BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12725
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 96/112 (85%), Gaps = 1/112 (0%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
FTC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAE 420
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKGMYQCVIRNEQE 58
TC G P+ +I W +D + +P + + VF I++V R D+ Y CV +N QE
Sbjct: 545 IVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN-QE 603
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
A G L++ P +I +F + G C G P I W LDG+ +
Sbjct: 604 GYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNE--------------PVFRIDSVRKEDKGMYQC 51
F C GNP ISW DGK + +++ I SV D G+Y+C
Sbjct: 448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ +++ A+ S +L + G P I++ + + G C +G P I W D
Sbjct: 508 IAKSKVGVAEHSAKLNVYGL---PYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 112 GKKL 115
+ L
Sbjct: 564 NRAL 567
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 7 FTCKYEGNPVKTISWMK--DGKPVPDHNEPVFRIDSVRK------------EDKGMYQCV 52
C +G PV W K +G + V D V++ ED G Y CV
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGT---TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 53 IRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ N L L + DPP +T++ G F C +GNP +SW
Sbjct: 325 VNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYTGNPIKTVSW 377
Query: 109 YLDGKKLVNAE 119
DGK + ++E
Sbjct: 378 MKDGKAIGHSE 388
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 19 ISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
I W DG+ + + V I++V G + C RN Q + L +
Sbjct: 652 IDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Query: 69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ PP +D+ G + +C A G P P+++W
Sbjct: 712 ---YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPDHNE------------PVFRIDSVRKEDKG-MYQCVIR 54
CK GNP+ I W++ DG V D P FR + R+E +Y C+ R
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 55 NE 56
N+
Sbjct: 121 NQ 122
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 94 FKCIASGNPTPEISW 108
+C ASGNP PEI W
Sbjct: 59 IECKASGNPMPEIIW 73
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
FTC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Query: 67 KLG 69
KLG
Sbjct: 386 KLG 388
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44 EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
ED G Y CV+ N L L + DPP +T++ G F C +
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 332
Query: 100 GNPTPEISWYLDGKKLVNAE 119
GNP +SW DGK + ++E
Sbjct: 333 GNPIKTVSWMKDGKAIGHSE 352
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPDHNE------------PVFRIDSVRKEDKG-MYQCVIR 54
CK GNP+ I W++ DG V D P FR + R+E +Y C+ R
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 85
Query: 55 NE 56
N+
Sbjct: 86 NQ 87
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 94 FKCIASGNPTPEISW 108
+C ASGNP PEI W
Sbjct: 24 IECKASGNPMPEIIW 38
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
FTC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 333 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Query: 67 KLG 69
KLG
Sbjct: 392 KLG 394
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44 EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
ED G Y CV+ N L L + DPP +T++ G F C +
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 338
Query: 100 GNPTPEISWYLDGKKLVNAE 119
GNP +SW DGK + ++E
Sbjct: 339 GNPIKTVSWMKDGKAIGHSE 358
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPDHNE------------PVFRIDSVRKEDKG-MYQCVIR 54
CK GNP+ I W++ DG V D P FR + R+E +Y C+ R
Sbjct: 32 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 91
Query: 55 NE 56
N+
Sbjct: 92 NQ 93
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 94 FKCIASGNPTPEISW 108
+C ASGNP PEI W
Sbjct: 30 IECKASGNPMPEIIW 44
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
FTC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Query: 67 KLG 69
KLG
Sbjct: 389 KLG 391
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44 EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
ED G Y CV+ N L L + DPP +T++ G F C +
Sbjct: 283 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 335
Query: 100 GNPTPEISWYLDGKKLVNAE 119
GNP +SW DGK + ++E
Sbjct: 336 GNPIKTVSWMKDGKAIGHSE 355
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPDHNE------------PVFRIDSVRKEDKG-MYQCVIR 54
CK GNP+ I W++ DG V D P FR + R+E +Y C+ R
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 85
Query: 55 NE 56
N+
Sbjct: 86 NQ 87
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 94 FKCIASGNPTPEISW 108
+C ASGNP PEI W
Sbjct: 24 IECKASGNPMPEIIW 38
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
P K F D L +Y C+A PTP WY
Sbjct: 218 PQDKHQFIDVEL--ASSYSLLCMAQSYPTPSFRWY 250
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPDHN--EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C GNPV I W K DG P EP +I SV ED+G Y+C N + G
Sbjct: 228 CFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGR 287
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
+ + + P + SD + G N + C A+G P P + W +G+ L +
Sbjct: 288 IIVQAQ---PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS 336
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNEPV-----FRIDSVRKEDKGMYQCVIRNEQESAQAS 63
C G P T+ W+++G+P+ N R + ED GMYQCV N+ + AS
Sbjct: 315 CAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYAS 374
Query: 64 GELKL 68
EL +
Sbjct: 375 AELAV 379
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 24 DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-----GELKLGG---RFDPP 75
DG+ I D G Y C+ + + + S +L L R P
Sbjct: 147 DGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAP 206
Query: 76 VIKESFSDETLN-PGPNYYFKCIASGNPTPEISW 108
IK F ET G +C A GNP P I W
Sbjct: 207 SIKARFPAETYALVGQQVTLECFAFGNPVPRIKW 240
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C G P T+ W+K+GK PDH +++ DSV DKG Y C++ NE
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 96
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + +L + R P+++ +++T+ G N F C +P P I W
Sbjct: 97 YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 150
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
FKC +SG P P + W +GK+
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEF 58
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C G P T+ W+K+GK PDH +++ DSV DKG Y C++ NE
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 95
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + +L + R P+++ +++T+ G N F C +P P I W
Sbjct: 96 YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
FKC +SG P P + W +GK+
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEF 57
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C G P T+ W+K+GK PDH +++ DSV DKG Y C++ NE
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 95
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + +L + R P+++ +++T+ G N F C +P P I W
Sbjct: 96 YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
FKC +SG P P + W +GK+
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEF 57
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 9 CKYEGNPVKTISWMK-DGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C GNPV I W K DG +EP+ I +V ED+G Y+C N + G
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
+ + + P + +D + G + + C+ASG P P + W DG+ L +
Sbjct: 289 IIIHAQ---PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
++C G P + W++DG+P+ N R + ED GMYQCV N+ +
Sbjct: 314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 62 ASGELKL 68
AS EL +
Sbjct: 374 ASAELTV 380
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI--------DSVRKEDKGMYQCVIRNEQ 57
TC+ NP T W +G + + +R+ + V+ +D G YQCV N +
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNAR 85
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 24 DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-----GELKLGG---RFDPP 75
DG+ I D G Y C + + S +L L R P
Sbjct: 148 DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207
Query: 76 VIKESFSDETLN-PGPNYYFKCIASGNPTPEISWY-LDGKK 114
IK F +T G +C A GNP P+I W LDG +
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
F C+ G P I+WMK GK V D V RI +R + D+ +Y+C N
Sbjct: 27 FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 86
Query: 56 EQESAQASGEL------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
S +L +L F P I + + G C A GNP PEISW+
Sbjct: 87 SLGEINTSAKLSVLEEDQLPSGF--PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWF 144
Query: 110 LD 111
D
Sbjct: 145 KD 146
