: 134 DVGPED-GYKSYQCR 147
V +D G Y C
Sbjct: 251 AVDFQDAG--IYSCV 263
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 39.5 bits (92), Expect = 5e-05
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 61 DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTD 119
F ++Q+ TV ++G +A+L C + + W + + L+ D D
Sbjct: 9 QFPLTQNVTV-------VEGGTAILTCRVDQNDNTSL---QWSNPAQQTLYFDDKKALRD 58
Query: 120 GKYLVLPSGE----LHIRDVGPED-GYKSYQC 146
+ ++ + + + DV D G Y C
Sbjct: 59 NRIELVRASWHELSISVSDVSLSDEGQ--YTC 88
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 41.0 bits (96), Expect = 6e-05
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 34/130 (26%)
Query: 51 DGGQYQ--IDNQD-FVVSQSYTVNI----------MDEHVLKGNSAVLKCHI-----PSF 92
D G Y+ + + + I + +G A + C + P+
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV 130
Query: 93 VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHR 151
SW+ EE+ T +D ++ +L + L I ++ D G Y+C +
Sbjct: 131 --------SWLYH-NEEV----TTISDNRFAMLANNNLQILNINKSDEGI--YRCEGRVE 175
Query: 152 LTGETRLSAT 161
GE
Sbjct: 176 ARGEIDFRDI 185
Score = 32.9 bits (75), Expect = 0.039
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 24/81 (29%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS- 127
+ +G C P+ SW + G+ + + KY++ S
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAI--------SWFRN-GKLI------EENEKYILKGSN 247
Query: 128 GELHIRDVGPED-GYKSYQCR 147
EL +R++ D G Y CR
Sbjct: 248 TELTVRNIINSDGGP--YVCR 266
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 40.6 bits (95), Expect = 7e-05
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 36/118 (30%)
Query: 50 TDGGQY--QIDNQDFVVSQSYTVNI------------MDEHVLKGNSAVLKCHI-----P 90
D G Y + + TVN+ + +G AV+ C + P
Sbjct: 72 DDAGIYKCVVTA-EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 91 SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ W D+ D +++VL + L IR + D G +Y+C
Sbjct: 131 TI--------IWKHKGR-----DVILKKDVRFIVLSNNYLQIRGIKKTDEG--TYRCE 173
Score = 38.7 bits (90), Expect = 3e-04
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGE 129
+ G S C + D SW S GE+L + V+ S
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDI--SWFSPNGEKL-----SPNQQRISVVWNDDDSST 63
Query: 130 LHIRDVGPED-GYKSYQC 146
L I + +D G Y+C
Sbjct: 64 LTIYNANIDDAGI--YKC 79
Score = 36.8 bits (85), Expect = 0.002
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 17/94 (18%)
Query: 73 MDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
++ G S L C P+ SW D GE + + E + S
Sbjct: 204 VNATANLGQSVTLVCDADGFPEPTM--------SWTKD-GEPIENE-EEDDEKHIFSDDS 253
Query: 128 GELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
EL IR+V D Y C +++ GE S
Sbjct: 254 SELTIRNVDKND-EAEYVCIAENKA-GEQDASIH 285
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 39.8 bits (93), Expect = 1e-04
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 21/85 (24%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ +G AV+ C + P+ W + + D +++
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTI--------IWKHKGRD-----VILKKDVRFI 150
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
VL + L IR + D G Y+C
Sbjct: 151 VLSNNYLQIRGIKKTDEGT--YRCE 173
Score = 34.0 bits (78), Expect = 0.012
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 14/79 (17%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP----SGE 129
+ G S C + A + SW S GE+L + V+ S
Sbjct: 11 QGEISVGESKFFLCQVAG-DAKDKDI-SWFSPNGEKL-----SPNQQRISVVWNDDDSST 63
Query: 130 LHIRDVGPED-GYKSYQCR 147
L I + +D G Y+C
Sbjct: 64 LTIYNANIDDAG--IYKCV 80
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 39.8 bits (93), Expect = 1e-04
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV--DMTESTDGKYLVLPSGELHIRD 134
V KG +A+L+C P WI D G L M+ + ++ G L I +
Sbjct: 120 VAKGETALLECGPPK--GIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 135 VGPED-GYKSYQC 146
V P D G +Y+C
Sbjct: 177 VEPIDEG--NYKC 187
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 39.6 bits (92), Expect = 1e-04
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 36 SFVSDHLDVVSWADTDGGQYQI-----DNQDFVVSQSYTVNIM----DEHVLKGNSAVLK 86
+ + +D G+Y + + EH+ +G +A+L
Sbjct: 45 ALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104
Query: 87 CHIPSF--VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGY 141
C S V D+ +W E + ++ ++ V S ELHI ++ E
Sbjct: 105 CKSESVPPVTDW----AWYKITDSE-DKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159
Query: 142 KSYQCR 147
Y+C
Sbjct: 160 GQYRCN 165
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 39.0 bits (90), Expect = 2e-04
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 41 HLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHIP 90
++ VS+ + + + + V I + G +KC +
Sbjct: 57 TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 116
Query: 91 SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150
+ + E D K L S E+ V ED K CR K
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVLVCRAKL 175
Query: 151 RLTGE 155
+
Sbjct: 176 HIDEM 180
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 37.9 bits (88), Expect = 5e-04
Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 30/117 (25%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNIM---------DEHVLKGNSAVLKCHI-----PSFV 93
+DGG Y N+ + + + +E + L C P
Sbjct: 68 SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEI- 126
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPED-GYKSYQC 146
+W F + +S DG+ V S LHI+DV D G Y C
Sbjct: 127 -------TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR--YDC 174
Score = 30.9 bits (70), Expect = 0.11
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 24/81 (29%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS- 127
+ +G C P+ SW + G+ + + KY++ S
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAI--------SWFRN-GKLI------EENEKYILKGSN 57
Query: 128 GELHIRDVGPED-GYKSYQCR 147
EL +R++ D G Y CR
Sbjct: 58 TELTVRNIINSDGG--PYVCR 76
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 37.8 bits (88), Expect = 5e-04
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 23/85 (27%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T ++ +++G AVL C PS SWI L + +
Sbjct: 104 TRPPINVKIIEGLKAVLPCTTMGNPKPSV--------SWIKG-DSAL------RENSRIA 148
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
VL SG L I +V ED G Y+C
Sbjct: 149 VLESGSLRIHNVQKEDAGQ--YRCV 171
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T + L A C + P SW + + + D +Y
Sbjct: 11 TTPLETVDALVEEVATFMCAVESYPQPEI--------SWTRN-KILI-----KLFDTRYS 56
Query: 124 VLPSG-ELHIRDVGPED-GYKSYQCR 147
+ +G L I V D G Y C
Sbjct: 57 IRENGQLLTILSVEDSDDG--IYCCT 80
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 36.9 bits (85), Expect = 6e-04
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVL 125
S T + V +G + LKC + W++ G +F+ + + KY +L
Sbjct: 3 SLTNHTETITVEEGQTLTLKCVTSLRKNSSL---QWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 126 PS----GELHIRDVGPED-GYKSYQC 146
+ + +V +D G Y+C
Sbjct: 60 HHSANQLSITVPNVTLQDEG--VYKC 83
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 37.9 bits (88), Expect = 6e-04
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
D V G AV++C P SW D G L + + + G+L I
Sbjct: 120 DVMVAVGEPAVMECQPPR--GHPEPTISWKKD-GSPL------DDKDERITIRGGKLMIT 170
Query: 134 DVGPED-GYKSYQC 146
D G Y C
Sbjct: 171 YTRKSDAG--KYVC 182
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 37.4 bits (86), Expect = 9e-04
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 35/168 (20%)
Query: 19 DVFVIKGNAAVFKCNLPSFVS---------------DHLDVVSWADTDGGQYQIDNQDFV 63
++ V G+ C P FV + T G Y N + +
Sbjct: 21 ELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80
Query: 64 VSQSY---------TVNIMDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVD 113
S Y + + + + A+++C + D V+ S I G+ L
Sbjct: 81 TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP----LTDPQVSQYSLIECDGKSL--- 133
Query: 114 MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
TD ++ P + I++V +C + T T
Sbjct: 134 ---PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFT 178
Score = 28.9 bits (64), Expect = 0.80
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 26/132 (19%)
Query: 51 DGGQYQ---IDNQDFVVSQSYTVNIMDEH--------------VLKGNSAVLKCHIPSFV 93
+ + ++ S +T+ + + + KG++ + C I
Sbjct: 157 HRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDV- 215
Query: 94 ADYVAVESWISDQGEELFVDMTEST---DGKYLVLPSGELHIRDVGPED-GYKSYQCRTK 149
W+ + + + G + L I +D G + C
Sbjct: 216 -STSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGV--FMCYAN 272
Query: 150 HRLTGETRLSAT 161
+ G ++ T
Sbjct: 273 NTF-GSANVTTT 283
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 35.8 bits (83), Expect = 0.001
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
S V + V G+ L+C + D V +W+ D G +L + +
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCR----LRDDVQSINWLRD-GVQL-------AESNRTRIT 52
Query: 127 SGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
E+ ++D P D G Y C T G +
Sbjct: 53 GEEVEVQDSVPADSG--LYACVTSSPS-GSDTTYFS 85
