Query psy12725
Match_columns 119
No_of_seqs 119 out of 1085
Neff 12.2
Searched_HMMs 46136
Date Fri Aug 16 18:05:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 1.1E-20 2.4E-25 123.4 13.3 114 1-117 255-374 (1051)
2 PHA02826 IL-1 receptor-like pr 99.8 1.5E-17 3.2E-22 94.9 12.2 108 1-117 36-177 (227)
3 KOG4221|consensus 99.8 1E-17 2.2E-22 110.5 10.7 114 1-117 251-371 (1381)
4 KOG3513|consensus 99.8 2.6E-17 5.6E-22 108.0 12.3 113 1-115 345-467 (1051)
5 cd05863 Ig2_VEGFR-3 Second imm 99.8 1.1E-17 2.4E-22 78.3 7.9 64 5-68 1-65 (67)
6 KOG4194|consensus 99.8 1.2E-17 2.6E-22 104.4 9.1 111 2-115 627-748 (873)
7 cd05762 Ig8_MLCK Eighth immuno 99.7 5.8E-17 1.3E-21 81.6 9.4 71 1-71 14-93 (98)
8 cd05745 Ig3_Peroxidasin Third 99.7 3.4E-17 7.4E-22 78.6 7.9 67 1-67 1-73 (74)
9 cd05735 Ig8_DSCAM Eight immuno 99.7 1E-16 2.2E-21 79.3 9.6 69 2-70 1-83 (88)
10 cd05867 Ig4_L1-CAM_like Fourth 99.7 8.9E-17 1.9E-21 77.5 9.2 67 2-68 1-75 (76)
11 cd04975 Ig4_SCFR_like Fourth i 99.7 5.2E-17 1.1E-21 82.0 8.5 69 1-69 17-100 (101)
12 cd05851 Ig3_Contactin-1 Third 99.7 1.3E-16 2.8E-21 78.9 9.6 68 1-68 15-87 (88)
13 cd05852 Ig5_Contactin-1 Fifth 99.7 6.3E-17 1.4E-21 77.3 8.1 66 2-67 1-72 (73)
14 cd05859 Ig4_PDGFR-alpha Fourth 99.7 6.9E-17 1.5E-21 81.6 8.3 69 1-69 17-100 (101)
15 PHA02785 IL-beta-binding prote 99.7 6.6E-16 1.4E-20 92.7 13.4 115 2-117 136-266 (326)
16 cd05868 Ig4_NrCAM Fourth immun 99.7 2.1E-16 4.6E-21 76.1 8.5 67 2-68 1-75 (76)
17 cd05892 Ig_Myotilin_C C-termin 99.7 1.7E-16 3.8E-21 76.0 7.7 63 5-67 1-74 (75)
18 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 4.8E-16 1E-20 76.5 8.8 67 1-67 9-85 (86)
19 cd05864 Ig2_VEGFR-2 Second imm 99.7 3.3E-16 7.1E-21 74.1 7.5 64 5-68 1-68 (70)
20 cd04978 Ig4_L1-NrCAM_like Four 99.7 6.1E-16 1.3E-20 74.6 8.7 67 2-68 1-75 (76)
21 cd04976 Ig2_VEGFR Second immun 99.7 4E-16 8.6E-21 74.2 7.9 65 5-69 1-70 (71)
22 cd04969 Ig5_Contactin_like Fif 99.7 4.9E-16 1.1E-20 74.3 8.3 66 2-67 1-72 (73)
23 cd05730 Ig3_NCAM-1_like Third 99.7 1.3E-15 2.9E-20 76.4 9.4 69 1-69 17-93 (95)
24 cd05893 Ig_Palladin_C C-termin 99.7 4E-16 8.7E-21 74.8 7.1 63 5-67 1-74 (75)
25 PHA02785 IL-beta-binding prote 99.7 1.7E-15 3.7E-20 91.0 11.3 110 2-112 41-164 (326)
26 cd04968 Ig3_Contactin_like Thi 99.7 1.6E-15 3.6E-20 75.0 9.4 68 1-68 15-87 (88)
27 cd05760 Ig2_PTK7 Second immuno 99.7 1.1E-15 2.3E-20 73.9 8.4 65 5-69 1-73 (77)
28 cd05857 Ig2_FGFR Second immuno 99.7 1.6E-15 3.4E-20 74.6 8.8 67 1-67 8-84 (85)
29 cd05723 Ig4_Neogenin Fourth im 99.7 1.5E-15 3.3E-20 72.2 8.3 64 4-67 1-70 (71)
30 cd05737 Ig_Myomesin_like_C C-t 99.7 1.6E-15 3.5E-20 75.6 8.4 67 1-67 15-91 (92)
31 cd05728 Ig4_Contactin-2-like F 99.7 1.4E-15 3.1E-20 74.8 8.0 67 1-67 13-84 (85)
32 cd05865 Ig1_NCAM-1 First immun 99.7 4.2E-15 9.1E-20 74.5 9.2 68 1-68 14-95 (96)
33 cd05876 Ig3_L1-CAM Third immun 99.7 2.8E-15 6.2E-20 71.3 8.0 64 5-68 1-70 (71)
34 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4E-15 8.7E-20 73.9 8.8 67 1-67 14-89 (90)
35 cd05869 Ig5_NCAM-1 Fifth immun 99.6 4.3E-15 9.3E-20 74.8 8.6 66 2-67 17-96 (97)
36 cd05744 Ig_Myotilin_C_like Imm 99.6 4.3E-15 9.2E-20 71.4 8.2 63 5-67 1-74 (75)
37 cd05854 Ig6_Contactin-2 Sixth 99.6 7.7E-15 1.7E-19 72.1 9.3 67 3-69 1-82 (85)
38 cd05856 Ig2_FGFRL1-like Second 99.6 3.1E-15 6.8E-20 73.0 7.9 66 1-66 8-80 (82)
39 cd05746 Ig4_Peroxidasin Fourth 99.6 2.3E-15 4.9E-20 71.3 6.9 61 5-65 1-67 (69)
40 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 6.4E-15 1.4E-19 69.6 8.4 62 2-65 1-67 (69)
41 cd05743 Ig_Perlecan_D2_like Im 99.6 3.3E-15 7.3E-20 72.3 7.6 61 2-62 1-70 (78)
42 cd05748 Ig_Titin_like Immunogl 99.6 6.3E-15 1.4E-19 70.7 8.3 64 4-67 1-73 (74)
43 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 4.2E-15 9.2E-20 72.3 7.8 61 7-67 3-79 (81)
44 cd05725 Ig3_Robo Third immunog 99.6 4.6E-15 1E-19 70.2 7.7 62 5-66 1-67 (69)
45 cd05726 Ig4_Robo Fhird immunog 99.6 6.6E-15 1.4E-19 73.1 8.5 69 2-70 1-83 (90)
46 cd04974 Ig3_FGFR Third immunog 99.6 7.7E-15 1.7E-19 72.9 8.4 67 2-68 1-89 (90)
47 KOG4221|consensus 99.6 3.6E-14 7.8E-19 94.3 13.7 118 1-118 154-281 (1381)
48 cd05855 Ig_TrkB_d5 Fifth domai 99.6 7.7E-15 1.7E-19 70.7 8.1 61 7-67 3-77 (79)
49 cd07702 Ig2_VEGFR-1 Second imm 99.6 6.1E-15 1.3E-19 70.0 7.3 64 5-68 1-70 (72)
50 cd05740 Ig_CEACAM_D4 Fourth im 99.6 2E-14 4.3E-19 71.5 9.3 59 1-60 17-81 (91)
51 cd05763 Ig_1 Subgroup of the i 99.6 1.2E-14 2.6E-19 69.8 8.4 64 5-68 1-74 (75)
52 cd04970 Ig6_Contactin_like Six 99.6 1.7E-14 3.7E-19 70.9 8.9 67 3-69 1-82 (85)
53 cd05747 Ig5_Titin_like M5, fif 99.6 1.5E-14 3.3E-19 72.1 8.8 65 1-65 17-90 (92)
54 KOG4194|consensus 99.6 1.3E-14 2.9E-19 91.2 10.2 111 1-114 517-652 (873)
55 cd05858 Ig3_FGFR-2 Third immun 99.6 1.3E-14 2.7E-19 72.1 8.2 67 2-68 1-89 (90)
56 cd05756 Ig1_IL1R_like First im 99.6 9.8E-15 2.1E-19 72.9 7.7 67 1-67 13-93 (94)
57 cd05764 Ig_2 Subgroup of the i 99.6 1.7E-14 3.7E-19 69.1 8.3 65 2-66 1-72 (74)
58 cd05773 Ig8_hNephrin_like Eigh 99.6 2.5E-14 5.3E-19 73.4 9.3 68 2-69 23-105 (109)
59 cd05731 Ig3_L1-CAM_like Third 99.6 1E-14 2.2E-19 69.4 7.3 64 5-68 1-70 (71)
60 cd05891 Ig_M-protein_C C-termi 99.6 1.7E-14 3.7E-19 71.9 8.3 66 1-66 15-90 (92)
61 cd05870 Ig5_NCAM-2 Fifth immun 99.6 2E-14 4.2E-19 72.5 8.4 66 1-66 15-96 (98)
62 cd05732 Ig5_NCAM-1_like Fifth 99.6 3.3E-14 7.2E-19 71.4 9.1 67 1-67 15-95 (96)
63 cd05853 Ig6_Contactin-4 Sixth 99.6 2.8E-14 6.1E-19 69.7 8.5 67 3-69 1-82 (85)
64 cd05765 Ig_3 Subgroup of the i 99.6 1.8E-14 3.9E-19 70.2 7.4 66 2-67 1-80 (81)
65 cd04973 Ig1_FGFR First immunog 99.6 4.9E-14 1.1E-18 68.4 8.8 63 1-64 8-75 (79)
66 PF07679 I-set: Immunoglobulin 99.6 1.4E-14 3.1E-19 71.9 6.9 67 1-67 14-89 (90)
67 cd05848 Ig1_Contactin-5 First 99.6 3.4E-14 7.5E-19 71.1 7.9 59 2-60 19-85 (94)
68 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 4.5E-14 9.8E-19 67.7 7.9 55 5-59 1-63 (74)
69 cd05736 Ig2_Follistatin_like S 99.6 1.4E-13 3E-18 66.3 8.8 64 5-68 1-73 (76)
70 cd05850 Ig1_Contactin-2 First 99.6 1.7E-13 3.8E-18 68.5 9.2 60 2-61 19-86 (94)
71 KOG4222|consensus 99.5 3.3E-14 7.1E-19 94.0 7.7 111 1-114 239-355 (1281)
72 cd05750 Ig_Pro_neuregulin Immu 99.5 1.1E-13 2.5E-18 66.4 7.4 59 5-63 1-72 (75)
73 cd05749 Ig2_Tyro3_like Second 99.5 2E-13 4.3E-18 66.3 8.1 58 1-60 12-73 (81)
74 cd05724 Ig2_Robo Second immuno 99.5 3.9E-13 8.5E-18 66.2 9.3 60 1-60 10-77 (86)
75 cd05866 Ig1_NCAM-2 First immun 99.5 2.9E-13 6.4E-18 67.3 8.5 65 1-66 14-89 (92)
76 cd05742 Ig1_VEGFR_like First i 99.5 1.6E-13 3.5E-18 67.3 7.4 67 2-68 1-83 (84)
77 cd07693 Ig1_Robo First immunog 99.5 3.3E-13 7.1E-18 68.2 8.7 59 1-59 15-89 (100)
78 cd05849 Ig1_Contactin-1 First 99.5 1.6E-13 3.5E-18 68.5 7.3 59 2-60 19-84 (93)
79 cd05771 IgC_Tapasin_R Tapasin- 99.5 5.5E-13 1.2E-17 71.3 9.6 78 34-114 1-80 (139)
80 cd05722 Ig1_Neogenin First imm 99.5 4.6E-13 9.9E-18 67.2 8.6 59 2-60 14-86 (95)
81 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 8.1E-13 1.7E-17 64.8 8.9 67 2-68 1-82 (84)
82 cd05752 Ig1_FcgammaR_like Frst 99.5 2.5E-13 5.5E-18 65.6 6.7 54 1-56 14-68 (78)
83 cd05874 Ig6_NrCAM Sixth immuno 99.5 4.3E-13 9.3E-18 64.7 7.5 56 5-60 1-69 (77)
84 cd05733 Ig6_L1-CAM_like Sixth 99.5 3.8E-13 8.3E-18 64.9 7.3 56 5-60 1-69 (77)
85 cd04977 Ig1_NCAM-1_like First 99.5 5.5E-13 1.2E-17 66.5 7.9 57 1-58 14-81 (92)
86 cd05895 Ig_Pro_neuregulin-1 Im 99.5 5E-13 1.1E-17 64.4 7.4 60 5-64 1-74 (76)
87 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.2E-12 2.7E-17 66.0 9.0 65 1-65 15-96 (98)
88 cd05734 Ig7_DSCAM Seventh immu 99.5 6.6E-13 1.4E-17 64.4 7.6 56 5-60 1-70 (79)
89 cd05754 Ig3_Perlecan_like Thir 99.5 1.4E-12 3.1E-17 64.1 8.2 64 1-64 15-82 (85)
90 cd05729 Ig2_FGFR_like Second i 99.5 1.8E-12 3.9E-17 63.6 8.3 65 1-65 8-82 (85)
91 KOG4222|consensus 99.5 4.2E-13 9.2E-18 89.0 7.5 112 1-115 145-266 (1281)
92 cd04967 Ig1_Contactin First Ig 99.4 1.6E-12 3.4E-17 64.7 7.9 58 2-59 19-84 (91)
93 cd05875 Ig6_hNeurofascin_like 99.4 1.5E-12 3.2E-17 62.8 7.6 56 5-60 1-69 (77)
94 cd05757 Ig2_IL1R_like Second i 99.4 2E-12 4.4E-17 64.3 7.7 67 1-67 9-85 (92)
95 cd05882 Ig1_Necl-1 First (N-te 99.4 3.5E-12 7.5E-17 63.8 7.9 56 1-56 11-84 (95)
96 smart00408 IGc2 Immunoglobulin 99.4 6E-12 1.3E-16 58.0 7.9 57 1-57 1-62 (63)
97 cd05753 Ig2_FcgammaR_like Seco 99.4 3.3E-12 7.2E-17 62.4 7.2 58 1-58 13-72 (83)
98 cd04979 Ig_Semaphorin_C Immuno 99.4 1E-11 2.2E-16 61.6 8.6 56 1-57 10-74 (89)
99 cd05873 Ig_Sema4D_like Immunog 99.4 1.3E-11 2.7E-16 60.6 7.8 55 1-56 10-70 (87)
100 PHA03376 BARF1; Provisional 99.4 4.1E-11 9E-16 65.6 10.3 108 1-111 25-161 (221)
101 PF00047 ig: Immunoglobulin do 99.3 1.5E-11 3.3E-16 57.2 6.2 52 2-53 1-64 (64)
102 cd07690 Ig1_CD4 First immunogl 99.3 1.4E-11 3E-16 61.4 5.9 58 1-58 6-89 (94)
103 cd07701 Ig1_Necl-3 First (N-te 99.3 8.1E-11 1.8E-15 59.0 8.0 56 1-56 11-84 (95)
104 PHA02826 IL-1 receptor-like pr 99.3 8.1E-11 1.7E-15 67.6 8.9 56 1-56 143-210 (227)
105 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 8.3E-11 1.8E-15 59.0 7.5 64 1-65 14-101 (104)
106 cd05862 Ig1_VEGFR First immuno 99.3 1.4E-10 3E-15 57.1 8.0 67 2-68 1-84 (86)
107 cd05727 Ig2_Contactin-2-like S 99.2 3.9E-11 8.5E-16 59.8 5.7 58 1-58 17-84 (96)
108 PF13895 Ig_2: Immunoglobulin 99.2 5.5E-11 1.2E-15 57.5 6.2 56 1-57 13-68 (80)
109 cd05885 Ig2_Necl-4 Second immu 99.2 1.9E-10 4E-15 55.5 7.8 56 5-60 2-69 (80)
110 cd05717 Ig1_Necl-1-3_like Firs 99.2 2.7E-10 5.9E-15 57.1 8.6 57 1-57 11-85 (95)
111 cd05871 Ig_Semaphorin_classIII 99.2 2.4E-10 5.2E-15 56.8 8.2 54 2-56 11-75 (91)
112 cd05898 Ig5_KIRREL3 Fifth immu 99.2 6.8E-10 1.5E-14 55.7 8.8 65 1-65 15-96 (98)
113 cd05759 Ig2_KIRREL3-like Secon 99.2 5.1E-10 1.1E-14 54.6 7.7 64 4-67 1-79 (82)
114 cd05897 Ig2_IL1R2_like Second 99.2 5.8E-10 1.3E-14 55.6 7.8 57 2-58 10-79 (95)
115 cd05751 Ig1_LILRB1_like First 99.1 7.6E-10 1.6E-14 55.0 7.3 55 1-56 15-75 (91)
116 cd05881 Ig1_Necl-2 First (N-te 99.1 2.3E-09 4.9E-14 53.5 8.3 56 1-56 11-84 (95)
117 cd05878 Ig_Aggrecan_like Immun 99.1 4E-09 8.7E-14 54.2 9.0 69 1-69 1-107 (110)
118 smart00409 IG Immunoglobulin. 99.1 2.4E-09 5.2E-14 52.0 7.9 61 1-61 8-78 (86)
119 smart00410 IG_like Immunoglobu 99.1 2.4E-09 5.2E-14 52.0 7.9 61 1-61 8-78 (86)
120 cd05860 Ig4_SCFR Fourth immuno 99.1 5.3E-09 1.1E-13 52.4 8.6 68 1-68 17-99 (101)
121 cd05714 Ig_CSPGs_LP Immunoglob 99.1 7.1E-09 1.5E-13 53.0 9.2 68 1-68 1-102 (106)
122 cd05879 Ig_P0 Immunoglobulin ( 99.1 4.6E-09 1E-13 54.4 8.3 67 1-67 12-113 (116)
123 cd05900 Ig_Aggrecan Immunoglob 99.0 9.9E-09 2.1E-13 52.8 9.2 68 1-68 1-108 (112)
124 cd05872 Ig_Sema4B_like Immunog 99.0 4.8E-09 1E-13 51.3 7.7 54 1-55 10-68 (85)
125 cd05845 Ig2_L1-CAM_like Second 99.0 1.7E-09 3.7E-14 53.9 5.9 57 1-57 17-82 (95)
126 cd05713 Ig_MOG_like Immunoglob 99.0 5.7E-09 1.2E-13 52.7 7.8 65 2-66 1-97 (100)
127 cd05877 Ig_LP_like Immunoglobu 99.0 1.4E-08 3.1E-13 51.8 8.7 69 1-69 1-103 (106)
128 cd05741 Ig_CEACAM_D1_like Firs 99.0 1.2E-08 2.7E-13 50.7 8.2 56 2-57 1-80 (92)
129 cd05883 Ig2_Necl-2 Second immu 99.0 3.2E-08 6.9E-13 48.0 8.5 54 5-58 2-68 (82)
130 cd05851 Ig3_Contactin-1 Third 98.9 4.1E-09 8.8E-14 52.1 4.7 43 74-116 1-43 (88)
131 cd07693 Ig1_Robo First immunog 98.9 5.1E-09 1.1E-13 52.7 5.1 44 74-117 1-44 (100)
132 cd05718 Ig1_PVR_like First imm 98.9 4.6E-08 1E-12 49.2 8.4 66 3-68 1-97 (98)
133 cd05846 Ig1_MRC-OX-2_like Firs 98.9 6.8E-08 1.5E-12 48.6 8.7 66 2-67 1-95 (97)
134 cd04983 IgV_TCR_alpha_like Imm 98.9 1.5E-08 3.3E-13 51.9 6.2 57 1-57 12-93 (109)
135 cd05774 Ig_CEACAM_D1 First imm 98.9 4.8E-08 1.1E-12 49.7 7.8 57 1-57 12-93 (105)
136 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.7E-08 3.7E-13 50.8 6.1 57 1-57 3-84 (97)
137 cd05762 Ig8_MLCK Eighth immuno 98.8 1.4E-08 3.1E-13 51.2 5.0 42 76-117 2-43 (98)
138 cd05747 Ig5_Titin_like M5, fif 98.8 1.6E-08 3.4E-13 50.4 5.2 44 74-117 3-46 (92)
139 cd05888 Ig1_Nectin-4_like Frst 98.8 1.9E-07 4.2E-12 47.2 8.8 64 3-66 1-97 (100)
140 cd05899 IgV_TCR_beta Immunoglo 98.8 5.5E-08 1.2E-12 50.0 6.9 55 1-56 12-94 (110)
141 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.3E-07 2.8E-12 49.1 8.1 58 1-58 12-103 (115)
142 cd05749 Ig2_Tyro3_like Second 98.8 2E-08 4.3E-13 48.8 4.7 36 81-116 5-41 (81)
143 PF13927 Ig_3: Immunoglobulin 98.8 3.8E-09 8.2E-14 50.3 2.2 51 5-55 18-75 (75)
144 cd05886 Ig1_Nectin-1_like Firs 98.8 4.3E-07 9.3E-12 45.8 9.4 35 33-67 62-97 (99)
145 cd05715 Ig_P0-like Immunoglobu 98.8 1.9E-07 4.1E-12 48.5 8.3 58 1-58 12-104 (116)
146 cd05901 Ig_Versican Immunoglob 98.8 5.2E-07 1.1E-11 46.7 9.6 37 33-69 78-114 (117)
147 cd00099 IgV Immunoglobulin var 98.8 3.7E-08 8E-13 50.1 5.3 57 1-57 5-90 (105)
148 cd05711 Ig_FcalphaRI Immunoglo 98.7 1.2E-07 2.7E-12 47.4 6.7 53 2-55 15-76 (94)
149 cd05902 Ig_Neurocan Immunoglob 98.7 3.5E-07 7.7E-12 47.0 8.1 69 1-69 1-107 (110)
150 cd04984 IgV_L_lambda Immunoglo 98.7 1.3E-07 2.9E-12 47.6 6.4 55 1-55 5-84 (98)
151 cd05848 Ig1_Contactin-5 First 98.7 9.1E-08 2E-12 47.8 5.5 30 88-117 18-47 (94)
152 cd07694 Ig2_CD4 Second immunog 98.7 6.5E-07 1.4E-11 43.6 7.9 66 2-67 14-84 (88)
153 PHA02987 Ig domain OX-2-like p 98.7 6.6E-07 1.4E-11 49.5 8.9 68 2-69 30-122 (189)
154 cd00098 IgC Immunoglobulin Con 98.7 1.4E-07 3E-12 47.2 5.9 57 2-58 13-86 (95)
155 cd07705 Ig2_Necl-1 Second immu 98.7 7.8E-07 1.7E-11 43.5 8.2 54 5-58 2-70 (83)
156 cd05737 Ig_Myomesin_like_C C-t 98.7 9.4E-08 2E-12 47.6 5.0 35 83-117 10-44 (92)
157 PF07679 I-set: Immunoglobulin 98.7 7.8E-08 1.7E-12 47.5 4.6 43 75-117 1-43 (90)
158 cd05722 Ig1_Neogenin First imm 98.7 1E-07 2.2E-12 47.7 5.0 37 81-117 6-42 (95)
159 cd05728 Ig4_Contactin-2-like F 98.6 1.2E-07 2.6E-12 46.5 4.9 38 80-117 5-42 (85)
160 cd05761 Ig2_Necl-1-4_like Seco 98.6 5.3E-07 1.2E-11 43.9 7.1 55 5-59 2-70 (82)
161 cd05752 Ig1_FcgammaR_like Frst 98.6 1.5E-07 3.2E-12 45.4 5.0 40 77-116 3-43 (78)
162 cd04980 IgV_L_kappa Immunoglob 98.6 2E-07 4.3E-12 47.6 5.7 56 1-56 14-93 (106)
163 cd05739 Ig3_RPTP_IIa_LAR_like 98.6 1.2E-07 2.6E-12 44.7 4.5 29 89-117 1-29 (69)
164 cd04982 IgV_TCR_gamma Immunogl 98.6 1.9E-07 4.2E-12 48.4 5.7 55 1-55 12-98 (116)
165 cd05887 Ig1_Nectin-3_like Firs 98.6 1.7E-06 3.7E-11 43.4 8.7 66 3-68 1-95 (96)
166 cd05745 Ig3_Peroxidasin Third 98.6 1.1E-07 2.3E-12 45.4 4.2 30 88-117 1-30 (74)
167 cd05850 Ig1_Contactin-2 First 98.6 2.3E-07 5E-12 46.4 5.5 28 89-116 19-46 (94)
168 cd05730 Ig3_NCAM-1_like Third 98.6 1.6E-07 3.4E-12 47.0 4.8 33 85-117 14-46 (95)
169 cd05884 Ig2_Necl-3 Second immu 98.6 6.5E-07 1.4E-11 43.7 6.7 54 5-58 2-70 (83)
170 cd05869 Ig5_NCAM-1 Fifth immun 98.6 1.7E-07 3.7E-12 47.1 4.7 42 75-116 3-44 (97)
171 cd04972 Ig_TrkABC_d4 Fourth do 98.6 2.1E-07 4.5E-12 46.1 5.0 34 84-117 10-43 (90)
172 cd05889 Ig1_DNAM-1_like First 98.6 1.9E-06 4.1E-11 43.2 8.3 62 3-64 1-91 (96)
173 PF07686 V-set: Immunoglobulin 98.6 3E-07 6.6E-12 47.2 5.7 56 1-56 15-101 (114)
174 cd05868 Ig4_NrCAM Fourth immun 98.6 1.5E-07 3.3E-12 45.2 4.3 28 89-116 1-28 (76)
175 cd05867 Ig4_L1-CAM_like Fourth 98.6 1.7E-07 3.8E-12 44.9 4.4 29 89-117 1-29 (76)
176 cd05755 Ig2_ICAM-1_like Second 98.6 6.8E-07 1.5E-11 45.0 6.6 57 1-58 15-86 (100)
177 cd04975 Ig4_SCFR_like Fourth i 98.6 1.6E-07 3.5E-12 47.5 4.1 35 83-117 12-47 (101)
178 cd05849 Ig1_Contactin-1 First 98.6 3.1E-07 6.7E-12 45.8 5.0 28 89-116 19-46 (93)
179 cd04968 Ig3_Contactin_like Thi 98.6 2.5E-07 5.4E-12 45.6 4.6 40 77-116 4-43 (88)
180 KOG3515|consensus 98.5 1.4E-06 3E-11 57.4 8.8 114 1-116 21-141 (741)
181 cd05857 Ig2_FGFR Second immuno 98.5 2.9E-07 6.4E-12 45.0 4.6 33 85-117 5-37 (85)
182 cd05859 Ig4_PDGFR-alpha Fourth 98.5 2.8E-07 6E-12 46.7 4.1 33 85-117 14-46 (101)
183 cd05894 Ig_C5_MyBP-C C5 immuno 98.5 3.3E-07 7.1E-12 45.1 4.3 33 85-117 6-38 (86)
184 cd05716 Ig_pIgR Immunoglobulin 98.5 1.1E-06 2.3E-11 44.3 6.3 57 1-57 6-87 (98)
185 KOG3515|consensus 98.5 7.8E-07 1.7E-11 58.6 6.9 116 2-117 112-250 (741)
186 cd04978 Ig4_L1-NrCAM_like Four 98.4 6.1E-07 1.3E-11 42.9 4.2 29 89-117 1-29 (76)
187 cd07706 IgV_TCR_delta Immunogl 98.4 1.1E-06 2.4E-11 45.6 5.3 56 1-56 13-94 (116)
188 cd05732 Ig5_NCAM-1_like Fifth 98.4 7.7E-07 1.7E-11 44.5 4.6 42 74-116 2-43 (96)
189 cd05863 Ig2_VEGFR-3 Second imm 98.4 4.9E-07 1.1E-11 42.3 3.5 25 92-116 1-25 (67)
190 cd05720 Ig_CD8_alpha Immunoglo 98.4 1.8E-06 3.9E-11 44.0 5.7 55 1-55 5-90 (104)
191 cd07700 IgV_CD8_beta Immunoglo 98.4 2E-06 4.2E-11 44.1 5.5 55 1-55 5-93 (107)
192 cd00096 Ig Immunoglobulin doma 98.4 2.8E-06 6.1E-11 39.2 5.7 53 5-57 1-66 (74)
193 cd05892 Ig_Myotilin_C C-termin 98.4 9.9E-07 2.2E-11 42.2 4.0 25 92-116 1-25 (75)
194 cd05758 Ig5_KIRREL3-like Fifth 98.4 2E-06 4.4E-11 43.3 5.3 43 74-117 2-45 (98)
195 cd05891 Ig_M-protein_C C-termi 98.4 1.5E-06 3.2E-11 43.3 4.7 35 83-117 10-44 (92)
196 cd05852 Ig5_Contactin-1 Fifth 98.4 1E-06 2.2E-11 42.0 3.9 29 89-117 1-29 (73)
197 smart00407 IGc1 Immunoglobulin 98.4 6E-06 1.3E-10 39.5 6.5 54 4-57 1-71 (75)
198 cd05724 Ig2_Robo Second immuno 98.3 1.8E-06 3.8E-11 42.3 4.6 36 82-117 4-40 (86)
199 cd05870 Ig5_NCAM-2 Fifth immun 98.3 2.1E-06 4.5E-11 43.2 5.0 37 74-111 2-38 (98)
200 cd04967 Ig1_Contactin First Ig 98.3 3.3E-06 7.1E-11 41.9 5.6 29 88-116 18-46 (91)
201 cd05743 Ig_Perlecan_D2_like Im 98.3 1.6E-06 3.4E-11 41.8 4.4 28 89-116 1-28 (78)
202 cd05723 Ig4_Neogenin Fourth im 98.3 1.6E-06 3.5E-11 41.0 4.2 27 91-117 1-27 (71)
203 cd05740 Ig_CEACAM_D4 Fourth im 98.3 3.7E-06 8.1E-11 41.8 5.6 34 83-117 12-45 (91)
204 cd04969 Ig5_Contactin_like Fif 98.3 2.1E-06 4.6E-11 40.8 4.4 29 89-117 1-29 (73)
205 cd05712 Ig_Siglec_N Immunoglob 98.3 6.5E-06 1.4E-10 42.9 6.6 56 1-56 13-102 (119)
206 cd05772 IgC_SIRP Signal-regula 98.3 2.5E-05 5.3E-10 40.3 8.4 58 2-60 21-95 (111)
207 cd04973 Ig1_FGFR First immunog 98.3 2.2E-06 4.8E-11 41.4 4.2 34 83-117 3-36 (79)
208 cd05893 Ig_Palladin_C C-termin 98.3 1.9E-06 4.1E-11 41.3 3.8 26 92-117 1-26 (75)
209 cd05865 Ig1_NCAM-1 First immun 98.3 2.5E-06 5.5E-11 42.8 4.4 36 81-116 7-44 (96)