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 9 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
C GNP ISW KD PV +I+S + D+G Y+CV N
Sbjct: 131 CAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATN 186
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PV + D+T G F C A+G P P I+W GKK+
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV 48
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV--PDHNEPV----FRIDSVRKEDKGMYQCVIRNEQESA 60
F C G PV T++WMK+G V D+ + V RI V K D+G YQCV NE +A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 61 QASGEL 66
Q+S +L
Sbjct: 392 QSSAQL 397
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 6 FFTCKYEGNPVKTISWMK---DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNE 56
C+ G+P+ TI W K D P+P + V +I ++ D G+Y+C RN
Sbjct: 140 LLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP 199
Query: 57 QESAQASGELKLGGRFDPPVIKESF-----SDETLNPGPNYYFKCIASGNPTPEISWYLD 111
S + E ++ DP + ++ + S+ G + +C SG P P +W L
Sbjct: 200 -ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW-LR 257
Query: 112 GKKLV 116
G++++
Sbjct: 258 GEEVI 262
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNEQE 58
C G P + +W++ + + ++ I +V +D G Y CV+ + E
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE 299
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+ AS EL + PP S+ + F+C SG P P ++W +G ++
Sbjct: 300 NISASAELTV---LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 19/126 (15%)
Query: 6 FFTCKYEGN-PVKTISWMKDG-----------KPVPDHNEPVFRIDSVR--KEDKGMYQC 51
C E + V I W KDG + +P+ + + I R K D+G+YQC
Sbjct: 40 LLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99
Query: 52 --VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
+ + + ++ + G ES T G KC G+P P I W
Sbjct: 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESI---TAFMGDTVLLKCEVIGDPMPTIHWQ 156
Query: 110 LDGKKL 115
+ + L
Sbjct: 157 KNQQDL 162
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 9 CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C GNPV TI W + DGKP+ + + I + ++ED G Y+CV N + A
Sbjct: 226 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 285
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
G+L + P + +D + + +++C A+G P P W +G L+
Sbjct: 286 KGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 336
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESA 60
F+ CK G P T W+K+G P+ + + I V D GMYQCV N+
Sbjct: 313 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 372
Query: 61 QASGELKL 68
+S EL +
Sbjct: 373 FSSAELSV 380
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASG--------ELKLGGRFDPPVIKESFSDETLNPG 89
I V K D G Y CV+ N + + G + G ++P + + G
Sbjct: 160 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 219
Query: 90 PNYYFKCIASGNPTPEISW-YLDGKKL 115
+C A GNP P I W DGK +
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPI 246
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV----------RKEDKGMYQCVIRN 55
+C+ +GNP I W +G V + FR V + +D G YQC+ N
Sbjct: 27 LSCEVKGNPKPHIRWKLNGTDVDIGMD--FRYSVVDGSLLINNPNKTQDAGTYQCIATN 83
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 94 FKCIASGNPTPEISWYLDG 112
C GNP P I W L+G
Sbjct: 27 LSCEVKGNPKPHIRWKLNG 45
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 9 CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C GNPV TI W + DGKP+ + + I + ++ED G Y+CV N + A
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
G+L + P + +D + + +++C A+G P P W +G L+
Sbjct: 287 KGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESA 60
F+ CK G P T W+K+G P+ + + I V D GMYQCV N+
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Query: 61 QASGELKL 68
+S EL +
Sbjct: 374 FSSAELSV 381
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASG--------ELKLGGRFDPPVIKESFSDETLNPG 89
I V K D G Y CV+ N + + G + G ++P + + G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 90 PNYYFKCIASGNPTPEISW-YLDGKKL 115
+C A GNP P I W DGK +
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPI 247
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV----------RKEDKGMYQCVIRN 55
+C+ +GNP I W +G V + FR V + +D G YQC+ N
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMD--FRYSVVDGSLLINNPNKTQDAGTYQCIATN 84
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 94 FKCIASGNPTPEISWYLDG 112
C GNP P I W L+G
Sbjct: 28 LSCEVKGNPKPHIRWKLNG 46
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
C G P I+W K G +P ++ RI +V +ED G Y C+ N+ S
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
+ + +++ P + + L PG + C A+GNP P + W ++G+ L +A
Sbjct: 301 IRHTISVRVKAA---PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
S + + G + +CIASG PTP+I+WY G L
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
P + K+S D ++P N +C A GNP P W + +
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSR 56
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPV-------------FRIDSVRKEDKGMYQCV 52
C+ +GNP + W ++ + +P FR +E +G YQC
Sbjct: 36 LIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCF 95
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISW 108
RN+ +A S ++L P KE+ + G +C G P+P I W
Sbjct: 96 ARNKFGTA-LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
F C+ G P I+WMK GK V D V RI +R + D+ +Y+C N
Sbjct: 26 FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 85
Query: 56 EQESAQASGELKL--GGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
S +L + + P P I + + C A GNP PEISW+ D
Sbjct: 86 SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKD 145
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 9 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
C GNP ISW KD PV +I+S + D+G Y+CV N
Sbjct: 130 CAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATN 185
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PV + D+T G F C A+G P P I+W GKK+
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV 47
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQCVIRN 55
F G PV +SW +DG+ + P +I +V K + G Y N
Sbjct: 25 FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
A ++ EL + PP + T+ G + +G PTP + +Y DG ++
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGKKL 115
G F+ SG P PE+SW+ DG+ +
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVI 46
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQCVIRN 55
F G PV +SW +DG+ + P +I +V K + G Y N
Sbjct: 25 FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
A ++ EL + PP + T+ G + +G PTP + +Y DG ++
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGKKL 115
G F+ SG P PE+SW+ DG+ +
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVI 46
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK-EDKGMYQCVIRN 55
F C+ G+P I W K GK V D + V RI +R D+ +Y+CV N
Sbjct: 26 FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDE---TLNPGPNY---------YFKCIASGNPT 103
GE+ + R V++E T++ GP C ASGNP
Sbjct: 86 N------VGEISVSTRLT--VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
PEI+W+ D
Sbjct: 138 PEITWFKD 145
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
PP + D+T G F C A+G+P P+I W GKK+ N
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN 49
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNE------------PVFRIDSVRKEDKGMYQCVIRN 55
C GNP I+W KD PV N +I+ + D+G Y+CV N
Sbjct: 130 CAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATN 188
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C+ G+ +SW KDG+ + D HN +I + G Y C N
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+A +S +L L PP L G + FKC +G +I+W D +++
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
CK +G P I+W K+ + +N I+ V D G Y C N
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ +S L + R PP D G F+C +G+ ++SWY DG+ L
Sbjct: 85 GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELL 142
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQ 57
+ CK G+P + W KD + + ++ V + ++ ED G Y C N
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 58 ESAQASGELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
SA +S LK+ +PPV K+ ETL G + + +C G P ++SW+ D ++L
Sbjct: 371 GSASSSTSLKVK---EPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKREL 425
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C G I+W KD + + N + V K D G Y C N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV- 275
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ + S +LG + P IK+ + + ++C G+P ++ WY D
Sbjct: 276 -AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
G +PP E G +C G P I+WY + KL +A
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSA 49
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 1 MLALKF--FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