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 36.7 bits (84), Expect = 0.001
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVLPSGE 129
DE V+ G + VLKC + + W + + L+ + D + ++ S
Sbjct: 44 WTSDETVVAGGTVVLKCQVKD---HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 130 ----LHIRDVGPED-GYKSYQC 146
+ I +V D G Y C
Sbjct: 101 HELSISISNVALADEGE--YTC 120
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 37.5 bits (87), Expect = 0.001
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 20/85 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + V + +A + C P +W D + +++G+
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDPEI--------TWFKD-FLPVDPS---ASNGRIK 159
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
L SG L I D G Y+C
Sbjct: 160 QLRSGALQIESSEETDQG--KYECV 182
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 69 TVNIMDEHVLKGNSAVLKCH-IPSFVADYV--AVESWISDQGEELFVDMTEST------D 119
T+ + V + N+ +L H +P + + + D+ FV +
Sbjct: 3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYS 62
Query: 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
G+ ++ +G L + + +D Y T+ +
Sbjct: 63 GREIIYSNGSLLFQMITMKDM-GVYTLDMTDENYRRTQATVR 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 71 NIMDEHVLKGNSAVLKCHI----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
G++ ++C + V W+S E++ + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKV--------WVSPSNEQV----LSQGSNGSVSVR 299
Query: 127 SGELHIRDVGPED-GYKSYQC 146
+G+L + V ED G Y C
Sbjct: 300 NGDLFFKKVQVEDGG--VYTC 318
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 35.2 bits (81), Expect = 0.002
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V G+ L+C + D V +W+ D G +L + + E+ +RD
Sbjct: 21 VHPGDLLQLRCR----LRDDVQSINWLRD-GVQL-------VESNRTRITGEEVEVRDSI 68
Query: 137 PED-GYKSYQCRTKHRLTGETRLSAT 161
P D G Y C T G +
Sbjct: 69 PADSG--LYACVTSSPS-GSDTTYFS 91
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 36.7 bits (85), Expect = 0.002
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%)
Query: 73 MDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP- 126
+E + L C P +W F + +S DG+ V
Sbjct: 8 KNETTYENGQVTLVCDAEGEPIPEI--------TWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 127 --SGELHIRDVGPEDGYKSYQCR 147
S LHI+DV D + Y C
Sbjct: 60 HGSSSLHIKDVKLSDSGR-YDCE 81
Score = 27.5 bits (61), Expect = 2.4
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 26/114 (22%)
Query: 50 TDGGQY--QIDNQDFVVSQSYTVNIMDE----------HVLKGNSAVLKCHIPSFVADYV 97
+D G+Y + ++ +S ++I + +GN + C ++
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD---VKSNPP 129
Query: 98 AVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPED-GYKSYQCR 147
A W D L +G L I D G Y C
Sbjct: 130 ASIHWRRD-KLVL----PAKNTTNLKTYSTGRKMILEIAPTSDNDFGR--YNCT 176
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 36.7 bits (85), Expect = 0.002
Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 24/127 (18%)
Query: 50 TDGGQYQ---------------IDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVA 94
+D G+Y + ++ + S+ + D H G +C I
Sbjct: 71 SDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEP 130
Query: 95 DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG 154
V SW D GE L D T + L I Y C + L G
Sbjct: 131 LQV---SWYKD-GELLKDDANLQT---SFIHNVATLQILQTDQSHV-GQYNCSASNPL-G 181
Query: 155 ETRLSAT 161
SA
Sbjct: 182 TASSSAK 188
Score = 35.5 bits (82), Expect = 0.005
Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 39/132 (29%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFV 93
D G Y N S S ++ + LKG L+C +
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV- 416
Query: 94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPED-GYKSYQCRTK 149
SW D EL + KY ++ +HI +V D G YQC+
Sbjct: 417 -------SWHKD-KREL------RSGKKYKIMSENFLTSIHILNVDSADIGE--YQCKAS 460
Query: 150 HRLTGETRLSAT 161
+ + G +
Sbjct: 461 NDV-GSDTCVGS 471
Score = 33.6 bits (77), Expect = 0.020
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 22/81 (27%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-S 127
G L+C + +W + +L + K
Sbjct: 14 HVEAAIGEPITLQCKVDGTPEIRI--------AWYKE-HTKL----RSAPAYKMQFKNNV 60
Query: 128 GELHIRDVGPED-GYKSYQCR 147
L I V D G Y C+
Sbjct: 61 ASLVINKVDHSDVG--EYTCK 79
Score = 30.9 bits (70), Expect = 0.17
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 24/101 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ D + G L+ I S +W D E+ +
Sbjct: 481 VKKLSDISTVVGEEVQLQATIEGAEPISV--------AWFKD-KGEIVRE-----SDNIW 526
Query: 124 VLPS---GELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
+ S L P + K Y C+ K+ G AT
Sbjct: 527 ISYSENIATLQFSRAEPANAGK-YTCQIKNEA-GTQECFAT 565
Score = 30.2 bits (68), Expect = 0.33
Identities = 30/189 (15%), Positives = 44/189 (23%), Gaps = 60/189 (31%)
Query: 19 DVFVIKGNAAVFKCNLPSF---------------VSDHLDVVSWADT-----------DG 52
DV G F+C + +L +
Sbjct: 110 DVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHV 169
Query: 53 GQYQ--IDNQDFVVSQSYTVNIMDEH-------------VLKGNSAVLKCH-----IPSF 92
GQY N S S + + + + G S KCH
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI 229
Query: 93 VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL 152
+W D E+ LV + L + V D Y C +
Sbjct: 230 --------TWAKD-NREIRPGGNYKM---TLVENTATLTVLKVTKGDA-GQYTCYASNVA 276
Query: 153 TGETRLSAT 161
G+ SA
Sbjct: 277 -GKDSCSAQ 284
Score = 29.4 bits (66), Expect = 0.56
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 33/116 (28%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM-----------DEHVLKGNSAVLKCHI-----PSF 92
D GQY N S S + + V + +C I
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 323
Query: 93 VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
W D E+ S V L + ++ ED G Y C
Sbjct: 324 --------LWYKD-ETEIQES---SKFRMSFVESVAVLEMYNLSVEDSGD--YTCE 365
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 36.2 bits (83), Expect = 0.003
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 65 SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVE----SWISDQGEELFVDMTESTDG 120
+ + E L+G L+C + +W + V E T
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKN-DSARTVPGEEET-- 74
Query: 121 KYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ G L + ED G +Y C T++ + ++S
Sbjct: 75 -RMWAQDGALWLLPALQEDSG--TYVCTTRNA-SYCDKMSIE 112
Score = 35.0 bits (80), Expect = 0.006
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQG---EELFVDMTESTDGKYLVLPSGE---- 129
G+ + C + + W + E + + + + E
Sbjct: 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297
Query: 130 --LHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
L V ED + ++C + L L T
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTL-SFQTLRTT 330
Score = 30.8 bits (69), Expect = 0.16
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 25/128 (19%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM------------DEHVLKGNSAVLKCH-IPSFVAD 95
D G Y N + S + + + + S VL C + F D
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151
Query: 96 YVAVE-SWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLT 153
V+ W D L + + V + L + DV ED GY Y+C
Sbjct: 152 KTDVKIQWYKD-SLLL----DKDNEKFLSVRGTTHLLVHDVALEDAGY--YRCVLTFAH- 203
Query: 154 GETRLSAT 161
+ + T
Sbjct: 204 EGQQYNIT 211
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 34.7 bits (79), Expect = 0.003
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDMTESTDGKYLV 124
TV + + G+ C S + W D E+ G L+
Sbjct: 14 TVQPETQSAIXGSDVSFTCSAASSSDSPMTFA-WXXDNEALQDAEMENYAHLRAQGGELM 72
Query: 125 LPSGELHIRDVGPED-GYKSYQCRTKHRL 152
+ L +R+V G YQC +
Sbjct: 73 EYTTILRLRNVEFTSEG--XYQCVISNHF 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.004
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 49 DTDGGQYQIDNQD--FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVES----- 101
D + G++Q +D V ++ N + V ++L D++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----KEEIDHIIMSKDAVSG 63
Query: 102 -----WI-SDQGEEL---FVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSY-QCRTK 149
W + EE+ FV+ + K+L+ P + P + Y + R +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDR 118
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 35.3 bits (81), Expect = 0.004
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD-----QGEELFVDMTESTDGK 121
+ N + +G + L+C + + V W+ D + + D +
Sbjct: 4 PFVGNPGNITGARGLTGTLRCQLQV-QGEPPEV-HWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 122 YLVLPSGELHIRDVGPED-GYKSYQCR 147
+ +L I + D G YQC
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQ--YQCL 86
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 34.5 bits (79), Expect = 0.005
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 25/100 (25%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS- 127
+H L G +KC I P + +W + + T G+Y V
Sbjct: 22 TQHALHGEKGQIKCFIRSTPPPDRI-------AWSWKENV-----LESGTSGRYTVETIS 69
Query: 128 ------GELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
L I ++ D Y C + G
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSF-GSDTEIIR 108