210 cd05874 Ig6_NrCAM Sixth immuno 98.3 1.6E-06 3.5E-11 41.7 3.6 25 92-116 1-25 (77)
211 cd05760 Ig2_PTK7 Second immuno 98.3 1.8E-06 4E-11 41.5 3.8 26 92-117 1-26 (77)
212 cd05733 Ig6_L1-CAM_like Sixth 98.3 1.5E-06 3.2E-11 41.8 3.4 25 92-116 1-25 (77)
213 cd05864 Ig2_VEGFR-2 Second imm 98.3 2.1E-06 4.6E-11 40.5 3.6 25 93-117 2-26 (70)
214 cd07692 Ig_CD3_epsilon Immunog 98.2 6.6E-06 1.4E-10 37.9 4.9 50 2-56 7-56 (65)
215 cd05773 Ig8_hNephrin_like Eigh 98.2 3.9E-06 8.5E-11 43.1 4.6 29 88-116 22-50 (109)
216 cd04976 Ig2_VEGFR Second immun 98.2 2.6E-06 5.6E-11 40.3 3.7 26 92-117 1-26 (71)
217 cd05744 Ig_Myotilin_C_like Imm 98.2 3.2E-06 6.9E-11 40.4 4.0 26 92-117 1-26 (75)
218 cd05875 Ig6_hNeurofascin_like 98.2 2.7E-06 5.9E-11 40.9 3.7 25 92-116 1-25 (77)
219 cd05735 Ig8_DSCAM Eight immuno 98.2 4.2E-06 9.2E-11 41.3 4.4 29 89-117 1-29 (88)
220 cd07702 Ig2_VEGFR-1 Second imm 98.2 3.2E-06 7E-11 40.1 3.6 26 92-117 1-26 (72)
221 cd07698 IgC_MHC_I_alpha3 Class 98.2 3.4E-05 7.4E-10 38.5 7.3 56 2-57 14-83 (93)
222 cd05856 Ig2_FGFRL1-like Second 98.2 3.5E-06 7.6E-11 40.8 3.7 31 86-116 6-36 (82)
223 cd05766 IgC_MHC_II_beta Class 98.2 4.4E-05 9.6E-10 38.2 7.6 56 2-57 14-83 (94)
224 cd05748 Ig_Titin_like Immunogl 98.2 6.5E-06 1.4E-10 39.2 4.2 27 91-117 1-27 (74)
225 cd04981 IgV_H Immunoglobulin ( 98.1 1.1E-05 2.3E-10 42.0 5.2 55 1-55 11-97 (117)
226 cd05770 IgC_beta2m Class I maj 98.1 5.2E-05 1.1E-09 37.8 7.4 56 2-57 15-83 (93)
227 cd05746 Ig4_Peroxidasin Fourth 98.1 3.5E-06 7.6E-11 39.6 3.1 26 92-117 1-26 (69)
228 cd05738 Ig2_RPTP_IIa_LAR_like 98.1 5.6E-06 1.2E-10 39.5 3.7 25 92-116 1-25 (74)
229 cd05855 Ig_TrkB_d5 Fifth domai 98.1 5.6E-06 1.2E-10 40.0 3.7 25 93-117 2-26 (79)
230 smart00406 IGv Immunoglobulin 98.1 1E-05 2.2E-10 38.9 4.3 50 4-53 1-81 (81)
231 cd05873 Ig_Sema4D_like Immunog 98.1 1.1E-05 2.3E-10 39.8 4.2 37 81-118 3-39 (87)
232 cd07699 IgC_L Immunoglobulin C 98.1 1.7E-05 3.6E-10 40.1 4.9 28 2-29 17-46 (100)
233 cd04971 Ig_TrKABC_d5 Fifth dom 98.1 9.3E-06 2E-10 39.5 3.6 26 93-118 2-27 (81)
234 PHA02633 hypothetical protein; 98.0 3.6E-05 7.8E-10 35.0 5.1 41 28-68 12-52 (63)
235 cd05771 IgC_Tapasin_R Tapasin- 98.0 8.2E-05 1.8E-09 39.9 7.5 57 2-58 53-132 (139)
236 cd07691 Ig_CD3_gamma_delta Imm 98.0 6.1E-05 1.3E-09 35.0 5.9 48 3-55 7-54 (69)
237 PF08205 C2-set_2: CD80-like C 98.0 4.8E-05 1E-09 37.5 6.2 57 2-58 14-85 (89)
238 cd05767 IgC_MHC_II_alpha Class 98.0 9.4E-05 2E-09 37.0 7.1 56 2-57 15-84 (94)
239 cd07696 IgC_CH3 CH3 domain (th 98.0 3E-05 6.5E-10 38.9 5.3 26 1-26 13-41 (96)
240 cd05866 Ig1_NCAM-2 First immun 98.0 2.2E-05 4.8E-10 39.1 4.7 36 80-116 6-42 (92)
241 cd05876 Ig3_L1-CAM Third immun 98.0 7.4E-06 1.6E-10 38.7 2.9 25 92-116 1-25 (71)
242 PF13895 Ig_2: Immunoglobulin 98.0 2.1E-05 4.5E-10 37.7 4.5 34 84-117 9-42 (80)
243 cd04974 Ig3_FGFR Third immunog 98.0 1.3E-05 2.9E-10 39.7 3.6 23 89-111 1-23 (90)
244 cd05847 IgC_CH2_IgE CH2 domain 98.0 6.9E-05 1.5E-09 37.5 6.1 55 3-57 15-86 (94)
245 cd05750 Ig_Pro_neuregulin Immu 98.0 1.4E-05 2.9E-10 38.0 3.4 26 92-117 1-27 (75)
246 cd05719 Ig2_PVR_like Second im 98.0 0.00011 2.4E-09 36.8 6.7 65 4-68 17-93 (95)
247 cd05726 Ig4_Robo Fhird immunog 97.9 1.4E-05 3E-10 39.6 3.2 26 89-114 1-26 (90)
248 cd05736 Ig2_Follistatin_like S 97.9 2E-05 4.4E-10 37.6 3.7 25 93-117 2-26 (76)
249 cd05755 Ig2_ICAM-1_like Second 97.9 7.2E-05 1.6E-09 37.8 5.7 41 77-117 4-47 (100)
250 cd05764 Ig_2 Subgroup of the i 97.9 3.2E-05 7E-10 36.7 4.2 28 89-116 1-29 (74)
251 cd07703 Ig2_Nectin-2_like Seco 97.9 9.5E-05 2.1E-09 37.0 5.9 65 4-68 17-93 (95)
252 PHA03273 envelope glycoprotein 97.9 0.00033 7.3E-09 44.1 9.2 79 35-116 199-280 (486)
253 cd05729 Ig2_FGFR_like Second i 97.9 4.6E-05 9.9E-10 37.0 4.6 31 86-116 6-36 (85)
254 cd05858 Ig3_FGFR-2 Third immun 97.9 3.8E-05 8.3E-10 38.0 4.4 23 89-111 1-23 (90)
255 cd05765 Ig_3 Subgroup of the i 97.9 2.1E-05 4.5E-10 38.0 3.3 24 89-112 1-24 (81)
256 cd05882 Ig1_Necl-1 First (N-te 97.9 2.2E-05 4.7E-10 39.4 3.4 31 83-113 6-36 (95)
257 cd05731 Ig3_L1-CAM_like Third 97.9 2.4E-05 5.3E-10 36.7 3.5 25 92-116 1-25 (71)
258 cd05854 Ig6_Contactin-2 Sixth 97.9 4.4E-05 9.5E-10 37.4 4.4 27 90-116 1-29 (85)
259 PF07654 C1-set: Immunoglobuli 97.9 0.00011 2.4E-09 35.8 5.8 54 2-58 8-78 (83)
260 PHA03270 envelope glycoprotein 97.9 0.0005 1.1E-08 43.0 9.5 79 35-116 183-264 (466)
261 cd05725 Ig3_Robo Third immunog 97.9 2.4E-05 5.1E-10 36.7 3.1 25 92-116 1-25 (69)
262 cd05753 Ig2_FcgammaR_like Seco 97.9 5.9E-05 1.3E-09 36.8 4.6 34 83-116 8-42 (83)
263 cd05885 Ig2_Necl-4 Second immu 97.9 4.7E-05 1E-09 36.9 4.1 26 92-117 2-28 (80)
264 cd04977 Ig1_NCAM-1_like First 97.8 5.1E-05 1.1E-09 37.8 4.1 35 81-116 7-42 (92)
265 cd04979 Ig_Semaphorin_C Immuno 97.8 3.6E-05 7.9E-10 38.0 3.5 32 84-116 6-37 (89)
266 cd04970 Ig6_Contactin_like Six 97.8 6.6E-05 1.4E-09 36.7 4.4 27 90-116 1-29 (85)
267 cd05763 Ig_1 Subgroup of the i 97.8 2.6E-05 5.7E-10 37.2 2.8 23 92-114 1-23 (75)
268 cd05756 Ig1_IL1R_like First im 97.8 2.1E-05 4.6E-10 39.3 2.2 32 84-115 9-45 (94)
269 smart00408 IGc2 Immunoglobulin 97.8 8.4E-05 1.8E-09 33.5 4.1 29 88-116 1-29 (63)
270 cd07689 Ig2_VCAM-1 Second immu 97.8 0.00042 9E-09 34.8 6.6 55 1-56 14-85 (99)
271 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00027 5.8E-09 35.9 6.0 27 2-28 16-44 (102)
272 cd05898 Ig5_KIRREL3 Fifth immu 97.7 0.00014 3.1E-09 36.6 4.8 43 74-117 2-45 (98)
273 PHA03269 envelope glycoprotein 97.7 0.0013 2.9E-08 41.9 9.6 81 34-117 289-373 (566)
274 cd05772 IgC_SIRP Signal-regula 97.7 0.00024 5.2E-09 36.7 5.3 33 85-117 17-51 (111)
275 cd05759 Ig2_KIRREL3-like Secon 97.7 0.00014 3E-09 35.3 4.3 26 92-117 2-28 (82)
276 cd05754 Ig3_Perlecan_like Thir 97.7 0.00017 3.6E-09 35.2 4.5 33 83-115 10-43 (85)
277 cd05883 Ig2_Necl-2 Second immu 97.6 0.0002 4.4E-09 34.8 4.4 26 92-117 2-28 (82)
278 cd07697 IgC_TCR_gamma T cell r 97.6 0.00042 9.1E-09 34.8 5.6 28 2-29 16-45 (96)
279 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.0007 1.5E-08 34.0 6.0 65 2-66 16-93 (97)
280 cd07699 IgC_L Immunoglobulin C 97.6 0.00022 4.7E-09 36.1 4.2 31 86-116 14-46 (100)
281 cd07701 Ig1_Necl-3 First (N-te 97.6 0.00014 2.9E-09 36.5 3.4 29 82-110 5-33 (95)
282 cd05769 IgC_TCR_beta T cell re 97.6 0.00063 1.4E-08 35.3 5.8 28 2-29 18-47 (115)
283 PHA03271 envelope glycoprotein 97.6 0.0021 4.5E-08 40.3 8.7 82 34-117 207-291 (490)
284 cd05742 Ig1_VEGFR_like First i 97.5 0.00015 3.3E-09 35.3 3.2 27 89-115 1-29 (84)
285 cd05853 Ig6_Contactin-4 Sixth 97.5 0.00036 7.7E-09 34.3 4.2 27 90-116 1-29 (85)
286 cd05895 Ig_Pro_neuregulin-1 Im 97.5 0.00019 4.1E-09 34.3 3.1 25 92-116 1-26 (76)
287 cd05768 IgC_CH4 CH4 domain (fo 97.5 0.00051 1.1E-08 34.9 4.8 31 86-116 13-45 (102)
288 cd05761 Ig2_Necl-1-4_like Seco 97.5 0.00045 9.8E-09 33.6 4.3 25 92-116 2-27 (82)
289 cd05734 Ig7_DSCAM Seventh immu 97.5 0.00015 3.1E-09 35.0 2.5 21 92-112 1-21 (79)
290 cd05766 IgC_MHC_II_beta Class 97.4 0.00088 1.9E-08 33.5 5.3 31 87-117 12-44 (94)
291 cd05884 Ig2_Necl-3 Second immu 97.4 0.0005 1.1E-08 33.6 4.3 26 92-117 2-28 (83)
292 cd05861 Ig1_PDGFR-alphabeta Fr 97.4 0.00036 7.8E-09 34.1 3.8 25 89-113 1-25 (84)
293 cd07690 Ig1_CD4 First immunogl 97.4 0.00052 1.1E-08 34.4 4.3 28 86-113 4-31 (94)
294 cd05767 IgC_MHC_II_alpha Class 97.4 0.00085 1.8E-08 33.6 5.0 30 88-117 14-45 (94)
295 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.00092 2E-08 33.3 5.1 26 89-114 14-41 (93)
296 cd07705 Ig2_Necl-1 Second immu 97.4 0.00062 1.3E-08 33.2 4.4 26 92-117 2-28 (83)
297 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.00086 1.9E-08 33.6 4.9 26 2-27 16-43 (95)
298 cd00098 IgC Immunoglobulin Con 97.4 0.00051 1.1E-08 34.2 4.1 31 87-117 11-43 (95)
299 cd04986 IgC_CH2 CH2 domain (se 97.4 0.0011 2.3E-08 33.5 5.1 26 2-27 19-47 (99)
300 cd05770 IgC_beta2m Class I maj 97.4 0.0011 2.3E-08 33.1 5.0 30 87-116 13-44 (93)
301 PF00047 ig: Immunoglobulin do 97.3 0.00069 1.5E-08 31.0 3.8 28 89-116 1-29 (64)
302 cd07697 IgC_TCR_gamma T cell r 97.3 0.0013 2.7E-08 33.1 4.6 32 86-117 13-46 (96)
303 cd05769 IgC_TCR_beta T cell re 97.3 0.0011 2.3E-08 34.5 4.5 32 86-117 15-48 (115)
304 PHA02982 hypothetical protein; 97.2 0.0012 2.7E-08 37.5 4.7 57 1-57 38-123 (251)
305 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0029 6.2E-08 31.8 5.3 27 88-114 15-43 (95)
306 PHA02914 Immunoglobulin-like d 97.1 0.025 5.3E-07 35.7 9.9 107 1-116 278-422 (500)
307 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0053 1.1E-07 31.9 5.9 52 2-53 13-93 (115)
308 PF08205 C2-set_2: CD80-like C 97.1 0.00094 2E-08 32.8 3.2 27 89-115 14-41 (89)
309 cd05727 Ig2_Contactin-2-like S 97.1 0.0011 2.4E-08 33.3 3.4 32 84-115 13-45 (96)
310 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0024 5.1E-08 32.0 4.5 29 88-116 13-43 (94)
311 cd05751 Ig1_LILRB1_like First 97.1 0.003 6.4E-08 31.3 4.9 38 75-114 3-40 (91)
312 cd05757 Ig2_IL1R_like Second i 97.0 0.00064 1.4E-08 33.9 2.3 33 85-117 6-43 (92)
313 smart00407 IGc1 Immunoglobulin 97.0 0.0022 4.7E-08 30.6 3.9 25 92-116 2-28 (75)
314 cd05845 Ig2_L1-CAM_like Second 97.0 0.0016 3.4E-08 32.7 3.3 32 83-114 12-44 (95)
315 cd05717 Ig1_Necl-1-3_like Firs 96.9 0.0019 4E-08 32.2 3.5 28 83-110 6-33 (95)
316 PF08204 V-set_CD47: CD47 immu 96.9 0.0014 3.1E-08 34.7 3.0 66 2-68 27-119 (130)
317 cd05899 IgV_TCR_beta Immunoglo 96.8 0.0037 8.1E-08 32.1 4.2 29 82-111 6-34 (110)
318 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0035 7.5E-08 31.5 4.0 29 85-113 10-41 (96)
319 PF07654 C1-set: Immunoglobuli 96.8 0.0037 8E-08 30.4 3.7 30 88-117 7-38 (83)
320 smart00409 IG Immunoglobulin. 96.8 0.0061 1.3E-07 28.9 4.5 31 85-115 5-36 (86)
321 smart00410 IG_like Immunoglobu 96.8 0.0061 1.3E-07 28.9 4.5 31 85-115 5-36 (86)
322 cd04983 IgV_TCR_alpha_like Imm 96.7 0.0053 1.2E-07 31.3 4.2 29 83-111 7-35 (109)
323 cd05860 Ig4_SCFR Fourth immuno 96.7 0.004 8.8E-08 31.6 3.5 33 84-116 13-46 (101)
324 cd05871 Ig_Semaphorin_classIII 96.6 0.0043 9.2E-08 30.8 3.2 25 86-111 8-32 (91)
325 cd04980 IgV_L_kappa Immunoglob 96.6 0.0093 2E-07 30.3 4.4 30 82-111 8-38 (106)
326 cd05872 Ig_Sema4B_like Immunog 96.5 0.005 1.1E-07 30.3 3.0 32 85-117 7-38 (85)
327 PHA03042 CD47-like protein; Pr 96.4 0.068 1.5E-06 32.0 7.6 67 2-69 31-105 (286)
328 cd04982 IgV_TCR_gamma Immunogl 96.4 0.0096 2.1E-07 30.8 3.9 29 83-111 7-37 (116)
329 cd05711 Ig_FcalphaRI Immunoglo 96.3 0.023 5E-07 28.4 5.0 31 83-114 9-39 (94)
330 cd05897 Ig2_IL1R2_like Second 96.1 0.0078 1.7E-07 30.2 2.6 31 86-116 7-42 (95)
331 PF07354 Sp38: Zona-pellucida- 96.1 0.028 6E-07 33.4 5.1 43 15-57 11-60 (271)
332 KOG4597|consensus 96.1 0.015 3.2E-07 37.3 4.2 68 1-68 210-291 (560)
333 PF13927 Ig_3: Immunoglobulin 96.1 0.006 1.3E-07 28.5 2.0 18 92-109 18-36 (75)
334 cd05881 Ig1_Necl-2 First (N-te 96.0 0.022 4.7E-07 28.6 4.0 31 83-113 6-36 (95)
335 cd04984 IgV_L_lambda Immunoglo 95.8 0.031 6.8E-07 28.0 4.0 27 85-111 2-30 (98)
336 cd04986 IgC_CH2 CH2 domain (se 95.7 0.043 9.3E-07 27.8 4.2 29 86-114 16-47 (99)
337 cd00099 IgV Immunoglobulin var 95.6 0.034 7.4E-07 28.0 3.8 28 85-112 2-30 (105)
338 cd05862 Ig1_VEGFR First immuno 95.5 0.04 8.8E-07 27.0 3.7 25 89-113 1-27 (86)
339 cd05720 Ig_CD8_alpha Immunoglo 95.3 0.051 1.1E-06 27.6 3.9 28 85-112 2-29 (104)
340 cd04981 IgV_H Immunoglobulin ( 95.1 0.072 1.6E-06 27.8 4.0 31 81-111 4-36 (117)
341 cd07692 Ig_CD3_epsilon Immunog 95.1 0.023 5.1E-07 26.3 1.9 27 87-116 5-31 (65)
342 cd07706 IgV_TCR_delta Immunogl 94.8 0.099 2.2E-06 27.0 4.1 29 83-111 8-37 (116)
343 cd07700 IgV_CD8_beta Immunoglo 94.7 0.094 2E-06 26.8 3.8 27 85-111 2-29 (107)
344 cd05774 Ig_CEACAM_D1 First imm 94.6 0.086 1.9E-06 27.0 3.5 29 83-111 7-35 (105)
345 cd05741 Ig_CEACAM_D1_like Firs 94.5 0.053 1.2E-06 26.6 2.6 25 89-113 1-25 (92)
346 PF05790 C2-set: Immunoglobuli 94.2 0.3 6.4E-06 23.8 6.0 38 16-54 26-63 (80)
347 cd07689 Ig2_VCAM-1 Second immu 94.2 0.23 5E-06 25.2 4.4 32 85-116 11-45 (99)
348 cd00096 Ig Immunoglobulin doma 94.2 0.16 3.6E-06 22.5 3.9 25 92-116 1-25 (74)
349 PHA03052 Hypothetical protein; 94.2 0.21 4.6E-06 23.3 3.8 32 85-116 8-42 (69)
350 KOG1480|consensus 94.0 0.048 1E-06 37.3 2.2 56 3-58 145-207 (909)
351 cd07694 Ig2_CD4 Second immunog 94.0 0.16 3.5E-06 25.1 3.5 26 85-110 10-37 (88)
352 PF11465 Receptor_2B4: Natural 93.9 0.39 8.4E-06 24.7 4.8 29 32-60 69-97 (108)
353 cd05719 Ig2_PVR_like Second im 93.4 0.28 6E-06 24.6 3.9 22 90-111 16-38 (95)
354 cd07704 Ig2_Nectin-3-4_like Se 93.1 0.17 3.7E-06 25.6 2.9 27 85-111 12-40 (97)
355 PF07686 V-set: Immunoglobulin 93.0 0.2 4.4E-06 25.3 3.3 29 82-110 9-38 (114)
356 PHA02987 Ig domain OX-2-like p 93.0 0.25 5.4E-06 28.1 3.6 29 84-112 25-54 (189)
357 PHA03270 envelope glycoprotein 92.8 1.8 3.8E-05 28.1 9.8 104 2-113 234-359 (466)
358 cd05775 Ig_SLAM-CD84_like_N N- 92.2 0.14 3.1E-06 25.6 1.9 26 88-113 3-29 (97)
359 PHA02865 MHC-like TNF binding 92.1 1.2 2.7E-05 27.9 6.1 21 4-24 216-238 (338)
360 cd05721 IgV_CTLA-4 Immunoglobu 91.9 0.6 1.3E-05 24.5 4.0 30 82-111 6-38 (115)
361 cd05715 Ig_P0-like Immunoglobu 91.5 0.37 8E-06 24.9 3.1 28 83-110 7-38 (116)
362 PF06328 Lep_receptor_Ig: Ig-l 91.3 1 2.3E-05 22.4 5.6 55 1-55 17-83 (89)
363 PHA03271 envelope glycoprotein 91.3 2.8 6E-05 27.2 9.8 104 2-113 260-385 (490)
364 cd05716 Ig_pIgR Immunoglobulin 91.3 0.3 6.5E-06 24.3 2.5 27 86-112 4-31 (98)
365 cd05712 Ig_Siglec_N Immunoglob 89.9 0.7 1.5E-05 24.1 3.3 29 83-111 8-42 (119)
366 PF06328 Lep_receptor_Ig: Ig-l 89.3 1.4 3.1E-05 21.9 3.9 37 81-117 10-51 (89)
367 cd05880 Ig_EVA1 Immunoglobulin 89.2 0.84 1.8E-05 23.7 3.2 28 83-110 7-38 (115)
368 PHA03269 envelope glycoprotein 88.4 5.6 0.00012 26.5 9.3 104 2-113 342-469 (566)
369 PF11049 KSHV_K1: Glycoprotein 87.1 1.5 3.3E-05 20.4 2.9 44 6-55 2-45 (71)
370 PHA03273 envelope glycoprotein 86.4 7.4 0.00016 25.7 9.6 103 2-112 250-376 (486)
371 cd05890 Ig2_Nectin-1_like Seco 83.1 4.6 9.9E-05 20.5 4.8 51 6-56 24-86 (98)
372 PHA02914 Immunoglobulin-like d 79.1 15 0.00033 24.0 7.9 36 33-68 80-116 (500)
373 PF02124 Marek_A: Marek's dise 77.5 12 0.00026 22.1 8.6 90 17-114 7-116 (211)
374 PHA02865 MHC-like TNF binding 76.6 7.5 0.00016 24.6 4.0 21 91-111 216-238 (338)
375 KOG1026|consensus 75.1 12 0.00026 26.6 4.9 64 2-67 207-271 (774)
376 PF03921 ICAM_N: Intercellular 72.5 9.5 0.00021 19.2 3.2 29 80-108 9-37 (91)
377 PHA03240 envelope glycoprotein 69.2 7.2 0.00016 23.0 2.6 20 33-52 104-123 (258)
378 PF02440 Adeno_E3_CR1: Adenovi 64.4 13 0.00028 17.3 2.5 18 2-23 5-22 (63)
379 KOG0613|consensus 60.4 28 0.00061 26.3 4.6 110 3-112 350-477 (1205)
380 PHA03282 envelope glycoprotein 57.9 41 0.00089 22.7 4.6 24 33-56 123-146 (540)
381 PF09085 Adhes-Ig_like: Adhesi 56.8 26 0.00057 17.9 3.9 33 85-117 12-49 (110)
382 PHA03189 UL14 tegument protein 55.4 51 0.0011 20.9 6.7 18 40-57 139-156 (348)
383 PF01688 Herpes_gI: Alphaherpe 52.0 43 0.00093 19.0 5.3 25 33-57 123-147 (161)
384 PHA03112 IL-18 binding protein 51.8 40 0.00087 18.6 5.0 24 2-25 38-63 (141)
385 PF06832 BiPBP_C: Penicillin-B 48.8 33 0.00072 16.8 7.6 51 5-59 32-83 (89)
386 KOG4597|consensus 47.1 15 0.00033 24.6 1.6 28 83-110 205-232 (560)
387 KOG3265|consensus 46.9 30 0.00064 20.8 2.6 23 3-25 93-115 (250)
388 PHA03292 envelope glycoprotein 40.4 1.1E+02 0.0023 20.2 5.0 36 34-69 128-163 (413)
389 PF02480 Herpes_gE: Alphaherpe 38.0 62 0.0014 21.7 3.3 25 32-56 267-291 (439)
390 PHA03286 envelope glycoprotein 33.9 1.5E+02 0.0033 20.1 8.6 79 32-110 125-225 (492)
391 PHA03289 envelope glycoprotein 32.5 1.4E+02 0.003 19.2 5.2 26 33-58 121-146 (352)
392 KOG0613|consensus 31.9 2.5E+02 0.0054 22.0 6.6 29 86-114 346-375 (1205)
393 PRK14081 triple tyrosine motif 30.3 2.1E+02 0.0046 20.7 10.9 110 1-115 400-525 (667)
394 PHA03290 envelope glycoprotein 30.1 1.6E+02 0.0034 19.1 5.6 36 33-68 128-163 (357)
395 PHA03283 envelope glycoprotein 29.5 2E+02 0.0043 20.0 8.7 37 32-68 132-168 (542)
396 PF04668 Tsg: Twisted gastrula 29.3 28 0.00062 18.9 0.7 12 15-26 98-109 (132)
397 COG5475 Uncharacterized small 28.7 69 0.0015 14.5 2.7 13 46-58 28-40 (60)
398 PF00801 PKD: PKD domain; Int 28.2 69 0.0015 14.6 1.9 25 1-25 10-34 (69)
399 PHA03298 envelope glycoprotein 26.4 68 0.0015 17.4 1.8 15 101-115 93-107 (167)
400 KOG1026|consensus 25.5 79 0.0017 23.0 2.4 33 84-116 202-234 (774)
401 PF11327 DUF3129: Protein of u 25.5 1E+02 0.0022 17.9 2.5 22 35-56 94-115 (184)
402 PF11781 RRN7: RNA polymerase 24.3 45 0.00097 13.4 0.7 10 43-52 20-29 (36)
403 PF09739 MCM_bind: Mini-chromo 23.9 1.3E+02 0.0028 16.1 2.6 18 2-19 27-44 (123)
404 KOG0427|consensus 23.2 47 0.001 18.0 0.9 24 90-113 137-160 (161)
405 TIGR00864 PCC polycystin catio 22.9 5.3E+02 0.012 22.8 12.4 106 2-112 1800-1905(2740)
406 PF12988 DUF3872: Domain of un 22.4 90 0.0019 17.2 1.8 13 1-13 46-58 (137)
407 PHA03291 envelope glycoprotein 21.8 2.5E+02 0.0054 18.5 4.9 35 34-68 129-163 (401)
408 PF13220 DUF4028: Protein of u 21.3 92 0.002 13.9 1.4 16 44-59 8-23 (65)
409 PF01034 Syndecan: Syndecan do 21.0 23 0.0005 16.6 -0.5 15 36-50 31-45 (64)
No 1
>KOG3513|consensus
Probab=99.87 E-value=1.1e-20 Score=123.39 Aligned_cols=114 Identities=32% Similarity=0.565 Sum_probs=100.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCc-cCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGK-PVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 74 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~-~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~ 74 (119)
+|+.|.|.|.+.|.|.|.|.|+|.+. .+.. .....|.|.+++.+|+|.|.|.+.|..+...+.+.+.+. .+
T Consensus 255 ~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~---a~ 331 (1051)
T KOG3513|consen 255 KGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY---AP 331 (1051)
T ss_pred CCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe---cC
Confidence 48999999999999999999999776 3322 356789999999999999999999999888778887774 68
Q ss_pred CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|.....+.+..+..|+.+.+.|.+.|.|.|.+.|++||.++..