+LA +F C+ G+P W K K +P+ N ++V +D G Y C + N
Sbjct: 30 VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNN-- 87
Query: 59 SAQASGELKLGGRFDPPVIKESF------------------SDETLNPGPNYYFKCIASG 100
+ E + D I ESF + + L PG +C+A G
Sbjct: 88 ---FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG 144
Query: 101 NPTPEISWY 109
+P P W+
Sbjct: 145 SPIPHYQWF 153
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C G+P+ W K+ P+ + ++ + V E +G Y C + N+++S +
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C GNP +ISW+K+G+ H + ++SV D+G Y CV+ N+
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + + L + R P+++ +++T G + F C + P I W
Sbjct: 203 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A+GNPTP ISW +G++
Sbjct: 143 FRCPAAGNPTPSISWLKNGREF 164
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRK-EDKGMYQ 50
+ F C G+P +I W K+GK V + RI+ VR D Y+
Sbjct: 24 GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 83
Query: 51 CVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
CV N + SA A+ + G + PVI + + G C A GNPTP
Sbjct: 84 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 143
Query: 106 ISWYLDGKKL 115
I W + K+
Sbjct: 144 IYWIKNQTKV 153
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRN 55
TCK GNP I W+K+ V D + P + +I++ R+ED+G Y+CV N
Sbjct: 131 LMTCKAIGNPTPNIYWIKNQTKV-DMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 186
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G PP I ++ + G F C A G+P P I W +GKK+ +
Sbjct: 3 GSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ 53
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRK-EDKGMYQ 50
+ F C G+P +I W K+GK V + RI+ VR D Y+
Sbjct: 22 GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 51 CVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
CV N + SA A+ + G + PVI + + G C A GNPTP
Sbjct: 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 141
Query: 106 ISWYLDGKKL 115
I W + K+
Sbjct: 142 IYWIKNQTKV 151
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRN 55
TCK GNP I W+K+ V D + P + +I++ R+ED+G Y+CV N
Sbjct: 129 LMTCKAIGNPTPNIYWIKNQTKV-DMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP I ++ + G F C A G+P P I W +GKK+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV 47
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C GNP +ISW+K+G+ H + ++SV D+G Y CV+ N+
Sbjct: 35 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + + L + R P+++ +++T G + F C + P I W
Sbjct: 95 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A+GNPTP ISW +G++
Sbjct: 35 FRCPAAGNPTPSISWLKNGREF 56
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 35/130 (26%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR---------------KEDKGMYQCV 52
C+ +P +SW+ HNE V I R K D+G+Y+C
Sbjct: 119 VCRVSSSPAPAVSWLY-------HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 53 IRNEQESAQASGELKLGGRFD----PPVI---KESFSDETLNPGPNYYFKCIASGNPTPE 105
R E A GE+ PP I ++SF + T G F C ASG+P P
Sbjct: 172 GRVE-----ARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMTFSCRASGSPEPA 225
Query: 106 ISWYLDGKKL 115
ISW+ +GK +
Sbjct: 226 ISWFRNGKLI 235
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 5 KFFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIR 54
KFFTC G P ++I W G+ + V + + VR ED G+Y+C
Sbjct: 22 KFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80
Query: 55 NEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ + ++ +A+ L++ + +E S + G + C S +P P +SW +
Sbjct: 81 DAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 114 KLVN 117
++
Sbjct: 138 EVTT 141
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCVIRN 55
F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y C N
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 269
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAE 119
S S L+ G + +F C A G P I WY G+K+++ +
Sbjct: 10 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQ 49
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 35/130 (26%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR---------------KEDKGMYQCV 52
C+ +P +SW+ HNE V I R K D+G+Y+C
Sbjct: 23 VCRVSSSPAPAVSWLY-------HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Query: 53 IRNEQESAQASGELKLGGRFD----PPVI---KESFSDETLNPGPNYYFKCIASGNPTPE 105
R E A GE+ PP I ++SF + T G F C ASG+P P
Sbjct: 76 GRVE-----ARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMTFSCRASGSPEPA 129
Query: 106 ISWYLDGKKL 115
ISW+ +GK +
Sbjct: 130 ISWFRNGKLI 139
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCVIRN 55
F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y C N
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRIDSVRKE--DKGMYQ 50
CK EG P TI W K G+ V D ++P RI RK D+G+Y
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 51 CVIRN---EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEI 106
CV RN E S AS E+ + R D +++ SD + G +C G+P P I
Sbjct: 89 CVARNYLGEAVSHDASLEVAI-LRDD---FRQNPSDVMVAVGEPAVMECQPPRGHPEPTI 144
Query: 107 SWYLDGKKL 115
SW DG L
Sbjct: 145 SWKKDGSPL 153
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 13 GNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRN---EQESAQA 62
G+P TISW KDG P+ D +E + I RK D G Y CV N E+ES A
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVA 196
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R+ P+++ ++ + G + F C + P I W
Sbjct: 91 YGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEF 52
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
F C+ G+P ++W K GK V V RI +R D+ +Y+CV +N
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56 EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
+ GE+ + + V++E F + + P + C ASGNP
Sbjct: 86 ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
PEI+W+ D
Sbjct: 138 PEITWFKD 145
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 9 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
C GNP I+W KD PV +I+S + D+G Y+CV N
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+PP + D+ G F C A+G+P P ++W GKK+
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
F C+ G+P ++W K GK V V RI +R D+ +Y+CV +N
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56 EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
+ GE+ + + V++E F + + P + C ASGNP
Sbjct: 86 ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
PEI+W+ D
Sbjct: 138 PEITWFKD 145
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 32/128 (25%)
Query: 9 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
C GNP I+W KD PV +I+S + D+G Y+CV N
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA-- 187
Query: 60 AQASGELKLGGRFDPPV--------IKESFS----DETLNPGPNYYFKCIASGNPTPEIS 107
G R+ P + FS + PG N C+A G+P P +
Sbjct: 188 ---------GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Query: 108 WYLDGKKL 115
W + L
Sbjct: 239 WMQGAEDL 246
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+PP + D+ G F C A+G+P P ++W GKK+
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
+C+ G P+ I W + GK + D + + +ED+G+Y C+ NE
Sbjct: 27 LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEV 86
Query: 58 ESAQASGELKLGG--RFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
+ S +L L +F P +KE + G + G P P ++W+ K
Sbjct: 87 GEVETSSKLLLQATPQFHPGYPLKEKYYGAV---GSTLRLHVMYIGRPVPAMTWFHGQKL 143
Query: 115 LVNAE 119
L N+E
Sbjct: 144 LQNSE 148
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
+ P I++ D T G C G P P+I WY GK+L+ +
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS 51
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
F C+ G+P ++W K GK V V RI +R D+ +Y+CV +N
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56 EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
+ GE+ + + V++E F + + P + C ASGNP
Sbjct: 86 ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
PEI+W+ D
Sbjct: 138 PEITWFKD 145
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 9 CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
C GNP I+W KD PV +I+S + D+G Y+CV N
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+PP + D+ G F C A+G+P P ++W GKK+
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 39/132 (29%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
F C+ G+P ++W K GK V V RI +R D+ +Y+CV +N
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQN 85
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPG-PNY---------------YFKCIAS 99
GE+ + + V++E + L PG PN C AS
Sbjct: 86 PH------GEVTVHAKLT--VLRE----DQLPPGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 100 GNPTPEISWYLD 111
GNP PEI+W+ D
Sbjct: 134 GNPDPEITWFKD 145
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PPV + D+ G F C A+G+P P ++W GKK+