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 34.9 bits (80), Expect = 0.006
Identities = 16/79 (20%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL----FVDMTESTDGKYLVLPSGE 129
D V + S L C F + V W QG + + + S
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRV---EWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66
Query: 130 LHIRDVGPED-GYKSYQCR 147
+ V +D G Y C
Sbjct: 67 ITFSSVTRKDNG--EYTCM 83
Score = 30.7 bits (69), Expect = 0.17
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 23/90 (25%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI------PSFVADYVAVESWISDQGEELFVDMTEST---- 118
+ V GN AVL C + SW D G + + T
Sbjct: 108 PTISVPSSVTIGNRAVLTCSEHDGSPPSEY--------SWFKD-GISMLTADAKKTRAFM 158
Query: 119 -DGKYLVLPSGELHIRDVGPED-GYKSYQC 146
+ SG+L V D G Y C
Sbjct: 159 NSSFTIDPKSGDLIFDPVTAFDSGE--YYC 186
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 35.0 bits (80), Expect = 0.007
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
G++ L C P + W+ D G L + +++ L + +
Sbjct: 20 FGSGDAVELSCPPPG--GGPMGPTVWVKD-GTGL-------VPSERVLVGPQRLQVLNAS 69
Query: 137 PED-GYKSYQCR 147
ED G +Y CR
Sbjct: 70 HEDSG--AYSCR 79
Score = 31.5 bits (71), Expect = 0.12
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 42/128 (32%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNIM---------------DEHVLKGNSAVLKCHI---- 89
D G Y ++N+ + Q+YT++++ ++ + G+ C +
Sbjct: 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250
Query: 90 -PSFVADYVAVESWISD---------QGEELFVDMTESTDGKYLVLPSGELHIRDVGPED 139
P W+ +V + ++ L + +V ED
Sbjct: 251 QPHI--------QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Query: 140 -GYKSYQC 146
G Y C
Sbjct: 303 AGE--YTC 308
Score = 31.1 bits (70), Expect = 0.12
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 65 SQSYTVNIMDEHVLKGNSAVLKCH-----IPSFVADYVAVESWISDQGEELFVDMTESTD 119
++ ++ V N+ +C PS SW+ + G E +
Sbjct: 123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTPSI--------SWLKN-GREFRGEHRIG-- 171
Query: 120 GKYLVLPSGELHIRDVGPED-GYKSYQCR 147
G L L + V P D G +Y C
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRG--NYTCV 198
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 34.8 bits (80), Expect = 0.008
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 23/80 (28%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ G++ ++ C P+ WI + ++ L G
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNI--------YWIKN-QTKV------DMSNPRYSLKDG 163
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L I + ED G Y+C
Sbjct: 164 FLQIENSREEDQG--KYECV 181
Score = 26.7 bits (59), Expect = 3.4
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
++ V G A C PS W + G+++ T +Y
Sbjct: 10 IRKPQNQGVRVGGVASFYCAARGDPPPSI--------VWRKN-GKKV-----SGTQSRYT 55
Query: 124 VLPS-GELHIRDVGPEDGYK---SYQCR 147
VL G + I + P + Y+C
Sbjct: 56 VLEQPGGISILRIEPVRAGRDDAPYECV 83
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 33.1 bits (76), Expect = 0.008
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 22/92 (23%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
V G+ AV + W G ++ S KY + G H
Sbjct: 17 SVEVAAGSPAVFEAE----TERAGVKVRWQRG-GSDI------SASNKYGLATEGTRHTL 65
Query: 132 -IRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+R+VGP D G SY G +++
Sbjct: 66 TVREVGPADQG--SYAVI-----AGSSKVKFD 90
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 34.4 bits (78), Expect = 0.010
Identities = 25/174 (14%), Positives = 40/174 (22%), Gaps = 56/174 (32%)
Query: 19 DVFVIKGNAAVFKCNLPS------FVSDHLDVVSWADT---------------------- 50
+ G KC +D +VV+W
Sbjct: 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYT 97
Query: 51 ---DGGQYQ--IDNQDFVVSQSYTVNI-----------MDEHVLKGNSAVLKCHIPSFVA 94
+Y + ++ Q + + L C I A
Sbjct: 98 SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILY--A 155
Query: 95 DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ +W + +EL DG L I + ED G Y C
Sbjct: 156 KHYNNITWYKN-NQEL------IIDGTKYSQSGQNLIIHNPELEDSGR--YDCY 200
Score = 33.3 bits (75), Expect = 0.025
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 76 HVLKGNSAVLKCHIPSFVADYVAVE-SWISDQGEELFVDMTESTDGKY-LVLPSGELHIR 133
+V G A + C S V W + G + +D + + L+
Sbjct: 239 NVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298
Query: 134 DVGPEDGYKSYQCRTKHRLTGETRLSAT 161
+V E +Y CR + + L+ T
Sbjct: 299 NVTEEYIGNTYTCRGHNYY-FDKTLTTT 325
Score = 31.7 bits (71), Expect = 0.096
Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 49 DTDGGQYQIDNQDFVVSQSYTV--------NIMDEHVLKGNSAVLKCHIPSFVADYVAVE 100
+ + ++ +D + ++ M++ G KC D +
Sbjct: 5 ENEITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIE---DSLLSH 61
Query: 101 SWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
+ + + ++ + +G+L I + D ++ Y C
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLC 107
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 33.1 bits (76), Expect = 0.010
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 25/97 (25%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
D + +G + C P +W G ++ G++ + +
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEV--------TWSCG-GRKI----HSQEQGRFHIENTD 60
Query: 129 E---LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ L I DV +D G Y + G +
Sbjct: 61 DLTTLIIMDVQKQDGG--LYTLSLGNEF-GSDSATVN 94
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 34.5 bits (79), Expect = 0.010
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 70 VNIMDEHVLKGNSAVLKCH-----IPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV 124
++ V N+ +C PS SW+ + G E + G L
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSI--------SWLKN-GREFRGE--HRIGGIKLR 68
Query: 125 LPSGELHIRDVGPED-GYKSYQCR 147
L + V P D G +Y C
Sbjct: 69 HQQWSLVMESVVPSDRG--NYTCV 90
Score = 28.4 bits (63), Expect = 1.0
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 29/123 (23%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNIMDEH---------------VLKGNSAVLKCHI--- 89
+D G Y ++N+ + Q+YT+++++ + G+ C +
Sbjct: 82 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 141
Query: 90 --PSF--VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSY 144
P + S + G + V L + +V D G Y
Sbjct: 142 AQPHIQWLKHVEVNGSKVGPDGTPYVT--VLKSWISESVEADVRLRLANVSERDGGE--Y 197
Query: 145 QCR 147
CR
Sbjct: 198 LCR 200
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 34.0 bits (78), Expect = 0.011
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 17/80 (21%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ V + +A + C P +W D + + G
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEI--------TWFKD-FLPVDTSNNNGRIKQLRSESIG 167
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L I D G Y+C
Sbjct: 168 ALQIEQSEESDQGK--YECV 185
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 33.1 bits (76), Expect = 0.012
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T N+ ++ G S + C P W D E L D +
Sbjct: 14 TGNLENQTTSIGESIEVSCTASGNPPPQI--------MWFKD-NETL------VEDSGIV 58
Query: 124 VLPSG-ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ L IR V ED G Y C+ L G ++ A
Sbjct: 59 LKDGNRNLTIRRVRKEDEG--LYTCQACSVL-GCAKVEAF 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 34.3 bits (78), Expect = 0.013
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
+ V G+ +L+C + + WI + E +T K LPS L +
Sbjct: 167 NASVDVGDDVLLRCQVEGRGLEQA---GWILTELE------QSATVMKSGGLPSLGLTLA 217
Query: 134 DVGPEDGYKSYQC 146
+V + K+ C
Sbjct: 218 NVTSDLNRKNVTC 230
Score = 32.0 bits (72), Expect = 0.069
Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 17/111 (15%)
Query: 48 ADTDGGQYQ--------IDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAV 99
+D + V+ S+ ++ ++ + + + A +
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSL-- 278
Query: 100 ESWISDQG---EELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
W+ + E F+ + G L + + G +Y
Sbjct: 279 -RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG--NYTL 326
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 34.4 bits (78), Expect = 0.013
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 24/102 (23%)
Query: 50 TDGGQY--QIDNQDFVVSQSYTVNIM--DEHVLKGNSAVLKCHIPSFVADYVAVESWISD 105
D Y ++++Q V D H+L+G S L P + V S
Sbjct: 77 EDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV---QCRSP 133
Query: 106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
+G+ + L + + +D G ++ C
Sbjct: 134 RGK--------------NIQGGKTLSVSQLELQDSG--TWTC 159
Score = 27.1 bits (59), Expect = 3.2
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 79 KGNSAVLKCHIPS--------FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-- 128
KG++ L C ++ + + + + + D + + G
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 129 ELHIRDVGPEDGYKSYQCR 147
L I+++ ED +Y C
Sbjct: 68 PLIIKNLKIED-SDTYICE 85
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 33.7 bits (77), Expect = 0.017
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 19/80 (23%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V N+ +C P+ W+ + G+E + G +