T Consensus 332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~ 374 (1051)
T KOG3513|consen 332 PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEP 374 (1051)
T ss_pred chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCc
Confidence 8888888888899999999999999999999999999988874
No 2
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=1.5e-17 Score=94.93 Aligned_cols=108 Identities=16% Similarity=0.336 Sum_probs=78.6
Q ss_pred CCccEEEEEEeccC-----------CCCeeEEeeCCccC--C----------------CCCCCeEEEecCCCCCCeEEEE
Q psy12725 1 MLALKFFTCKYEGN-----------PVKTISWMKDGKPV--P----------------DHNEPVFRIDSVRKEDKGMYQC 51 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-----------~~~~v~w~~~~~~~--~----------------~~~~~~l~~~~~~~~d~g~y~C 51 (119)
.|++|.|.|.+.+. ....+.|+|++... . ......|.|.+++..|+|.|.|
T Consensus 36 eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C 115 (227)
T PHA02826 36 FGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYIC 115 (227)
T ss_pred CCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEE
Confidence 48999999998653 34589999987541 0 0124689999999999999999
Q ss_pred EEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEccc
Q psy12725 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-----NPTPEISWYLDGKKLVN 117 (119)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~ 117 (119)
.+.+..+.....+.+.+. .++ ....+.+|+.+.|.|.+.+ .|.|.+.|+|+|.++..
T Consensus 116 ~a~N~~~~~~~~i~L~V~---~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~ 177 (227)
T PHA02826 116 TISSGNICEESTIRLTFD---SGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY 177 (227)
T ss_pred EEEECCcceEEEEEEEEe---cCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence 999976555555555442 111 1234568999999998753 35689999999998763
No 3
>KOG4221|consensus
Probab=99.77 E-value=1e-17 Score=110.54 Aligned_cols=114 Identities=23% Similarity=0.531 Sum_probs=95.4
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 73 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~ 73 (119)
.|+.+.|.|.+.+.|.|+|.|.||+..+... ...+|.|.+++..|.|.|+|.+.|..........+.|. .
T Consensus 251 ~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---a 327 (1381)
T KOG4221|consen 251 EGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---A 327 (1381)
T ss_pred cCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---c
Confidence 3899999999999999999999999877543 34678899999999999999999965555556666664 4
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+|.+...+......++..+.|.|.+.+.|.|.+.|+|||..+..
T Consensus 328 ~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip 371 (1381)
T KOG4221|consen 328 PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP 371 (1381)
T ss_pred CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc
Confidence 67777777777777899999999999999999999999987654
No 4
>KOG3513|consensus
Probab=99.76 E-value=2.6e-17 Score=108.03 Aligned_cols=113 Identities=28% Similarity=0.556 Sum_probs=94.9
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC--------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF 72 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~ 72 (119)
+|+.+.|.|.+.|.|.|.|.|++|+.++.... ...|.|.+++..|+|.|.|.+.|..+....+..+.|..
T Consensus 345 ~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a-- 422 (1051)
T KOG3513|consen 345 TGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA-- 422 (1051)
T ss_pred CCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc--
Confidence 48899999999999999999999999886432 36899999999999999999999988877777777753
Q ss_pred CCCeeeecCCcc--ccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725 73 DPPVIKESFSDE--TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115 (119)
Q Consensus 73 ~~~~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~ 115 (119)
.+|.+...+... .+..|..+.+.|...+.|.|.+.|++++..+
T Consensus 423 ~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~ 467 (1051)
T KOG3513|consen 423 SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL 467 (1051)
T ss_pred cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence 456666655443 4668999999999999999999999987733
No 5
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.76 E-value=1.1e-17 Score=78.31 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=54.9
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.+.|||++..+.. .....|.|..+..+|.|.|+|.+.|..+.......+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 47999999999999999999998853 34568999999999999999999999887666666655
No 6
>KOG4194|consensus
Probab=99.75 E-value=1.2e-17 Score=104.45 Aligned_cols=111 Identities=28% Similarity=0.631 Sum_probs=93.0
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCcc-CCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKP-VPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR 71 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~-~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~ 71 (119)
|+.+.|.|.+.|.|.|.|.|-|+|.. ++.. ....+.|.+++.+|.|.|+|.+.+.+|.......++|.
T Consensus 627 g~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~-- 704 (873)
T KOG4194|consen 627 GQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL-- 704 (873)
T ss_pred ccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe--
Confidence 78899999999999999999998765 4432 34678899999999999999999998888777777775
Q ss_pred cCCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCEEc
Q psy12725 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKL 115 (119)
Q Consensus 72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~ 115 (119)
..|.+..+..+..+..|+.+.+.|.+.+.|+ |.+.|+|+++++
T Consensus 705 -e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 705 -ETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPI 748 (873)
T ss_pred -cCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCce
Confidence 3566666566667889999999999999987 899999987765
No 7
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.75 E-value=5.8e-17 Score=81.61 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR 71 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~ 71 (119)
.|+.+.|.|.+.|.|.+.+.|+|++..+... ..+.|.|..+..+|.|.|+|.+.|..+.......+.|...
T Consensus 14 ~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~ 93 (98)
T cd05762 14 AGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDK 93 (98)
T ss_pred CCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecC
Confidence 4899999999999999999999999877532 2467899999999999999999999998888888887643
No 8
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.74 E-value=3.4e-17 Score=78.57 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=56.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.|.|.|.+.|+|++..+... ....|.|.+++..|.|.|.|.+.|..+.......+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 4899999999999999999999998876432 346799999999999999999999987766555543
No 9
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.74 E-value=1e-16 Score=79.26 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=57.8
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.+.|.+.+.|++++..+.... .+.|.|.++..+|.|.|+|.+.|..+.....+.+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 7899999999999999999999987663211 14688889999999999999999998888777777
Q ss_pred Eee
Q psy12725 68 LGG 70 (119)
Q Consensus 68 v~~ 70 (119)
+..
T Consensus 81 V~~ 83 (88)
T cd05735 81 VQE 83 (88)
T ss_pred EeC
Confidence 754
No 10
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.74 E-value=8.9e-17 Score=77.49 Aligned_cols=67 Identities=24% Similarity=0.514 Sum_probs=55.8
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
|+.+.|.|.+.|.|.|.++|++++..+... ....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999876432 2467999999999999999999998877655555443
No 11
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.74 E-value=5.2e-17 Score=82.02 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=57.2
Q ss_pred CCccEEEEEEecc-CCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
+|+.+.|.|.+.+ .|.|.+.|+|++..+.... ...|.|..++.+|.|.|+|.+.|..+.....+.
T Consensus 17 ~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~ 96 (101)
T cd04975 17 LGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFE 96 (101)
T ss_pred CCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEE
Confidence 4899999999999 7899999999998875321 256899999999999999999999887666666
Q ss_pred EEEe
Q psy12725 66 LKLG 69 (119)
Q Consensus 66 ~~v~ 69 (119)
+.|.
T Consensus 97 L~V~ 100 (101)
T cd04975 97 LYVN 100 (101)
T ss_pred EEEE
Confidence 6553
No 12
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=1.3e-16 Score=78.90 Aligned_cols=68 Identities=26% Similarity=0.460 Sum_probs=57.5
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
.|+.+.|.|.+.|.|.|.+.|+|++..+... .+..|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus 15 ~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 15 KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred CCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 4899999999999999999999988766432 3457999999999999999999999887766666654
No 13
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=6.3e-17 Score=77.27 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=55.5
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.+.|.|.|.|+|++..+... ...+|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 789999999999999999999998765322 346899999999999999999999987776665554
No 14
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.73 E-value=6.9e-17 Score=81.65 Aligned_cols=69 Identities=22% Similarity=0.438 Sum_probs=57.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
+|+.+.|.|.+.|.|.|.+.|+|++..+.... .+.|.|..++.+|.|.|+|.+.|..+.......
T Consensus 17 ~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~ 96 (101)
T cd05859 17 LHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFA 96 (101)
T ss_pred cCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEE
Confidence 47889999999999999999999998875321 257999999999999999999999877666666
Q ss_pred EEEe
Q psy12725 66 LKLG 69 (119)
Q Consensus 66 ~~v~ 69 (119)
+.|.
T Consensus 97 l~V~ 100 (101)
T cd05859 97 LQIQ 100 (101)
T ss_pred EEEE
Confidence 6653
No 15
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.72 E-value=6.6e-16 Score=92.71 Aligned_cols=115 Identities=21% Similarity=0.373 Sum_probs=79.6
Q ss_pred CccEEEEEEe-----ccCCCCeeEEeeCCccCCC----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeE--e--eEEE
Q psy12725 2 LALKFFTCKY-----EGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS--G--ELKL 68 (119)
Q Consensus 2 g~~~~l~c~~-----~~~~~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~--~--~~~v 68 (119)
|..+.+.|.. .+.+.+.++|+++...... .....|.|.+++.+|.|.|+|.+.+..+..... . .+.+
T Consensus 136 g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V 215 (326)
T PHA02785 136 RSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEV 215 (326)
T ss_pred cCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEE
Confidence 6778899972 3457889999986532111 124679999999999999999999976543322 2 2333
Q ss_pred eeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEECCEEccc
Q psy12725 69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLDGKKLVN 117 (119)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~~~~ 117 (119)
.....+|.+. .+....+..|+.+.|.|.+.+.|.+ .+.|++||..+..
T Consensus 216 ~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 216 RDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred eccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 2222344433 2344456779999999999988764 7999999998753
No 16
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.71 E-value=2.1e-16 Score=76.12 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=56.0
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
|+.+.|.|.+.|.|.|.|+|+|+++.+... ....|.+..++..|.|.|.|.+.|..+.......+.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 789999999999999999999999876421 2357888999999999999999999877766665554
No 17
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.71 E-value=1.7e-16 Score=76.04 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=51.7
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC---------CC--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|.|.|.+.|.|.|.|.|+|++..+... .. .+|.|.++..+|.|.|.|.+.|..+.......+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 579999999999999999999877531 11 2699999999999999999999988766655544
No 18
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.70 E-value=4.8e-16 Score=76.53 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=56.1
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|..+..+|.|.|.|.+.|..+.....+.+.
T Consensus 9 ~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred cCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 4899999999999999999999999877532 125799999999999999999999988766555543
No 19
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.69 E-value=3.3e-16 Score=74.10 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=53.2
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.+.|||+++.+... ....|.|..+..+|.|.|+|.+.|..+.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999887542 2457999999999999999999999876665555554
No 20
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.69 E-value=6.1e-16 Score=74.57 Aligned_cols=67 Identities=24% Similarity=0.439 Sum_probs=55.9
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
|+.+.|.|.+.+.|.|.+.|++++..+... ....|.|..++.+|.|.|.|.+.|..+.......+.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999998766432 3478999999999999999999999877665555543
No 21
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.69 E-value=4e-16 Score=74.21 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=54.3
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
|.|.|.+.|.|.|.+.|+|++..+... ....|.|.++..+|+|.|+|.+.|..+.......+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 468999999999999999999887532 45789999999999999999999988776666666553
No 22
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=4.9e-16 Score=74.34 Aligned_cols=66 Identities=29% Similarity=0.453 Sum_probs=55.5
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++..|.|.|.|.+.|..+.......+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 788999999999999999999998776432 346799999999999999999999987766655554
No 23
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.68 E-value=1.3e-15 Score=76.38 Aligned_cols=69 Identities=28% Similarity=0.487 Sum_probs=58.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
.|+.+.|.|.+.|.|.+.+.|++++..+... ....|.|..++.+|.|.|.|.+.|..+.......+.|.
T Consensus 17 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 4899999999999999999999998776432 24579999999999999999999998877666666653
No 24
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=4e-16 Score=74.83 Aligned_cols=63 Identities=24% Similarity=0.469 Sum_probs=51.4
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCCC-------C----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDHN-------E----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------~----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|.|.|.+.|.|.|.+.|+|++..+.... . ..|.|..++.+|+|.|.|.+.|..+.......+.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 5799999999999999999988764321 1 1588999999999999999999987776655544
No 25
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.68 E-value=1.7e-15 Score=90.96 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=79.0
Q ss_pred CccEEEEEEe-----ccCCCCeeEEeeCCccC----CCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725 2 LALKFFTCKY-----EGNPVKTISWMKDGKPV----PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF 72 (119)
Q Consensus 2 g~~~~l~c~~-----~~~~~~~v~w~~~~~~~----~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~ 72 (119)
|+.+.|.|.+ .|.|.+.+.|+|++... ....+..+.+..+..+|+|.|+|.+.|..+....+..+.|...
T Consensus 41 ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~- 119 (326)
T PHA02785 41 NEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV- 119 (326)
T ss_pred CCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec-
Confidence 7899999987 57788899999987532 1223456888899999999999999998766556666666442
Q ss_pred CCCeeeecCCccccCCCCcEEEEeEE-----ccCCCCeEEEEECC
Q psy12725 73 DPPVIKESFSDETLNPGPNYYFKCIA-----SGNPTPEISWYLDG 112 (119)
Q Consensus 73 ~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~~~W~~~~ 112 (119)
.++.+...+....+.+|....+.|.. .+.|.+.+.|+++.
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~ 164 (326)
T PHA02785 120 SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR 164 (326)
T ss_pred CCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC
Confidence 22333222233345688899999962 35678899998865
No 26
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=1.6e-15 Score=75.04 Aligned_cols=68 Identities=26% Similarity=0.479 Sum_probs=56.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
.|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|.|.+.|..+.......+.|
T Consensus 15 ~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 4899999999999999999999987655332 4578999999999999999999999887666665554
No 27
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.68 E-value=1.1e-15 Score=73.87 Aligned_cols=65 Identities=29% Similarity=0.629 Sum_probs=52.3
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
|+|.|.+.|.|.|.+.|+|++..+... ....|.|..+..+|.|.|.|.+.|..+....+..+++.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 579999999999999999999877432 23579999999999999999999988765444444443
No 28
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.67 E-value=1.6e-15 Score=74.63 Aligned_cols=67 Identities=33% Similarity=0.560 Sum_probs=54.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.+.|.+.+.|+|++..+.... ...|.|..+..+|.|.|.|.+.|..+.......+.
T Consensus 8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 38899999999999999999999988764321 23588889999999999999999987766555543
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=1.5e-15 Score=72.22 Aligned_cols=64 Identities=33% Similarity=0.637 Sum_probs=52.0
Q ss_pred cEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 4 LKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 4 ~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.+.|.|.+.|.|.|.++|+|++..+... ....+.+..++.+|.|.|.|.+.|..+.......+.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 3789999999999999999998766432 234678889999999999999999987766555543
No 30
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=1.6e-15 Score=75.64 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=54.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.+.|.|.+.|+|++..+... ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus 15 ~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred CCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 3899999999999999999999998776432 123689999999999999999999887665555443
No 31
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.66 E-value=1.4e-15 Score=74.77 Aligned_cols=67 Identities=34% Similarity=0.640 Sum_probs=56.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.|.|.+.+.|++++..+... ....|.|..+..+|.|.|.|.+.|..+....+..+.
T Consensus 13 ~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 13 IGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred CCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 4899999999999999999999999877532 346899999999999999999999987665555443
No 32
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.66 E-value=4.2e-15 Score=74.49 Aligned_cols=68 Identities=29% Similarity=0.640 Sum_probs=53.5
Q ss_pred CCccEEEEEEeccCCC-CeeEEee-CCccCCC-C----------CCCeEEEecCCCCCCeEEEEEEEcCC-CCceeEeeE
Q psy12725 1 MLALKFFTCKYEGNPV-KTISWMK-DGKPVPD-H----------NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~-~~v~w~~-~~~~~~~-~----------~~~~l~~~~~~~~d~g~y~C~~~~~~-~~~~~~~~~ 66 (119)
+|+.+.|.|.+.|.|. +.+.|++ ++..+.. . ....|.|..++.+|.|.|+|.+.|.. +....+..+
T Consensus 14 ~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l 93 (96)
T cd05865 14 VGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNV 93 (96)
T ss_pred CCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEE
Confidence 4899999999999985 6999998 6665432 1 12579999999999999999999986 666666655
Q ss_pred EE
Q psy12725 67 KL 68 (119)
Q Consensus 67 ~v 68 (119)
.+
T Consensus 94 ~v 95 (96)
T cd05865 94 KI 95 (96)
T ss_pred EE
Confidence 44
No 33
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=2.8e-15 Score=71.29 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=52.6
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.+.|+|++..+.. .....|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999998876533 23568999999999999999999999887666555543
No 34
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.65 E-value=4e-15 Score=73.93 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=55.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus 14 ~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred CCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 4899999999999999999999998766332 124689999999999999999999987765555443
No 35
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=4.3e-15 Score=74.79 Aligned_cols=66 Identities=20% Similarity=0.414 Sum_probs=53.2
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.|.|.|.++|++++..+... ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus 17 g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 96 (97)
T cd05869 17 EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE 96 (97)
T ss_pred CCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence 789999999999999999999987654321 114688999999999999999999988766555443
No 36
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.64 E-value=4.3e-15 Score=71.38 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=51.2
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.|.|.+.|.|.|.+.|+|++..+.... ...|.|..++.+|.|.|.|.+.|..+.......+.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 5799999999999999999998775321 12589999999999999999999987766555543
No 37
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=7.7e-15 Score=72.09 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=55.1
Q ss_pred ccEEEEEEeccCCCC--eeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 3 ALKFFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 3 ~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.+.|.|.+.+.|.+ .+.|++++..+... ....|.|.+++..|.|.|+|.+.+..+.......+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 68999998776431 125789999999999999999999988877777777
Q ss_pred Ee
Q psy12725 68 LG 69 (119)
Q Consensus 68 v~ 69 (119)
|.
T Consensus 81 V~ 82 (85)
T cd05854 81 VR 82 (85)
T ss_pred EE
Confidence 64
No 38
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.64 E-value=3.1e-15 Score=73.05 Aligned_cols=66 Identities=26% Similarity=0.536 Sum_probs=53.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|..++.+|.|.|.|.+.|..+.......+
T Consensus 8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred CCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 4899999999999999999999998766432 23578999999999999999999987765444433
No 39
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.64 E-value=2.3e-15 Score=71.26 Aligned_cols=61 Identities=36% Similarity=0.573 Sum_probs=50.8
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
|.|.|.+.|.|.|.+.|+|++..+... ....|.|..++.+|.|.|.|.+.|..+....+..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 579999999999999999998766432 3568999999999999999999999877655444
No 40
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.64 E-value=6.4e-15 Score=69.60 Aligned_cols=62 Identities=21% Similarity=0.443 Sum_probs=48.8
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
|+.+.|.|.+.|.|.|.|.|+|++..+... ....|.|.++ .|.|.|+|.+.|..+.......
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 788999999999999999999998776432 2345777765 4789999999999876554443
No 41
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.64 E-value=3.3e-15 Score=72.31 Aligned_cols=61 Identities=28% Similarity=0.439 Sum_probs=50.7
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~ 62 (119)
|+.+.|.|.+.+.|.|.+.|++++..+... ....|.|.+++.+|.|.|.|.+.|..+....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 789999999999999999999987665432 1257999999999999999999998765443
No 42
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.64 E-value=6.3e-15 Score=70.68 Aligned_cols=64 Identities=25% Similarity=0.461 Sum_probs=52.4
Q ss_pred cEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 4 LKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 4 ~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.+.|.|.+.|.|.|.+.|+|++..+... ....|.|.++..+|.|.|.|.+.|..+.......+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 4789999999999999999998876322 235799999999999999999999987765555443
No 43
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.64 E-value=4.2e-15 Score=72.29 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=50.3
Q ss_pred EEEEeccCCCCeeEEeeCCccCCCCC----------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 7 l~c~~~~~~~~~v~w~~~~~~~~~~~----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.|.+.|.|.|.|+|+|++..+.... ...|.|..+...|.|.|+|.+.|..+.....+.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999999999998775321 23589999999999999999999988776666554
No 44
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=4.6e-15 Score=70.21 Aligned_cols=62 Identities=31% Similarity=0.607 Sum_probs=50.8
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
|.|.|.+.|.|.|.+.|+|++..+... ....|.|.+++.+|.|.|+|.+.|..+.......+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 579999999999999999987655332 35689999999999999999999988766555444
No 45
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=6.6e-15 Score=73.14 Aligned_cols=69 Identities=26% Similarity=0.410 Sum_probs=56.2
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCC--------C------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.+.|.+.+.|++++.... . .....|.|.+++.+|+|.|+|.+.|..+.......+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 7899999999999999999999875421 0 1245799999999999999999999988777677666
Q ss_pred Eee
Q psy12725 68 LGG 70 (119)
Q Consensus 68 v~~ 70 (119)
|..
T Consensus 81 V~~ 83 (90)
T cd05726 81 VTD 83 (90)
T ss_pred Eee
Confidence 653
No 46
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.63 E-value=7.7e-15 Score=72.89 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=52.4
Q ss_pred CccEEEEEEeccCCCCeeEEeeCC----ccCCC------------------CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDG----KPVPD------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~----~~~~~------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~ 59 (119)
|+.+.|.|.+.+.|.|.|+|+|++ ..+.. .....|.|.+++.+|+|.|.|.+.|..+.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999953 21110 01246889999999999999999999887
Q ss_pred ceeEeeEEE
Q psy12725 60 AQASGELKL 68 (119)
Q Consensus 60 ~~~~~~~~v 68 (119)
...+..+.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 666665554
No 47
>KOG4221|consensus
Probab=99.63 E-value=3.6e-14 Score=94.34 Aligned_cols=118 Identities=25% Similarity=0.554 Sum_probs=88.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcCCCCce-eEeeEEEeeec-
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRF- 72 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v~~~~- 72 (119)
+|+++.|.|.+.+.+.+.+.|.++..++.... ...|.|..+...|.|.|.|.+.+...... ....+++....
T Consensus 154 ~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~ 233 (1381)
T KOG4221|consen 154 YGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG 233 (1381)
T ss_pred cCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc
Confidence 48999999999998888999999988765443 46789999999999999999998754332 22334433100
Q ss_pred --CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725 73 --DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118 (119)
Q Consensus 73 --~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~ 118 (119)
....+...+....+.+|+.+.|.|.+.+.|.|.+.|.+||..+..+
T Consensus 234 ~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d 281 (1381)
T KOG4221|consen 234 ALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD 281 (1381)
T ss_pred cccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence 0112333444556789999999999999999999999999987643
No 48
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.63 E-value=7.7e-15 Score=70.75 Aligned_cols=61 Identities=20% Similarity=0.450 Sum_probs=49.8
Q ss_pred EEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 7 FTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 7 l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.|.+.|.|.|.++|||++..+.... ...|.|..+..+|.|.|+|.+.|..+.....+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67899999999999999998875321 13688999999999999999999988766555443
No 49
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=6.1e-15 Score=69.95 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=50.4
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.+.|+|++..+... .+.+|.|.++..+|+|.|+|.+.+..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 368999999999999999999876432 2458999999999999999999997544444444443
No 50
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.62 E-value=2e-14 Score=71.46 Aligned_cols=59 Identities=25% Similarity=0.473 Sum_probs=50.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
.|+.+.|.|.+.+. .+.+.|++++..+... ....|.|.+++.+|.|.|.|.+.|..+..
T Consensus 17 ~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 17 DNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred cCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 38999999999998 8999999998776432 34689999999999999999999998654
No 51
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=1.2e-14 Score=69.85 Aligned_cols=64 Identities=34% Similarity=0.643 Sum_probs=50.3
Q ss_pred EEEEEEeccCCCCeeEEeeCCccC-CC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~-~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.++|+|++... .. .....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 478999999999999999987532 11 13457899999999999999999998876655555543
No 52
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.62 E-value=1.7e-14 Score=70.92 Aligned_cols=67 Identities=21% Similarity=0.395 Sum_probs=53.9
Q ss_pred ccEEEEEEeccCCCC--eeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 3 ALKFFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 3 ~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.+.|.|.+.+.|.+ .+.|++++..+... ....|.|.+++..|+|.|.|.+.|..+.......+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999998876 67999998766421 245799999999999999999999887766666666
Q ss_pred Ee
Q psy12725 68 LG 69 (119)
Q Consensus 68 v~ 69 (119)
|.
T Consensus 81 V~ 82 (85)
T cd04970 81 VR 82 (85)
T ss_pred EE
Confidence 64
No 53
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.62 E-value=1.5e-14 Score=72.14 Aligned_cols=65 Identities=26% Similarity=0.551 Sum_probs=53.9
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
.|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.++..+|+|.|.|.+.|..+.......
T Consensus 17 ~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 17 EGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred CCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 4899999999999999999999998766432 1357899999999999999999998876655444
No 54
>KOG4194|consensus
Probab=99.61 E-value=1.3e-14 Score=91.21 Aligned_cols=111 Identities=31% Similarity=0.547 Sum_probs=89.2
Q ss_pred CCccEEEEEEeccC--CCCeeEEeeCCccCCCC----------------------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGN--PVKTISWMKDGKPVPDH----------------------NEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~----------------------~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
+|+.++|+|.+.+. ..-++.|.++++..+.. ...-|.+.+++..|+|.|.|++.|.
T Consensus 517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~ 596 (873)
T KOG4194|consen 517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH 596 (873)
T ss_pred hccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence 48899999999773 34589999877644220 1245889999999999999999998
Q ss_pred CCC-ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725 57 QES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 57 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
+|. +.....++|. ..|.+...|.+..+..|+-..|.|.+.|.|.|.+.|.|+|..
T Consensus 597 FGStysqk~KltV~---~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 597 FGSTYSQKAKLTVN---QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred cCcchhheeEEEee---ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 765 4445566664 478888889999999999999999999999999999998764
No 55
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.61 E-value=1.3e-14 Score=72.13 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=52.1
Q ss_pred CccEEEEEEeccCCCCeeEEeeC----CccCCCC------------------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKD----GKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~----~~~~~~~------------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~ 59 (119)
|+.+.|.|.+.+.|.|.+.|+++ +..+... ....|.|.+++.+|+|.|.|.+.|..+.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 2221110 1147999999999999999999999887
Q ss_pred ceeEeeEEE
Q psy12725 60 AQASGELKL 68 (119)
Q Consensus 60 ~~~~~~~~v 68 (119)
......+.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 666655544
No 56
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.61 E-value=9.8e-15 Score=72.93 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=53.5
Q ss_pred CCccEEEEEEecc-----CCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 1 MLALKFFTCKYEG-----NPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~-----~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
.|+.+.|.|.+.+ .|.+.|.|||++..+.. ..+..|.|..+..+|+|.|.|.+.|..+.....+.+
T Consensus 13 ~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L 92 (94)
T cd05756 13 EGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISL 92 (94)
T ss_pred cCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEE
Confidence 4899999999988 57889999999865421 124678999999999999999999987766555544
Q ss_pred E
Q psy12725 67 K 67 (119)
Q Consensus 67 ~ 67 (119)
.
T Consensus 93 ~ 93 (94)
T cd05756 93 T 93 (94)
T ss_pred E
Confidence 3
No 57
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=1.7e-14 Score=69.14 Aligned_cols=65 Identities=28% Similarity=0.519 Sum_probs=51.9
Q ss_pred CccEEEEEEeccCCCCeeEEee-CCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
|+.+.|.|.+.+.|.+.+.|++ ++..+... ....|.|..+..+|.|.|.|.+.|..+.......+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999999999997 55544321 34678999999999999999999998765544443
No 58
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.61 E-value=2.5e-14 Score=73.40 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=55.1
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCC-CCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
|..+.|.|.+.|.|.+.+.|++++..+.... ...|.|..+. .+|.|.|.|.+.|..+.....+.+
T Consensus 23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 5789999999999999999999988764211 2468888887 589999999999998887666666
Q ss_pred EEe
Q psy12725 67 KLG 69 (119)
Q Consensus 67 ~v~ 69 (119)
.+.
T Consensus 103 ~~~ 105 (109)
T cd05773 103 VST 105 (109)
T ss_pred Eec
Confidence 654
No 59
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.61 E-value=1e-14 Score=69.37 Aligned_cols=64 Identities=33% Similarity=0.613 Sum_probs=51.4
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.|.+.|++++..+.. .....|.|.+++.+|.|.|.|.+.|..+.....+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47899999999999999998876532 13468999999999999999999999876655554443
No 60
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.60 E-value=1.7e-14 Score=71.89 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
.|+.+.|.|.+.+.|.+.+.||+++..+.... ...|.|..++.+|+|.|.|.+.|..+.....+.+
T Consensus 15 eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 15 EGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 38999999999999999999999887653321 1368999999999999999999987766555444
No 61
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=2e-14 Score=72.52 Aligned_cols=66 Identities=29% Similarity=0.548 Sum_probs=51.7
Q ss_pred CCccEEEEEEeccCCCCeeEEeeC--CccCCC--------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD--------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~--------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~ 64 (119)
.|+.+.|.|.+.|.|.|.+.|++. +..+.. .....|.|.+++.+|.|.|.|.+.|..+....++
T Consensus 15 ~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred CCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 389999999999999999999994 332211 0135789999999999999999999987665554
Q ss_pred eE
Q psy12725 65 EL 66 (119)
Q Consensus 65 ~~ 66 (119)
.+
T Consensus 95 ~l 96 (98)
T cd05870 95 YL 96 (98)
T ss_pred EE
Confidence 44
No 62
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=3.3e-14 Score=71.44 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=53.5
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
.|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|.|.|.|.+.|..+....++.+
T Consensus 15 ~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred cCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 3889999999999999999999987544321 12478999999999999999999998876555544
Q ss_pred E
Q psy12725 67 K 67 (119)
Q Consensus 67 ~ 67 (119)
.