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 9 CKYEGNPVKTISWMKDGKPV--PDHNEPV-------FRIDSVRKEDKGMYQCVIRN 55
C GNP I+W KD PV N + +I+S + D+G Y+CV N
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASN 185
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCVIRNEQES 59
F+C+ G+P ISW ++GK + ++ + + + + ++ D G Y C N+
Sbjct: 24 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 83
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ L++ P +I+ +ET C A G P PEI+W
Sbjct: 84 DEKQAFLQV--FVQPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITW 128
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 85 TLNPGPNYYFKCIASGNPTPEISWYLDGK 113
T G F C ASG+P P ISW+ +GK
Sbjct: 15 TAERGEEMTFSCRASGSPEPAISWFRNGK 43
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 88
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 89 YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 142
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEF 50
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 89
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 90 YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 143
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEF 51
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 91 YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEF 52
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 91 YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEF 52
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 99 YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEF 60
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 99 YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEF 60
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
CK EG P TI W KDG+PV + + R+ +++D G Y CV
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88
Query: 54 RNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYFKC-IASGNPTPEIS 107
+N ++ L++ V+++ F D + G +C G P P +
Sbjct: 89 KNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 108 WYLDGKKL 115
W DG L
Sbjct: 143 WIKDGVPL 150
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
L G++ P I E +D + C G P P I W+ DG+ + E
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 12 EGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQCVIRN 55
+G P T+ W+KDG P+ D F I +V D+G Y+C+ +N
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
CK EG P TI W KDG+PV + + R+ +++D G Y CV
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88
Query: 54 RNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYFKC-IASGNPTPEIS 107
+N ++ L++ V+++ F D + G +C G P P +
Sbjct: 89 KNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 108 WYLDGKKL 115
W DG L
Sbjct: 143 WIKDGVPL 150
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
L G++ P I E +D + C G P P I W+ DG+ + E
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 12 EGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQCVIRN 55
+G P T+ W+KDG P+ D F I +V D+G Y+C+ +N
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP T W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENE 90
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 91 YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P W +GK+
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEF 52
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP T W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENE 97
Query: 57 QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
S + L + R P+++ ++ + G + F C + P I W
Sbjct: 98 YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 151
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P W +GK+
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEF 59
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQ 57
+ CK G+P + W KD + + ++ V + ++ ED G Y C N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 58 ESAQASGELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
SA +S LK+ +PPV K+ ETL G + + +C G P ++SW+ D ++L
Sbjct: 179 GSASSSTSLKVK---EPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKREL 233
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C G I+W KD + + N + V K D G Y C N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV- 83
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ + S +LG + P IK+ + + ++C G+P ++ WY D
Sbjct: 84 -AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQ 57
+ CK G+P + W KD + + ++ V + ++ ED G Y C N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 58 ESAQASGELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
SA +S LK+ +PPV K+ ETL G + + +C G P ++SW+ D ++L
Sbjct: 179 GSASSSTSLKVK---EPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKREL 233
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C G I+W KD + + N + V K D G Y C N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV- 83
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ + S +LG + P IK+ + + ++C G+P ++ WY D
Sbjct: 84 -AGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGELKLGGRFDPPVIKESFSDETLNPGPNY 92
+ + + +D+G Y C+ ++ + + +L + R P I + ++T + G +
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV-APTITGNLENQTTSIGESI 684
Query: 93 YFKCIASGNPTPEISWYLDGKKLV 116
C ASGNP P+I W+ D + LV
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLV 708
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQC 51
+C GNP I W KD + + + + V + I VRKED+G+Y C
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 737
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 10 KYEGNPVKTISWMKDGKPVPDHNE----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
KY G P I W K+G P+ ++ V I V + D G Y ++ N + S
Sbjct: 353 KYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412
Query: 66 LKLGGRFDPPVIKESFSD--ETLNPGPNYYFKCIASGNPTP-EISWY 109
+ L P + ++S ++ G C P P I WY
Sbjct: 413 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 36 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK-----ESFSDETLNPGP 90
ID V + D+G+Y C + + + S +++ + P + ES + T+ G
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFVAFGSGMESLVEATV--GE 346
Query: 91 NYYFKCIASGNPTPEISWYLDGKKL 115
G P PEI WY +G L
Sbjct: 347 RVRIPAKYLGYPPPEIKWYKNGIPL 371
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCI 97
SV + D G Y+C I+NE S S + L + P P I S++ PG N C
Sbjct: 348 SVTRNDVGPYECGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYT--YYRPGVNLSLSCH 404
Query: 98 ASGNPTPEISWYLDG 112
A+ NP + SW +DG
Sbjct: 405 AASNPPAQYSWLIDG 419
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
FTC+ E + W+ +G+ +P + + +V + D Y C I+N S
Sbjct: 487 FTCEPEAQNTTYLWWV-NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSV-S 544
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
A S + L + P S D + G N C ++ NP+P+ SW ++G
Sbjct: 545 ANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING 597
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 7 FTCKYEGNPVKTISWMKDGK-PVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
FTC+ E + W+ + PV + + +V + D Y+C +N SA
Sbjct: 131 FTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV-SA 189
Query: 61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
+ S + L + P S + + G N C A+ NP + SW+++G
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 5 KFFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIR 54
KFFTC G P ++I W G+ + V + + VR ED G+Y+C
Sbjct: 20 KFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 55 NEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ + ++ +A+ L++ + +E S + G + C S +P P +SW
Sbjct: 79 DAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAE 119
S S L+ G + +F C A G P I WY G+K+++ +
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQ 47
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
F+C +G PV T++W++ G+ + H + F I SV+ D+G Y V+ N +
Sbjct: 34 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Query: 58 ESAQASGELKL 68
+A L +
Sbjct: 94 GKQEAEFTLTI 104
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
T+ G + F C G P P ++W G+ L
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVL 55
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 7 FTCKYEGNPVKTISWMK--------DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
F C E P ISW + D + N + I SV D G+Y C N
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 59 SA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
A ++ G L++ + P + + + + + G C GNP P +SW
Sbjct: 87 GAVESCGALQV--KMKPKITRPPINVKIIE-GLKAVLPCTTMGNPKPSVSW 134
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQESA 60
C GNP ++SW+K + +++ RI +V+KED G Y+CV +N +A