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMPTM--------RWLKN-GKEFKQE--HRIGGYKVRNQHW 76
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L + V P D G +Y C
Sbjct: 77 SLIMESVVPSDKG--NYTCV 94
Score = 27.9 bits (62), Expect = 1.2
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 24/120 (20%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNIM---------------DEHVLKGNSAVLKCHIPSF 92
+D G Y ++N+ ++ +Y ++++ + + G C + S
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSD 145
Query: 93 VADYV----AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
++ VE S G + + + L + +V D G Y C+
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE--YICK 203
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 32.4 bits (74), Expect = 0.018
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---L 130
VL+G S +C + A A W G+ + + ++ G L
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPA--MWTVG-GKTV------GSSSRFQATRQGRKYIL 67
Query: 131 HIRDVGPED-GYKSYQCRTKHRLTGETRLS 159
+R+ P D G + LT + L
Sbjct: 68 VVREAAPSDAG--EVVFSVR-GLTSKASLI 94
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 33.9 bits (77), Expect = 0.018
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 29/117 (24%)
Query: 51 DGGQYQ--IDNQDFVVSQSYTVNI--------------MDEHVLKGNSAVLKCHIPSFVA 94
D G Y + N + + + + + L C F
Sbjct: 73 DSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK 132
Query: 95 DY---VAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ + W D + L D + L + +V + G Y C
Sbjct: 133 NENNELPKLQWYKD-CKPL------LLDNIHFSGVKDRLIVMNVAEKHRGN--YTCH 180
Score = 27.8 bits (61), Expect = 1.9
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V C + +W D + V +++ + +L
Sbjct: 17 SSANEIDVRPCPLNPNEHKGTI--TWYKD-DSKTPVSTEQAS---RIHQHKEKLWFVPAK 70
Query: 137 PED-GYKSYQCRTKHRLTGETRLSAT 161
ED G Y C ++ + R+ +
Sbjct: 71 VEDSG--HYYCVVRNS-SYCLRIKIS 93
Score = 27.4 bits (60), Expect = 2.1
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWI--------SDQGEELFVDMTESTDGKYLVLPSG 128
V G+ L C++ ++D W D E+ K
Sbjct: 221 VDLGSQIQLICNVTGQLSDIA---YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLIT 277
Query: 129 ELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
L+I ++ + C K+ G
Sbjct: 278 VLNISEIESRFYKHPFTCFAKNTH-GIDAAYIQ 309
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 32.3 bits (74), Expect = 0.019
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 23/85 (27%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + D V++G VL+C + P +W+ + G+ + + G
Sbjct: 15 SSVLKDCAVIEGQDFVLQCSVRGTPVPRI--------TWLLN-GQPIQYARSTCEAG--- 62
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
ELHI+D PED G +Y C
Sbjct: 63 ---VAELHIQDALPEDHG--TYTCL 82
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.3 bits (76), Expect = 0.019
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 10/88 (11%)
Query: 80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRD 134
G L D + W ++ T Y + +G L I+
Sbjct: 14 GQDINLDIPSFQMSDDIDDI-KWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72
Query: 135 VGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ +D Y+ G+ L
Sbjct: 73 LKTDDQD--IYKVSIYDT-KGKNVLEKI 97
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 33.4 bits (76), Expect = 0.019
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 24/102 (23%)
Query: 50 TDGGQY--QIDNQDFVVSQSYTVNIM--DEHVLKGNSAVLKCHIPSFVADYVAVESWISD 105
D Y ++++Q V D H+L+G S L P + V S
Sbjct: 78 EDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV---QCRSP 134
Query: 106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
+G+ + L + + +D G ++ C
Sbjct: 135 RGK--------------NIQGGKTLSVSQLELQDSG--TWTC 160
Score = 26.9 bits (59), Expect = 2.9
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 79 KGNSAVLKCHI-----PSFV---ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-- 128
KG++ L C F ++ + + + + + D + + G
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 129 ELHIRDVGPEDGYKSYQCR 147
L I+++ ED +Y C
Sbjct: 69 PLIIKNLKIED-SDTYICE 86
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 33.4 bits (76), Expect = 0.020
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 22/89 (24%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI------PSFVADYVAVESWISDQGEELFVD----MTEST 118
+ GN AVL C + +W D G + + S
Sbjct: 111 PTVNIPSSATIGNRAVLTCSEQDGSPPSEY--------TWFKD-GIVMPTNPKSTRAFSN 161
Query: 119 DGKYLVLPSGELHIRDVGPED-GYKSYQC 146
L +GEL + D G Y C
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGE--YSC 188
Score = 33.0 bits (75), Expect = 0.028
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDMTESTDGKYLVLPSGE 129
+ + + N L C F + V W DQG+ + + ++ +
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRV---EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69
Query: 130 LHIRDVGPED-GYKSYQCR 147
+ + V ED G +Y C
Sbjct: 70 ITFKSVTREDTG--TYTCM 86
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 32.3 bits (74), Expect = 0.021
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
D+ V G L+C ++ W+ D + + KY V+ G +
Sbjct: 17 DQWVAPGEDVELRCE----LSRAGTPVHWLKD-RKAI------RKSQKYDVVCEGTMAML 65
Query: 132 -IRDVGPED-GYKSYQCRTKHRLT 153
IR +D G Y C + +
Sbjct: 66 VIRGASLKDAG--EYTCEVEASKS 87
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 34.0 bits (77), Expect = 0.021
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 31/127 (24%)
Query: 51 DGGQY--QIDNQDFVVSQSYTVNIM-------------DEHVLKGNSAVLKCHIPSFVAD 95
D G Y + S V + G + +
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360
Query: 96 YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTG 154
+ W + G L + + + L I +V D G +Y + +
Sbjct: 361 EI---KWYKN-GIPL--------ESNHTIKAGHVLTIMEVSERDTG--NYTVILTNPI-S 405
Query: 155 ETRLSAT 161
+ + S
Sbjct: 406 KEKQSHV 412
Score = 32.0 bits (72), Expect = 0.076
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T N+ ++ G S + C P W D E L G L
Sbjct: 670 TGNLENQTTSIGESIEVSCTASGNPPPQI--------MWFKD-NETL-----VEDSGIVL 715
Query: 124 VLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ L IR V ED G Y C+ L G ++ A
Sbjct: 716 KDGNRNLTIRRVRKEDEG--LYTCQACSVL-GCAKVEAF 751
Score = 30.5 bits (68), Expect = 0.27
Identities = 25/199 (12%), Positives = 45/199 (22%), Gaps = 48/199 (24%)
Query: 8 VISQYYEAQVYDVFVIKGNAAVFKC-----NLPSFVSDHLDVVSW--------------- 47
+ S + V + K V C NL + +
Sbjct: 126 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 185
Query: 48 -----ADTDGGQYQ--IDNQDFVVSQSYTVNIMDE--------------HVLKGNSAVLK 86
+ G D + ++ + G VL
Sbjct: 186 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 245
Query: 87 CHIPSFVADYVAVESWISD----QGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK 142
C + + + +W Q ++L ++ G + L I V D
Sbjct: 246 CTARTELNVGIDF-NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ-G 303
Query: 143 SYQCRTKHRLTGETRLSAT 161
Y C L + S
Sbjct: 304 LYTCAASSGL-MTKKNSTF 321
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 32.0 bits (73), Expect = 0.023
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---L 130
+ G SA L C VA +W D G++L S+ K V G L
Sbjct: 20 EVQAEAGASATLSCE----VAQAQTEVTWYKD-GKKL------SSSSKVRVEAVGCTRRL 68
Query: 131 HIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
++ G + G Y C G +LS
Sbjct: 69 VVQQAGQAEAG--EYSCE-----AGGQQLSFR 93
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 32.9 bits (75), Expect = 0.026
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVLPSGELHIR 133
E +L G+ A L C + +W G+ G Y V S L
Sbjct: 14 EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSV--SSVLPGC 71
Query: 134 DVGPEDGYKSYQCRTKHRLTGETRLSATK 162
G K++ C + + +
Sbjct: 72 AEPWNHG-KTFTCTAAYPESKTPLTATLS 99
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 32.3 bits (74), Expect = 0.026
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 21/91 (23%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---L 130
+E +G +AVL+C ++ VE W E L ++ + G L
Sbjct: 28 NEEATEGATAVLRCE----LSKMAPVE-WWKG-HETL------RDGDRHSLRQDGARCEL 75
Query: 131 HIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
IR + ED Y C G+ R SA
Sbjct: 76 QIRGLVAEDA-GEYLCM-----CGKERTSAM 100
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 31.6 bits (72), Expect = 0.028
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 30/94 (31%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V G + L C + P W+ D G L + PS
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQI--------HWMKD-GVPLPLP------------PSP 57
Query: 129 ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L + ++GP+D G +Y C H + S
Sbjct: 58 VLILPEIGPQDQG--TYSCVATHSS-HGPQESRA 88
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 33.1 bits (75), Expect = 0.035
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 48 ADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG 107
A + G+ ++Q+ + + G ++C ++ +W +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELENK 267
Query: 108 EELFVDMTESTD--GKYLVLPSGELHIRDVGPEDGYKSYQC 146
+ E + ++ + V D Y C