T Consensus 95 ~ 95 (96)
T cd05732 95 E 95 (96)
T ss_pred e
Confidence 3
No 63
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=2.8e-14 Score=69.73 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=55.3
Q ss_pred ccEEEEEEeccCC--CCeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 3 ALKFFTCKYEGNP--VKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 3 ~~~~l~c~~~~~~--~~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
+.+.|.|.+...+ .+.+.|++|++.+... ....|.|.+++.+|.|.|+|.+.+.......+..+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999997744 6789999999888531 234799999999999999999999988877777777
Q ss_pred Ee
Q psy12725 68 LG 69 (119)
Q Consensus 68 v~ 69 (119)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 75
No 64
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.8e-14 Score=70.23 Aligned_cols=66 Identities=26% Similarity=0.408 Sum_probs=51.4
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCc---cC--CC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGK---PV--PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~---~~--~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.+.|.|.+.+.|.|.+.|+|+.. .+ .. .....|.|..++.+|.|.|.|.+.|..+.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999632 11 10 1235789999999999999999999987665555443
No 65
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.59 E-value=4.9e-14 Score=68.37 Aligned_cols=63 Identities=24% Similarity=0.453 Sum_probs=50.6
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~ 64 (119)
.|+.+.|.|.+.+. .+.+.|+|++..+... ....|.|..+..+|+|.|.|.+.+..+......
T Consensus 8 ~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 8 PGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 48999999999885 5689999999877542 235689999999999999999998865544333
No 66
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.58 E-value=1.4e-14 Score=71.91 Aligned_cols=67 Identities=33% Similarity=0.615 Sum_probs=55.6
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus 14 ~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 14 EGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT 89 (90)
T ss_dssp TTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 4899999999999999999999998877542 346799999999999999999999876555555443
No 67
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.58 E-value=3.4e-14 Score=71.06 Aligned_cols=59 Identities=27% Similarity=0.535 Sum_probs=48.7
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCC-CCCCeEEEEEEEcCCCCc
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~ 60 (119)
|+.+.|.|.+.|.|.|.|+|+|++..+... ....|.|..+. ..|.|.|.|.+.|..+..
T Consensus 19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 678999999999999999999999877432 23567787774 699999999999987654
No 68
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.57 E-value=4.5e-14 Score=67.65 Aligned_cols=55 Identities=31% Similarity=0.617 Sum_probs=46.6
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~ 59 (119)
++|.|.+.|.|.|.+.|+|++..+.. .....|.|.+++.+|.|.|.|.+.|..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCc
Confidence 47999999999999999999876642 12457899999999999999999998765
No 69
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.56 E-value=1.4e-13 Score=66.30 Aligned_cols=64 Identities=30% Similarity=0.629 Sum_probs=52.6
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+.|.|.+.|.|.+.+.|+|++..+... ....|.|..+..+|.|.|.|.+.|..+.......+.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 468999999999999999998776432 2357899999999999999999999877766666655
No 70
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.55 E-value=1.7e-13 Score=68.52 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=48.5
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCC-------CCeEEEecCC-CCCCeEEEEEEEcCCCCce
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQ 61 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~ 61 (119)
|+.+.|.|.+.+.|.+.++|++++..+.... ...|.|..+. ..|.|.|.|.+.|..+...
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 5689999999999999999999998875321 3467776654 5899999999999887543
No 71
>KOG4222|consensus
Probab=99.54 E-value=3.3e-14 Score=94.04 Aligned_cols=111 Identities=31% Similarity=0.605 Sum_probs=96.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP 74 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~ 74 (119)
+|+.++|.|.+.|.|.+.+.|-+++..++.. ...++.|..++..|+|.|.|.+.+..+..+.+..++|. .+
T Consensus 239 ~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~---ap 315 (1281)
T KOG4222|consen 239 VGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ---AP 315 (1281)
T ss_pred cccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe---cC
Confidence 3778899999999999999999877666532 34778888999999999999999999888888888885 57
Q ss_pred CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
|.+...+.+..+..|..++|.|.+.+.|.|.+.|.+.|..
T Consensus 316 P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q 355 (1281)
T KOG4222|consen 316 PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQ 355 (1281)
T ss_pred cccccccCccccccCceEEeeeecCCCCCcceEEeccCcc
Confidence 8888888888888999999999999999999999987653
No 72
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.54 E-value=1.1e-13 Score=66.42 Aligned_cols=59 Identities=24% Similarity=0.545 Sum_probs=48.0
Q ss_pred EEEEEEecc-CCCCeeEEeeCCccCCCC------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725 5 KFFTCKYEG-NPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63 (119)
Q Consensus 5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~ 63 (119)
+.|.|.+.+ .|.+.+.|+|++..+... ....|.|..++.+|.|.|.|.+.|..+.....
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 368999999 899999999998776432 12468999999999999999999988765443
No 73
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.53 E-value=2e-13 Score=66.34 Aligned_cols=58 Identities=21% Similarity=0.459 Sum_probs=47.6
Q ss_pred CCccEEEEEEeccCCCC-eeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
.|+.+.|.|.+.|.|.| .|.|+|++..+.. ...+.|.+..+ .|.|.|.|.+.|..+..
T Consensus 12 ~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 12 ANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred CCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 38999999999999999 7999999988753 24567777665 57899999999987654
No 74
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.53 E-value=3.9e-13 Score=66.17 Aligned_cols=60 Identities=32% Similarity=0.622 Sum_probs=50.5
Q ss_pred CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
.|+.+.|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|.|.|.|.+.|..+..
T Consensus 10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence 48999999998 67889999999998776542 24679999999999999999999987654
No 75
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=2.9e-13 Score=67.28 Aligned_cols=65 Identities=28% Similarity=0.543 Sum_probs=49.9
Q ss_pred CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCc-eeEeeE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~~~~ 66 (119)
.|+.+.|.|.+.|.|. .+.|+++ +..+... ....|.|..+..+|.|.|.|.+.|..+.. .+.+.+
T Consensus 14 ~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 14 VGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred CCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4899999999999887 8999984 5444221 12379999999999999999999987654 334433
No 76
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.52 E-value=1.6e-13 Score=67.33 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=53.1
Q ss_pred CccEEEEEEeccC--CCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 2 LALKFFTCKYEGN--PVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 2 g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
|+.+.|.|.+.+. |.+.+.|++++..+... ....|.|.+++..|.|.|.|.+.+..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 77899998766543211 1257899999999999999999999877766666
Q ss_pred EEE
Q psy12725 66 LKL 68 (119)
Q Consensus 66 ~~v 68 (119)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 554
No 77
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.52 E-value=3.3e-13 Score=68.15 Aligned_cols=59 Identities=29% Similarity=0.551 Sum_probs=45.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEec-----CCCCCCeEEEEEEEcCCCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDS-----VRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~-----~~~~d~g~y~C~~~~~~~~ 59 (119)
.|+.+.|.|.+.+.|.+.+.|+|++..+... ....+.+.. ++.+|.|.|.|.+.|..+.
T Consensus 15 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred CCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 3899999999999999999999999876541 111222212 2678999999999999876
No 78
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=1.6e-13 Score=68.46 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=48.5
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCC-CCCCeEEEEEEEcCCCCc
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVR-KEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~ 60 (119)
|..+.|.|.+.|.|.|.++|+|++..+... ....|.|..+. .+|.|.|.|.+.|..+..
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 84 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKV 84 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence 457999999999999999999998876432 23578888775 689999999999987654
No 79
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.51 E-value=5.5e-13 Score=71.29 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=58.0
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEEC
Q psy12725 34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLD 111 (119)
Q Consensus 34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~ 111 (119)
++|.|.+++..|+|.|.|.+.+..+.....+.+.+. .+|.+...+.......|..+.|.|.+.+. |. ..+.|+++
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~---~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS---EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe---cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 368999999999999999998865555555555553 46777665544333478889999999987 43 37999998
Q ss_pred CEE
Q psy12725 112 GKK 114 (119)
Q Consensus 112 ~~~ 114 (119)
|..
T Consensus 78 g~~ 80 (139)
T cd05771 78 PPG 80 (139)
T ss_pred CCC
Confidence 753
No 80
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=4.6e-13 Score=67.16 Aligned_cols=59 Identities=36% Similarity=0.557 Sum_probs=47.7
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecC-----CCCCCeEEEEEEEcC-CCCc
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSV-----RKEDKGMYQCVIRNE-QESA 60 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~-----~~~d~g~y~C~~~~~-~~~~ 60 (119)
|+.+.|.|.+.+.|.+.+.|+|++..+... ....+.+..+ +..|.|.|.|.+.|. .+..
T Consensus 14 g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 889999999999999999999999877532 1344666555 578999999999998 7654
No 81
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.50 E-value=8.1e-13 Score=64.78 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=49.9
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCC-----------C--CCCeEEEecCCCCCCeEEEEEEEcCCC--CceeEeeE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPD-----------H--NEPVFRIDSVRKEDKGMYQCVIRNEQE--SAQASGEL 66 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----------~--~~~~l~~~~~~~~d~g~y~C~~~~~~~--~~~~~~~~ 66 (119)
|+.+.|.|.+.+.|.+.+.|+++++.... . ....|.|.+++..|.|.|.|.+.+... ....++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 78999999999988899999986642110 0 135799999999999999999998754 23334444
Q ss_pred EE
Q psy12725 67 KL 68 (119)
Q Consensus 67 ~v 68 (119)
+|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 43
No 82
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.50 E-value=2.5e-13 Score=65.56 Aligned_cols=54 Identities=22% Similarity=0.475 Sum_probs=45.8
Q ss_pred CCccEEEEEEeccCCC-CeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+.|+|+|.+.+.|. ..+.|+||+..+. .....|.+.++ .+|+|.|.|.+.+.
T Consensus 14 ~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 14 QGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCEEEEEeCCCCCCCccEEEEECCEEee-ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 4899999999988764 4699999999873 34668899999 99999999999875
No 83
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.49 E-value=4.3e-13 Score=64.69 Aligned_cols=56 Identities=29% Similarity=0.593 Sum_probs=44.1
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCC----CCCeEEEEEEEcCCCCc
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESA 60 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~----~d~g~y~C~~~~~~~~~ 60 (119)
+.|.|.+.|.|.|.|+|+|++..+... ....|.|..+.. .|+|.|.|.+.|..+..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 478999999999999999998875321 246677777764 37899999999987654
No 84
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.49 E-value=3.8e-13 Score=64.91 Aligned_cols=56 Identities=30% Similarity=0.602 Sum_probs=44.7
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCC----CCCeEEEEEEEcCCCCc
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESA 60 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~----~d~g~y~C~~~~~~~~~ 60 (119)
+.|.|.+.|.|.|.|+|+|++..+... ....|.|..+.. +|+|.|.|.+.|..+..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 479999999999999999998876421 246777777653 68999999999987653
No 85
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.49 E-value=5.5e-13 Score=66.46 Aligned_cols=57 Identities=32% Similarity=0.673 Sum_probs=45.5
Q ss_pred CCccEEEEEEeccCCCCeeEEee-CCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMK-DGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
+|+.+.|.|.+.|.| +.+.|++ ++..+... ....|.|.+++.+|.|.|.|.+.|..+
T Consensus 14 ~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 14 VGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred CCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 489999999999887 4899997 55443221 124799999999999999999999853
No 86
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.49 E-value=5e-13 Score=64.35 Aligned_cols=60 Identities=18% Similarity=0.494 Sum_probs=47.0
Q ss_pred EEEEEEecc-CCCCeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725 5 KFFTCKYEG-NPVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64 (119)
Q Consensus 5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~ 64 (119)
+.|.|.+.+ .|.+.+.||++++.+... ....|.|.++...|.|.|.|.+.|..+....+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 468999864 577899999998877432 125689999999999999999999876654443
No 87
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.48 E-value=1.2e-12 Score=65.96 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=51.3
Q ss_pred CCccEEEEEEeccCCCC-eeEEeeCCccCCCCC---------------CCeEEEecCCCCC-CeEEEEEEEcCCCCceeE
Q psy12725 1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQESAQAS 63 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~---------------~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~ 63 (119)
.|+.+.|.|.+.+.|.| .+.|++++..+.... .+.|.|..++.+| .|.|.|.+.|..+.....
T Consensus 15 ~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~ 94 (98)
T cd05758 15 LGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAI 94 (98)
T ss_pred CCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEE
Confidence 48999999999999988 699999987664321 1368899999855 899999999998776554
Q ss_pred ee
Q psy12725 64 GE 65 (119)
Q Consensus 64 ~~ 65 (119)
+.
T Consensus 95 ~~ 96 (98)
T cd05758 95 IS 96 (98)
T ss_pred EE
Confidence 43
No 88
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=6.6e-13 Score=64.40 Aligned_cols=56 Identities=29% Similarity=0.484 Sum_probs=44.6
Q ss_pred EEEEEEeccCCCCeeEEeeCCccC-C-------C------CCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPV-P-------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~-~-------~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
|+|.|.+.|.|.|.+.|++++... . . .....|.|..+..+|.|.|.|.+.|..+..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 579999999999999999964311 0 0 134679999999999999999999987654
No 89
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.46 E-value=1.4e-12 Score=64.06 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=51.3
Q ss_pred CCccEEEEEEecc-CCCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725 1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64 (119)
Q Consensus 1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~ 64 (119)
.|+.++|.|.+.+ .|.+.+.|++++..+.. .....|.|..++.+|+|.|.|.+.|..+......
T Consensus 15 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred CCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 4899999999875 57889999998765432 2356899999999999999999999876655443
No 90
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.45 E-value=1.8e-12 Score=63.56 Aligned_cols=65 Identities=31% Similarity=0.568 Sum_probs=51.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
.|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus 8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred CCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 4889999999998888999999998765421 1236788899999999999999998765444443
No 91
>KOG4222|consensus
Probab=99.45 E-value=4.2e-13 Score=88.97 Aligned_cols=112 Identities=29% Similarity=0.550 Sum_probs=91.5
Q ss_pred CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEEee
Q psy12725 1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGG 70 (119)
Q Consensus 1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~ 70 (119)
.|+.+.|.|.- .+.|.+.+.|.|++..+... ....|.|.+++..|+|.|.|++.|..+..+. ...++++
T Consensus 145 ~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~- 223 (1281)
T KOG4222|consen 145 VGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ- 223 (1281)
T ss_pred ccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec-
Confidence 37889999986 45688999999999887631 3567899999999999999999998776544 2455554
Q ss_pred ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725 71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115 (119)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~ 115 (119)
.+|.+...+....+..|..+.+.|.+.|.|.|.++|.+++-.+
T Consensus 224 --e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~ 266 (1281)
T KOG4222|consen 224 --EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL 266 (1281)
T ss_pred --cCCccccccccceeecccccccccccCCCCCCceeeeccCCCC
Confidence 4777888888888899999999999999999999999876544
No 92
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.45 E-value=1.6e-12 Score=64.70 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=46.8
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCC-CCCCeEEEEEEEcCCCC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQES 59 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~ 59 (119)
|+.+.|.|.+.+.|.+.++|+++++.+... ....|.|.++. ..|+|.|.|.+.|..+.
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 457999999999999999999999877321 23567787776 48999999999998764
No 93
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.45 E-value=1.5e-12 Score=62.79 Aligned_cols=56 Identities=32% Similarity=0.592 Sum_probs=43.4
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCC----CCCCeEEEEEEEcCCCCc
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVR----KEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~----~~d~g~y~C~~~~~~~~~ 60 (119)
+.|.|.+.|.|.|.|+|+|++..+.. .....|.|..+. ..|+|.|.|.+.|..+..
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46899999999999999999876521 134577887653 246899999999997654
No 94
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.44 E-value=2e-12 Score=64.27 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=51.6
Q ss_pred CCccEEEEEEeccC-----CCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 1 MLALKFFTCKYEGN-----PVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|..+.|.|...+. +.+.+.|||+++.+... ....|.|..+..+|+|.|+|.+.+..+.........
T Consensus 9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t 85 (92)
T cd05757 9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRT 85 (92)
T ss_pred eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEE
Confidence 37888999986432 46799999999887543 357899999999999999999998865544444333
No 95
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.42 E-value=3.5e-12 Score=63.81 Aligned_cols=56 Identities=20% Similarity=0.403 Sum_probs=45.4
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccC---------CC---------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPV---------PD---------HNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~---------~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
+|+.+.|.|.+.+.|.+.+.|++++..+ .. .....|.|.++..+|+|.|+|.+...
T Consensus 11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 11 VGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred cCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 4999999999999999999999876421 00 01358999999999999999998873
No 96
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.41 E-value=6e-12 Score=57.97 Aligned_cols=57 Identities=42% Similarity=0.773 Sum_probs=48.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
.|+.+.|.|.+.+.+.+.+.|++++..+.. .....|.|..++..|.|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 488999999988778889999998876652 245689999999999999999998764
No 97
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.41 E-value=3.3e-12 Score=62.44 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCccEEEEEEecc-CCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
.|+.++|.|.+.+ .+...+.|||++..+.. .....+.|..++.+|+|.|.|.+.+..+
T Consensus 13 ~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 13 EGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred CCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence 3899999999854 45668999999987654 2457899999999999999999998765
No 98
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.39 E-value=1e-11 Score=61.55 Aligned_cols=56 Identities=23% Similarity=0.462 Sum_probs=45.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
.|+.+.|.|...+ |.+.+.|++++..+... ....|.|..++.+|.|.|.|.+.+..
T Consensus 10 ~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 10 EGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred CCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCc
Confidence 4899999999976 77899999998765432 12468899999999999999998764
No 99
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.37 E-value=1.3e-11 Score=60.64 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=46.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+++.|.|.+.+ +.+.+.|++|+..+.... ...|.|.+++..|+|.|.|.+...
T Consensus 10 ~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 10 LGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 4899999999864 678999999998875431 357899999999999999999875
No 100
>PHA03376 BARF1; Provisional
Probab=99.36 E-value=4.1e-11 Score=65.64 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCccEEEEEEeccC---CCCeeEEeeCCc----cC----------------------CCCCCCeEEEecCCCCCCeEEEE
Q psy12725 1 MLALKFFTCKYEGN---PVKTISWMKDGK----PV----------------------PDHNEPVFRIDSVRKEDKGMYQC 51 (119)
Q Consensus 1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~----~~----------------------~~~~~~~l~~~~~~~~d~g~y~C 51 (119)
+|+.+.|+|..... +.-.|.|+|.+. -+ ....+.+|.|.+++.+|.|.|.|
T Consensus 25 VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C 104 (221)
T PHA03376 25 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 104 (221)
T ss_pred eCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEE
Confidence 58999999998622 344799999532 11 00134578999999999999999
Q ss_pred EEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
.+..........-.++.. .|.++.......-....+...+.|...+.|.|.++|.-+
T Consensus 105 ~fQkge~~~~k~ehLt~V---~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 105 RMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred EEEcCCCceeeeeeeeee---ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence 998654222222222221 122222222111122256678999988889999999854
No 101
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.32 E-value=1.5e-11 Score=57.16 Aligned_cols=52 Identities=35% Similarity=0.719 Sum_probs=42.1
Q ss_pred CccEEEEEEe-ccCCCCeeEEeeCCccCCCC-------CCC----eEEEecCCCCCCeEEEEEE
Q psy12725 2 LALKFFTCKY-EGNPVKTISWMKDGKPVPDH-------NEP----VFRIDSVRKEDKGMYQCVI 53 (119)
Q Consensus 2 g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-------~~~----~l~~~~~~~~d~g~y~C~~ 53 (119)
|+.++|.|.+ .+.+...+.|++++...... ... .|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8899999999 55678899999998766431 112 2999999999999999986
No 102
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.30 E-value=1.4e-11 Score=61.43 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccC-C-------------------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~-~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
+|+.|+|.|...+.+.+.+.||++++.. . ......|.|.+++.+|+|.|+|.+.
T Consensus 6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~ 85 (94)
T cd07690 6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVE 85 (94)
T ss_pred CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEEC
Confidence 4899999999988888999999654221 0 0112469999999999999999998
Q ss_pred cCCC
Q psy12725 55 NEQE 58 (119)
Q Consensus 55 ~~~~ 58 (119)
+...
T Consensus 86 ~~~~ 89 (94)
T cd07690 86 DKKE 89 (94)
T ss_pred Cccc
Confidence 8753
No 103
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.28 E-value=8.1e-11 Score=58.96 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=43.6
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCc--------c-CC---------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGK--------P-VP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--------~-~~---------~~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+.+.|.|.+.+.|.+.+.||+.+. . .. ......|.|.+++.+|+|.|.|.+...
T Consensus 11 eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 11 EGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred cCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 48999999999998999999986221 1 10 012357899999999999999999874
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.28 E-value=8.1e-11 Score=67.57 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=46.3
Q ss_pred CCccEEEEEEecc-----CCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEG-----NPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~-----~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+.+.|.|.+.+ .|.+.++|||+++.+... ....|.|.+++.+|+|.|+|.+...
T Consensus 143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 3889999999853 357899999999887532 3457999999999999999999875
No 105
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.27 E-value=8.3e-11 Score=59.04 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=46.5
Q ss_pred CCccEEEEEEe------------ccCCCCeeEEeeCCccCCC------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKY------------EGNPVKTISWMKDGKPVPD------------HNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~------------~~~~~~~v~w~~~~~~~~~------------~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+++.|.|.. ++ +...+.|||++..... ..+..|.|.++..+|+|.|+|++.|.
T Consensus 14 ~GE~v~l~C~~~~~~~~~~~~~~~~-~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~ 92 (104)
T cd05896 14 AGEPVRIKCALFYGYIRTNYSMAQS-AGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNS 92 (104)
T ss_pred CCCeEEEECCCcccccccccccccc-CCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCC
Confidence 38999999986 21 2347999998644322 12467899999999999999999998
Q ss_pred CCCceeEee
Q psy12725 57 QESAQASGE 65 (119)
Q Consensus 57 ~~~~~~~~~ 65 (119)
.......+.
T Consensus 93 t~C~~~~i~ 101 (104)
T cd05896 93 TYCMKVSMS 101 (104)
T ss_pred CcceEEEEE
Confidence 644443443
No 106
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.26 E-value=1.4e-10 Score=57.08 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=49.6
Q ss_pred CccEEEEEEeccCC--CCeeEEeeCCccCCC----C-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725 2 LALKFFTCKYEGNP--VKTISWMKDGKPVPD----H-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64 (119)
Q Consensus 2 g~~~~l~c~~~~~~--~~~v~w~~~~~~~~~----~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~ 64 (119)
|+.+.|.|.+.+.+ ...+.|...+..... . ..+.|.|.+++..|.|.|.|.+.+..+....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998654 447799876542210 1 235799999999999999999999776555555
Q ss_pred eEEE
Q psy12725 65 ELKL 68 (119)
Q Consensus 65 ~~~v 68 (119)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 5554
No 107
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=3.9e-11 Score=59.81 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCccEEEEEEec-cCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
.|+.+.|.|... +.|.+.|.|++++..... .....|.|.+++..|.|.|.|.+.+...
T Consensus 17 eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 17 EGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred eCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 389999999874 568899999999764311 1357899999999999999999998753
No 108
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.25 E-value=5.5e-11 Score=57.53 Aligned_cols=56 Identities=30% Similarity=0.554 Sum_probs=46.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
.|+.+.|.|.+.+.|...+.|++++..+... ...+.+..+...|.|.|.|.+.+..
T Consensus 13 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 13 EGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-QNGLFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp TTSEEEEEEEEESSSSSEEEEEETTEEEEEE-SSEEEESSEEGGGTEEEEEEEEETT
T ss_pred CCCcEEEEEEEEcccceeeeeeeeeeeeeee-eeeeeeeeeccccCEEEEEEEEeCC
Confidence 4899999999998888899999998777532 2237778889999999999999864
No 109
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.25 E-value=1.9e-10 Score=55.52 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=44.2
Q ss_pred EEEEEEecc-CCCCeeEEeeCCccCCCCC-----C------CeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 5 KFFTCKYEG-NPVKTISWMKDGKPVPDHN-----E------PVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~~-----~------~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
++|+|...+ .|.+.|+||++++.+.... + +.|.+.....+|.+.|+|.+.|+....
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 789999864 4888999999998875421 1 357887788889999999999986543
No 110
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.24 E-value=2.7e-10 Score=57.08 Aligned_cols=57 Identities=21% Similarity=0.422 Sum_probs=43.5
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCcc---------CCC---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKP---------VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~---------~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
+|+.++|.|.+.+.+.+.+.|++.+.. ... .....|.|.+++.+|.|.|+|.+....
T Consensus 11 ~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 11 EGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 499999999998878889999852211 100 123578999999999999999998754
No 111
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.23 E-value=2.4e-10 Score=56.79 Aligned_cols=54 Identities=20% Similarity=0.484 Sum_probs=41.3
Q ss_pred CccEEEEEEeccCCCCeeEEeeCC--ccCC----C-----CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDG--KPVP----D-----HNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~--~~~~----~-----~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
|+.+.|.|.. +.|.+.+.||+.. .... . .....|.|..+..+|+|.|+|.+.+.
T Consensus 11 G~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 11 NNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred CCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEcc
Confidence 8899999996 4688899999832 1111 0 12357999999999999999999853
No 112
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.20 E-value=6.8e-10 Score=55.70 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=48.9
Q ss_pred CCccEEEEEEeccCCCC-eeEEeeCCccCCCC---------------CCCeEEEecCCCCC-CeEEEEEEEcCCCCceeE
Q psy12725 1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDH---------------NEPVFRIDSVRKED-KGMYQCVIRNEQESAQAS 63 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~---------------~~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~ 63 (119)
.|+.+.|.|.+.+.|.| .|.|..++..+... ..+.|.|.++...| .|.|.|.+.|..+.....
T Consensus 15 ~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~ 94 (98)
T cd05898 15 RGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAI 94 (98)
T ss_pred CCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEE
Confidence 48999999999888866 67887765544321 23578899987767 689999999998776554
Q ss_pred ee
Q psy12725 64 GE 65 (119)
Q Consensus 64 ~~ 65 (119)
+.
T Consensus 95 i~ 96 (98)
T cd05898 95 IQ 96 (98)
T ss_pred EE
Confidence 43
No 113
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.18 E-value=5.1e-10 Score=54.58 Aligned_cols=64 Identities=20% Similarity=0.450 Sum_probs=43.8
Q ss_pred cEEEEEEecc-CCCCeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 4 LKFFTCKYEG-NPVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 4 ~~~l~c~~~~-~~~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.+.|.|.+.+ .|.+.++|+++++.+... .+ +.|.+......|.+.|+|.+.+..........+.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 588899999999876431 11 2355555556678899999998764444433333
No 114
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.17 E-value=5.8e-10 Score=55.63 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=44.7
Q ss_pred CccEEEEEEe-c----cCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 2 LALKFFTCKY-E----GNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 2 g~~~~l~c~~-~----~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
|....|.|.. . ..+.+.+.|||++..+... ....|.|..+..+|.|.|+|++.+..+
T Consensus 10 ~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 10 STSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred ccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 6778899973 2 2356789999999887532 235799999999999999999998743
No 115
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.13 E-value=7.6e-10 Score=55.04 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=44.3
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+.|+|+|... .+...+.|+|++..... .....+.|.+++.+|.|.|.|...+.
T Consensus 15 ~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 15 LGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 489999999886 46678999999875432 23456899999999999999999875
No 116
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.11 E-value=2.3e-09 Score=53.53 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=43.6
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCC------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVP------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
+|+++.|.|.+.+.....+.|++.+..+. .....+|.|..++.+|+|.|.|.+...
T Consensus 11 ~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 11 EGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 49999999999987777788987553321 012346899999999999999999864
No 117
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.09 E-value=4e-09 Score=54.23 Aligned_cols=69 Identities=23% Similarity=0.451 Sum_probs=49.4
Q ss_pred CCccEEEEEEeccCC----------CCeeEEeeCC--ccC------------C--------C------CCCCeEEEecCC
Q psy12725 1 MLALKFFTCKYEGNP----------VKTISWMKDG--KPV------------P--------D------HNEPVFRIDSVR 42 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~----------~~~v~w~~~~--~~~------------~--------~------~~~~~l~~~~~~ 42 (119)
+|+.|+|.|.....+ ...+.|+|.. +.. . . ....+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 699999999996543 3579999841 111 0 0 123679999999
Q ss_pred CCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 43 KEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 43 ~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
.+|+|.|.|.+.......+..+.+.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999998865556556666654
No 118
>smart00409 IG Immunoglobulin.
Probab=99.09 E-value=2.4e-09 Score=52.01 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=48.1
Q ss_pred CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~ 61 (119)
.|+.+.|.|.+.+.+...+.|+++ +..+... ....|.+.++...|.|.|.|.+.+..+...
T Consensus 8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 489999999999877889999998 5544311 136789999999999999999997654433
No 119
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.09 E-value=2.4e-09 Score=52.01 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=48.1
Q ss_pred CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~ 61 (119)
.|+.+.|.|.+.+.+...+.|+++ +..+... ....|.+.++...|.|.|.|.+.+..+...
T Consensus 8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 489999999999877889999998 5544311 136789999999999999999997654433
No 120
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.07 E-value=5.3e-09 Score=52.44 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCccEEEEEEeccCCCCe-eEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725 1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~ 65 (119)
.|+.+.|.|.+..+|.|. +.|.+++..+... ..+.|.+..++.++.|.|+|.+.|+.......+.