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 18 TISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69
TI W G+ V + F +I ++K D+G Y+C R ++++
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Query: 70 GRFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P V ++S + T N G + C A G P P +SW DG+ + N E
Sbjct: 191 VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----VFRIDS-------VRKEDKGMYQCVIRN 55
C +G P T+SW KDG+P+ + E +F DS V K D+ Y C+ N
Sbjct: 216 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275
Query: 56 EQESAQASGELKL 68
+ AS LK+
Sbjct: 276 KAGEQDASIHLKV 288
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 5 KFFTCKYEGNPV-KTISWMK-DGKPVP-----------DHNEPVFRIDSVRKEDKGMYQC 51
KFF C+ G+ K ISW +G+ + D + I + +D G+Y+C
Sbjct: 20 KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79
Query: 52 VIRNEQES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
V+ E + ++A+ +K+ F + K + + + G + C + P I W
Sbjct: 80 VVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 111 DGKKLV 116
G+ ++
Sbjct: 137 KGRDVI 142
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
F+C +G PV T++W++ G+ + H + F I SV+ D+G Y V+ N +
Sbjct: 28 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 87
Query: 58 ESAQASGELKL 68
+A L +
Sbjct: 88 GKQEAEFTLTI 98
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
T+ G + F C G P P ++W G+ L
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVL 49
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 52
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQC 51
+C GNP I W KD + + + + V + I VRKED+G+Y C
Sbjct: 30 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCVIRNEQE 58
CK G+P+ ISW+K+G P + + +I ++R D G Y CV
Sbjct: 27 LLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCV------ 80
Query: 59 SAQASGELKLGGRFD 73
+ +SGE D
Sbjct: 81 ATSSSGETSWSAVLD 95
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
G PP+I + +++TL KC A+G+P P ISW +G
Sbjct: 4 GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG 46
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 31 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 74
N + RID +++ED G YQC I N S + S +KL FDP
Sbjct: 160 QNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 31 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 74
N + RID +++ED G YQC I N S + S +KL FDP
Sbjct: 160 QNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLDIIFDP 202
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 91
Query: 57 QESAQASGELKL 68
S + L +
Sbjct: 92 YGSINHTYHLDV 103
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEF 53
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87
Query: 57 QESAQASGELKL 68
S + L +
Sbjct: 88 YGSINHTYHLDV 99
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEF 49
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK +H +++ +SV DKG Y CV+ NE
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 92
Query: 57 QESAQASGELKL 68
S + L +
Sbjct: 93 YGSINHTYHLDV 104
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F+C A GNP P + W +GK+
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEF 54
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
G PPVI++ ++T+ + C+A+G+P P I W DG
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG 46
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNE-------PVFRIDSVRKEDKGMYQCVIRNEQE 58
+C G+PV TI W KDG V + V +I + D G Y C+
Sbjct: 27 VLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNP 88
A S +++ F PV +D L P
Sbjct: 87 EATWSAYIEV-QEFGVPVQPPRPTDPNLIP 115
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 9 CKYEGNPVKTISWMKDGKPV-PDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQE 58
CK G P +SW DGKPV PD + I+ V D G+Y C+ N
Sbjct: 31 CKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
Query: 59 SAQASGELKLGGRFDPP 75
S EL + + P
Sbjct: 91 QNSFSLELVVAAKESGP 107
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
P ++ D T+ G C SG PTP++SW LDGK
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGK 48
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F K G P T W KDGK + D I D G+Y C ++N
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSA 85
Query: 58 ESAQASGELKL 68
S +S +L +
Sbjct: 86 GSVSSSCKLTI 96
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
PVI D T++ F A+G P P W DGK +
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG 50
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
R PP I+ SD +++ G C +G PTPE++W G+K+ + E
Sbjct: 4 RGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE 52
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----------VRKEDKGMYQCVIRNEQ 57
C + G P ++W G+ + + F I++ V+K+D G+Y + NE
Sbjct: 29 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 88
Query: 58 ESAQASGELKL 68
S A+ + +
Sbjct: 89 GSDSATVNIHI 99
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRIDSVRKE--DKGMYQ 50
CK EG P TI W K G+ V D ++P RI RK D+G+Y
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 51 CVIRN---EQESAQASGEL 66
CV RN E S AS E+
Sbjct: 89 CVARNYLGEAVSHDASLEV 107
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP I+ SD +++ G C +G PTPE++W G+K+ + E
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE 50
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----------VRKEDKGMYQCVIRNEQ 57
C + G P ++W G+ + + F I++ V+K+D G+Y + NE
Sbjct: 27 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
Query: 58 ESAQASGELKL 68
S A+ + +
Sbjct: 87 GSDSATVNIHI 97
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIRN 55
C GNPV I W K +P+P E V +I +++ ED+G+Y+C N
Sbjct: 135 CFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAEN 186
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASGE----LKLGGRFDPPV---IKESFSDETLNPGP 90
I +V DKG Y C + + + + + + R P I F D G
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 91 NYYFKCIASGNPTPEISW 108
N +C A GNP P+I W
Sbjct: 130 NVTLECFALGNPVPDIRW 147
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 36 FRIDSVRKEDKGMYQCVI-RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
RI S++ D G YQC++ Q G + L G P E D T+ +
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL---PYFLEEPEDRTVAANTPFNL 126
Query: 95 KCIASGNPTP-EISWYLDGKKLVNA 118
C A G P P ++ W D L A
Sbjct: 127 SCQAQGPPEPVDLLWLQDAVPLATA 151
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR---------IDSVRKEDKGMYQCVIRNE 56
C +G P T++W KDG+P+ + NE + I V K D+ Y C+ N+
Sbjct: 33 LACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENK 92
Query: 57 QESAQASGELKL 68
A+ LK+
Sbjct: 93 AGEQDATIHLKV 104
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 74 PPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
PP ++ +S + T N + C A G P P ++W DG+
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGE 52
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSV--------RKEDKGMYQCVIRN 55
FTC+ GNP I W KDGK P DH +D +D G Y + N
Sbjct: 27 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 86
Query: 56 EQESAQASGELKL 68
Q +G L +
Sbjct: 87 PQGRVSCTGRLMV 99
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F C +GNP P+I W+ DGK++
Sbjct: 27 FTCRVAGNPKPKIYWFKDGKQI 48
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSV--------RKEDKGMYQCVIRN 55
FTC+ GNP I W KDGK P DH +D +D G Y + N
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87
Query: 56 EQESAQASGELKL 68
Q +G L +
Sbjct: 88 PQGRISCTGRLMV 100
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 94 FKCIASGNPTPEISWYLDGKKL 115
F C +GNP P+I W+ DGK++
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQI 49
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ P I E +T+ G + +F+ G P PE WY +G K+
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI 46
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
TC+ P I WMKDG P+P PV + + +D+G Y CV + Q S
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQES 86
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 38 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 65 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAG-VPNKVGT 122
Query: 96 CIASGN-PTPEISWYLDGKKLVNAE 119
C++ G+ P +SW+LDGK LV E
Sbjct: 123 CVSEGSYPAGTLSWHLDGKPLVPNE 147
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 KFFTCKYEGN-PVKTISWMKDGKP-VPDHNEPVFRIDSVRKEDKGMY 49
K TC EG+ P T+SW DGKP VP+ + + R + G++
Sbjct: 119 KVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLF 165
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRN 55
C G PV I+W+ +G+P+ + I ED G Y C+ N
Sbjct: 30 VLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN 85
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P D + G ++ +C G P P I+W L+G+ +