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY-YTC 307
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 31.5 bits (72), Expect = 0.039
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
D G L+C V++ A W + GEE+ +Y + G+ H
Sbjct: 16 DTTAYCGERVELECE----VSEDDANVKWFKN-GEEI----IPGPKSRYRIRVEGKKHIL 66
Query: 132 -IRDVGPED-GYKSYQCRT 148
I D Y T
Sbjct: 67 IIEGATKADAA--EYSVMT 83
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 32.4 bits (73), Expect = 0.046
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 74 DEHVLKGNSAVLKCHI--PSFVADYVAVESWISDQGEELFVDMTESTDGKYL-------- 123
G+S L C++ P+ +V+ +W ++ Y
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 124 ------VLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
L + L + + ED +Y C G +
Sbjct: 69 AARLGAELRNASLRMFGLRVEDE-GNYTCLFVTFPQGSRSVDIW 111
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 31.3 bits (71), Expect = 0.048
Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 22/92 (23%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---L 130
++ VL C + A W D GEE+ L+ L
Sbjct: 22 YVAAVRLERVVLTCE----LCRPWAEVRWTKD-GEEV------VESPALLLQKEDTVRRL 70
Query: 131 HIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ V ED G Y C + S T
Sbjct: 71 VLPAVQLEDSG--EYLCE-----IDDESASFT 95
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 31.1 bits (71), Expect = 0.050
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 22/97 (22%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
T + + V + +AV C A +W EL GK+ G
Sbjct: 12 TEELTNLQVEEKGTAVFTCK----TEHPAATVTWRKG-LLEL------RASGKHQPSQEG 60
Query: 129 E---LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L I + D +Y C G+ + A
Sbjct: 61 LTLRLTISALEKADSD--TYTCD-----IGQAQSRAQ 90
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 31.1 bits (71), Expect = 0.050
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ D VL+G +A L+C ++ A W L KY + G
Sbjct: 12 QEALKDLEVLEGGAATLRCV----LSSVAAPVKWCYG-NNVLR------PGDKYSLRQEG 60
Query: 129 ELH---IRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ +R++ P+D G Y C G+ SAT
Sbjct: 61 AMLELVVRNLRPQDSG--RYSCS-----FGDQTTSAT 90
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 32.2 bits (72), Expect = 0.052
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 18/103 (17%)
Query: 74 DEHVLKGNSAVLKC-------------HIPSFVADY-VAVESWISDQGEELFVDMTESTD 119
V +GN + C P+F +Y ++++ + +
Sbjct: 145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204
Query: 120 GKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
G+ + L IR D G C GE +
Sbjct: 205 GRASFSGARNLVIRAAKITDAGR--VWCELATGQ-GELDADRS 244
Score = 28.0 bits (61), Expect = 1.6
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V G + L C V SW+ + T+ G Y G +
Sbjct: 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPD---RSTKVFKGNYNWQGEGLGFVESDS 70
Query: 137 PEDGYKSYQCRTKHRLTGETRL 158
++ + + R L
Sbjct: 71 YKESFGDFLGRASVANLAAPTL 92
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 31.2 bits (71), Expect = 0.057
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 22/94 (23%)
Query: 72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH 131
+ VL C ++ +W D G+++ +V G H
Sbjct: 17 KVSLTFTTSERVVLTCE----LSRVDFPATWYKD-GQKV------EESELLVVKMDGRKH 65
Query: 132 ---IRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ + +D G ++CR T
Sbjct: 66 RLILPEAKVQDSG--EFECR-----TEGVSAFFG 92
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 30.7 bits (70), Expect = 0.064
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 26/88 (29%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ D V + A P+ W D G+ + + GKY
Sbjct: 10 VTGLQDTTVSSDSVAKFAVKATGEPRPTA--------IWTKD-GKAI------TQGGKYK 54
Query: 124 VLPSGE---LHIRDVGPED-GYKSYQCR 147
+ L I D G Y C
Sbjct: 55 LSEDKGGFFLEIHKTDTSDSGL--YTCT 80
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 30.8 bits (70), Expect = 0.067
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 23/97 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
T ++ + +G +A L+C ++ VE W E L G+Y + G
Sbjct: 12 TQDLKTKEASEGATATLQCE----LSKVAPVE-WKKG-PETL------RDGGRYSLKQDG 59
Query: 129 ---ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
EL I D+ D G Y C G+ R SAT
Sbjct: 60 TRCELQIHDLSVADAG--EYSCM-----CGQERTSAT 89
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 32.0 bits (73), Expect = 0.068
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + + G S KCH+ +W D E+ L
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKI--------TWAKD-NREIRPGGNYKM---TL 56
Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
V + L + V D G Y C
Sbjct: 57 VENTATLTVLKVTKGDAG--QYTCY 79
Score = 29.7 bits (67), Expect = 0.36
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 26/88 (29%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
LKG L+C + SW D EL + KY
Sbjct: 196 RKKPHPVETLKGADVHLECELQGTPPFQV--------SWHKD-KREL------RSGKKYK 240
Query: 124 VLPSG---ELHIRDVGPED-GYKSYQCR 147
++ +HI +V D G YQC+
Sbjct: 241 IMSENFLTSIHILNVDSADIG--EYQCK 266
Score = 29.3 bits (66), Expect = 0.56
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 22/78 (28%)
Query: 77 VLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-GEL 130
V + +C I W D E+ ES+ + + S L
Sbjct: 111 VKQDEHTRYECKIGGSPEIKV--------LWYKD-ETEI----QESSKFRMSFVESVAVL 157
Query: 131 HIRDVGPED-GYKSYQCR 147
+ ++ ED G Y C
Sbjct: 158 EMYNLSVEDSGD--YTCE 173
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 31.6 bits (71), Expect = 0.072
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 35/116 (30%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNI----------MDEHVLKGNSAVLKCHI------PS 91
+D G YQ + V ++ + + + +D GN LKC
Sbjct: 94 SDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQ 153
Query: 92 FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
F W + + S + +++ E G Y C
Sbjct: 154 F--------EWQKLSDSQTM------PTPWLAEMTSPVISVKNASSEYSGT--YSC 193
Score = 26.2 bits (57), Expect = 4.9
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 76 HVLKGNSAVLKCHIPSFVADYVAVE-SW--------------ISDQGEELFVDMTESTDG 120
KG +A L C D ++ W I G++++ + G
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 121 KYLVLPS------GELHIRDVGPEDGYKSYQCR 147
+ + +++ ++ D +YQC+
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDI-GTYQCK 102
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 30.7 bits (70), Expect = 0.073
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 25/88 (28%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
V++MD+ V +G ++ + P SW+ + + + ++
Sbjct: 9 KVSLMDQSVREGQDVIMSIRVQGEPKPVV--------SWLRN-RQPV-----RPDQRRFA 54
Query: 124 VLPSG---ELHIRDVGPED-GYKSYQCR 147
G L I D G+ Y C+
Sbjct: 55 EEAEGGLCRLRILAAERGDAGF--YTCK 80
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 30.8 bits (70), Expect = 0.073
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 21/92 (22%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---EL 130
D+ V G LKC +++ + + W + G + + V+ G +L
Sbjct: 16 DQTVNLGKEICLKCE----ISENIPGK-WTKN-GLPV------QESDRLKVVQKGRIHKL 63
Query: 131 HIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
I + ED G Y L A
Sbjct: 64 VIANALTEDEG--DYVFAPD---AYNVTLPAK 90
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 30.8 bits (70), Expect = 0.074
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
D+ V G+ + V++ A W+ + G EL +S +Y G+ H
Sbjct: 17 DQQVFVGDRVEMAVE----VSEEGAQVMWMKN-GVEL--TREDSFKARYRFKKDGKRHIL 69
Query: 132 -IRDVGPED-GYKSYQCRT 148
DV ED G YQ T
Sbjct: 70 IFSDVVQEDRG--RYQVIT 86
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 32.0 bits (73), Expect = 0.075
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ + +V ++A L C + V W G+E+ + + G
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIV---KWYRQ-GKEII---ADGLKYRIQEFKGG 60
Query: 129 E--LHIRDVGPEDGYKSYQCR 147
L I V +D YQ R
Sbjct: 61 YHQLIIASVTDDDATV-YQVR 80
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 30.5 bits (69), Expect = 0.093
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 19/80 (23%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V N+ +C P+ W+ + G+E G +
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTM--------RWLKN-GKEF--KQEHRIGGYKVRNQHW 65
Query: 129 ELHIRDVGPED-GYKSYQCR 147
L + V P D G Y C
Sbjct: 66 SLIMESVVPSDKGN--YTCV 83
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 30.4 bits (69), Expect = 0.11
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 26/89 (29%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ VL+G+S L+C I P W + E + + +
Sbjct: 19 IYKPQSKKVLEGDSVKLECQISAIPPPKL--------FWKRN-NEMV-----QFNTDRIS 64
Query: 124 VLPSGE----LHIRDVGPED-GYKSYQCR 147
+ L I+DV +D G Y
Sbjct: 65 LYQDNTGRVTLLIKDVNKKDAG--WYTVS 91
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 31.0 bits (70), Expect = 0.11
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 56/173 (32%)
Query: 19 DVFVIKGNAAVFKCNLPSFVSDHLDVV----------SWADTDGGQYQIDN---QD---- 61
+ +CNL S + + + +Y+I+ +D
Sbjct: 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEY 71