T Consensus 17 ~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~ 96 (101)
T cd05860 17 AGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFN 96 (101)
T ss_pred CCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEE
Confidence 489999999999999997 9999876644221 1156888889999999999999998765555555
Q ss_pred EEE
Q psy12725 66 LKL 68 (119)
Q Consensus 66 ~~v 68 (119)
+.+
T Consensus 97 l~v 99 (101)
T cd05860 97 VYV 99 (101)
T ss_pred EEE
Confidence 544
No 121
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.06 E-value=7.1e-09 Score=52.97 Aligned_cols=68 Identities=26% Similarity=0.458 Sum_probs=48.0
Q ss_pred CCccEEEEEEeccCC------CCeeEEeeCC---cc---C----C------------------CCCCCeEEEecCCCCCC
Q psy12725 1 MLALKFFTCKYEGNP------VKTISWMKDG---KP---V----P------------------DHNEPVFRIDSVRKEDK 46 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~------~~~v~w~~~~---~~---~----~------------------~~~~~~l~~~~~~~~d~ 46 (119)
.|+.|+|.|.....+ ...|.|++.. .. + . .....+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987542 5689999852 10 0 0 01346899999999999
Q ss_pred eEEEEEEEcCCCCceeEeeEEE
Q psy12725 47 GMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 47 g~y~C~~~~~~~~~~~~~~~~v 68 (119)
|.|.|.+.+........+.+.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V 102 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEV 102 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEE
Confidence 9999999986544444444444
No 122
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.05 E-value=4.6e-09 Score=54.40 Aligned_cols=67 Identities=16% Similarity=0.404 Sum_probs=46.1
Q ss_pred CCccEEEEEEeccC----CCCeeEE-e--------------eCCccCC-C---------------CCCCeEEEecCCCCC
Q psy12725 1 MLALKFFTCKYEGN----PVKTISW-M--------------KDGKPVP-D---------------HNEPVFRIDSVRKED 45 (119)
Q Consensus 1 ~g~~~~l~c~~~~~----~~~~v~w-~--------------~~~~~~~-~---------------~~~~~l~~~~~~~~d 45 (119)
.|+.+.|.|..... +...+.| | ++++... . ....++.|.+++..|
T Consensus 12 ~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD 91 (116)
T cd05879 12 VGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTD 91 (116)
T ss_pred cCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCccc
Confidence 48999999999663 2458999 2 2333221 0 123679999999999
Q ss_pred CeEEEEEEEcCCCCceeEeeEE
Q psy12725 46 KGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 46 ~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
.|.|+|.+.+..........+.
T Consensus 92 ~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 92 NGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred CEEEEEEEEcCCCcCCceeEEE
Confidence 9999999998754433334433
No 123
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.05 E-value=9.9e-09 Score=52.83 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=47.8
Q ss_pred CCccEEEEEEeccCC------------CCeeEEeeCCc--c---C-------------C----------CCCCCeEEEec
Q psy12725 1 MLALKFFTCKYEGNP------------VKTISWMKDGK--P---V-------------P----------DHNEPVFRIDS 40 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~------------~~~v~w~~~~~--~---~-------------~----------~~~~~~l~~~~ 40 (119)
+|+.|+|.|...... .+.|.|+|-.. . + . .....+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 599999999997532 45899997311 0 0 0 11457899999
Q ss_pred CCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 41 VRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 41 ~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
++.+|+|.|.|.+.+..........+.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999976544444444444
No 124
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.04 E-value=4.8e-09 Score=51.27 Aligned_cols=54 Identities=19% Similarity=0.371 Sum_probs=44.2
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|+.+.|.|...+ +...+.|+.++..+... ....|.|..++..|+|.|.|.+.-
T Consensus 10 ~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 10 PGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred cCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 4889999999986 46799999999877542 235578889999999999999763
No 125
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.03 E-value=1.7e-09 Score=53.88 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCccEEEEEE-eccCCCCeeEEeeCCccCCC-------CCCCeEEEecCCCCCCe-EEEEEEEcCC
Q psy12725 1 MLALKFFTCK-YEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQ 57 (119)
Q Consensus 1 ~g~~~~l~c~-~~~~~~~~v~w~~~~~~~~~-------~~~~~l~~~~~~~~d~g-~y~C~~~~~~ 57 (119)
.|+.+.|.|. ..+.|.+.|.|++++..... .....|.|.++...|.| .|.|.+.+..
T Consensus 17 eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 17 EGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 3899999998 58889999999976533211 23478999999999999 7999999875
No 126
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.02 E-value=5.7e-09 Score=52.75 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=42.9
Q ss_pred CccEEEEEEeccC---CCCeeEEeeCCc-----------cCC------C------------CCCCeEEEecCCCCCCeEE
Q psy12725 2 LALKFFTCKYEGN---PVKTISWMKDGK-----------PVP------D------------HNEPVFRIDSVRKEDKGMY 49 (119)
Q Consensus 2 g~~~~l~c~~~~~---~~~~v~w~~~~~-----------~~~------~------------~~~~~l~~~~~~~~d~g~y 49 (119)
|+.|+|.|..... ....+.|++... ... . ....+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998632 123688887431 100 0 0124699999999999999
Q ss_pred EEEEEcCCCCceeEeeE
Q psy12725 50 QCVIRNEQESAQASGEL 66 (119)
Q Consensus 50 ~C~~~~~~~~~~~~~~~ 66 (119)
.|.+.+........+.+
T Consensus 81 ~C~v~~~~~~~~~~i~l 97 (100)
T cd05713 81 TCFFQSDGFYEEATVEL 97 (100)
T ss_pred EEEEecCCcEEEEEEEE
Confidence 99999765443333333
No 127
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=1.4e-08 Score=51.82 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCccEEEEEEeccCC------CCeeEEeeCCcc-------C-C----------C----------CCCCeEEEecCCCCCC
Q psy12725 1 MLALKFFTCKYEGNP------VKTISWMKDGKP-------V-P----------D----------HNEPVFRIDSVRKEDK 46 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~------~~~v~w~~~~~~-------~-~----------~----------~~~~~l~~~~~~~~d~ 46 (119)
.|+.|+|.|.....+ ...|.|+|.... + . . ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 389999999986542 356999984310 0 0 0 0134789999999999
Q ss_pred eEEEEEEEcCCCCceeEeeEEEe
Q psy12725 47 GMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 47 g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
|.|.|.+.+..+.....+.+.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999998876555555555543
No 128
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.99 E-value=1.2e-08 Score=50.66 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCC------------------------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
|+.|+|.|.........+.|++....... ....+|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 88999999987656668999985422100 134689999999999999999998765
No 129
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.96 E-value=3.2e-08 Score=47.99 Aligned_cols=54 Identities=17% Similarity=0.385 Sum_probs=38.4
Q ss_pred EEEEEEeccC-CCCeeEEeeCCccCCCCC------------CCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 5 KFFTCKYEGN-PVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~~------------~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
+.|.|.+.|. |.+.|+||+++..+.... .+.|.+..-...|...|.|.+.|+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 6899999765 888999999987764421 13455544445556689999999763
No 130
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.91 E-value=4.1e-09 Score=52.09 Aligned_cols=43 Identities=33% Similarity=0.523 Sum_probs=36.5
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~ 43 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMP 43 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCC
Confidence 3566666777778899999999999999999999999987654
No 131
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.91 E-value=5.1e-09 Score=52.72 Aligned_cols=44 Identities=39% Similarity=0.678 Sum_probs=37.6
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence 35666666677788999999999999999999999999998764
No 132
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.90 E-value=4.6e-08 Score=49.18 Aligned_cols=66 Identities=23% Similarity=0.450 Sum_probs=44.8
Q ss_pred ccEEEEEEeccCC---CCeeEEeeCCcc---------------CCC------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725 3 ALKFFTCKYEGNP---VKTISWMKDGKP---------------VPD------------HNEPVFRIDSVRKEDKGMYQCV 52 (119)
Q Consensus 3 ~~~~l~c~~~~~~---~~~v~w~~~~~~---------------~~~------------~~~~~l~~~~~~~~d~g~y~C~ 52 (119)
+.|+|.|.....+ ...|.|+|.... ... ....+|.|.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999987653 347999984321 000 0246899999999999999999
Q ss_pred EEc-CCCCceeEeeEEE
Q psy12725 53 IRN-EQESAQASGELKL 68 (119)
Q Consensus 53 ~~~-~~~~~~~~~~~~v 68 (119)
+.. +.+.......+.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 864 4445544444443
No 133
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.89 E-value=6.8e-08 Score=48.57 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=43.5
Q ss_pred CccEEEEEEeccCCC-CeeEEeeCCcc----C----C-C------------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725 2 LALKFFTCKYEGNPV-KTISWMKDGKP----V----P-D------------------HNEPVFRIDSVRKEDKGMYQCVI 53 (119)
Q Consensus 2 g~~~~l~c~~~~~~~-~~v~w~~~~~~----~----~-~------------------~~~~~l~~~~~~~~d~g~y~C~~ 53 (119)
|+.|+|.|....... ..+.|+|.... + . . ....+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999764432 36999984211 0 0 0 12467999999999999999998
Q ss_pred Ec-CCCCceeEeeEE
Q psy12725 54 RN-EQESAQASGELK 67 (119)
Q Consensus 54 ~~-~~~~~~~~~~~~ 67 (119)
.. +.+.....+.++
T Consensus 81 ~~~p~g~~~~~~~L~ 95 (97)
T cd05846 81 NTFPDGSKSGTMCLT 95 (97)
T ss_pred EeCCCCCeeeEEEEE
Confidence 64 344433333333
No 134
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.88 E-value=1.5e-08 Score=51.92 Aligned_cols=57 Identities=12% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCcc--C-------------C----------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKP--V-------------P----------DHNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~--~-------------~----------~~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
.|+.|+|.|.+.+.+...+.||+.... . . ......|.|.+++.+|+|.|.|.+.+
T Consensus 12 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 91 (109)
T cd04983 12 EGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSE 91 (109)
T ss_pred CCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEec
Confidence 489999999998767778999984310 0 0 01235789999999999999999986
Q ss_pred CC
Q psy12725 56 EQ 57 (119)
Q Consensus 56 ~~ 57 (119)
..
T Consensus 92 ~~ 93 (109)
T cd04983 92 SG 93 (109)
T ss_pred CC
Confidence 53
No 135
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.87 E-value=4.8e-08 Score=49.73 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCccC---------CC----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGKPV---------PD----------------HNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~---------~~----------------~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|+.|.|.|.........+.|||..... .. ..+.+|.|.+++..|.|.|.|.+.+
T Consensus 12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~ 91 (105)
T cd05774 12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTIT 91 (105)
T ss_pred CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEe
Confidence 4899999987643344489999953211 00 1246899999999999999999988
Q ss_pred CC
Q psy12725 56 EQ 57 (119)
Q Consensus 56 ~~ 57 (119)
..
T Consensus 92 ~~ 93 (105)
T cd05774 92 TN 93 (105)
T ss_pred CC
Confidence 75
No 136
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.87 E-value=1.7e-08 Score=50.76 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=42.6
Q ss_pred CCccEEEEEEecc-CCCCeeEEeeCCccC----C----C----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEG-NPVKTISWMKDGKPV----P----D----------------HNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~----~----~----------------~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|++|+|.|.... .....+.|++..... . . ....+|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5999999998865 445689999743111 0 0 1236799999999999999999987
Q ss_pred CC
Q psy12725 56 EQ 57 (119)
Q Consensus 56 ~~ 57 (119)
..
T Consensus 83 ~~ 84 (97)
T cd05775 83 KN 84 (97)
T ss_pred CC
Confidence 65
No 137
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.83 E-value=1.4e-08 Score=51.16 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=35.8
Q ss_pred eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+..
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~ 43 (98)
T cd05762 2 QIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE 43 (98)
T ss_pred ceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC
Confidence 445556666788999999999999999999999999998864
No 138
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.83 E-value=1.6e-08 Score=50.39 Aligned_cols=44 Identities=27% Similarity=0.622 Sum_probs=37.8
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~ 46 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS 46 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC
Confidence 56666667677789999999999999999999999999987754
No 139
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.81 E-value=1.9e-07 Score=47.20 Aligned_cols=64 Identities=16% Similarity=0.378 Sum_probs=42.2
Q ss_pred ccEEEEEEeccCC---CCeeEEeeCCcc-----C---C--------C-------------CCCCeEEEecCCCCCCeEEE
Q psy12725 3 ALKFFTCKYEGNP---VKTISWMKDGKP-----V---P--------D-------------HNEPVFRIDSVRKEDKGMYQ 50 (119)
Q Consensus 3 ~~~~l~c~~~~~~---~~~v~w~~~~~~-----~---~--------~-------------~~~~~l~~~~~~~~d~g~y~ 50 (119)
..|+|.|.....+ ...|.|+|.... + . . ....+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999986543 447999983210 0 0 0 12457999999999999999
Q ss_pred EEEEc-CCCCceeEeeE
Q psy12725 51 CVIRN-EQESAQASGEL 66 (119)
Q Consensus 51 C~~~~-~~~~~~~~~~~ 66 (119)
|.+.+ +.+..+....+
T Consensus 81 C~v~~~p~g~~~~~~~L 97 (100)
T cd05888 81 CRVITFPAGNFEAELVL 97 (100)
T ss_pred EEEEeCCCCCeeeEEEE
Confidence 99886 44444333333
No 140
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.81 E-value=5.5e-08 Score=50.00 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCc--cCC--------------------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGK--PVP--------------------------DHNEPVFRIDSVRKEDKGMYQCV 52 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~~--------------------------~~~~~~l~~~~~~~~d~g~y~C~ 52 (119)
.|+.|+|.|.+.+ +...+.|||... .+. ......|.|.+++.+|+|.|.|.
T Consensus 12 ~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 90 (110)
T cd05899 12 RGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCA 90 (110)
T ss_pred CCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEE
Confidence 4899999999987 667899998421 110 01235789999999999999999
Q ss_pred EEcC
Q psy12725 53 IRNE 56 (119)
Q Consensus 53 ~~~~ 56 (119)
+...
T Consensus 91 ~~~~ 94 (110)
T cd05899 91 SSLG 94 (110)
T ss_pred eeCC
Confidence 8764
No 141
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.80 E-value=1.3e-07 Score=49.06 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=40.6
Q ss_pred CCccEEEEEEeccCC----CCeeEEeeC----Ccc--C----C-----C---------------CCCCeEEEecCCCCCC
Q psy12725 1 MLALKFFTCKYEGNP----VKTISWMKD----GKP--V----P-----D---------------HNEPVFRIDSVRKEDK 46 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~----~~~v~w~~~----~~~--~----~-----~---------------~~~~~l~~~~~~~~d~ 46 (119)
.|+.++|.|.....+ ...+.||+. +.. + . . ....+|.|.+++.+|+
T Consensus 12 ~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~ 91 (115)
T cd05880 12 NGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDN 91 (115)
T ss_pred cCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhC
Confidence 489999999986432 236999741 110 1 0 0 0235699999999999
Q ss_pred eEEEEEEEcCCC
Q psy12725 47 GMYQCVIRNEQE 58 (119)
Q Consensus 47 g~y~C~~~~~~~ 58 (119)
|.|.|.+.+...
T Consensus 92 G~Y~C~v~~~~~ 103 (115)
T cd05880 92 GTYTCQVKNPPD 103 (115)
T ss_pred EEEEEEEEeCCC
Confidence 999999997654
No 142
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.79 E-value=2e-08 Score=48.82 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=31.8
Q ss_pred CCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725 81 FSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV 116 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~ 116 (119)
+.+..+..|+.+.|.|.+.|.|.| .+.|+++|.++.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~ 41 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG 41 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC
Confidence 445567899999999999999999 799999999875
No 143
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.79 E-value=3.8e-09 Score=50.29 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=39.1
Q ss_pred EEEEEEeccCC-CCeeEEe------eCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 5 KFFTCKYEGNP-VKTISWM------KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 5 ~~l~c~~~~~~-~~~v~w~------~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+.|.|.+.+.+ .+.+.|+ .............|.+..+..+|.|.|.|++.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999998876 7899999 111111122457899999999999999999975
No 144
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.78 E-value=4.3e-07 Score=45.81 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCeEEEecCCCCCCeEEEEEEEc-CCCCceeEeeEE
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELK 67 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~-~~~~~~~~~~~~ 67 (119)
..+|.|.+++..|+|.|.|.+.+ +.+..+..+.+.
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~ 97 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT 97 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 37899999999999999999998 455444444444
No 145
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.77 E-value=1.9e-07 Score=48.49 Aligned_cols=58 Identities=17% Similarity=0.457 Sum_probs=40.5
Q ss_pred CCccEEEEEEeccCC----CCeeEEeeCCc------cC---------C--C--------------CCCCeEEEecCCCCC
Q psy12725 1 MLALKFFTCKYEGNP----VKTISWMKDGK------PV---------P--D--------------HNEPVFRIDSVRKED 45 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~------~~---------~--~--------------~~~~~l~~~~~~~~d 45 (119)
.|+.|+|.|...... ...+.|++... .+ . . ....+|.|.+++.+|
T Consensus 12 ~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 91 (116)
T cd05715 12 NGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTD 91 (116)
T ss_pred cCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCccc
Confidence 489999999986432 24699975211 00 0 0 012568999999999
Q ss_pred CeEEEEEEEcCCC
Q psy12725 46 KGMYQCVIRNEQE 58 (119)
Q Consensus 46 ~g~y~C~~~~~~~ 58 (119)
+|.|.|.+.+...
T Consensus 92 ~G~Y~C~v~~~~~ 104 (116)
T cd05715 92 NGTYTCDVKNPPD 104 (116)
T ss_pred CEEEEEEEEeCCC
Confidence 9999999997643
No 146
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.77 E-value=5.2e-07 Score=46.66 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=29.8
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
..+|.|.+++..|.|.|.|.+.+........+.+.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 4789999999999999999999876555555665553
No 147
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.76 E-value=3.7e-08 Score=50.11 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=43.0
Q ss_pred CCccEEEEEEeccC-CCCeeEEeeCCc--cC-------------CC-----------C--CCCeEEEecCCCCCCeEEEE
Q psy12725 1 MLALKFFTCKYEGN-PVKTISWMKDGK--PV-------------PD-----------H--NEPVFRIDSVRKEDKGMYQC 51 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~--~~-------------~~-----------~--~~~~l~~~~~~~~d~g~y~C 51 (119)
.|+.|+|.|.+... +...+.|++... .. .. . ...+|.|.+++.+|.|.|.|
T Consensus 5 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 84 (105)
T cd00099 5 EGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYC 84 (105)
T ss_pred CCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence 48999999999876 567899998432 00 00 0 23478999999999999999
Q ss_pred EEEcCC
Q psy12725 52 VIRNEQ 57 (119)
Q Consensus 52 ~~~~~~ 57 (119)
.+.+..
T Consensus 85 ~v~~~~ 90 (105)
T cd00099 85 AVSLSG 90 (105)
T ss_pred EEecCC
Confidence 998764
No 148
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.74 E-value=1.2e-07 Score=47.38 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=41.0
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
|+.|+|.|.... ....+.|||++..... .....+.|..++..|.|.|.|....
T Consensus 15 G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 15 GENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 899999998865 4557899998764321 1234678999999999999999764
No 149
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.72 E-value=3.5e-07 Score=46.97 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=47.4
Q ss_pred CCccEEEEEEeccCC-------CCeeEEeeCC-----ccC------C------C--------------CCCCeEEEecCC
Q psy12725 1 MLALKFFTCKYEGNP-------VKTISWMKDG-----KPV------P------D--------------HNEPVFRIDSVR 42 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~-------~~~v~w~~~~-----~~~------~------~--------------~~~~~l~~~~~~ 42 (119)
+|+.|+|.|...-.| .+.+.|.+-. +.. . . ....+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 589999999965322 3689998731 100 0 0 124689999999
Q ss_pred CCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 43 KEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 43 ~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
.+|.|.|.|.+..........+.+.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999865445555555553
No 150
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.71 E-value=1.3e-07 Score=47.58 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCccEEEEEEeccC--CCCeeEEeeCCc--cCC-----------C----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGN--PVKTISWMKDGK--PVP-----------D----------HNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~--~~~-----------~----------~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|+.|+|.|...+. ....+.||+... ... . .....|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 5 PGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 48999999998764 456799997321 110 0 0124689999999999999998875
No 151
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.70 E-value=9.1e-08 Score=47.85 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=27.1
Q ss_pred CCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 88 PGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~ 47 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDT 47 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECcc
Confidence 578999999999999999999999998853
No 152
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.69 E-value=6.5e-07 Score=43.64 Aligned_cols=66 Identities=12% Similarity=0.287 Sum_probs=46.9
Q ss_pred CccEEEEEEeccCCCC--eeEEeeCCcc-C--CCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVK--TISWMKDGKP-V--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~--~v~w~~~~~~-~--~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|+.++|.|.....+.| .|.|...+.. . ......+|.+..+...|+|.++|.+.+........+.+.
T Consensus 14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~ 84 (88)
T cd07694 14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK 84 (88)
T ss_pred CCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence 8999999999664444 8999864332 2 123667899999999999999999987533333333333
No 153
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.68 E-value=6.6e-07 Score=49.48 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=46.5
Q ss_pred CccEEEEEEec-cCCCCeeEEeeCCccCC----------------------CCCCCeEEEecCCCCCCeEEEEEEEcC-C
Q psy12725 2 LALKFFTCKYE-GNPVKTISWMKDGKPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE-Q 57 (119)
Q Consensus 2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~-~ 57 (119)
|+.|+|.|... +...+.+.|+|....+- ......+.|.+++.+|+|.|.|.+..- .
T Consensus 30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~ 109 (189)
T PHA02987 30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLS 109 (189)
T ss_pred CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCC
Confidence 78999999985 44577899998532110 013467899999999999999987643 3
Q ss_pred C-CceeEeeEEEe
Q psy12725 58 E-SAQASGELKLG 69 (119)
Q Consensus 58 ~-~~~~~~~~~v~ 69 (119)
+ .......+.+.
T Consensus 110 G~~~~gt~CLtVt 122 (189)
T PHA02987 110 KNNEKGVVCLNVT 122 (189)
T ss_pred CCCceeEEEEEEE
Confidence 3 33333444443
No 154
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.68 E-value=1.4e-07 Score=47.15 Aligned_cols=57 Identities=23% Similarity=0.461 Sum_probs=40.1
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
|+.+.|.|.+.+. | ...++|++++..+... .+ +.|.+......+.+.|.|++.+...
T Consensus 13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 7889999999987 5 4689999998766321 11 1233333333588999999998754
No 155
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.67 E-value=7.8e-07 Score=43.46 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=37.3
Q ss_pred EEEEEEeccC-CCCeeEEeeCCccCCCC--------CCCe------EEEecCCCCCCeEEEEEEEcCCC
Q psy12725 5 KFFTCKYEGN-PVKTISWMKDGKPVPDH--------NEPV------FRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~--------~~~~------l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
+.|.|.+.+. |.+.|+|+++++.+... .... +.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999875 88899999999876431 1112 23323334566789999998754
No 156
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.66 E-value=9.4e-08 Score=47.58 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=30.7
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~ 44 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL 44 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECcc
Confidence 34577899999999999999999999999988754
No 157
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.66 E-value=7.8e-08 Score=47.50 Aligned_cols=43 Identities=35% Similarity=0.785 Sum_probs=36.5
Q ss_pred CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~ 43 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS 43 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee
Confidence 3455556677788999999999999999999999999998875
No 158
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.66 E-value=1e-07 Score=47.74 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|....+.+|+.+.|.|.+.+.|.|.+.|+|+|..+..
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~ 42 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNL 42 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcc
Confidence 4444567899999999999999999999999998864
No 159
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.64 E-value=1.2e-07 Score=46.51 Aligned_cols=38 Identities=34% Similarity=0.713 Sum_probs=32.7
Q ss_pred cCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.|....+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~ 42 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS 42 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC
Confidence 34456678999999999999999999999999998764
No 160
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.64 E-value=5.3e-07 Score=43.91 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=36.4
Q ss_pred EEEEEEeccC-CCCeeEEeeCCccCCCC-------CCC------eEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725 5 KFFTCKYEGN-PVKTISWMKDGKPVPDH-------NEP------VFRIDSVRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~-------~~~------~l~~~~~~~~d~g~y~C~~~~~~~~ 59 (119)
+.|.|.+.+. |.+.+.|+++++.+... ... .+.+......+.+.|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999765 78899999998876431 111 1222222334556899999987543
No 161
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.63 E-value=1.5e-07 Score=45.43 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=32.3
Q ss_pred eeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725 77 IKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV 116 (119)
Q Consensus 77 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~ 116 (119)
+...|....+.+|+.++|.|.+.+.|.+ .+.|+|||..+.
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~ 43 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE 43 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee
Confidence 4445555678899999999999887754 799999999873
No 162
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.63 E-value=2e-07 Score=47.61 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=40.2
Q ss_pred CCccEEEEEEeccCC-CCeeEEeeCC--ccC----------CC-----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGNP-VKTISWMKDG--KPV----------PD-----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~-~~~v~w~~~~--~~~----------~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.|+.|+|.|.+.+.. ...+.|||.. ... .. .....|.|.+++.+|+|.|.|.+.+.
T Consensus 14 ~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 14 PGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 489999999987654 5679999732 110 00 01235899999999999999998653
No 163
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.63 E-value=1.2e-07 Score=44.69 Aligned_cols=29 Identities=31% Similarity=0.790 Sum_probs=25.9
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~ 29 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK 29 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC
Confidence 57899999999999999999999987753
No 164
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.63 E-value=1.9e-07 Score=48.41 Aligned_cols=55 Identities=22% Similarity=0.473 Sum_probs=40.9
Q ss_pred CCccEEEEEEecc--CCCCeeEEeeC--CccC-------------------CC-------C--CCCeEEEecCCCCCCeE
Q psy12725 1 MLALKFFTCKYEG--NPVKTISWMKD--GKPV-------------------PD-------H--NEPVFRIDSVRKEDKGM 48 (119)
Q Consensus 1 ~g~~~~l~c~~~~--~~~~~v~w~~~--~~~~-------------------~~-------~--~~~~l~~~~~~~~d~g~ 48 (119)
.|+.|+|.|.+.+ .+...+.|||. +... .. . ....|.|.+++.+|+|.
T Consensus 12 ~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~ 91 (116)
T cd04982 12 ESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSAT 91 (116)
T ss_pred CCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEE
Confidence 4899999999876 56778999983 2111 00 0 23468999999999999
Q ss_pred EEEEEEc
Q psy12725 49 YQCVIRN 55 (119)
Q Consensus 49 y~C~~~~ 55 (119)
|.|.+..
T Consensus 92 Y~C~~~~ 98 (116)
T cd04982 92 YYCAYWE 98 (116)
T ss_pred EEEEEec
Confidence 9999864
No 165
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.62 E-value=1.7e-06 Score=43.35 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=44.6
Q ss_pred ccEEEEEEeccC-CCCeeEEeeCCc----cC-------C----------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 3 ALKFFTCKYEGN-PVKTISWMKDGK----PV-------P----------------DHNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 3 ~~~~l~c~~~~~-~~~~v~w~~~~~----~~-------~----------------~~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
+.|+|.|..... ....|.|.|... .+ . .....+|.|.+++..|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998743 345899977321 11 0 0124689999999999999999975
Q ss_pred -cCCCCceeEeeEEE
Q psy12725 55 -NEQESAQASGELKL 68 (119)
Q Consensus 55 -~~~~~~~~~~~~~v 68 (119)
.+.|....+..+.+
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 45566555555543
No 166
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.61 E-value=1.1e-07 Score=45.43 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=27.0
Q ss_pred CCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 88 PGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~ 30 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV 30 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC
Confidence 588999999999999999999999987753
No 167
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.61 E-value=2.3e-07 Score=46.40 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=25.6
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~ 46 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIK 46 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECc
Confidence 5689999999999999999999999875
No 168
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.60 E-value=1.6e-07 Score=46.99 Aligned_cols=33 Identities=33% Similarity=0.664 Sum_probs=29.7
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~ 46 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIES 46 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEECcC
Confidence 567899999999999999999999999988754
No 169
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.59 E-value=6.5e-07 Score=43.72 Aligned_cols=54 Identities=28% Similarity=0.516 Sum_probs=36.9
Q ss_pred EEEEEEeccC-CCCeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 5 KFFTCKYEGN-PVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
++|.|.+.+. |...++|+|+++.+... .. +.+.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 6899999874 77899999999876431 11 2334433334556789999988753
No 170
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.59 E-value=1.7e-07 Score=47.12 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=32.4
Q ss_pred CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
|.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~ 44 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNIS 44 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcccc
Confidence 555554444445568999999999999999999999887654
No 171
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.59 E-value=2.1e-07 Score=46.15 Aligned_cols=34 Identities=24% Similarity=0.670 Sum_probs=30.0
Q ss_pred cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
..+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~ 43 (90)
T cd04972 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ 43 (90)
T ss_pred EEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC
Confidence 3478999999999999999999999999987743
No 172
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.59 E-value=1.9e-06 Score=43.21 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=41.7
Q ss_pred ccEEEEEEeccC-CCCeeEEeeCCc----cC-----------CC------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 3 ALKFFTCKYEGN-PVKTISWMKDGK----PV-----------PD------------HNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 3 ~~~~l~c~~~~~-~~~~v~w~~~~~----~~-----------~~------------~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
+.++|.|..... ....|+|.|... .+ .. ....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468999998643 355788987421 01 00 124688999999999999999986
Q ss_pred c-CCCCceeEe
Q psy12725 55 N-EQESAQASG 64 (119)
Q Consensus 55 ~-~~~~~~~~~ 64 (119)
. +.+.....+
T Consensus 81 t~P~g~~~~~i 91 (96)
T cd05889 81 TYPQGSWEKVI 91 (96)
T ss_pred eCCCCCeEEEE
Confidence 4 444444333
No 173
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.59 E-value=3e-07 Score=47.16 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=42.1
Q ss_pred CCccEEEEEEec-cCCCCeeEEeeCCc-----cCC----C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725 1 MLALKFFTCKYE-GNPVKTISWMKDGK-----PVP----D---------------------HNEPVFRIDSVRKEDKGMY 49 (119)
Q Consensus 1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~-----~~~----~---------------------~~~~~l~~~~~~~~d~g~y 49 (119)
+|+.|.|.|... ......+.|++... .+. . ....+|.|.+++..|+|.|
T Consensus 15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y 94 (114)
T PF07686_consen 15 EGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTY 94 (114)
T ss_dssp TTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEE
T ss_pred cCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEE
Confidence 589999999998 44566899998322 110 0 0124699999999999999
Q ss_pred EEEEEcC
Q psy12725 50 QCVIRNE 56 (119)
Q Consensus 50 ~C~~~~~ 56 (119)
.|.+...