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 38 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 68 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAG-VPNKVGT 125
Query: 96 CIASGN-PTPEISWYLDGKKLVNAE 119
C++ G+ P +SW+LDGK LV E
Sbjct: 126 CVSEGSYPAGTLSWHLDGKPLVPNE 150
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 KFFTCKYEGN-PVKTISWMKDGKP-VPDHNEPVFRIDSVRKEDKGMY 49
K TC EG+ P T+SW DGKP VP+ + + R + G++
Sbjct: 122 KVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLF 168
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
TC+ P I WMKDG P+P PV + + +D+G Y CV + Q S
Sbjct: 23 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQES 79
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 38 IDSVRKEDKGMYQC--VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
+ +V +D+G+++C + RN +E+ +++ +++ P I +S S+ T PN
Sbjct: 436 LPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASELTAGV-PNKVGT 493
Query: 96 CIASGN-PTPEISWYLDGKKLV 116
C++ G+ P +SW+LDGK LV
Sbjct: 494 CVSEGSYPAGTLSWHLDGKPLV 515
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 KFFTCKYEGN-PVKTISWMKDGKP-VPDHNEPVFRIDSVRKEDKGMY 49
K TC EG+ P T+SW DGKP VP+ + + R + G++
Sbjct: 490 KVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLF 536
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPV-PDHNEPV---------FRIDSVRKEDKGMYQCVIRN 55
+ + +G P +SW+++ +PV PD RI + + D G Y C N
Sbjct: 24 IMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83
Query: 56 EQESAQASGELKLGG 70
E + Q L++ G
Sbjct: 84 EYGARQCEARLEVRG 98
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
PP K S D+++ G + G P P +SW
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSW 39
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 5 KFFTCKYEGNPV-KTISWMK-DGKPVP-----------DHNEPVFRIDSVRKEDKGMYQC 51
KFF C+ G+ K ISW +G+ + D + I + +D G+Y+C
Sbjct: 20 KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79
Query: 52 VIRNEQES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
V+ E + ++A+ +K+ F + K + + + G + C + P I W
Sbjct: 80 VVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH 136
Query: 111 DGKKLV 116
G+ ++
Sbjct: 137 KGRDVI 142
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESA---QASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
I ++R D+G Y+CV+ ++ A + E+ L + D P S SD +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--PSISDFEIPTSNIRRI 126
Query: 95 KCIASGN-PTPEISWYLDGKKL 115
C SG P P +SW +G++L
Sbjct: 127 ICSTSGGFPEPHLSWLENGEEL 148
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESA---QASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
I ++R D+G Y+CV+ ++ A + E+ L + D P S SD +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--PSISDFEIPTSNIRRI 126
Query: 95 KCIASGN-PTPEISWYLDGKKL 115
C SG P P +SW +G++L
Sbjct: 127 ICSTSGGFPEPHLSWLENGEEL 148
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 16/125 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID------------SVRKEDKGMYQCVIR 54
CK G+P + W + GK + +RI SV +D +YQ
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLK-YRIQEFKGGYHQLIIASVTDDDATVYQVRAT 80
Query: 55 NE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
N+ S AS E+++ + P E G K SG P P I+W G
Sbjct: 81 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ-KG 139
Query: 113 KKLVN 117
+ L++
Sbjct: 140 QDLID 144
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
P KE + + N C +G+P P + WY GK+++
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 44
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 16/125 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID------------SVRKEDKGMYQCVIR 54
CK G+P + W + GK + +RI SV +D +YQ
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLK-YRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
Query: 55 NE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
N+ S AS E+++ + P E G K SG P P I+W G
Sbjct: 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ-KG 141
Query: 113 KKLVN 117
+ L++
Sbjct: 142 QDLID 146
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
P KE + + N C +G+P P + WY GK+++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C G+P+ W K+ P+ + ++ + V E +G Y C + N+++S +
Sbjct: 22 VLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 82 SDETLNPGPNYYFKCIASGNPTPEISWY 109
+ + L PG +C+A G+P P W+
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWF 38
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 10 KYEGNPVKTISWMKDGKPVPDHNE----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
KY G P I W K+G P+ ++ V I V + D G Y ++ N + S
Sbjct: 223 KYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 282
Query: 66 LKLGGRFDPPVIKESFSD--ETLNPGPNYYFKCIASGNPTP-EISWY 109
+ L P + ++S ++ G C P P I WY
Sbjct: 283 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 329
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 36 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK-----ESFSDETLNPGP 90
ID V + D+G+Y C + + + S +++ + P + ES + T+ G
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFVAFGSGMESLVEATV--GE 216
Query: 91 NYYFKCIASGNPTPEISWYLDGKKL 115
G P PEI WY +G L
Sbjct: 217 RVRIPAKYLGYPPPEIKWYKNGIPL 241
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 36 FRIDSVRKEDKGMYQCVIR-NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
+RI+ R ED G Y CV A A+ E+K P I E N G +
Sbjct: 58 YRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA-----PDITGHKRSENKNEGQDAMM 112
Query: 95 KCIASGNPTPEISW 108
C + G P PE W
Sbjct: 113 YCKSVGYPHPEWMW 126
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With
Interleukin-1 Beta
Length = 315
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 18 TISWMKDGKPVPDHNEPVFRIDS---------VRKEDKGMYQCVIRNEQESAQASGELKL 68
TI+W KD P E RI + ED G Y CV+RN + +K+
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 92
Query: 69 GGRF 72
+F
Sbjct: 93 SAKF 96
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 18 TISWMKDGKPVPDHNEPVFRIDS---------VRKEDKGMYQCVIRNEQESAQASGELKL 68
TI+W KD P E RI + ED G Y CV+RN + +K+
Sbjct: 34 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 89
Query: 69 GGRF 72
+F
Sbjct: 90 SAKF 93
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCI- 97
SV ++D G Y C++ +E Q GE+ + P K + S ++ G C
Sbjct: 71 SVTRKDNGEYTCMV--SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE 128
Query: 98 ASGNPTPEISWYLDGKKLVNAE 119
G+P E SW+ DG ++ A+
Sbjct: 129 HDGSPPSEYSWFKDGISMLTAD 150
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----DHNEPVFR-------IDSVRKEDKGMYQCVIRN 55
CK G+P + W + GK + + F+ I SV +D +YQ N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 56 E--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ S AS E+++ + P E G K SG P P I+W G+
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ-KGQ 142
Query: 114 KLVN 117
L++
Sbjct: 143 DLID 146
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
P KE + + N C +G+P P + WY GK+++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human
Il-1beta And Il-1ra, Bound To Human Interleukin-1
Receptor Type 1
Length = 319
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 18 TISWMKDGKPVPDHNEPVFRIDS---------VRKEDKGMYQCVIRNEQESAQASGELKL 68
TI+W KD P E RI + ED G Y CV+RN + +K+
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 92
Query: 69 GGRF 72
+F
Sbjct: 93 SAKF 96
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 18 TISWMKDGKPVPDHNEPVFRIDS---------VRKEDKGMYQCVIRNEQESAQASGELKL 68
TI+W KD P E RI + ED G Y CV+RN + +K+
Sbjct: 39 TITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLR----IKI 94
Query: 69 GGRF 72
+F
Sbjct: 95 SAKF 98
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE---PV--------FRIDSVRKEDKGMYQCVIRN 55
C EG I W+KDG V + ++ PV + SV + D G Y C + +
Sbjct: 22 LNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKK 114
E+ + S + L P E D + P + C A G P P I W+ K
Sbjct: 82 GGET-EISQPVWLTVEGVPFFTVEP-KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK 139
Query: 115 L 115
+
Sbjct: 140 I 140
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 56
TC G+P +SW+K+ K + DH F I+ V D G Y V++N+
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
T+ G C G+P PE+SW + K L +
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD 162
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 21 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 65
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 27 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 71
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQCVIRNE 56
F CK EG P + W KD PV D++E I V +D Y C N
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 57 QESAQASGEL 66