Query: 62 -----FVVSQSYTVNI------------MDEHVLKGNSAVLKCHI-----PSFVADYVAV 99
FV + I E+ +G A++ C P +
Sbjct: 72 HCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW------- 124
Query: 100 ESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDV-GPED-GYKSYQCR 147
W +F + ++ G++ ++ EL+I ++ ED G Y+C
Sbjct: 125 -MWRKK-ENGVFEE-ISNSSGRFFIINKENYTELNIVNLQITEDPGE--YECN 172
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 30.4 bits (68), Expect = 0.12
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-----MTESTDGKYLVLPSG 128
D V G S + V W + +L + + +
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 129 ELHIRDVGPED-GYKSYQCR 147
ELHI D P G SY+C
Sbjct: 73 ELHITDAQPAFTG--SYRCE 90
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 31.4 bits (70), Expect = 0.12
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 32/143 (22%)
Query: 50 TDGGQYQ------IDNQDFVVSQSYTVNIMDEH------------------VLKGNSAVL 85
++ G Y + + F ++++ TV ++ G ++
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 86 KCHI-PSFVADYVAVESW------ISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPE 138
C + SF+ D W D ++ ++ + S + L I+ V E
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306
Query: 139 DGYKSYQCRTKHRLTGETRLSAT 161
D +SY C + GE +A
Sbjct: 307 DLKRSYVCHARSAK-GEVAKAAK 328
Score = 29.8 bits (66), Expect = 0.36
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 68 YTVNIMDE-HVLKGNSAVLKCHIPSFVADYVAVES--------WI-SDQGEELFVDMTES 117
+ ++ M + V + A +KC + + + W + Q +L +
Sbjct: 9 WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR 68
Query: 118 TDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ L R D G +Y C ++ T ++++
Sbjct: 69 LPENRISKEKDVLWFRPTLLNDTG--NYTCMLRNT-TYCSKVAFP 110
Score = 26.8 bits (58), Expect = 3.5
Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 29/125 (23%)
Query: 51 DGGQY--QIDNQDFVVSQSYTVNIMDEH--------------VLKGNSAVLKCHIPSFVA 94
D G Y + N + ++ + ++ + ++ + C
Sbjct: 90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF 149
Query: 95 DYVAVE--SWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHR 151
+W ++ + + ++ L + G Y C +
Sbjct: 150 PSSVKPTITW--------YMGCYKIQNFNNVIPEGMNLSFLIALISNNGN--YTCVVTYP 199
Query: 152 LTGET 156
G T
Sbjct: 200 ENGRT 204
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 31.2 bits (70), Expect = 0.13
Identities = 7/72 (9%), Positives = 14/72 (19%), Gaps = 11/72 (15%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V S L+ + + W+ + + I +
Sbjct: 60 VDVSASITLQVLVDAPGNISC---LWVFKHSS-----LNCQPHFDLQNRGVVSMVILKMT 111
Query: 137 PED-GYKSYQCR 147
G Y
Sbjct: 112 ETQAG--EYLLF 121
Score = 30.0 bits (67), Expect = 0.34
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 63 VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL----FVDMTEST 118
++Q+ + + G ++C ++ +W + + L + +M+ +
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELE-NKALEEGNYFEMSTYS 281
Query: 119 DGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ ++ + V D G Y C
Sbjct: 282 TNRTMI-RILFAFVSSVARNDTG--YYTCS 308
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 30.9 bits (69), Expect = 0.13
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 13/110 (11%)
Query: 48 ADTDGGQYQIDNQDFVVSQSYTVNIMDE-----HVLKGNSAVLKCHIPSFVADYVAVESW 102
A + YQ VV +++ + G VL C + + + +W
Sbjct: 83 AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF-NW 141
Query: 103 ISDQGEELFVDMTEST----DGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ + G + L I V D G Y C
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG--LYTCA 189
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 30.2 bits (68), Expect = 0.14
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 19/82 (23%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
D V KG A L C P+ W GE + D + + +LPSG
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTI--------EWYKG-GERVETDKDDPRSHRM-LLPSG 67
Query: 129 ELHIRDVGPEDGYKS----YQC 146
L + + Y C
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVC 89
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 31.0 bits (70), Expect = 0.16
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 26/97 (26%)
Query: 73 MDEHVLKGNSAVLKCHI------PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
+ V + +LKC + W D E+ S D K+
Sbjct: 14 LSWEVTGECNVLLKCKVANIKKETHI--------VWYKD-EREI------SVDEKHDFKD 58
Query: 127 SG-ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L I + +D G Y+ K G+ +
Sbjct: 59 GICTLLITEFSKKDAG--IYEVILKDDR-GKDKSRLK 92
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 30.3 bits (68), Expect = 0.17
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST---DGKYLVLPSGELHI 132
G+ L D V W G + +L +G+L I
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEV-RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 133 RDVGPED-GYKSYQCRTK 149
+++ +D G +Y
Sbjct: 66 KNLTRDDSG--TYNVTVY 81
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 29.7 bits (67), Expect = 0.18
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 27/97 (27%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V+ G A LKC + P W G++L + + G
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVV--------VWEKG-GQQL------AASERLSFPADG 66
Query: 129 E---LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L + P D G Y CR ++ GE +A
Sbjct: 67 AEHGLLLTAALPTDAG--VYVCRARNAA-GEAYAAAA 100
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 30.3 bits (68), Expect = 0.22
Identities = 18/153 (11%), Positives = 34/153 (22%), Gaps = 43/153 (28%)
Query: 22 VIKGNAAVFKCNLPSF-----------------VSDHLDVVSWADTDGGQY--QIDNQDF 62
V + C + + + S + D G+Y Q
Sbjct: 13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGR 72
Query: 63 -------VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT 115
+ + + +G L+CH Y + + G+
Sbjct: 73 SDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNV--LYYRN-GKAFKFFHW 129
Query: 116 ESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ L I G +Y C
Sbjct: 130 -----------NSNLTILKTNISHNG--TYHCS 149
Score = 30.3 bits (68), Expect = 0.28
Identities = 9/74 (12%), Positives = 17/74 (22%), Gaps = 17/74 (22%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
V + + L C + W +G + I
Sbjct: 13 VFQEETVTLHCEVLHLPGSSST--QW--------------FLNGTATQTSTPSYRITSAS 56
Query: 137 PEDGYKSYQCRTKH 150
D + Y+C+
Sbjct: 57 VNDSGE-YRCQRGL 69
Score = 26.4 bits (58), Expect = 5.0
Identities = 18/113 (15%), Positives = 27/113 (23%), Gaps = 27/113 (23%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNIM------------DEHVLKGNSAVLKCHIPSFVAD 95
+ G Y + S +V + +L+GN L C +
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200
Query: 96 YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
+ G + S E I ED G Y C
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTS----------SEYQILTARREDSG--LYWCE 241
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 30.1 bits (68), Expect = 0.23
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 26/83 (31%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V +G+ L+ + P + D G E+ + + + G
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVV--------KFYRD-GAEI------QSSLDFQISQEG 156
Query: 129 E---LHIRDVGPED-GYKSYQCR 147
+ L I + PED G Y
Sbjct: 157 DLYSLLIAEAYPEDSGT--YSVN 177
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 29.2 bits (66), Expect = 0.26
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 27/97 (27%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
V +G SA C P+ +W+ G+ L ST ++ V +
Sbjct: 23 SMTVYEGESARFSCDTDGEPVPTV--------TWLRK-GQVL------STSARHQVTTTK 67
Query: 129 E---LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
I V D G +Y ++ G+ T
Sbjct: 68 YKSTFEISSVQASDEG--NYSVVVENSE-GKQEAEFT 101
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 28.8 bits (65), Expect = 0.27
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 29/80 (36%)
Query: 74 DEHVLKGNSAVLKCH-----IPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
+ ++ G++ VL+C IP + W + L +
Sbjct: 12 SQKLMPGSTLVLQCVAVGSPIPHY--------QWFKN-ELPLTHE------------TKK 50
Query: 129 ELHIRDVGPED-GYKSYQCR 147
+ V E G +Y C
Sbjct: 51 LYMVPYVDLEHQG--TYWCH 68
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 28.9 bits (65), Expect = 0.31
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 20/92 (21%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
D V AV KC + + V + W + G E+ + + G H
Sbjct: 17 DLTVKAAEQAVFKCEVSD---EKVTGK-WYKN-GVEV------RPSKRITISHVGRFHKL 65
Query: 132 -IRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
I DV PED G Y LSA
Sbjct: 66 VIDDVRPEDEG--DYTFVPD---GYALSLSAK 92
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 29.5 bits (66), Expect = 0.35
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
++N + KG + L C+ +F + W +G +
Sbjct: 8 SLNPPWNRIFKGENVTLTCNGNNFFEV--SSTKW--------------FHNGSLSEETNS 51
Query: 129 ELHIRDVGPEDGYKSYQCRTKH 150
L+I + ED Y+C+ +
Sbjct: 52 SLNIVNAKFEDS-GEYKCQHQQ 72
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 28.8 bits (65), Expect = 0.38