T Consensus 95 ~C~v~~~ 101 (114)
T PF07686_consen 95 FCQVSTS 101 (114)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9999876
No 174
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.59 E-value=1.5e-07 Score=45.17 Aligned_cols=28 Identities=39% Similarity=0.799 Sum_probs=25.8
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIE 28 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEcc
Confidence 6788999999999999999999999875
No 175
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.58 E-value=1.7e-07 Score=44.92 Aligned_cols=29 Identities=31% Similarity=0.771 Sum_probs=26.2
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.|.|.|.+.|+++|.++..
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEG 29 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCC
Confidence 67899999999999999999999998764
No 176
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.58 E-value=6.8e-07 Score=45.05 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=39.4
Q ss_pred CCccEEEEEEeccC-CCCe--eEEeeCCccCCCCC-----------CCeEEEecCCCCCC-eEEEEEEEcCCC
Q psy12725 1 MLALKFFTCKYEGN-PVKT--ISWMKDGKPVPDHN-----------EPVFRIDSVRKEDK-GMYQCVIRNEQE 58 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~~~--v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~-g~y~C~~~~~~~ 58 (119)
+|+.++|.|.+.+. |... |.|||++..+..+. ...+.+. +.++|. ..|+|.+.....
T Consensus 15 eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 15 VGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred CCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccC
Confidence 48999999999764 6555 79999887774421 2344544 445554 589999987643
No 177
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.56 E-value=1.6e-07 Score=47.54 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=30.5
Q ss_pred ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725 83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVN 117 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~ 117 (119)
...+..|+.+.|.|.+.+ .|+|.+.|+|||.++..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~ 47 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN 47 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC
Confidence 345778999999999999 78889999999998864
No 178
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.56 E-value=3.1e-07 Score=45.85 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+..+.|.|.+.|.|.|.+.|++++..+.
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~ 46 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDID 46 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEcc
Confidence 4579999999999999999999998774
No 179
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.55 E-value=2.5e-07 Score=45.62 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=31.8
Q ss_pred eeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 77 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 77 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~ 43 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP 43 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC
Confidence 3344455567789999999999999999999999876543
No 180
>KOG3515|consensus
Probab=98.54 E-value=1.4e-06 Score=57.42 Aligned_cols=114 Identities=14% Similarity=0.245 Sum_probs=78.3
Q ss_pred CCccEEEEEEeccCC-CCeeEEeeCCccCCC----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725 1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 75 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~ 75 (119)
.|+.|.|.|.+.+.| ...+.||+.++.+.. ..+..+.+....++..+.|.|.+.+..+ ......+...+ ..+|
T Consensus 21 ~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~-~~~~~~~~l~v-~~~p 98 (741)
T KOG3515|consen 21 LGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVG-MPSRCPMILDV-DYPP 98 (741)
T ss_pred cCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhccccc-Cceecceeecc-ccCc
Confidence 489999999998875 568999998765531 1345677777788888999999998732 22233333333 2355
Q ss_pred eeeecCCccccCCCCcEEEEeEEc--cCCCCeEEEEECCEEcc
Q psy12725 76 VIKESFSDETLNPGPNYYFKCIAS--GNPTPEISWYLDGKKLV 116 (119)
Q Consensus 76 ~~~~~~~~~~~~~g~~~~l~C~~~--~~p~~~~~W~~~~~~~~ 116 (119)
.-...........+..+.+.|.+. +.|.+.+.|..++....
T Consensus 99 a~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~ 141 (741)
T KOG3515|consen 99 ACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL 141 (741)
T ss_pred cccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence 444445555667788899999654 44666899998877543
No 181
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.53 E-value=2.9e-07 Score=45.02 Aligned_cols=33 Identities=33% Similarity=0.782 Sum_probs=29.5
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~ 37 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ 37 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC
Confidence 467899999999999999999999999988754
No 182
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.51 E-value=2.8e-07 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=29.7
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+..|+.+.|.|.+.|.|.|.+.|+|||.++..
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~ 46 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIE 46 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcC
Confidence 466788999999999999999999999999864
No 183
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.50 E-value=3.3e-07 Score=45.08 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=29.8
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~ 38 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTE 38 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECcc
Confidence 467899999999999999999999999998864
No 184
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.50 E-value=1.1e-06 Score=44.27 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=40.9
Q ss_pred CCccEEEEEEeccC-CCCeeEEeeCCccC------------CC------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGN-PVKTISWMKDGKPV------------PD------------HNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~------------~~------------~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
.|+.|+|.|..... ....+.|+|..... .. .....|.|.+++.+|+|.|.|.+..
T Consensus 6 ~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 85 (98)
T cd05716 6 LGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGD 85 (98)
T ss_pred eCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEccc
Confidence 48999999998653 45678999843110 00 0124689999999999999998876
Q ss_pred CC
Q psy12725 56 EQ 57 (119)
Q Consensus 56 ~~ 57 (119)
..
T Consensus 86 ~~ 87 (98)
T cd05716 86 DG 87 (98)
T ss_pred CC
Confidence 53
No 185
>KOG3515|consensus
Probab=98.50 E-value=7.8e-07 Score=58.56 Aligned_cols=116 Identities=18% Similarity=0.380 Sum_probs=73.2
Q ss_pred CccEEEEEEe--ccCCCCeeEEeeCCccCCC-----------------CCCCeEEEecCCCCCCeEEEEEEEcCCCC---
Q psy12725 2 LALKFFTCKY--EGNPVKTISWMKDGKPVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES--- 59 (119)
Q Consensus 2 g~~~~l~c~~--~~~~~~~v~w~~~~~~~~~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~--- 59 (119)
+..+.+.|.. .+.|.+.+.|+.++..... ...+.+.+...+..+.|.|+|.+.+....
T Consensus 112 ~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~ 191 (741)
T KOG3515|consen 112 KGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLS 191 (741)
T ss_pred CCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCcccc
Confidence 4567788855 3447789999987654321 12345677777889999999999985322
Q ss_pred ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 60 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~ 117 (119)
......+.+...+....+..........+|+.+.|.|.+ .+.|.+...|+++......
T Consensus 192 ~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 192 FAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred ccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 222233333221112222222222467899999999975 5668889999998776543
No 186
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.44 E-value=6.1e-07 Score=42.92 Aligned_cols=29 Identities=34% Similarity=0.733 Sum_probs=26.0
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~ 29 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEE 29 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCC
Confidence 67899999999999999999999988754
No 187
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.43 E-value=1.1e-06 Score=45.56 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCccEEEEEEeccC-CCCeeEEeeCC--ccC-----------CC------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 1 MLALKFFTCKYEGN-PVKTISWMKDG--KPV-----------PD------------HNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~~~v~w~~~~--~~~-----------~~------------~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
.|+.|+|.|..... ....+.|||.. ..+ .. .....|.|..++.+|.|.|.|.+.
T Consensus 13 ~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~ 92 (116)
T cd07706 13 VGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALS 92 (116)
T ss_pred CCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEE
Confidence 48999999998653 45679999731 110 00 112468999999999999999988
Q ss_pred cC
Q psy12725 55 NE 56 (119)
Q Consensus 55 ~~ 56 (119)
..
T Consensus 93 ~~ 94 (116)
T cd07706 93 TL 94 (116)
T ss_pred CC
Confidence 53
No 188
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.42 E-value=7.7e-07 Score=44.53 Aligned_cols=42 Identities=26% Similarity=0.511 Sum_probs=32.4
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+|.+.. +....+.+|+.+.|.|.+.+.|.|.+.|++++..+.
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~ 43 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFS 43 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccC
Confidence 345542 334567889999999999999999999999875543
No 189
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.42 E-value=4.9e-07 Score=42.31 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=22.8
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|+|||..+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECc
Confidence 4689999999999999999999885
No 190
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.41 E-value=1.8e-06 Score=43.99 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=39.0
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCCc----cC------CC---------------------CCCCeEEEecCCCCCCeEE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDGK----PV------PD---------------------HNEPVFRIDSVRKEDKGMY 49 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~~----~~------~~---------------------~~~~~l~~~~~~~~d~g~y 49 (119)
.|+.|+|.|.........+.|||... .+ .. .....|.|.+++.+|+|.|
T Consensus 5 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY 84 (104)
T cd05720 5 LGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYY 84 (104)
T ss_pred CCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEE
Confidence 48999999998655556799997321 11 00 0113589999999999999
Q ss_pred EEEEEc
Q psy12725 50 QCVIRN 55 (119)
Q Consensus 50 ~C~~~~ 55 (119)
.|.+..
T Consensus 85 ~Ca~~~ 90 (104)
T cd05720 85 FCSVAS 90 (104)
T ss_pred EEEEcc
Confidence 998763
No 191
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.38 E-value=2e-06 Score=44.06 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=38.3
Q ss_pred CCccEEEEEEeccC-CCCeeEEeeCCcc-----CC----------------C-C-----------CCCeEEEecCCCCCC
Q psy12725 1 MLALKFFTCKYEGN-PVKTISWMKDGKP-----VP----------------D-H-----------NEPVFRIDSVRKEDK 46 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~-----~~----------------~-~-----------~~~~l~~~~~~~~d~ 46 (119)
.|+.|+|.|...+. ....+.|||...- +. . . ....|.|.+++.+|+
T Consensus 5 ~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds 84 (107)
T cd07700 5 TNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDS 84 (107)
T ss_pred CCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHC
Confidence 48999999998653 3457999973211 00 0 0 012489999999999
Q ss_pred eEEEEEEEc
Q psy12725 47 GMYQCVIRN 55 (119)
Q Consensus 47 g~y~C~~~~ 55 (119)
|.|.|...+
T Consensus 85 g~YyCa~~~ 93 (107)
T cd07700 85 GTYFCMTVG 93 (107)
T ss_pred EEEEEeEcC
Confidence 999998753
No 192
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.37 E-value=2.8e-06 Score=39.23 Aligned_cols=53 Identities=40% Similarity=0.790 Sum_probs=40.5
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC-------------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~-------------~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
+.|.|.+.+.+...+.|++++..... .....+.+..++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998867789999997654321 123568888888899999999998764
No 193
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.37 E-value=9.9e-07 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.9
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|+|++..+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQ 25 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECc
Confidence 4789999999999999999999886
No 194
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.37 E-value=2e-06 Score=43.26 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=33.4
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN 117 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~ 117 (119)
||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+..
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~ 45 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELES 45 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccC
Confidence 444433 334457889999999999999998 6999999987754
No 195
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.37 E-value=1.5e-06 Score=43.28 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=30.2
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
...+.+|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~ 44 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL 44 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCC
Confidence 44578999999999999999999999999887653
No 196
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.36 E-value=1e-06 Score=41.96 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=25.4
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.+.|.|.+.|+|++..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~ 29 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN 29 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc
Confidence 57899999999999999999999987643
No 197
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.36 E-value=6e-06 Score=39.50 Aligned_cols=54 Identities=20% Similarity=0.519 Sum_probs=34.8
Q ss_pred cEEEEEEeccC-CC-CeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 4 LKFFTCKYEGN-PV-KTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 4 ~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
.++|.|.+.+. |. ..+.|+|+++.+... .. +.|.+......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999886 54 689999998853211 11 123333334456678999988764
No 198
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.34 E-value=1.8e-06 Score=42.28 Aligned_cols=36 Identities=33% Similarity=0.644 Sum_probs=30.1
Q ss_pred CccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725 82 SDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~ 117 (119)
....+.+|+.+.|.|.+ .+.|.|.+.|++++..+..
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~ 40 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL 40 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC
Confidence 34457789999999997 6889999999999987754
No 199
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.34 E-value=2.1e-06 Score=43.24 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=29.8
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
+|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRA 38 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence 345543 3456788999999999999999999999983
No 200
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.34 E-value=3.3e-06 Score=41.91 Aligned_cols=29 Identities=24% Similarity=0.662 Sum_probs=25.4
Q ss_pred CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 88 PGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
.+..+.|.|.+.+.|.|.+.|++++..+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~ 46 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEID 46 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECC
Confidence 34679999999999999999999999874
No 201
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.34 E-value=1.6e-06 Score=41.80 Aligned_cols=28 Identities=39% Similarity=0.795 Sum_probs=25.0
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~ 28 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP 28 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC
Confidence 6789999999999999999999987664
No 202
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.33 E-value=1.6e-06 Score=40.99 Aligned_cols=27 Identities=30% Similarity=0.865 Sum_probs=23.7
Q ss_pred cEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 91 NYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 91 ~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+.|.|.+.|.|.|.+.|++++..+..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~ 27 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIP 27 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCC
Confidence 368999999999999999999987754
No 203
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.33 E-value=3.7e-06 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.6
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
...+.+|+.+.|.|.+.+. .|.+.|++++..+..
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~ 45 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP 45 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC
Confidence 4467899999999999999 899999999987653
No 204
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.31 E-value=2.1e-06 Score=40.78 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=25.7
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~ 29 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTN 29 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEccc
Confidence 67899999999999999999999988753
No 205
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.31 E-value=6.5e-06 Score=42.94 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCccEEEEEEeccCC------CCeeEEeeCCc-----cC----C--------C-----------CCCCeEEEecCCCCCC
Q psy12725 1 MLALKFFTCKYEGNP------VKTISWMKDGK-----PV----P--------D-----------HNEPVFRIDSVRKEDK 46 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~------~~~v~w~~~~~-----~~----~--------~-----------~~~~~l~~~~~~~~d~ 46 (119)
.|+.|+|.|...... ...+.||+... .+ . . ....+|.|.+++.+|+
T Consensus 13 ~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Ds 92 (119)
T cd05712 13 EGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDS 92 (119)
T ss_pred ccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhC
Confidence 489999999875321 34589997421 10 0 0 1124689999999999
Q ss_pred eEEEEEEEcC
Q psy12725 47 GMYQCVIRNE 56 (119)
Q Consensus 47 g~y~C~~~~~ 56 (119)
|.|.|.+...
T Consensus 93 g~Y~C~~~~~ 102 (119)
T cd05712 93 GKYFFRVELG 102 (119)
T ss_pred eEEEEEEEcC
Confidence 9999988764
No 206
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.30 E-value=2.5e-05 Score=40.29 Aligned_cols=58 Identities=21% Similarity=0.458 Sum_probs=36.6
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC-------CCC-e------EEEecCCCCCCe-EEEEEEEcCCCCc
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH-------NEP-V------FRIDSVRKEDKG-MYQCVIRNEQESA 60 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~-------~~~-~------l~~~~~~~~d~g-~y~C~~~~~~~~~ 60 (119)
|+.++|.|.+.+. | ...++|+||++.+... ... + |.+. ....|.+ .|.|.+.+.....
T Consensus 21 g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 21 GQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred CCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence 6778999999886 5 4689999999876421 111 1 2221 2333333 4999998875333
No 207
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.29 E-value=2.2e-06 Score=41.41 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=28.1
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.++..
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~ 36 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE 36 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC
Confidence 3456789999999999886 568999999988764
No 208
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.28 E-value=1.9e-06 Score=41.28 Aligned_cols=26 Identities=31% Similarity=0.686 Sum_probs=23.1
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~ 26 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH 26 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC
Confidence 47899999999999999999988753
No 209
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.28 E-value=2.5e-06 Score=42.82 Aligned_cols=36 Identities=31% Similarity=0.709 Sum_probs=28.6
Q ss_pred CCccccCCCCcEEEEeEEccCCC-CeEEEEE-CCEEcc
Q psy12725 81 FSDETLNPGPNYYFKCIASGNPT-PEISWYL-DGKKLV 116 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~~~~~~ 116 (119)
+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~ 44 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT 44 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc
Confidence 33445788999999999999985 6999997 776543
No 210
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.28 E-value=1.6e-06 Score=41.70 Aligned_cols=25 Identities=32% Similarity=0.757 Sum_probs=22.3
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC
Confidence 4689999999999999999998864
No 211
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.28 E-value=1.8e-06 Score=41.49 Aligned_cols=26 Identities=31% Similarity=0.846 Sum_probs=23.1
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~ 26 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSD 26 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCC
Confidence 47899999999999999999998754
No 212
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.28 E-value=1.5e-06 Score=41.83 Aligned_cols=25 Identities=40% Similarity=0.816 Sum_probs=22.4
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|+|++..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~ 25 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC
Confidence 4689999999999999999998874
No 213
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.25 E-value=2.1e-06 Score=40.52 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=22.8
Q ss_pred EEEeEEccCCCCeEEEEECCEEccc
Q psy12725 93 YFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 93 ~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+.|.+.|.|.|.+.|+|||.++..
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~ 26 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVL 26 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCC
Confidence 6889999999999999999998864
No 214
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.24 E-value=6.6e-06 Score=37.89 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=34.7
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
|..|+|+|-... ..+.|++++..+.. .+..+...+-. ++.|.|.|.+.+.
T Consensus 7 GTtVtlTCP~~~---~~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 7 GTTVTVTCPLSG---DDIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred ccEEEEECCCCC---CCceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCCC
Confidence 789999996542 23899999876654 33344444444 8899999998644
No 215
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.23 E-value=3.9e-06 Score=43.11 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=26.2
Q ss_pred CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 88 PGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
.|..+.|.|.+.|.|.+.+.|+++|..+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~ 50 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLD 50 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECC
Confidence 46789999999999999999999998875
No 216
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.23 E-value=2.6e-06 Score=40.32 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=23.0
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|+|..+..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~ 26 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISE 26 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC
Confidence 46899999999999999999998864
No 217
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.23 E-value=3.2e-06 Score=40.44 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=23.2
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~ 26 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY 26 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC
Confidence 47899999999999999999998863
No 218
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.23 E-value=2.7e-06 Score=40.92 Aligned_cols=25 Identities=36% Similarity=0.765 Sum_probs=22.1
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|+|++..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~ 25 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFN 25 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEcc
Confidence 4689999999999999999998763
No 219
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.22 E-value=4.2e-06 Score=41.29 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=25.8
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
|+.+.|.|.+.|.|++.+.|++++..+..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~ 29 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP 29 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC
Confidence 67899999999999999999999987753
No 220
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.20 E-value=3.2e-06 Score=40.12 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.9
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|+|.++..
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~ 26 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE 26 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC
Confidence 36899999999999999999998764
No 221
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.19 E-value=3.4e-05 Score=38.47 Aligned_cols=56 Identities=23% Similarity=0.497 Sum_probs=36.6
Q ss_pred CccEEEEEEeccC-CC-CeeEEeeCCccCCC---------CCCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725 2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPD---------HNEPVF---RIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~---------~~~~~l---~~~~~~~~d~g~y~C~~~~~~ 57 (119)
|+.++|.|.+.|. |. ..+.|++++..... ..+... ....+...+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 5678999999996 54 38999999853211 111111 223344557789999998864
No 222
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.18 E-value=3.5e-06 Score=40.76 Aligned_cols=31 Identities=45% Similarity=0.880 Sum_probs=27.2
Q ss_pred cCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 86 LNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
...|+.+.|.|.+.+.|.|.+.|++++..+.
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~ 36 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLT 36 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCc
Confidence 4568999999999999999999999988664
No 223
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.18 E-value=4.4e-05 Score=38.18 Aligned_cols=56 Identities=18% Similarity=0.432 Sum_probs=36.1
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVF---RIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~l---~~~~~~~~d~g~y~C~~~~~~ 57 (119)
|+.++|.|.+.+. | ...++|+++++.+... .+.+. ....+...+...|.|++.+..
T Consensus 14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 6789999999986 5 3488999998875431 11111 111233445567899888864
No 224
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.15 E-value=6.5e-06 Score=39.16 Aligned_cols=27 Identities=37% Similarity=0.648 Sum_probs=23.6
Q ss_pred cEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 91 NYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 91 ~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~ 27 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL 27 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC
Confidence 368999999999999999999998743
No 225
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.15 E-value=1.1e-05 Score=42.04 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=38.0
Q ss_pred CCccEEEEEEeccCC--CCeeEEeeC--CccC-------------------CC-------C--CCCeEEEecCCCCCCeE
Q psy12725 1 MLALKFFTCKYEGNP--VKTISWMKD--GKPV-------------------PD-------H--NEPVFRIDSVRKEDKGM 48 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-------------------~~-------~--~~~~l~~~~~~~~d~g~ 48 (119)
.|+.|+|.|...+.. ...+.|||- ++.. .. . ....|.|.+++.+|+|.
T Consensus 11 ~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~ 90 (117)
T cd04981 11 PGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAV 90 (117)
T ss_pred CCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEE
Confidence 489999999875432 456899972 1111 00 0 01258999999999999
Q ss_pred EEEEEEc
Q psy12725 49 YQCVIRN 55 (119)
Q Consensus 49 y~C~~~~ 55 (119)
|.|....
T Consensus 91 YyCa~~~ 97 (117)
T cd04981 91 YYCARGL 97 (117)
T ss_pred EEEEEEc
Confidence 9998764
No 226
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.15 E-value=5.2e-05 Score=37.83 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=36.8
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~l---~~~~~~~~d~g~y~C~~~~~~ 57 (119)
|+..+|.|.+.+. | ...+.|.|||+.+... .+.+. ....+...+...|.|.+.+..
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 4567899999985 4 5589999999876421 11111 122344566678999998864
No 227
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.14 E-value=3.5e-06 Score=39.59 Aligned_cols=26 Identities=35% Similarity=0.816 Sum_probs=22.7
Q ss_pred EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|.|.|.+.|+|++..+..
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~ 26 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTE 26 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCC
Confidence 46899999999999999999987753
No 228
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.13 E-value=5.6e-06 Score=39.46 Aligned_cols=25 Identities=44% Similarity=0.777 Sum_probs=22.4
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
++|.|.+.|.|.|.+.|++++..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~ 25 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVD 25 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECc
Confidence 3689999999999999999998775
No 229
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.13 E-value=5.6e-06 Score=40.01 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=22.0
Q ss_pred EEEeEEccCCCCeEEEEECCEEccc
Q psy12725 93 YFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 93 ~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+.|.+.|.|.|.++|+|||..|..
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~ 26 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNE 26 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCC
Confidence 3678899999999999999999864
No 230
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.10 E-value=1e-05 Score=38.94 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=33.0
Q ss_pred cEEEEEEeccCCCC--eeEEeeCCc--cC------C---------C------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725 4 LKFFTCKYEGNPVK--TISWMKDGK--PV------P---------D------------HNEPVFRIDSVRKEDKGMYQCV 52 (119)
Q Consensus 4 ~~~l~c~~~~~~~~--~v~w~~~~~--~~------~---------~------------~~~~~l~~~~~~~~d~g~y~C~ 52 (119)
.|+|.|.+...... .+.|++... .. . . .....|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765443 789987431 10 0 0 0114578888899999999996
Q ss_pred E
Q psy12725 53 I 53 (119)
Q Consensus 53 ~ 53 (119)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 231
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.08 E-value=1.1e-05 Score=39.76 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=29.3
Q ss_pred CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725 81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~ 118 (119)
|....+..|+.+.|.|.+.+ +.+.+.|++||.++..+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~ 39 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE 39 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC
Confidence 33456778999999999754 56789999999988653
No 232
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.07 E-value=1.7e-05 Score=40.15 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=22.8
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP 29 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~ 29 (119)
++.++|.|.+.+. | ...+.|++|+..+.
T Consensus 17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 17 SGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred CCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 5678999999885 5 56899999998763
No 233
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.05 E-value=9.3e-06 Score=39.47 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=22.4
Q ss_pred EEEeEEccCCCCeEEEEECCEEcccC
Q psy12725 93 YFKCIASGNPTPEISWYLDGKKLVNA 118 (119)
Q Consensus 93 ~l~C~~~~~p~~~~~W~~~~~~~~~~ 118 (119)
.+.|.+.|.|.|.++|+|+|..+..+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~ 27 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNES 27 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCC
Confidence 36788999999999999999988653
No 234
>PHA02633 hypothetical protein; Provisional
Probab=98.05 E-value=3.6e-05 Score=34.96 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 28 VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 28 ~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
++.+....|.|.++..+|+|.|.|.+.+..-....++.++|
T Consensus 12 ip~~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V 52 (63)
T PHA02633 12 ILIDNCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI 52 (63)
T ss_pred ccccccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence 34446678899999999999999999987544444555555
No 235
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.05 E-value=8.2e-05 Score=39.86 Aligned_cols=57 Identities=12% Similarity=0.390 Sum_probs=35.7
Q ss_pred CccEEEEEEeccC-CC-CeeEEeeCCccCCC---------------CCC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPD---------------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~---------------~~~------~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
|+.+.|.|.+.+. |. ..|.|++++..... ..+ +.|.+......+...|.|.+.+...
T Consensus 53 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 53 EEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 6778999999985 54 58999998753110 111 2233332233345689999988643
No 236
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.04 E-value=6.1e-05 Score=35.04 Aligned_cols=48 Identities=23% Similarity=0.559 Sum_probs=35.4
Q ss_pred ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+.|.|.|... .+|.|++ |..+....+..+.+-.+.....|.|.|.+.+
T Consensus 7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 4688999652 4699999 4444333467777777778889999998866
No 237
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.04 E-value=4.8e-05 Score=37.48 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=37.5
Q ss_pred CccEEEEEEec-cCCCCeeEEeeCCccCCC---------CCC-----CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 2 LALKFFTCKYE-GNPVKTISWMKDGKPVPD---------HNE-----PVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~---------~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
|+.+.+.|.+. ++|.+.++|+.++..+.. ..+ +.|.+..-...+...+.|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 46899999764 568899999998866611 111 2344443334466789999998753
No 238
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.04 E-value=9.4e-05 Score=37.01 Aligned_cols=56 Identities=23% Similarity=0.526 Sum_probs=35.6
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVF---RIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~l---~~~~~~~~d~g~y~C~~~~~~ 57 (119)
|+.++|.|.+.|. | ...++|.+|+..+... ...+. ....+...+...|+|.+.+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 4567999999985 5 4589999999876431 11111 111223445567999988764
No 239
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.03 E-value=3e-05 Score=38.94 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=20.9
Q ss_pred CCccEEEEEEeccC--C-CCeeEEeeCCc
Q psy12725 1 MLALKFFTCKYEGN--P-VKTISWMKDGK 26 (119)
Q Consensus 1 ~g~~~~l~c~~~~~--~-~~~v~w~~~~~ 26 (119)
+|+.++|.|.+.+. | ...++|.|++.
T Consensus 13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred cCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 37889999999987 4 44789999863
No 240
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.03 E-value=2.2e-05 Score=39.11 Aligned_cols=36 Identities=42% Similarity=0.864 Sum_probs=28.5
Q ss_pred cCCccccCCCCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLV 116 (119)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~ 116 (119)
.+....+..|+.+.|.|.+.|.|. .+.|++ ++..+.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~ 42 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV 42 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec
Confidence 344456788999999999999887 899997 566554
No 241
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.02 E-value=7.4e-06 Score=38.71 Aligned_cols=25 Identities=40% Similarity=0.731 Sum_probs=21.6
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~ 25 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLS 25 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCC
Confidence 4689999999999999999987654
No 242
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.01 E-value=2.1e-05 Score=37.66 Aligned_cols=34 Identities=29% Similarity=0.820 Sum_probs=29.4
Q ss_pred cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~ 42 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS 42 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee
Confidence 3477899999999999888889999999988764
No 243
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.99 E-value=1.3e-05 Score=39.65 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=21.2
Q ss_pred CCcEEEEeEEccCCCCeEEEEEC
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
|+.+.|.|.+.+.|.|.++|+|+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 57899999999999999999985
No 244
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.98 E-value=6.9e-05 Score=37.48 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=34.6
Q ss_pred ccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
+.++|.|.+.+. | ...|+|++++..+... .+ +.|.+..-...+...|.|.+.+..
T Consensus 15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 458999999985 5 4689999998875221 11 122222112234567999998864
No 245
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.97 E-value=1.4e-05 Score=38.05 Aligned_cols=26 Identities=35% Similarity=0.758 Sum_probs=22.4
Q ss_pred EEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASG-NPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~-~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.+ .|.|.+.|++++..+..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~ 27 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNR 27 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccc
Confidence 368999998 89999999999987754
No 246
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.97 E-value=0.00011 Score=36.80 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=39.4
Q ss_pred cEEEEEEe-ccCCCCeeEEeeCCccC------CCCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 4 LKFFTCKY-EGNPVKTISWMKDGKPV------PDHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 4 ~~~l~c~~-~~~~~~~v~w~~~~~~~------~~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
...+.|.+ .++|.+.|+|+++.... ....+ +.|.+......+...|+|++.+..........+.+
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L 93 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTL 93 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEe
Confidence 34678998 56799999999972111 00111 23444433445566899999998655555555444
No 247
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.95 E-value=1.4e-05 Score=39.56 Aligned_cols=26 Identities=42% Similarity=0.929 Sum_probs=23.1
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
|+.+.|.|.+.+.|.|.+.|++++..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCc
Confidence 67899999999999999999998764
No 248
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.94 E-value=2e-05 Score=37.63 Aligned_cols=25 Identities=28% Similarity=0.786 Sum_probs=22.2
Q ss_pred EEEeEEccCCCCeEEEEECCEEccc
Q psy12725 93 YFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 93 ~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.|.|.+.|.|.|.+.|+|++..+..