A + EL
Sbjct: 121 LGEATCTAEL 130
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
P ++ D + G F C G P PE+ W+ D
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQCVIRNE 56
F CK EG P + W KD PV D++E I V +D Y C N
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 57 QESAQASGEL 66
A + EL
Sbjct: 121 LGEATCTAEL 130
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
P ++ D + G F C G P PE+ W+ D
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD 78
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
TC+ +P +I W +G +P H +P +R + D G Y C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-NNNDSGEYTC 68
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQC 51
TC E K I+W KDGK + ++ + + S K+ +GMYQC
Sbjct: 22 LLTCDAE---AKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQC 66
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHNEPV----FRIDSVRKEDKGMYQCVIRNEQ 57
CK G P + W + KP+ V I V+ DKG Y C NE
Sbjct: 331 CKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEH 383
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 4 LKFFTCKYEGNPVKTISWMKDGKPV--------PDHNEPV---FRIDSVRKEDKGMYQCV 52
+ C Y NP+ ++ K+GK V HN + ED+G+Y C
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
+ N Q LKL P ++ + G + C +G P P + W +
Sbjct: 289 VDNGVGKPQKH-SLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347
Query: 113 KKL 115
K L
Sbjct: 348 KPL 350
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 56
TC G+P +SW+K+ K + DH F I+ V D G Y V++N+
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
T+ G C G+P PE+SW + K L +
Sbjct: 233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAS 265
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 9 CKYEGNPVKTI--SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+Y N KTI S K G+ + N I +VRKEDKG Y + E E+ EL
Sbjct: 47 LEYNYNSTKTIFESEFK-GRVYLEENNGALHISNVRKEDKGTYYMRVLRETEN-----EL 100
Query: 67 KLGGR-FDP 74
K+ FDP
Sbjct: 101 KITLEVFDP 109
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 25 GKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
G+ D + R+ +++ +DKG+YQC+I +++
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-----------RKEDKGMYQCVIRN 55
TC+ P TISW +DG+ +P N +I + + D G Y C N
Sbjct: 38 ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Query: 56 E--QES 59
QES
Sbjct: 98 RIGQES 103
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKE---DKGMYQCV 52
TC Y+G P + W KDG+ VP + +F + SV + G Y C+
Sbjct: 130 ITCSSYQGYPEAEVFW-KDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCL 188
Query: 53 IRNEQESAQASGELKLGGR 71
+RN A G + + G+
Sbjct: 189 VRNPVLQQDAHGSVTITGQ 207
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 19 ISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 77
+++ KD PV + E V + D E K + + V+R +A A E+ + PV
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM-IVLHLPSPVT 347
Query: 78 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+++ E L GP CIA N P+ L K+V
Sbjct: 348 AQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMV 386
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 19 ISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 77
+++ KD PV + E V + D E K + + V+R +A A E+ + PV
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM-IVLHLPSPVT 347
Query: 78 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+++ E L GP CIA N P+ L K+V
Sbjct: 348 AQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMV 386
>pdb|3CSP|A Chain A, Crystal Structure Of The Dm2 Mutant Of Myelin
Oligodendrocyte Glycoprotein
Length = 139
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
RI +VR D+G Y C R+ + +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDAEYQEEAAVELKV 119
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGK 113
G + C A G+P PEI W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 22/72 (30%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKE 44
C+ G+PV I W +G+ D H ID++ +E
Sbjct: 41 LHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 45 DKGMYQCVIRNE 56
D G Y+C N+
Sbjct: 101 DTGTYECRASND 112
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 5 KFFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGMYQC 51
KFFTC G P ++I W G+ + V + + VR ED G+Y+C
Sbjct: 18 KFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 73
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLVNAE 119
S S L+ G + +F C A G P I WY G+K+++ +
Sbjct: 6 SLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQ 45
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 99 SGNPTPEISWYLDGKKL 115
+GNP P+I+WY +G++L
Sbjct: 145 NGNPAPKITWYRNGQRL 161
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
G PP + + +++ G SG P P++SWYL+G+ +
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 10 KYEGNPVKTISWMKDGKPVPD---HNEPV-------FRIDSVRKEDKGMYQCVIRNEQES 59
K G P +SW +G+ V H V + VR D G Y CV +N
Sbjct: 28 KVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGE 87
Query: 60 AQASGELKL 68
A + +L +
Sbjct: 88 ATFTVQLDV 96
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGK 113
G + C A G+P PEI W+ +G+
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQ 60
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 22/72 (30%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKE 44
C+ G+PV I W +G+ D H ID++ +E
Sbjct: 41 LHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 45 DKGMYQCVIRNE 56
D G Y+C N+
Sbjct: 101 DTGTYECRASND 112
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>pdb|1PY9|A Chain A, The Crystal Structure Of An Autoantigen In Multiple
Sclerosis
Length = 116
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 81 TLRIQNVRFSDEGGYTCFFRDHSYQEEAAMELKV 114
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
RI +VR D+G Y C R+ +A+ ELK+
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 19 ISWMKDGKPVPDHNEPVFRI--------DSVRKEDKGMYQCVIRNEQESAQ----ASGEL 66
I W KD + NE + V ED G Y+CV+ E Q S EL
Sbjct: 157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIEL 216
Query: 67 KLGGRFDP--PVIKESFSDETLNPGPNYYFKC---IASGNPTPEISWY 109
++ + + PVI + + G C + +G P + W+
Sbjct: 217 RIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 78 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
++ F DE G F C A G+P P I W K LV+A+
Sbjct: 393 QQVFVDE----GHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 43 KEDKGMYQCVIRN-EQESAQASGELKLGGRFDPPVIKESFSDETLNPGP--------NYY 93
+ D+G Y+C + S QA L++ PP+ +LNPGP
Sbjct: 88 QADEGEYECRVSTFPAGSFQARLRLRV---LVPPL-------PSLNPGPALEEGQGLTLA 137
Query: 94 FKCIASGNPTPEISW 108
C A G+P P ++W
Sbjct: 138 ASCTAEGSPAPSVTW 152
>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 242
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 28 VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN 87
+P+ + I +V K+D Y C + Q+ + ++K+ G +I + D ++
Sbjct: 74 IPETSTSTLTIHNVEKQDIATYYCALWEAQQ--ELGKKIKVFGPGTKLIITDKQLDADVS 131
Query: 88 PGPNYYFKCIA 98
P P + IA
Sbjct: 132 PKPTIFLPSIA 142
>pdb|1IAI|I Chain I, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|H Chain H, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|B Chain B, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 218
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 36 FRIDSVRKEDKGMYQCVIR 54
+++S+R ED G+Y CV+R
Sbjct: 83 LQMNSLRAEDTGIYYCVLR 101
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 31 HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
HN+ + V+K D+G+Y C IR + ES
Sbjct: 81 HNDGSLLLQDVQKADEGIYTCEIRLKNES 109
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 16 VKTISWMKDGKPVPDHNEPVFRI----------DSVRKEDKGMYQCVIRNEQESAQASGE 65
+ ++SW+ V H RI +V +D GMY C++ N + AS
Sbjct: 369 LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
Query: 66 LKLGG 70
L + G
Sbjct: 429 LNVTG 433
>pdb|3QNZ|B Chain B, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|B Chain B, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 220
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 32 NEPVFRIDSVRKEDKGMYQCVIRNE 56
N +++S++ +D MY CVIR +
Sbjct: 79 NTAFLQMNSLKSDDTAMYYCVIRGD 103
>pdb|1JBJ|A Chain A, Cd3 Epsilon And Gamma Ectodomain Fragment Complex In
Single- Chain Construct
Length = 186
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEP--VFRIDSVRKEDKGMYQC 51
TC G KTI W+KDG + N + + + K+ +G YQC
Sbjct: 126 LLTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQC 170
>pdb|3M8O|H Chain H, Human Iga1 Fab Fragment
pdb|3QNX|B Chain B, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|B Chain B, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|D Chain D, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
