RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12724
         (167 letters)



>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 101

 Score = 32.7 bits (73), Expect = 0.006
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 69  TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG 128
                 EH+ +G +A+L C   S           I+D  ++  ++ +ES           
Sbjct: 6   KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS 65

Query: 129 ELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
           ELHI ++  E     Y+C       G  +   T
Sbjct: 66  ELHIENLNMEADPGQYRCNGTSSK-GSDQAIIT 97


>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
           (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 31.5 bits (70), Expect = 0.016
 Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 1/88 (1%)

Query: 75  EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD 134
             +  G    +KC +             +      +          +  +          
Sbjct: 11  GPLEAGKPITVKCSVADVYPFDRLEIDLL-KGDHLMKSQEFLEDADRKSLETKSLEVTFT 69

Query: 135 VGPEDGYKSYQCRTKHRLTGETRLSATK 162
              ED  K   CR K  +     +   +
Sbjct: 70  PVIEDIGKVLVCRAKLHIDEMDSVPTVR 97


>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 98

 Score = 30.8 bits (69), Expect = 0.023
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 80  GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST---DGKYLVLPSGELHIRDVG 136
           G+   L         D   V  W                    G + +L +G+L I+++ 
Sbjct: 10  GHGINLNIPNFQMTDDIDEVR-WERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 68

Query: 137 PEDGYKSYQCRTKHRLTGETRLSAT 161
            +D   +Y         G   L+  
Sbjct: 69  RDD-SGTYNVTVYST-NGTRILNKA 91


>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
           constant domain 2, CH2-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 101

 Score = 30.4 bits (68), Expect = 0.030
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 75  EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL-FVDMTESTDGKYLVLPSGELHIR 133
           E +L G+ A L C +           +W    G+            G Y V  S  L   
Sbjct: 13  EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSV--SSVLPG- 69

Query: 134 DVGPEDGYKSYQCRTKHR 151
              P +  K++ C   + 
Sbjct: 70  CAEPWNHGKTFTCTAAYP 87


>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 30.4 bits (67), Expect = 0.041
 Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 1/88 (1%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
            +H L G    +KC I S         SW  +  E                     L I 
Sbjct: 15  TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS 74

Query: 134 DVGPEDGYKSYQCRTKHRLTGETRLSAT 161
           ++   D    Y C   +   G       
Sbjct: 75  NIVRADFQTIYNCTAWNSF-GSDTEIIR 101


>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant
           domain 3, CH3-gamma {Guinea pig (Cavia porcellus)
           [TaxId: 10141]}
          Length = 111

 Score = 25.7 bits (56), Expect = 1.8
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 75  EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIR 133
            + L      L C I  F    + V  W S +  +         TDG + +     L + 
Sbjct: 22  RNELSKKKVSLTCMITGFYPADINV-EWDSSEPSDYKNTPPVFDTDGSFFL--YSRLKV- 77

Query: 134 DVGPEDGYKSYQCRTKH 150
           D    +  +S+ C   H
Sbjct: 78  DTDAWNNGESFTCSVMH 94


>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
           catalytic domain {Bacillus pasteurii [TaxId: 1474]}
          Length = 390

 Score = 24.3 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 67  SYTVNIMDEHV-LKGNSAVLKCHIPSFVA 94
            +TVN +DEH+ +      LK +IP  VA
Sbjct: 175 PFTVNTIDEHLDMLMVCHHLKQNIPEDVA 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,728
Number of extensions: 26435
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.7 bits)