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 27/89 (30%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVD----MTESTD 119
I + V +G+ A + + P W + G ++ D
Sbjct: 9 FERIQSQTVGQGSDAHFRVRVVGKPDPEC--------EWYKN-GVKIERSDRIYWYWPED 59
Query: 120 GKYLVLPSGELHIRDVGPED-GYKSYQCR 147
EL IRDV ED S +
Sbjct: 60 NVC------ELVIRDVTGEDSA--SIMVK 80
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 29.7 bits (66), Expect = 0.38
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 10/96 (10%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVE-SWISD-QGEELFVDMTESTDGKYLVLP 126
+VN + V +G + L C V V W + V+
Sbjct: 185 SVNAVQTVVRQGENITLMCI----VIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 127 SGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
LHI ED G Y C + + +
Sbjct: 241 RSILHIPSAELEDSGT--YTCNVTESV-NDHQDEKA 273
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 29.8 bits (66), Expect = 0.39
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 34 LPSFVSDHLDVVSWADTDGGQYQIDNQDFVVS--QSYTVNIMDEHVLKGNSAVLKCHIPS 91
S V + + +++ GQ V + + + G + L+C +
Sbjct: 53 ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 92 FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR 151
+ +EL + + V + ++ CRT+
Sbjct: 113 GAPRANLTVVLLRG-EKELKREPAVGEPA------EVTTTVL-VRRDHHGANFSCRTELD 164
Query: 152 LTGE 155
L +
Sbjct: 165 LRPQ 168
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 28.6 bits (64), Expect = 0.41
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 14/73 (19%)
Query: 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV 135
V G C S W +L + +G L IR+V
Sbjct: 21 SVRPGADVTFICTAKS--KSPAYTLVWTRLHNGKL---------PSRAMDFNGILTIRNV 69
Query: 136 GPED-GYKSYQCR 147
P D G Y C
Sbjct: 70 QPSDAGT--YVCT 80
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 28.4 bits (64), Expect = 0.45
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 17/79 (21%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH-- 131
V G +A + + V + W G+ L + ++ G+ H
Sbjct: 14 GVEVFVGETAHFEIELSE---PDVHGQ-WKLK-GQPL------AASPDCEIIEDGKKHIL 62
Query: 132 -IRDVGPED-GYKSYQCRT 148
+ + G +
Sbjct: 63 ILHNCQLGMTG--EVSFQA 79
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.4 bits (65), Expect = 0.45
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 15/99 (15%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK--------------Y 122
V++G S +L C Y+ G + E + Y
Sbjct: 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPY 71
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
+ G L + + D + Y C + G +A
Sbjct: 72 QLDSQGRLVLAEAQVGDE-RDYVCVVRAGAAGTAEATAR 109
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 29.2 bits (65), Expect = 0.54
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV---LPSGE--LH 131
V G+S L+C I +++ D + ++ L+ LP G+ H
Sbjct: 14 VDVGSSVSLECDFDR---RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFH 70
Query: 132 IRDVGPED-GYKSYQCR 147
I V D G Y+C
Sbjct: 71 IPSVQVRDSG--QYRCL 85
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 28.1 bits (63), Expect = 0.58
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 24/101 (23%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
+ + +G + + P SW + G + K +
Sbjct: 9 IQVPENMSIDEGRFCRMDFKVSGLPAPDV--------SWYLN-GRTV----QSDDLHKMI 55
Query: 124 VLPSGE--LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
V G L V D G Y C K+R GE +
Sbjct: 56 VSEKGLHSLIFEVVRASDAGA--YACVAKNRA-GEATFTVQ 93
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 28.9 bits (64), Expect = 0.58
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIP-SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
+ + G + L C +P + + + + + +G + + + + +
Sbjct: 93 ELMPLPPWQPVGENFTLSCRVPGAGPRASLTL-TLL--RGAQELIRRSFAGEPPRARGAV 149
Query: 128 GELHIRDVGPEDGYKSYQCRTKHRLTGE 155
+ ED ++ CR + L
Sbjct: 150 LTATVL-ARREDHGANFSCRAELDLRPH 176
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.66
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 23/62 (37%)
Query: 82 SAVLKC-----HIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
+ VL C + P V + +G+ + + G LVL + + D
Sbjct: 19 NIVLTCPECKVYPPKIVERF--------SEGD-----VVCALCG--LVL--SD-KLVDTR 60
Query: 137 PE 138
E
Sbjct: 61 SE 62
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 28.1 bits (63), Expect = 0.70
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD----MTESTDGKYLVLPSGE 129
D V +G+SA +C I + V W D L + + G ++
Sbjct: 22 DVDVQEGSSATFRCRISPANYEPV---HWFLD-KTPLHANELNEIDAQPGGYHV------ 71
Query: 130 LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L +R + +D G + G+ R SA
Sbjct: 72 LTLRQLALKDSG--TIYFE-----AGDQRASAA 97
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 28.6 bits (64), Expect = 0.76
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 26/84 (30%)
Query: 74 DEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS- 127
V +G L C + P W+ D G + ++ D Y+ +
Sbjct: 11 KLTVSQGQPVKLNCSVEGMEEPDI--------QWVKD-GAVV-----QNLDQLYIPVSEQ 56
Query: 128 ---GELHIRDVGPED-GYKSYQCR 147
G L ++ V D G Y C+
Sbjct: 57 HWIGFLSLKSVERSDAG--RYWCQ 78
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 28.6 bits (64), Expect = 0.77
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---PSGEL 130
+ +GN + C A A SW D G+ L S + + L
Sbjct: 27 AVYTWEGNQVNITCE---VFAYPSATISWFRD-GQLL----PSSNYSNIKIYNTPSASYL 78
Query: 131 HIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
+ D + +Y C +R+ G+ L
Sbjct: 79 EVTPDSEND-FGNYNCTAVNRI-GQESLEFI 107
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 28.8 bits (64), Expect = 0.80
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT---ESTDGKYLVLPSGELH 131
+ A L+C + + +D +W ++ L D E +G Y S +
Sbjct: 23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSA--SSAVP 80
Query: 132 IRDVGPEDGYKSYQCRTKH 150
+ G + + C +H
Sbjct: 81 VSTQDWLSG-ERFTCTVQH 98
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 27.7 bits (62), Expect = 0.81
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 25/85 (29%)
Query: 72 IMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
IM +G C I + V +W +L KY +
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQV-------TWYFG-VRQL------ENSEKYEITY 53
Query: 127 SGE---LHIRDVGPED-GYKSYQCR 147
L+++D+ D G +Y+C+
Sbjct: 54 EDGVAILYVKDITKLDDG--TYRCK 76
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 28.0 bits (62), Expect = 0.97
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-----MTESTDGKYLVLPSG 128
V G + + W + +L + T ++ + +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 129 ELHIRDVGPED-GYKSYQCR 147
E+ I G +Y+C
Sbjct: 76 EMQIIKAKDNFAG--NYRCE 93
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 28.5 bits (64), Expect = 1.0
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 47 WADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVE 100
+ + G + S + ++ + L+ PS A V V+
Sbjct: 243 FVQSRRGGLALRG--VAGSLGTSGHMS------AAAFYLQSVDPSIRA--VLVQ 286
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 27.3 bits (61), Expect = 1.2
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 27/102 (26%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T+ + V G + ++ W + G EL K
Sbjct: 12 TLRMRSHRVPCGQNTRFILNVQSKPTAEV--------KWYHN-GVEL------QESSKIH 56
Query: 124 VLPSGE---LHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
+ L I D +D G +Y+ + GE AT
Sbjct: 57 YTNTSGVLTLEILDCHTDDSG--TYRAVCTNYK-GEASDYAT 95
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 27.9 bits (62), Expect = 1.2
Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 26/122 (21%)
Query: 50 TDGGQYQIDNQDFVVSQSYTVNIM---------DEHVLKGNSAVLKCHIPSFVADYVAVE 100
D G+Y+ Q +S + + + + L+CH + +
Sbjct: 64 DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWK---NTALHK 120
Query: 101 SWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLS 159
G+ + + +I +D G SY CR + +
Sbjct: 121 VTYLQNGKGR-----------KYFHHNSDFYIPKATLKDSG--SYFCRGLVGSKNVSSET 167
Query: 160 AT 161
Sbjct: 168 VQ 169
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 28.2 bits (62), Expect = 1.3
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 60 QDFVVSQSYTVNIMDE-HVLKGNSAVLKCHIPSFVADYVAVE-SWISDQG---------- 107
Q S V + D + G VL C + + + +W
Sbjct: 8 QQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYN 67
Query: 108 EELFVDMTESTDGKYLVLPSGE----LHIRDVGPEDGYKSYQCR 147
+ V + + L + + + ED Y C
Sbjct: 68 PSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDE-GVYICE 110
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 27.7 bits (61), Expect = 1.3
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 13/84 (15%)
Query: 73 MDEHVLKGNSAVLKCHI-----PS---FVADYVAVESWISDQGEELFVDMTESTDGKYLV 124
+ + G S L C P + + + Y
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV--HIHATYHQ 86
Query: 125 LPSGELHIRDVGPED-GYKSYQCR 147
+ + I + ED G +Y+CR
Sbjct: 87 HAASTISIDTLVEEDTG--TYECR 108
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 27.5 bits (61), Expect = 1.3
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 27/89 (30%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