Length = 221
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 32 NEPVFRIDSVRKEDKGMYQCVIRNE 56
N +++S++ +D MY CVIR +
Sbjct: 79 NTAFLQMNSLKSDDTAMYYCVIRGD 103
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 4 LKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCV 52
L C+ + V++I+W++DG + + N E V DSV D G+Y CV
Sbjct: 20 LLQLRCRLR-DDVQSINWLRDGVQLAESNRTRITGEEVEVQDSV-PADSGLYACV 72
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKC 96
SV +ED G Y C++ +E + GE+K+ P K + S T+ G C
Sbjct: 74 SVTREDTGTYTCMV--SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI--GNRAVLTC 129
Query: 97 I-ASGNPTPEISWYLDG 112
G+P E +W+ DG
Sbjct: 130 SEQDGSPPSEYTWFKDG 146
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGN------PTPEISWYLDGKKLV 116
PVI+ S + + PG +C+ +G+ P+P + Y DG +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSI 52
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 15 PVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
P+ ++ W+ V H N+ V D G+Y C++ N ++ AS
Sbjct: 33 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASA 92
Query: 65 ELKL 68
L +
Sbjct: 93 YLNV 96
>pdb|3KGR|A Chain A, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
pdb|3KGR|B Chain B, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
pdb|3KGR|C Chain C, Crystal Structure Of The Human Leukocyte-Associated
Ig-Like Receptor-1 (Lair-1)
Length = 106
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCV 52
P +E FRIDSV + + G Y+C+
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRCI 83
>pdb|3IY5|B Chain B, Variable Domains Of The Mouse Fab (1aif) Fitted Into The
Cryoem Reconstruction Of The Virus-Fab 16 Complex
Length = 122
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 36 FRIDSVRKEDKGMYQCVIR 54
+++S+R ED G+Y CV+R
Sbjct: 83 LQMNSLRAEDTGIYYCVLR 101
>pdb|2OR9|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2OR9|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2ORB|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab Fragment
pdb|2ORB|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab Fragment
Length = 228
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 30 DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
D N +++S++ ED MY C R+E
Sbjct: 75 DKNALYLQMNSLKSEDTAMYYCARRSE 101
>pdb|3RP1|A Chain A, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|B Chain B, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|C Chain C, Crystal Structure Of Human Lair-1 In C2 Space Group
pdb|3RP1|D Chain D, Crystal Structure Of Human Lair-1 In C2 Space Group
Length = 103
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCV 52
P +E FRIDSV + + G Y+C+
Sbjct: 59 PSESEARFRIDSVSEGNAGPYRCI 82
>pdb|1UCT|A Chain A, Crystal Structure Of The Extracellular Fragment Of Fc
Alpha Receptor I (Cd89)
Length = 218
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 16 VKTISWMKDGKPVPDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL--GGR 71
+K ++ + G+ + NE P F ID + G YQC R + S L+L G
Sbjct: 44 IKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGL 103
Query: 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ P + L PG N C ++ P S +G+
Sbjct: 104 YGKPFLSAD-RGLVLMPGENISLTCSSAHIPFDRFSLAKEGE 144
>pdb|1OVZ|A Chain A, Crystal Structure Of Human Fcari
pdb|1OVZ|B Chain B, Crystal Structure Of Human Fcari
pdb|1OW0|C Chain C, Crystal Structure Of Human Fcari Bound To Iga1-fc
pdb|1OW0|D Chain D, Crystal Structure Of Human Fcari Bound To Iga1-fc
Length = 207
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 16 VKTISWMKDGKPVPDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL--GGR 71
+K ++ + G+ + NE P F ID + G YQC R + S L+L G
Sbjct: 42 IKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGL 101
Query: 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ P + L PG N C ++ P S +G+
Sbjct: 102 YGKPFLSAD-RGLVLMPGENISLTCSSAHIPFDRFSLAKEGE 142
>pdb|1SMO|A Chain A, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47 .
pdb|1SMO|B Chain B, Crystal Structure Of Human Triggering Receptor Expressed
On Myeloid Cells 1 (Trem-1) At 1.47
Length = 119
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 30 DHNEPVFRIDSVRKEDKGMYQCVI 53
DH R+ +++ ED G+YQCVI
Sbjct: 72 DHGLLRVRMVNLQVEDSGLYQCVI 95
>pdb|1Q8M|A Chain A, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|B Chain B, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|C Chain C, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
pdb|1Q8M|D Chain D, Crystal Structure Of The Human Myeloid Cell Activating
Receptor Trem-1
Length = 127
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 30 DHNEPVFRIDSVRKEDKGMYQCVI 53
DH R+ +++ ED G+YQCVI
Sbjct: 77 DHGLLRVRMVNLQVEDSGLYQCVI 100
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 13 GNPVKTISWMKDGKPVPDHNEPVFRID----------SVRKEDKGMYQCVIRNEQESAQA 62
G + +++W+ + H RI +V +D G Y C++ N + A
Sbjct: 337 GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTA 396
Query: 63 SGELKLGGR 71
S L +G +
Sbjct: 397 SATLNVGTK 405
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 5 KFFTCKYEGNPV-KTISWMK-DGKPVP-----------DHNEPVFRIDSVRKEDKGMYQC 51
KFF C+ G+ K ISW +G+ + D + I + +D G+Y+C
Sbjct: 20 KFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79
Query: 52 VIRNE 56
V+ E
Sbjct: 80 VVTAE 84
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 10 KYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
K G T +WMK K + + N I + R+E G Y ++ N+ S
Sbjct: 30 KVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR 89
Query: 61 QASGELKLGGRFDPPV 76
QA L + + DPP
Sbjct: 90 QAQVNLTVVDKPDPPA 105
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 7 FTCKYEGNPVKTISWMK--DGKPVPD--------------HNEPVFRIDSVRKEDKGMYQ 50
C EG P+ I+W + DG + H I V+ D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 51 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN---PGPNYYFKCIASGNPTPEIS 107
C E+A G + D + S++T+ G C NP I
Sbjct: 80 C------EAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 108 WYLDGKKLV 116
W D KLV
Sbjct: 134 WRRD--KLV 140
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 91 NYYFKCIASGNPTPEISWYL 110
N +C+A+G P P I WY
Sbjct: 423 NGMLQCVAAGFPEPTIDWYF 442
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 91 NYYFKCIASGNPTPEISWYL 110
N +C+A+G P P I WY
Sbjct: 398 NGMLQCVAAGFPEPTIDWYF 417
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G KC+ G P P + W G++L +E
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASE 59
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 7 FTCKYEGNPVKTISWMK--DGKPVPD--------------HNEPVFRIDSVRKEDKGMYQ 50
C EG P+ I+W + DG + H I V+ D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 51 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN---PGPNYYFKCIASGNPTPEIS 107
C E+A G + D + S++T+ G C NP I
Sbjct: 80 C------EAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIH 133
Query: 108 WYLDGKKLV 116
W D KLV
Sbjct: 134 WRRD--KLV 140
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G KC+ G P P + W G++L +E
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASE 59
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 89 GPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G KC+ G P P + W G++L +E
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASE 58
>pdb|1K8I|B Chain B, Crystal Structure Of Mouse H2-Dm
Length = 191
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 18 TISWMKDGKPVPDHN 32
TI+WMK+G+ VP H+
Sbjct: 127 TITWMKNGQLVPSHS 141
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 4 LKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCV 52
L C+ + V++I+W++DG + + N E V DS+ D G+Y CV
Sbjct: 26 LLQLRCRLRDD-VQSINWLRDGVQLVESNRTRITGEEVEVRDSI-PADSGLYACV 78
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-RIDSVRK--------EDKGMYQCVIRNE 56
TC+ P + W KDG+ V + + + D+VR+ ED G Y C I +E
Sbjct: 32 VLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE 90
Query: 57 QES 59
S
Sbjct: 91 SAS 93
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKL 68
SV +ED G Y C++ +E + GE+K+
Sbjct: 73 SVTREDTGTYTCMV--SEEGGNSYGEVKV 99
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 15 PVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
P+ ++ W+ V H N+ V D G+Y C++ N ++ AS
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASA 437
Query: 65 ELKL 68
L +
Sbjct: 438 YLNV 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,388,642
Number of Sequences: 62578
Number of extensions: 180846
Number of successful extensions: 894
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 331
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)