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~ 26 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITP 26 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCC
Confidence 6899999999999999999988754
No 249
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.94 E-value=7.2e-05 Score=37.79 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=31.0
Q ss_pred eeecCCccccCCCCcEEEEeEEccC-CCCe--EEEEECCEEccc
Q psy12725 77 IKESFSDETLNPGPNYYFKCIASGN-PTPE--ISWYLDGKKLVN 117 (119)
Q Consensus 77 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~W~~~~~~~~~ 117 (119)
+.+.+....+.+|+.++|.|.+.+. |.+. +.||+++..+..
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~ 47 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR 47 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence 3444445567899999999998765 6664 799999988864
No 250
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.92 E-value=3.2e-05 Score=36.71 Aligned_cols=28 Identities=39% Similarity=0.859 Sum_probs=23.7
Q ss_pred CCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725 89 GPNYYFKCIASGNPTPEISWYL-DGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~-~~~~~~ 116 (119)
|+.+.|.|.+.+.|.|.+.|++ ++..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~ 29 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS 29 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence 6789999999999999999997 666654
No 251
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.92 E-value=9.5e-05 Score=37.04 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=40.0
Q ss_pred cEEEEEEec-cCCCCeeEEeeCCccCC------CCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 4 LKFFTCKYE-GNPVKTISWMKDGKPVP------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 4 ~~~l~c~~~-~~~~~~v~w~~~~~~~~------~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
.+.+.|.+. +.|.+.|+|+++..... ...+ +.|.+......|...|.|++.+........+.+++
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l 93 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL 93 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence 457899875 56889999998732110 0111 23444333445566899999998655555555554
No 252
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.91 E-value=0.00033 Score=44.10 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=56.4
Q ss_pred eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEEC
Q psy12725 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLD 111 (119)
Q Consensus 35 ~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~ 111 (119)
.|.|..++...+|.|+-...+..+.......++|.. +.+|.+.+.++ .+.+|+...-.|.+....++ .+.|+.|
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 488888999999999876655433323333444322 45777666544 57899999999998776444 7999999
Q ss_pred CEEcc
Q psy12725 112 GKKLV 116 (119)
Q Consensus 112 ~~~~~ 116 (119)
|.++.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 99887
No 253
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.90 E-value=4.6e-05 Score=37.00 Aligned_cols=31 Identities=45% Similarity=0.877 Sum_probs=27.3
Q ss_pred cCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 86 LNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~ 36 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFK 36 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECc
Confidence 4578999999999999989999999988765
No 254
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.90 E-value=3.8e-05 Score=37.98 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=21.0
Q ss_pred CCcEEEEeEEccCCCCeEEEEEC
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
|+.+.|.|.+.+.|.|.+.|+++
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEe
Confidence 67899999999999999999984
No 255
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.90 E-value=2.1e-05 Score=37.99 Aligned_cols=24 Identities=38% Similarity=0.801 Sum_probs=21.7
Q ss_pred CCcEEEEeEEccCCCCeEEEEECC
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDG 112 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~ 112 (119)
|+.+.|.|.+.+.|.|.+.|++++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecC
Confidence 678999999999999999999873
No 256
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.90 E-value=2.2e-05 Score=39.37 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=26.9
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
+..+..|+.+.|.|.+.+.|.|.+.|++++.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~ 36 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQ 36 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCc
Confidence 4467899999999999999999999998764
No 257
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.90 E-value=2.4e-05 Score=36.73 Aligned_cols=25 Identities=52% Similarity=0.918 Sum_probs=21.7
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~ 25 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP 25 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC
Confidence 4689999999999999999987654
No 258
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.89 E-value=4.4e-05 Score=37.43 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=22.9
Q ss_pred CcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725 90 PNYYFKCIASGNPTP--EISWYLDGKKLV 116 (119)
Q Consensus 90 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~ 116 (119)
+.+.|.|.+.|.|.| .+.|+++|..+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~ 29 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPID 29 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEcc
Confidence 368999999999877 589999998874
No 259
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.89 E-value=0.00011 Score=35.75 Aligned_cols=54 Identities=24% Similarity=0.484 Sum_probs=36.1
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
++.++|.|.+.+. | ...|.|++++..+... .+ +.+.+. ..+...|.|.+.+...
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 6789999999886 5 3479999998766431 11 123332 4455579998887653
No 260
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.88 E-value=0.0005 Score=43.02 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=57.6
Q ss_pred eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEEC
Q psy12725 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLD 111 (119)
Q Consensus 35 ~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~ 111 (119)
.|.|..++...+|.|+-...+..........++|.. +.+|.+.+.+. .+.+|+...-.|.+....++ .+.|+.|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM-FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 388999999999999998776554333233344332 46777766544 47789999999998776444 6999999
Q ss_pred CEEcc
Q psy12725 112 GKKLV 116 (119)
Q Consensus 112 ~~~~~ 116 (119)
+..+.
T Consensus 260 g~~V~ 264 (466)
T PHA03270 260 GDEVF 264 (466)
T ss_pred Ccccc
Confidence 99875
No 261
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.87 E-value=2.4e-05 Score=36.69 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.3
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.|.|.|.+.|++++..+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~ 25 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP 25 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC
Confidence 4789999999999999999876553
No 262
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.86 E-value=5.9e-05 Score=36.79 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=26.8
Q ss_pred ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEcc
Q psy12725 83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLV 116 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~ 116 (119)
...+.+|+.++|.|.+.+ .+.+.+.|+++|..+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~ 42 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK 42 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc
Confidence 335789999999999754 4556899999998663
No 263
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.86 E-value=4.7e-05 Score=36.86 Aligned_cols=26 Identities=27% Similarity=0.730 Sum_probs=21.7
Q ss_pred EEEEeEEc-cCCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIAS-GNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~-~~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|... +.|++.+.||++++.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCC
Confidence 68999864 568889999999999864
No 264
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.83 E-value=5.1e-05 Score=37.76 Aligned_cols=35 Identities=37% Similarity=0.803 Sum_probs=27.1
Q ss_pred CCccccCCCCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725 81 FSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLV 116 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~ 116 (119)
+....+..|+.+.|.|.+.|.| +.+.|++ ++..+.
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~ 42 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLV 42 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEec
Confidence 3445678899999999999986 4999997 565443
No 265
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.83 E-value=3.6e-05 Score=37.95 Aligned_cols=32 Identities=19% Similarity=0.510 Sum_probs=26.4
Q ss_pred cccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
..+.+|+.+.|.|.+.+ |.+.+.|++++..+.
T Consensus 6 ~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~ 37 (89)
T cd04979 6 VTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQ 37 (89)
T ss_pred EEEECCCcEEEEEeCCC-CCceEEEEECCcccc
Confidence 34678999999999876 778999999987654
No 266
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.82 E-value=6.6e-05 Score=36.69 Aligned_cols=27 Identities=26% Similarity=0.579 Sum_probs=22.9
Q ss_pred CcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725 90 PNYYFKCIASGNPTP--EISWYLDGKKLV 116 (119)
Q Consensus 90 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~ 116 (119)
+.+.|.|.+.+.|.| .+.|+++|..+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~ 29 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPID 29 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEee
Confidence 468999999999877 679999998875
No 267
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.81 E-value=2.6e-05 Score=37.16 Aligned_cols=23 Identities=43% Similarity=0.967 Sum_probs=20.1
Q ss_pred EEEEeEEccCCCCeEEEEECCEE
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
+.|.|.+.|.|.|.+.|++++..
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCc
Confidence 36899999999999999998763
No 268
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.78 E-value=2.1e-05 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=26.5
Q ss_pred cccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEc
Q psy12725 84 ETLNPGPNYYFKCIASG-----NPTPEISWYLDGKKL 115 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~ 115 (119)
..+.+|+.+.|.|.+.+ .|.+.+.|||++..+
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~ 45 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKT 45 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCC
Confidence 34668999999999888 678899999998653
No 269
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.77 E-value=8.4e-05 Score=33.52 Aligned_cols=29 Identities=41% Similarity=0.873 Sum_probs=24.5
Q ss_pred CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 88 PGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+|+.+.|.|.+.+.+.+.+.|++++..+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence 47889999998888888999999887654
No 270
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.76 E-value=0.00042 Score=34.82 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCccEEEEEEeccC-CC--CeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCe-EEEEEEEcC
Q psy12725 1 MLALKFFTCKYEGN-PV--KTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKG-MYQCVIRNE 56 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-~~--~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g-~y~C~~~~~ 56 (119)
+|+.+++.|.+.+. |. ..+.|++....+..+ ....+.+. .+++|.| .|+|.+.-.
T Consensus 14 ~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtft-ptreD~g~~fsC~A~L~ 85 (99)
T cd07689 14 EGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFT-PTIEDIGKVLVCRAKLH 85 (99)
T ss_pred CCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEe-cchhhCCcEEEEEEEEe
Confidence 48999999999754 43 579999866544321 11334443 3566655 899998743
No 271
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=0.00027 Score=35.93 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=21.7
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPV 28 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~ 28 (119)
|+.++|.|.+.|. | ...+.|++++..+
T Consensus 16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~ 44 (102)
T cd05768 16 QETATLTCLVKGFSPSDIFVKWLQNGQPL 44 (102)
T ss_pred CCceEEEEEEeeEeCCCCEEEEEECCEEC
Confidence 5689999999986 4 3478999998765
No 272
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.74 E-value=0.00014 Score=36.63 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=31.2
Q ss_pred CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN 117 (119)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~ 117 (119)
||.+ .......+..|+.+.|.|.+.+.|+| .+.|..++..+..
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~ 45 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLES 45 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccC
Confidence 4554 33344567899999999999888877 6788877665543
No 273
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.72 E-value=0.0013 Score=41.87 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=56.3
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCC-CceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEE
Q psy12725 34 PVFRIDSVRKEDKGMYQCVIRNEQE-SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWY 109 (119)
Q Consensus 34 ~~l~~~~~~~~d~g~y~C~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~ 109 (119)
..|.|..+...++|.|+-.+.+... .......+.|.. +.+|.+.+.+. .+.+|+...-.|.+....++ .+.|+
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf 365 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWT 365 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 5689999999999999877654321 222223333333 45676665543 57899999999998776443 79999
Q ss_pred ECCEEccc
Q psy12725 110 LDGKKLVN 117 (119)
Q Consensus 110 ~~~~~~~~ 117 (119)
.|+..+..
T Consensus 366 ~ng~~V~~ 373 (566)
T PHA03269 366 SNFGNIGK 373 (566)
T ss_pred eCCcccCc
Confidence 99888763
No 274
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.69 E-value=0.00024 Score=36.66 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=26.2
Q ss_pred ccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~ 117 (119)
....|+.++|.|.+.+..+ ..+.|++||..+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 3456788999999988743 38999999998753
No 275
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.69 E-value=0.00014 Score=35.27 Aligned_cols=26 Identities=42% Similarity=0.908 Sum_probs=21.6
Q ss_pred EEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASG-NPTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~-~p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.+ .|.+.+.|+++|..+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccC
Confidence 579999977 57789999999998753
No 276
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.67 E-value=0.00017 Score=35.24 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=26.3
Q ss_pred ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEc
Q psy12725 83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKL 115 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~ 115 (119)
...+.+|+.++|.|.+.+ .|.+.+.|++++..+
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~ 43 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL 43 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence 345778999999999864 577899999987543
No 277
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.64 E-value=0.0002 Score=34.83 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=21.7
Q ss_pred EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGN-PTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.|. |.+.|.|+++++.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~ 28 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTG 28 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcC
Confidence 6799997665 7779999999998864
No 278
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.63 E-value=0.00042 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=22.0
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCccCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP 29 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~ 29 (119)
+..++|.|.+.+. | ...++|.+||..+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 4568999999985 4 45789999988753
No 279
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.59 E-value=0.0007 Score=34.03 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=37.4
Q ss_pred CccEEE-EEEe-ccCCCCeeEEeeCCccCC------CCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 2 LALKFF-TCKY-EGNPVKTISWMKDGKPVP------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 2 g~~~~l-~c~~-~~~~~~~v~w~~~~~~~~------~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
|+.+.+ .|.. .+.|.+.|+|+.+..... ...+ +.+.+...+..|...++|++.+...........
T Consensus 16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~~ 93 (97)
T cd07704 16 GNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRITH 93 (97)
T ss_pred CcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCceeeE
Confidence 455666 7776 566889999997632211 1111 234443344456668999999875433333333
No 280
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.58 E-value=0.00022 Score=36.10 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=24.4
Q ss_pred cCCCCcEEEEeEEccCCC--CeEEEEECCEEcc
Q psy12725 86 LNPGPNYYFKCIASGNPT--PEISWYLDGKKLV 116 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~ 116 (119)
...++.++|.|.+.+..+ ..+.|++||..+.
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 335677999999988733 3799999999875
No 281
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.58 E-value=0.00014 Score=36.48 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=25.2
Q ss_pred CccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725 82 SDETLNPGPNYYFKCIASGNPTPEISWYL 110 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~ 110 (119)
....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~ 33 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSN 33 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeC
Confidence 34567899999999999999989999985
No 282
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.57 E-value=0.00063 Score=35.34 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.9
Q ss_pred CccEEEEEEeccC-CC-CeeEEeeCCccCC
Q psy12725 2 LALKFFTCKYEGN-PV-KTISWMKDGKPVP 29 (119)
Q Consensus 2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~ 29 (119)
++.++|.|.+.+. |. ..+.|++|+..+.
T Consensus 18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~ 47 (115)
T cd05769 18 KRKATLVCLATGFYPDHVSLSWKVNGKEVT 47 (115)
T ss_pred CCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence 3568999999886 54 4899999987653
No 283
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.56 E-value=0.0021 Score=40.30 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=52.7
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEE
Q psy12725 34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYL 110 (119)
Q Consensus 34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~ 110 (119)
..+.|.++...++|.|.-...+..........+.+.+.+.+|.+...+. .+..|+...-.|.+....++ .+.|+.
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4678888888999955333333322222222233333345676666544 47789999999998776444 699999
Q ss_pred CCEEccc
Q psy12725 111 DGKKLVN 117 (119)
Q Consensus 111 ~~~~~~~ 117 (119)
||.++..
T Consensus 285 nG~~V~~ 291 (490)
T PHA03271 285 NGNIATP 291 (490)
T ss_pred CCccccC
Confidence 9988753
No 284
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.53 E-value=0.00015 Score=35.30 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCcEEEEeEEccC--CCCeEEEEECCEEc
Q psy12725 89 GPNYYFKCIASGN--PTPEISWYLDGKKL 115 (119)
Q Consensus 89 g~~~~l~C~~~~~--p~~~~~W~~~~~~~ 115 (119)
|+.+.|.|.+.+. |.+.+.|++++..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 6789999999998 77899999876544
No 285
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.50 E-value=0.00036 Score=34.26 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=22.3
Q ss_pred CcEEEEeEEccC--CCCeEEEEECCEEcc
Q psy12725 90 PNYYFKCIASGN--PTPEISWYLDGKKLV 116 (119)
Q Consensus 90 ~~~~l~C~~~~~--p~~~~~W~~~~~~~~ 116 (119)
+++.|.|.+.+. +++.+.|++||+++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~ 29 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID 29 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence 368899998774 466899999999986
No 286
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.48 E-value=0.00019 Score=34.26 Aligned_cols=25 Identities=20% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEeEEcc-CCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASG-NPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~-~p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.+ .|.+.+.|+++|+.+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~ 26 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIG 26 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccc
Confidence 468999764 5778999999998875
No 287
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.48 E-value=0.00051 Score=34.92 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=24.5
Q ss_pred cCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725 86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLV 116 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~ 116 (119)
+..+..++|.|.+.|..+. .+.|++||..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 3456789999999997444 689999998865
No 288
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.46 E-value=0.00045 Score=33.57 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=21.2
Q ss_pred EEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGN-PTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~-p~~~~~W~~~~~~~~ 116 (119)
+.|.|.+.+. |.+.+.|++++..+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 6899998765 778999999998875
No 289
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.45 E-value=0.00015 Score=34.95 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.6
Q ss_pred EEEEeEEccCCCCeEEEEECC
Q psy12725 92 YYFKCIASGNPTPEISWYLDG 112 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~ 112 (119)
+.|.|.+.|.|.|.+.|++++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECC
Confidence 478999999999999999864
No 290
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.45 E-value=0.00088 Score=33.51 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=24.9
Q ss_pred CCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725 87 NPGPNYYFKCIASGNPTP--EISWYLDGKKLVN 117 (119)
Q Consensus 87 ~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~ 117 (119)
..+...+|.|.+.+..++ .+.|++||..+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 357889999999997433 7899999988654
No 291
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.44 E-value=0.0005 Score=33.56 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=21.4
Q ss_pred EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGN-PTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.+. |...+.|+++|..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 5799999775 6668999999998754
No 292
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.43 E-value=0.00036 Score=34.07 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=22.1
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCE
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
|+.+.|.|.+.+.|.+.+.|++.++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~ 25 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGK 25 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCc
Confidence 6889999999998889999998664
No 293
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.42 E-value=0.00052 Score=34.36 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.1
Q ss_pred cCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725 86 LNPGPNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
+..|+.++|.|...+.+.+.+.|+++++
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~ 31 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQ 31 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCc
Confidence 4679999999999888888999997763
No 294
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.41 E-value=0.00085 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725 88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLVN 117 (119)
Q Consensus 88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~ 117 (119)
.+...+|.|.+.|. |.. .+.|.+||..+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 35567999999997 433 7899999998754
No 295
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.40 E-value=0.00092 Score=33.31 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=21.5
Q ss_pred CCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725 89 GPNYYFKCIASGN-PTP-EISWYLDGKK 114 (119)
Q Consensus 89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~ 114 (119)
++.+.|.|.+.|. |.. .+.|+++|..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~ 41 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED 41 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence 6789999999997 443 8999999863
No 296
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.40 E-value=0.00062 Score=33.21 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=21.8
Q ss_pred EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725 92 YYFKCIASGN-PTPEISWYLDGKKLVN 117 (119)
Q Consensus 92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~ 117 (119)
+.|.|.+.+. |.+.+.|+++|..+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 5799998776 7779999999988754
No 297
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.39 E-value=0.00086 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.1
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCCcc
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDGKP 27 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~ 27 (119)
++.++|.|.+.+. | ...|+|.+++..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 3568999999986 4 457899999886
No 298
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.39 E-value=0.00051 Score=34.15 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=25.6
Q ss_pred CCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725 87 NPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN 117 (119)
Q Consensus 87 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~ 117 (119)
..|+.+.|.|.+.+. |. ..+.|+++|..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence 367899999999998 53 47999999988764
No 299
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.0011 Score=33.52 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=20.4
Q ss_pred CccEEEEEEeccC--C-CCeeEEeeCCcc
Q psy12725 2 LALKFFTCKYEGN--P-VKTISWMKDGKP 27 (119)
Q Consensus 2 g~~~~l~c~~~~~--~-~~~v~w~~~~~~ 27 (119)
++.++|.|.+.+. | ...|.|.+++..
T Consensus 19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 19 GSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 5678999999884 3 457999998754
No 300
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.37 E-value=0.0011 Score=33.15 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=23.7
Q ss_pred CCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725 87 NPGPNYYFKCIASGNPTP--EISWYLDGKKLV 116 (119)
Q Consensus 87 ~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~ 116 (119)
..|....|.|.+.|..++ .+.|++||..+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 346667899999997444 689999999865
No 301
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.31 E-value=0.00069 Score=31.00 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=22.7
Q ss_pred CCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725 89 GPNYYFKCIA-SGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 89 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~ 116 (119)
|+.+.|.|.+ .+.+.+.+.|++++..+.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~ 29 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLP 29 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTS
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCcccc
Confidence 6889999999 666777999999876443
No 302
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.26 E-value=0.0013 Score=33.10 Aligned_cols=32 Identities=6% Similarity=0.188 Sum_probs=24.6
Q ss_pred cCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725 86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN 117 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~ 117 (119)
+..+..++|.|.+.+..+. .+.|.+||..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 4445678999999997433 6899999998653
No 303
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.26 E-value=0.0011 Score=34.49 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=25.0
Q ss_pred cCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725 86 LNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN 117 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~ 117 (119)
+.+++.++|.|.+.+. |.. .+.|++||..+..
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~ 48 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD 48 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence 4456789999999987 443 7899999988753
No 304
>PHA02982 hypothetical protein; Provisional
Probab=97.23 E-value=0.0012 Score=37.54 Aligned_cols=57 Identities=12% Similarity=0.356 Sum_probs=41.1
Q ss_pred CCccEEEEEEeccCC-CCeeEEeeCCc-cCC----------C-----------------CCCCeEEEecCCCCCCeEEEE
Q psy12725 1 MLALKFFTCKYEGNP-VKTISWMKDGK-PVP----------D-----------------HNEPVFRIDSVRKEDKGMYQC 51 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~-~~~----------~-----------------~~~~~l~~~~~~~~d~g~y~C 51 (119)
+|+.|.|.|...... .....|+++.. -+. . .+.++|+|.++..+..|.|+|
T Consensus 38 vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc 117 (251)
T PHA02982 38 VDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFTC 117 (251)
T ss_pred CCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceEE
Confidence 488999999975433 34678976431 110 0 135789999999999999999
Q ss_pred EEEcCC
Q psy12725 52 VIRNEQ 57 (119)
Q Consensus 52 ~~~~~~ 57 (119)
++....
T Consensus 118 ~~ks~~ 123 (251)
T PHA02982 118 EAKDAE 123 (251)
T ss_pred EEecCC
Confidence 998754
No 305
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.16 E-value=0.0029 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=21.9
Q ss_pred CCCcEEEEeEEccCCC-C-eEEEEECCEE
Q psy12725 88 PGPNYYFKCIASGNPT-P-EISWYLDGKK 114 (119)
Q Consensus 88 ~g~~~~l~C~~~~~p~-~-~~~W~~~~~~ 114 (119)
.++.+.|.|.+.+..+ . .+.|++||..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 4567899999999743 3 7899999986
No 306
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.14 E-value=0.025 Score=35.65 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCccEEEEEEeccC---CCCeeEEeeCCccCCC--------------------------------CCCCeEEEecCCCCC
Q psy12725 1 MLALKFFTCKYEGN---PVKTISWMKDGKPVPD--------------------------------HNEPVFRIDSVRKED 45 (119)
Q Consensus 1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~~~~~--------------------------------~~~~~l~~~~~~~~d 45 (119)
+|.+|.+.|....- ......|+-.+-.+.+ -..++|+|.+++...
T Consensus 278 ~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N 357 (500)
T PHA02914 278 VGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINN 357 (500)
T ss_pred cCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEc
Confidence 48899999987542 3456789865433321 134789999999999
Q ss_pred CeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCC-cEEEEeEEccC--CCCeEEEEECCEEcc
Q psy12725 46 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASGN--PTPEISWYLDGKKLV 116 (119)
Q Consensus 46 ~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~--p~~~~~W~~~~~~~~ 116 (119)
.|.|.|++............+.+. .++... ...+|+ ...+.|-+... .++.+.|..+|....
T Consensus 358 ~GCY~~~a~~g~~~~ec~~Cl~V~-----d~V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 358 AGCYEAQAFMGKFKEECRHCFKVA-----DHVFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred CCceEEEEecCcchhhhhhheEec-----cEEEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 999999998764333333333331 111110 112333 34567865433 455799998876543
No 307
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.10 E-value=0.0053 Score=31.86 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=34.9
Q ss_pred CccEEEEEEeccCC--C-CeeEEeeCCc-cC-----------CC--------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725 2 LALKFFTCKYEGNP--V-KTISWMKDGK-PV-----------PD--------------HNEPVFRIDSVRKEDKGMYQCV 52 (119)
Q Consensus 2 g~~~~l~c~~~~~~--~-~~v~w~~~~~-~~-----------~~--------------~~~~~l~~~~~~~~d~g~y~C~ 52 (119)
|+.++|.|.+.+.. . -.+.|+|... .+ .. ...-.|.+.+++.+|.+.|.|.
T Consensus 13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca 92 (115)
T cd05721 13 NGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCK 92 (115)
T ss_pred CCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEE
Confidence 67899999997653 2 3678887311 11 00 1123578888899999999996
Q ss_pred E
Q psy12725 53 I 53 (119)
Q Consensus 53 ~ 53 (119)
.
T Consensus 93 ~ 93 (115)
T cd05721 93 I 93 (115)
T ss_pred e
Confidence 6
No 308
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.09 E-value=0.00094 Score=32.84 Aligned_cols=27 Identities=41% Similarity=1.016 Sum_probs=21.7
Q ss_pred CCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725 89 GPNYYFKCIA-SGNPTPEISWYLDGKKL 115 (119)
Q Consensus 89 g~~~~l~C~~-~~~p~~~~~W~~~~~~~ 115 (119)
|+.+.+.|.+ .+.|.+.+.|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 6789999975 56688899999998766
No 309
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.09 E-value=0.0011 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=26.3
Q ss_pred cccCCCCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725 84 ETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKL 115 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~ 115 (119)
..+.+|..+.|.|.. .+.|.+.+.|++++..+
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence 357789999999964 66788899999998754
No 310
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.08 E-value=0.0024 Score=31.99 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=22.8
Q ss_pred CCCcEEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725 88 PGPNYYFKCIASGN-PT-PEISWYLDGKKLV 116 (119)
Q Consensus 88 ~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~ 116 (119)
..+.+.|.|.+.|. |. ..+.|+++|..+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~ 43 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVAT 43 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence 34668999999997 43 3789999999863
No 311
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.08 E-value=0.003 Score=31.33 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=27.6
Q ss_pred CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
|.+...+ ...+.+|+.++|.|... .+...+.|+++|..
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~ 40 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGST 40 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCC
Confidence 4444433 34678999999999764 55668999998775
No 312
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.04 E-value=0.00064 Score=33.87 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=25.5
Q ss_pred ccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASG-----NPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~ 117 (119)
.+..|....|.|...+ .|.|.+.|+|++.++..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~ 43 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG 43 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC
Confidence 3557888999998643 25679999999998864
No 313
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.00 E-value=0.0022 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.683 Sum_probs=19.9
Q ss_pred EEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725 92 YYFKCIASGN-PT-PEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~-p~-~~~~W~~~~~~~~ 116 (119)
+.|.|.+.+. |. ..+.|++||..+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 6799999887 44 3799999998643
No 314
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.96 E-value=0.0016 Score=32.68 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=26.5
Q ss_pred ccccCCCCcEEEEeE-EccCCCCeEEEEECCEE
Q psy12725 83 DETLNPGPNYYFKCI-ASGNPTPEISWYLDGKK 114 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~ 114 (119)
...+.+|+.+.|.|. ..+.|.|.+.|++++..
T Consensus 12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~ 44 (95)
T cd05845 12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLL 44 (95)
T ss_pred eeEEecCCCEEEEecCCCCCCCCEEEEECCCCc
Confidence 446789999999997 68899999999976543
No 315
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.95 E-value=0.0019 Score=32.22 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.7
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYL 110 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~ 110 (119)
...+.+|+.+.|.|.+.+.+.+.+.|++
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~ 33 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSN 33 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeC
Confidence 3457889999999999887778999985
No 316
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.91 E-value=0.0014 Score=34.66 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=37.1
Q ss_pred CccEEEEEEeccC-----CCCeeEEeeCCccCCC----------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 2 LALKFFTCKYEGN-----PVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 2 g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~----------------------~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
.++|.++|.+... +.-.|.|..++..+.. .+.++|.+.....- .|.|+|.+.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence 4788999999652 2335899876654311 12345766654433 799999998
Q ss_pred cCCCCceeEeeEEE
Q psy12725 55 NEQESAQASGELKL 68 (119)
Q Consensus 55 ~~~~~~~~~~~~~v 68 (119)
......+..+.++.
T Consensus 106 ~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 106 ELSREGETTIELKY 119 (130)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ecCCCceEEEEEEE
Confidence 87554444444444
No 317
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.85 E-value=0.0037 Score=32.05 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=23.7
Q ss_pred CccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 82 SDETLNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
....+.+|+.++|.|...+ +.+.+.|||.
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 3456789999999999877 6678999985
No 318
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.84 E-value=0.0035 Score=31.53 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=22.8
Q ss_pred ccCCCCcEEEEeEEccC-CCC--eEEEEECCE
Q psy12725 85 TLNPGPNYYFKCIASGN-PTP--EISWYLDGK 113 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~ 113 (119)
.+..++.++|.|.+.+. .++ .+.|.+|+.
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 35567889999999998 443 689999874
No 319
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.78 E-value=0.0037 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.692 Sum_probs=24.2
Q ss_pred CCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725 88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLVN 117 (119)
Q Consensus 88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~ 117 (119)
.+..+.|.|.+.+. |.. .+.|+++|..+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~ 38 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE 38 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence 37889999999887 433 7999999998754
No 320
>smart00409 IG Immunoglobulin.
Probab=96.76 E-value=0.0061 Score=28.93 Aligned_cols=31 Identities=42% Similarity=0.917 Sum_probs=25.6
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEEC-CEEc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLD-GKKL 115 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~ 115 (119)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 456799999999998877779999997 6655
No 321
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.76 E-value=0.0061 Score=28.93 Aligned_cols=31 Identities=42% Similarity=0.917 Sum_probs=25.6
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEEC-CEEc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLD-GKKL 115 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~ 115 (119)
.+..|+.+.|.|.+.+.+.+.+.|+++ +..+
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 456799999999998877779999997 6655
No 322
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.71 E-value=0.0053 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=24.1
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
...+.+|+.+.|.|...+.+...+.|++.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 44578999999999988776778999975
No 323
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.68 E-value=0.004 Score=31.56 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.4
Q ss_pred cccCCCCcEEEEeEEccCCCCe-EEEEECCEEcc
Q psy12725 84 ETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLV 116 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~ 116 (119)
..+..|+.+.|.|.+.+.|+|. +.|.+++..+.