T I+D V++G++A C + P W D + +
Sbjct: 45 TKTILDMEVVEGSAARFDCKVEGYPDPEV--------MWFKD-DNPV------KESRHFQ 89
Query: 124 VLPSGE----LHIRDVGPED-GYKSYQCR 147
+ E L I +V +D Y C+
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDA--KYTCK 116
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 27.9 bits (61), Expect = 1.4
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 32/128 (25%)
Query: 50 TDGGQY--QIDNQDFVVSQSYTVNI-------MDEHVLKGNSAVLKCHIPSFVADYVAVE 100
D G Y +I ++ + V + D V G++ ++C I S V
Sbjct: 94 ADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKV 153
Query: 101 SWISDQGEELFVDMTESTDGKYLVLPS--------------------GELHIRDVGPED- 139
+W+ G + S D G + ++ V D
Sbjct: 154 NWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQ 213
Query: 140 GYKSYQCR 147
G Y C
Sbjct: 214 GI--YTCS 219
Score = 27.1 bits (59), Expect = 2.6
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 19/88 (21%)
Query: 77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEE-------LFVDMTESTDGKY------- 122
V G S ++ C + +V W+ + ++ + G++
Sbjct: 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLV 76
Query: 123 --LVLPSGELHIRDVGPED-GYKSYQCR 147
G L ++DV D G Y C
Sbjct: 77 GDTFHNDGSLLLQDVQKADEG--IYTCE 102
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 28.0 bits (62), Expect = 1.4
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-G 128
V + V + +LKC + + + + W D E+ S D K+
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKE-THIV-WYKD-EREI------SVDEKHDFKDGIC 276
Query: 129 ELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
L I + +D G Y+ K G+ +
Sbjct: 277 TLLITEFSKKDAGI--YEVILKDDR-GKDKSRLK 307
Score = 26.5 bits (58), Expect = 4.3
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 101 SWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRLTGETR 157
++I + +E+ E K + + E+ + + ED Y + +
Sbjct: 141 NYIFN-EKEI----FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT-YTFQLQDGK-ATNH 193
Query: 158 LSAT 161
+
Sbjct: 194 STVV 197
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 27.9 bits (62), Expect = 1.4
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 21/81 (25%)
Query: 69 TVNIMDEHVLKGNSAVLKCHIPSF-VADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
TVN + VL G L C Y W +E+ +
Sbjct: 22 TVNPESKAVLAGQFVKLCCRATGHPFVQY----QWFKM-NKEIPNG------------NT 64
Query: 128 GELHIRDVGPED-GYKSYQCR 147
EL V +D G Y CR
Sbjct: 65 SELIFNAVHVKDAG--FYVCR 83
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 27.3 bits (61), Expect = 1.4
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 28/90 (31%)
Query: 69 TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVD-----MTEST 118
+ + + +G C + P W D G+++ +
Sbjct: 12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKI--------YWFKD-GKQISPKSDHYTIQRDL 62
Query: 119 DGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
DG LH +D G +Y
Sbjct: 63 DGTC------SLHTTASTLDDDG--NYTIM 84
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 28.0 bits (61), Expect = 1.5
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD 134
+ ++GNS + C+ P + + W QG S++G +G ++ +
Sbjct: 11 NSVEGNSVSITCYYPPTSVNRHTRKYWCR-QGARGGCITLISSEGYVSSKYAGRANLTN 68
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity,
transcription regulator; 1.95A {Enterobacteria phage
186} PDB: 2fkd_A
Length = 189
Score = 27.7 bits (61), Expect = 1.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 103 ISDQGEELFVDM-TESTDGKYLVLPSGELHIRDV 135
I +G+ FVD +DG +LV G + IR++
Sbjct: 118 IRSEGKIYFVDKQASLSDGLWLVDIKGAISIREL 151
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 27.4 bits (60), Expect = 1.8
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 12/125 (9%)
Query: 34 LPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPS 91
S V + + +++ GQ + + + + G L+C +
Sbjct: 53 ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEG 112
Query: 92 -FVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150
+ V + +EL + P+ V + + CRT+
Sbjct: 113 GAPRAQLTV-VLLRG-EKELKREPAVGE-------PAEVTTTVLVRRDHHGAQFSCRTEL 163
Query: 151 RLTGE 155
L +
Sbjct: 164 DLRPQ 168
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 27.7 bits (62), Expect = 1.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 108 EELFVDMTESTDGKYLVLPSGELHIRDVGPEDG 140
E Y+ G+ H+ GPED
Sbjct: 35 NESLSLWPVRCKSFYISTRFGQTHVIASGPEDA 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.2
Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 39/141 (27%)
Query: 34 LPSFV---SDHL-DVVSWADTD--GGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKC 87
LP S L + D + +D + T + D VL G+
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS------ 474
Query: 88 HIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR 147
I + D + V +T HI D GP G
Sbjct: 475 -ISERIVDCIIRLP----------VKWETTTQ-------FKATHILDFGP-GGASGLGVL 515
Query: 148 TKHRLTGETRLSATKG-RLVI 167
T G G R+++
Sbjct: 516 THRNKDG-------TGVRVIV 529
Score = 25.8 bits (56), Expect = 9.1
Identities = 22/150 (14%), Positives = 38/150 (25%), Gaps = 72/150 (48%)
Query: 8 VISQYYEAQVYD-----------VF--VIKGNA---AVFKCNLPSFVSDHLDVVSWADTD 51
+I Y A++ +F V +GNA A+F
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--------------------- 160
Query: 52 GGQ----------------YQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVAD 95
GGQ Y + D + E + + L
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKF-------SAETLSELIRTTLDA--EKVFTQ 211
Query: 96 YVAVESWISDQGEELFVDMTEST-DGKYLV 124
+ + W+ + +T D YL+
Sbjct: 212 GLNILEWLEN---------PSNTPDKDYLL 232
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 26.8 bits (59), Expect = 2.3
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 63 VVSQSYTVNIMDEHVLKGNSAVLKCHI-PSFVADYVAVESW---ISDQGEELFVD----- 113
VSQ + L+G+SA L C S + +W G+E+
Sbjct: 10 WVSQPPEI-----RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFR 64
Query: 114 --MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR 147
+ ++L ELHIRDV D Y CR
Sbjct: 65 GRLAPLASSRFLHDHQAELHIRDVRGHDA-SIYVCR 99
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 27.1 bits (60), Expect = 2.4
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 15/73 (20%)
Query: 79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDV 135
L + +V D + V +W + G + + +GE L I +
Sbjct: 16 TAEGIQLYSFVTYYVED-LKV-NWSHN-GSAI------RYSDRVKTGVTGEQIWLQINEP 66
Query: 136 GPED-GYKSYQCR 147
P D G Y
Sbjct: 67 TPNDKG--KYVME 77
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB:
3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A*
3mun_A*
Length = 693
Score = 27.1 bits (61), Expect = 3.1
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 105 DQGEELFVDMTESTDGKYLVLPSG------ELHIRDVGPEDG 140
+V T + D ++L++ + L+++D+ E+
Sbjct: 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 26.4 bits (57), Expect = 4.4
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 21/126 (16%)
Query: 50 TDGGQYQ--IDNQDFVVSQSYTVNIMD--------EHVLKGNSAVLKCHIPS-FVADYVA 98
+ G + + + L + C D A
Sbjct: 69 SAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNA 128
Query: 99 VESWISDQGEEL----------FVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT 148
+ + G+EL + E + ++ E + C+
Sbjct: 129 LSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA 188
Query: 149 KHRLTG 154
RL G
Sbjct: 189 TMRLPG 194
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 26.7 bits (59), Expect = 4.8
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES---TDGKYLVLPSGELHIRD 134
+ N L C + F +AVE W S+ E T +DG + + +L
Sbjct: 438 MTKNQVSLTCLVKGFYPSDIAVE-WESNGQPENNYKTTPPVLDSDGSFFL--YSKL---T 491
Query: 135 VGPED--GYKSYQCRTKH 150
V + C H
Sbjct: 492 VDKSRWQQGNVFSCSVMH 509
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 26.2 bits (57), Expect = 5.6
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 77 VLKGNSAVLKCHI--PSFVADYVAVESW------------ISDQGEELFVDMTESTDGKY 122
G+S L C++ P+ +V+ +W QG
Sbjct: 11 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 70
Query: 123 LVLPSGE--LHIRDVGPEDGYKSYQCRTKHRLTG 154
L + L + + ED SY C G
Sbjct: 71 LGAELRDASLRMFGLRVEDE-GSYTCLFVTFPQG 103
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 26.1 bits (58), Expect = 6.4
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 108 EELFVDMTESTDGKYLVLPSG-----ELHIRDVGPEDGYKSYQCRTKHR 151
M ++ D L + S E+H+ D+ + + + +
Sbjct: 270 PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 25.3 bits (55), Expect = 9.3
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 77 VLKGNSAVLKCHIPS------------------FVADYVAVESWISDQGEELFVDMTEST 118
V G++ ++C P + +V E + Q
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 119 DGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLS 159
D L L + L I DV +D Y+C + R++
Sbjct: 73 DQ--LSLGNAALQITDVKLQDA-GVYRCMISYGGADYKRIT 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,595,216
Number of extensions: 146212
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 232
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)