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~ 46 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLT 46 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccC
Confidence 4578999999999999999996 99999877654
No 324
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.57 E-value=0.0043 Score=30.83 Aligned_cols=25 Identities=12% Similarity=0.567 Sum_probs=20.9
Q ss_pred cCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 86 LNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
..+|+.+.|.|.. +.|.|.+.|+++
T Consensus 8 ~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 8 GVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EecCCcEEEEEEC-CCCCceEEEEEE
Confidence 4679999999996 478889999973
No 325
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.55 E-value=0.0093 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=23.2
Q ss_pred CccccCCCCcEEEEeEEccCC-CCeEEEEEC
Q psy12725 82 SDETLNPGPNYYFKCIASGNP-TPEISWYLD 111 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~ 111 (119)
....+.+|+.++|.|...+.. ...+.||+.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 344678999999999986654 567999974
No 326
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.48 E-value=0.005 Score=30.25 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=26.2
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 117 (119)
.+..|+.+.|.|..... .+.+.|+++|..+..
T Consensus 7 tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~ 38 (85)
T cd05872 7 TVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA 38 (85)
T ss_pred EEecCCCEEEECCCCCC-CccEEEEECCcccCC
Confidence 56789999999987654 569999999987754
No 327
>PHA03042 CD47-like protein; Provisional
Probab=96.39 E-value=0.068 Score=31.99 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=43.0
Q ss_pred CccEEEEEEeccC-----CCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 2 LALKFFTCKYEGN-----PVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 2 g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
.+++.+.|.+... ..-.+.|..++..+.. ...++|.+.. ...-.|+|+|++.+..........++..
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEEE
Confidence 3678999998653 2446999887765422 2334565543 3334799999998866555555555543
No 328
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.38 E-value=0.0096 Score=30.79 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=23.2
Q ss_pred ccccCCCCcEEEEeEEcc--CCCCeEEEEEC
Q psy12725 83 DETLNPGPNYYFKCIASG--NPTPEISWYLD 111 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~ 111 (119)
...+.+|+.++|.|...+ .+.+.+.|++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 345678999999999876 56678999974
No 329
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.32 E-value=0.023 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=23.7
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~ 114 (119)
...+.+|+.++|.|.... ....+.|+|+|..
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~ 39 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRS 39 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence 446789999999997644 4457999998754
No 330
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.11 E-value=0.0078 Score=30.22 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.5
Q ss_pred cCCCCcEEEEeEE-c----cCCCCeEEEEECCEEcc
Q psy12725 86 LNPGPNYYFKCIA-S----GNPTPEISWYLDGKKLV 116 (119)
Q Consensus 86 ~~~g~~~~l~C~~-~----~~p~~~~~W~~~~~~~~ 116 (119)
+..|....|.|.. . ..+.+.+.||||+.++.
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD 42 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence 4567788999973 2 23566899999999875
No 331
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.10 E-value=0.028 Score=33.41 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCCeeEEeeCC-ccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 15 PVKTISWMKDG-KPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 15 ~~~~v~w~~~~-~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
..|.+.|...+ ..+.. .....|++.+....++|.|+|.+.+..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 57899998743 33332 345779999999999999999998754
No 332
>KOG4597|consensus
Probab=96.09 E-value=0.015 Score=37.34 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCccEEEEEEeccCCCCeeEEee---CCccCCC-----------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMK---DGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~---~~~~~~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 66 (119)
+|++..++|-+.|.+.+.|+|.+ |.+.+.. .....|.|.+....|.|.|+|.+.+..+.....+..
T Consensus 210 ~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c 289 (560)
T KOG4597|consen 210 DWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPC 289 (560)
T ss_pred cchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecccee
Confidence 46788999999999999999975 3322211 123568888999999999999999988766665555
Q ss_pred EE
Q psy12725 67 KL 68 (119)
Q Consensus 67 ~v 68 (119)
.+
T Consensus 290 ~s 291 (560)
T KOG4597|consen 290 SS 291 (560)
T ss_pred ee
Confidence 44
No 333
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.07 E-value=0.006 Score=28.46 Aligned_cols=18 Identities=50% Similarity=1.149 Sum_probs=16.1
Q ss_pred EEEEeEEccCC-CCeEEEE
Q psy12725 92 YYFKCIASGNP-TPEISWY 109 (119)
Q Consensus 92 ~~l~C~~~~~p-~~~~~W~ 109 (119)
+.|.|.+.+.+ .+.+.|+
T Consensus 18 ~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp EEEEEEESSEESSEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE
Confidence 99999998886 6789999
No 334
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.04 E-value=0.022 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=24.4
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
...+.+|+++.|.|.+.+.....+.|++.+.
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~ 36 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNR 36 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCC
Confidence 3457889999999999877666788887653
No 335
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.77 E-value=0.031 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.641 Sum_probs=21.0
Q ss_pred ccCCCCcEEEEeEEccC--CCCeEEEEEC
Q psy12725 85 TLNPGPNYYFKCIASGN--PTPEISWYLD 111 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~ 111 (119)
.+.+|+++.|.|..... ....+.||+.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 46789999999997654 4457999974
No 336
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.69 E-value=0.043 Score=27.81 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred cCCCCcEEEEeEEccCC-C--CeEEEEECCEE
Q psy12725 86 LNPGPNYYFKCIASGNP-T--PEISWYLDGKK 114 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p-~--~~~~W~~~~~~ 114 (119)
...+..++|.|.+.+.. + ..+.|.++|..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 44677899999998864 2 27999999864
No 337
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.58 E-value=0.034 Score=28.00 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=22.0
Q ss_pred ccCCCCcEEEEeEEccC-CCCeEEEEECC
Q psy12725 85 TLNPGPNYYFKCIASGN-PTPEISWYLDG 112 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~ 112 (119)
.+.+|+.+.|.|..... +...+.|++..
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence 35689999999998765 55689999743
No 338
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=95.48 E-value=0.04 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=19.6
Q ss_pred CCcEEEEeEEccCCC--CeEEEEECCE
Q psy12725 89 GPNYYFKCIASGNPT--PEISWYLDGK 113 (119)
Q Consensus 89 g~~~~l~C~~~~~p~--~~~~W~~~~~ 113 (119)
|+.+.|.|.+.+.+. ..+.|...+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~ 27 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGK 27 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCc
Confidence 678999999987654 4789987665
No 339
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.35 E-value=0.051 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=21.1
Q ss_pred ccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725 85 TLNPGPNYYFKCIASGNPTPEISWYLDG 112 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 112 (119)
.+.+|+.++|.|.........+.|++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 3578999999998755444579999743
No 340
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.08 E-value=0.072 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.5
Q ss_pred CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725 81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD 111 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~ 111 (119)
+....+.+|+.++|.|...... ...+.||+.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 3455678999999999865432 346999974
No 341
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.08 E-value=0.023 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=19.7
Q ss_pred CCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 87 NPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 87 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
..|.+++|+|..... .+.|++++..+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~ 31 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQ 31 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCC
Confidence 368899999965422 399999986654
No 342
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.80 E-value=0.099 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725 83 DETLNPGPNYYFKCIASGN-PTPEISWYLD 111 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~ 111 (119)
...+..|+.+.|.|..... ....+.|++.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 4457899999999987543 3457999973
No 343
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.70 E-value=0.094 Score=26.76 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.5
Q ss_pred ccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725 85 TLNPGPNYYFKCIASGN-PTPEISWYLD 111 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~ 111 (119)
.+.+|+.++|.|..... ....+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 35789999999997653 3447999964
No 344
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=94.65 E-value=0.086 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=21.2
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYLD 111 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~ 111 (119)
+..+.+|+.+.|.|.......-.+.|+|.
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg 35 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKG 35 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcC
Confidence 44577899999999654333338999995
No 345
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=94.52 E-value=0.053 Score=26.60 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=19.3
Q ss_pred CCcEEEEeEEccCCCCeEEEEECCE
Q psy12725 89 GPNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 89 g~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
|++++|.|.........+.|+++..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCC
Confidence 6889999987665555899998653
No 346
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.24 E-value=0.3 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725 16 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR 54 (119)
Q Consensus 16 ~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~ 54 (119)
.+.+.|+..+.... ........+.....|.|.+.|.+.
T Consensus 26 ~~~~~l~~~~~k~~-~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSL-ETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEE-EESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCcccc-ccceEEEEecCCCCCCEEEEEEEc
Confidence 45666765443221 234566777888999999999994
No 347
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.21 E-value=0.23 Score=25.20 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=23.4
Q ss_pred ccCCCCcEEEEeEEccC-CC--CeEEEEECCEEcc
Q psy12725 85 TLNPGPNYYFKCIASGN-PT--PEISWYLDGKKLV 116 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~-p~--~~~~W~~~~~~~~ 116 (119)
....|..+++.|.+.+. |. ..+.|++....+.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~ 45 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP 45 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence 35789999999998655 43 3689988665543
No 348
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.20 E-value=0.16 Score=22.49 Aligned_cols=25 Identities=44% Similarity=0.934 Sum_probs=18.9
Q ss_pred EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 92 YYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 92 ~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
+.+.|.+.+.+...+.|++++....
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~ 25 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLP 25 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECC
Confidence 3678988776667899999876654
No 349
>PHA03052 Hypothetical protein; Provisional
Probab=94.15 E-value=0.21 Score=23.32 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=23.8
Q ss_pred ccCCCCcEEEEeEEc-cC--CCCeEEEEECCEEcc
Q psy12725 85 TLNPGPNYYFKCIAS-GN--PTPEISWYLDGKKLV 116 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~-~~--p~~~~~W~~~~~~~~ 116 (119)
.+..|..+++.|.+. +. ..+.+.|..|+..++
T Consensus 8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 8 VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred EEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 456789999999873 33 345799999988773
No 350
>KOG1480|consensus
Probab=93.97 E-value=0.048 Score=37.26 Aligned_cols=56 Identities=23% Similarity=0.488 Sum_probs=40.8
Q ss_pred ccEEEEEEe-ccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 3 ALKFFTCKY-EGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 3 ~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
..+.+.|.. .+.|...+.|++++..+... ....+.+..+.+.|.|+|+|++.+-..
T Consensus 145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~ 207 (909)
T KOG1480|consen 145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVA 207 (909)
T ss_pred ccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhc
Confidence 344566665 34567789999998776542 235678888899999999999988653
No 351
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=93.96 E-value=0.16 Score=25.14 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=20.5
Q ss_pred ccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725 85 TLNPGPNYYFKCIASGNP--TPEISWYL 110 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~p--~~~~~W~~ 110 (119)
.+..|++++|+|+....+ .+.+.|+.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~ 37 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRG 37 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeC
Confidence 567899999999985543 44899985
No 352
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.92 E-value=0.39 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725 32 NEPVFRIDSVRKEDKGMYQCVIRNEQESA 60 (119)
Q Consensus 32 ~~~~l~~~~~~~~d~g~y~C~~~~~~~~~ 60 (119)
.+.+|.|..+++.|+|.|.-++.+..|..
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcE
Confidence 46789999999999999999999876654
No 353
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=93.36 E-value=0.28 Score=24.64 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=17.5
Q ss_pred CcEEEEeEE-ccCCCCeEEEEEC
Q psy12725 90 PNYYFKCIA-SGNPTPEISWYLD 111 (119)
Q Consensus 90 ~~~~l~C~~-~~~p~~~~~W~~~ 111 (119)
....+.|.+ .+.|.+.|.|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 346678987 5678889999986
No 354
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.15 E-value=0.17 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=20.8
Q ss_pred ccCCCCcEEE-EeEE-ccCCCCeEEEEEC
Q psy12725 85 TLNPGPNYYF-KCIA-SGNPTPEISWYLD 111 (119)
Q Consensus 85 ~~~~g~~~~l-~C~~-~~~p~~~~~W~~~ 111 (119)
.+.+|+.+.+ .|.+ .+.|.+.+.|+.+
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 3557788888 8875 5668889999976
No 355
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=93.05 E-value=0.2 Score=25.28 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=22.2
Q ss_pred CccccCCCCcEEEEeEEc-cCCCCeEEEEE
Q psy12725 82 SDETLNPGPNYYFKCIAS-GNPTPEISWYL 110 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~ 110 (119)
....+..|+.+.|.|... ......+.|++
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 344567899999999987 34455899997
No 356
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=92.97 E-value=0.25 Score=28.08 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.6
Q ss_pred cccCCCCcEEEEeEEc-cCCCCeEEEEECC
Q psy12725 84 ETLNPGPNYYFKCIAS-GNPTPEISWYLDG 112 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~ 112 (119)
..+.+|++++|.|... +...+.+.|+|+.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~ 54 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNN 54 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcC
Confidence 3567899999999974 4456689999864
No 357
>PHA03270 envelope glycoprotein C; Provisional
Probab=92.76 E-value=1.8 Score=28.13 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=53.9
Q ss_pred CccEEEEEEeccC-C--CCeeEEeeCCccCCCC----------CCCeEEEecCCCCCC------eEEEEEEEcCCCC-ce
Q psy12725 2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDK------GMYQCVIRNEQES-AQ 61 (119)
Q Consensus 2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~------g~y~C~~~~~~~~-~~ 61 (119)
|+.-.-.|.+..+ | ...+.||+|+..+... .+.......++..+. -+..|.+.-.... ..
T Consensus 234 Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~ 313 (466)
T PHA03270 234 GEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSF 313 (466)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccc
Confidence 7777888999776 4 3378999999876421 111112222333222 3688987532222 12
Q ss_pred eEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCE
Q psy12725 62 ASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113 (119)
Q Consensus 62 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~ 113 (119)
......+. ..+.+|.+.... ..| .-.|.+...|.- .+.|+.++.
T Consensus 314 sR~nAa~~P~VY~~P~Isv~F-----~dG---~AVCtA~CVPegV~l~W~V~D~ 359 (466)
T PHA03270 314 SRRNATGAPTVLPRPTIEMEF-----GGD---EAVCTAACVPEGVTLAWLLGAD 359 (466)
T ss_pred eeecccccCccccCCeEEEEE-----eCC---EEEEeccccCCCCEEEEEecCC
Confidence 22222211 113456555432 222 334777666643 789986543
No 358
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=92.15 E-value=0.14 Score=25.62 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=18.9
Q ss_pred CCCcEEEEeEEcc-CCCCeEEEEECCE
Q psy12725 88 PGPNYYFKCIASG-NPTPEISWYLDGK 113 (119)
Q Consensus 88 ~g~~~~l~C~~~~-~p~~~~~W~~~~~ 113 (119)
.|++++|.|.... .....+.|++...
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~ 29 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTS 29 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence 5889999997654 3344799998643
No 359
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.13 E-value=1.2 Score=27.90 Aligned_cols=21 Identities=14% Similarity=0.569 Sum_probs=17.1
Q ss_pred cEEEEEEeccC-C-CCeeEEeeC
Q psy12725 4 LKFFTCKYEGN-P-VKTISWMKD 24 (119)
Q Consensus 4 ~~~l~c~~~~~-~-~~~v~w~~~ 24 (119)
.++|+|.+.|. | ...+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 46899999986 4 457899999
No 360
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=91.87 E-value=0.6 Score=24.46 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=21.2
Q ss_pred CccccCCCCcEEEEeEEccCC--C-CeEEEEEC
Q psy12725 82 SDETLNPGPNYYFKCIASGNP--T-PEISWYLD 111 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~p--~-~~~~W~~~ 111 (119)
....+.+|..++|.|...+.. . ..+.|.|.
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 344567788899999986653 3 36888874
No 361
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=91.54 E-value=0.37 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=19.8
Q ss_pred ccccCCCCcEEEEeEEccCC----CCeEEEEE
Q psy12725 83 DETLNPGPNYYFKCIASGNP----TPEISWYL 110 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~ 110 (119)
...+..|+.++|.|...... ...+.|++
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 34567899999999874332 24699985
No 362
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.30 E-value=1 Score=22.36 Aligned_cols=55 Identities=13% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCccEEEEEEeccC-----CCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 1 MLALKFFTCKYEGN-----PVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 1 ~g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|..++..|..... ....+.|.-++..++.. ..+..++.+........|-|....
T Consensus 17 lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 17 LGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp TTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred CCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 58999999998643 34578898887765432 123455555555444556665443
No 363
>PHA03271 envelope glycoprotein C; Provisional
Probab=91.29 E-value=2.8 Score=27.24 Aligned_cols=104 Identities=13% Similarity=0.265 Sum_probs=53.1
Q ss_pred CccEEEEEEeccC-C--CCeeEEeeCCccCCCCC---C--------------CeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725 2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDHN---E--------------PVFRIDSVRKEDKGMYQCVIRNEQESAQ 61 (119)
Q Consensus 2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~~---~--------------~~l~~~~~~~~d~g~y~C~~~~~~~~~~ 61 (119)
|+.-.-.|.+..+ | ...+.|++|+....... . +++.+.......--..+|.+.-......
T Consensus 260 Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~ 339 (490)
T PHA03271 260 GENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMI 339 (490)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCce
Confidence 7788889999776 4 33689999987664321 0 1122222211223368898754322222
Q ss_pred eEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCE
Q psy12725 62 ASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGK 113 (119)
Q Consensus 62 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~ 113 (119)
......+. ..+.+|.+... ...| .-.|.+...|. ..+.|+-++.
T Consensus 340 s~rnAaatP~VY~~P~ISv~-----FedG---~AVCtA~CVP~gV~lrWlVgD~ 385 (490)
T PHA03271 340 STTNATAIPTVYHHPRISLA-----FKDG---YAICTIECVPSGITVRWLVHDE 385 (490)
T ss_pred eeeecccCCccccCCeEEEE-----EeCC---EEEEeccccCCCcEEEEEecCC
Confidence 22222211 11345555542 2233 33477766653 3789985443
No 364
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=91.25 E-value=0.3 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=20.0
Q ss_pred cCCCCcEEEEeEEccC-CCCeEEEEECC
Q psy12725 86 LNPGPNYYFKCIASGN-PTPEISWYLDG 112 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~-p~~~~~W~~~~ 112 (119)
+.+|++++|.|..... ....+.|++..
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 5679999999986542 45578999753
No 365
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=89.92 E-value=0.7 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=20.0
Q ss_pred ccccCCCCcEEEEeEEccCC------CCeEEEEEC
Q psy12725 83 DETLNPGPNYYFKCIASGNP------TPEISWYLD 111 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~ 111 (119)
...+..|+.++|.|...... ...+.|++.
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 34577899999999753211 235899975
No 366
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.32 E-value=1.4 Score=21.90 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCccccCCCCcEEEEeEEccC-----CCCeEEEEECCEEccc
Q psy12725 81 FSDETLNPGPNYYFKCIASGN-----PTPEISWYLDGKKLVN 117 (119)
Q Consensus 81 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~ 117 (119)
+....+..|..++..|..... ....+.|+.++..+..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~ 51 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG 51 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence 334457789999999987432 3347899987776554
No 367
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=89.16 E-value=0.84 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=19.5
Q ss_pred ccccCCCCcEEEEeEEccCC----CCeEEEEE
Q psy12725 83 DETLNPGPNYYFKCIASGNP----TPEISWYL 110 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~ 110 (119)
...+..|+.+.|.|.....+ ...+.|++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 34567899999999865332 23699974
No 368
>PHA03269 envelope glycoprotein C; Provisional
Probab=88.40 E-value=5.6 Score=26.51 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=53.5
Q ss_pred CccEEEEEEeccC-C--CCeeEEeeCCccCCCC----------CCCeEEEecCCC-----CC--CeEEEEEEEc-CCCCc
Q psy12725 2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDH----------NEPVFRIDSVRK-----ED--KGMYQCVIRN-EQESA 60 (119)
Q Consensus 2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~-----~d--~g~y~C~~~~-~~~~~ 60 (119)
|+.-.-.|.+..+ | ...+.||+|+..+... .+..-.+..++. .+ --..+|.+.- ..+..
T Consensus 342 Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS 421 (566)
T PHA03269 342 GNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS 421 (566)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch
Confidence 7788889999776 3 3378999997766421 111112222222 11 2346897653 22222
Q ss_pred eeEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCE
Q psy12725 61 QASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGK 113 (119)
Q Consensus 61 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~ 113 (119)
.......+. ..+.+|.+.... ..| ...|.+...|. ..+.|+.++.
T Consensus 422 ~tRfnAaatP~VY~~PtISm~F-----edG---~AVCtA~CVP~~~V~l~WlVgD~ 469 (566)
T PHA03269 422 HMKYSAAVTPDVYPFPNVSIEI-----IDG---HIVCLAKCVPRGVVHFNWWINDI 469 (566)
T ss_pred heecccccCCccccCCeEEEEE-----eCC---EEEEecccccCCCceEEEEecCC
Confidence 222222221 113456555432 223 34488777765 3789986543
No 369
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=87.07 E-value=1.5 Score=20.44 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=24.6
Q ss_pred EEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 55 (119)
Q Consensus 6 ~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~ 55 (119)
+|.|... ....++||-|+..+-.-....+.+.. -.++|+|+-..
T Consensus 2 tltC~s~--~sLPiswYcN~TRLlRlt~~Tlt~~~----ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSN--ASLPISWYCNGTRLLRLTQQTLTVVT----LTCNFTCVGQS 45 (71)
T ss_pred ceecCCC--CCCcccEEECCceeeeecCCeEeeee----eeEEeeecCCC
Confidence 3566543 34458999998876443444444321 13566775543
No 370
>PHA03273 envelope glycoprotein C; Provisional
Probab=86.39 E-value=7.4 Score=25.74 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=54.6
Q ss_pred CccEEEEEEeccC-C--CCeeEEeeCCccCCC-C----------CC-----CeEEEecCCC-CCCeEEEEEEEcCCCC-c
Q psy12725 2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPD-H----------NE-----PVFRIDSVRK-EDKGMYQCVIRNEQES-A 60 (119)
Q Consensus 2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~-~----------~~-----~~l~~~~~~~-~d~g~y~C~~~~~~~~-~ 60 (119)
|+.-.-.|.+..+ | ...+.||+|+..+.. . .+ +.+.+..... ..--..+|.+.-.... .
T Consensus 250 Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS 329 (486)
T PHA03273 250 GENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVS 329 (486)
T ss_pred CCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcc
Confidence 7778888999776 4 337899999987762 1 11 1222222211 2234688987533222 2
Q ss_pred eeEeeEEE-eeecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECC
Q psy12725 61 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDG 112 (119)
Q Consensus 61 ~~~~~~~v-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~ 112 (119)
.......+ ...+.+|.+.... ..| ...|.+...|. ..+.|+.++
T Consensus 330 ~~RfsAt~~P~Vy~~P~Is~~F-----~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 330 FARIAKAGTPSVFVAPTVSVTV-----EDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred eeeccccccCccccCCeEEEEE-----eCC---EEEEecccccCCCeeEEEEccC
Confidence 22212121 1113456555432 222 34588877765 478998544
No 371
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=83.07 E-value=4.6 Score=20.53 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=28.6
Q ss_pred EEEEE-eccCCCCeeEEeeC--Ccc----CCCCCC-----CeEEEecCCCCCCeEEEEEEEcC
Q psy12725 6 FFTCK-YEGNPVKTISWMKD--GKP----VPDHNE-----PVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 6 ~l~c~-~~~~~~~~v~w~~~--~~~----~~~~~~-----~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.-.|. ..|.|...|+|..+ |.. .....+ +.+.+-.....|....+|++.+.
T Consensus 24 VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 24 VATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 45677 46778899999742 221 111111 22333334455666788888775
No 372
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=79.11 E-value=15 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=24.4
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCC-CCceeEeeEEE
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGELKL 68 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~~-~~~~~~~~~~v 68 (119)
...+.+.+++..|+|.|.|.+-... ....+.+.+.+
T Consensus 80 eYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrV 116 (500)
T PHA02914 80 EYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRK 116 (500)
T ss_pred eeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEE
Confidence 3567888899999999999886442 23444444443
No 373
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=77.54 E-value=12 Score=22.05 Aligned_cols=90 Identities=14% Similarity=0.332 Sum_probs=44.6
Q ss_pred CeeEEeeCCccCCCC----------CC-----CeEEEecC-CCCCCeEEEEEEEcCCC-CceeEeeEEEee-ecCCCeee
Q psy12725 17 KTISWMKDGKPVPDH----------NE-----PVFRIDSV-RKEDKGMYQCVIRNEQE-SAQASGELKLGG-RFDPPVIK 78 (119)
Q Consensus 17 ~~v~w~~~~~~~~~~----------~~-----~~l~~~~~-~~~d~g~y~C~~~~~~~-~~~~~~~~~v~~-~~~~~~~~ 78 (119)
..+.|+.|+..+... .+ +.+.+... .....-..+|.+.-... .........+.. .+.+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 368899988776532 11 22333111 22233568898753322 222222222211 13456555
Q ss_pred ecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEE
Q psy12725 79 ESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKK 114 (119)
Q Consensus 79 ~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~ 114 (119)
... .+ -...|.+...|. ..+.|.-++.+
T Consensus 87 v~F-----~~---g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 87 VRF-----ED---GYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred EEe-----cC---CEEEEEcceeeCCCeEEEEEECCcc
Confidence 532 22 244587777763 47999976654
No 374
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=76.58 E-value=7.5 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=17.5
Q ss_pred cEEEEeEEccCCCC--eEEEEEC
Q psy12725 91 NYYFKCIASGNPTP--EISWYLD 111 (119)
Q Consensus 91 ~~~l~C~~~~~p~~--~~~W~~~ 111 (119)
.+.|.|.+.|..+. .+.|.+|
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998444 6899998
No 375
>KOG1026|consensus
Probab=75.09 E-value=12 Score=26.64 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=36.5
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCCC-CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~-~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 67 (119)
|..+++.|...+.+.+...|+.+......... ..+.. ....--. .+.|...+..+.....+.+.
T Consensus 207 ~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~-~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 207 GSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SECEVLE-NDLCIAENAVARSNPSILLV 271 (774)
T ss_pred cchheeeeecccCCCcceeeecccccccCCCccccccc-ccceeee-chhhHHHHhhhhcCceeeeE
Confidence 56788999999999999999876654433221 11111 1111111 17788777665544444333
No 376
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=72.53 E-value=9.5 Score=19.17 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=18.2
Q ss_pred cCCccccCCCCcEEEEeEEccCCCCeEEE
Q psy12725 80 SFSDETLNPGPNYYFKCIASGNPTPEISW 108 (119)
Q Consensus 80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W 108 (119)
.|....+..|+++.++|......+..+-|
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GL 37 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGL 37 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceE
Confidence 34445577889999999876543334444
No 377
>PHA03240 envelope glycoprotein M; Provisional
Probab=69.20 E-value=7.2 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.8
Q ss_pred CCeEEEecCCCCCCeEEEEE
Q psy12725 33 EPVFRIDSVRKEDKGMYQCV 52 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~ 52 (119)
+++|.|..++.+|.|+|.-.
T Consensus 104 NstL~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRK 123 (258)
T ss_pred cceEEEEEEeecCcchhhhc
Confidence 46788889999999997543
No 378
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.41 E-value=13 Score=17.28 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=11.2
Q ss_pred CccEEEEEEeccCCCCeeEEee
Q psy12725 2 LALKFFTCKYEGNPVKTISWMK 23 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~ 23 (119)
|+.++|. |.+...|+||+
T Consensus 5 G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 5 GSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred cCcEEEe----CCCCCceEEEE
Confidence 5555553 54556799994
No 379
>KOG0613|consensus
Probab=60.45 E-value=28 Score=26.34 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=58.7
Q ss_pred ccEEEEEEeccCCCCe-eEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725 3 ALKFFTCKYEGNPVKT-ISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG 70 (119)
Q Consensus 3 ~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~ 70 (119)
..+++.|...+...+. +.||++........ ...+.+..+...+.+.|.|.+.|..+.........+..
T Consensus 350 ~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~ 429 (1205)
T KOG0613|consen 350 TLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSE 429 (1205)
T ss_pred cceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccc
Confidence 4567777777766554 88887654332211 12345555666677788899998876544333333322
Q ss_pred e--cCCCeeeecCCccccC--CCCcEEEEeEEccCCCC--eEEEEECC
Q psy12725 71 R--FDPPVIKESFSDETLN--PGPNYYFKCIASGNPTP--EISWYLDG 112 (119)
Q Consensus 71 ~--~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~p~~--~~~W~~~~ 112 (119)
. ...+............ .-+.+.+.|.....+.+ .++|++++
T Consensus 430 ~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~ 477 (1205)
T KOG0613|consen 430 EMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG 477 (1205)
T ss_pred ccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCC
Confidence 1 1112111111111222 23677788887776644 55666554
No 380
>PHA03282 envelope glycoprotein E; Provisional
Probab=57.95 E-value=41 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
+.++.|.+++.+|+|.|+-.+...
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred cceEEEeeccccCCceEEEEecCC
Confidence 457999999999999999887543
No 381
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=56.77 E-value=26 Score=17.92 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred ccCCCCcEEEEeEEccC----CC-CeEEEEECCEEccc
Q psy12725 85 TLNPGPNYYFKCIASGN----PT-PEISWYLDGKKLVN 117 (119)
Q Consensus 85 ~~~~g~~~~l~C~~~~~----p~-~~~~W~~~~~~~~~ 117 (119)
....|....+.|++... |. -++.|+..++.+..
T Consensus 12 ~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 12 ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 35577788889987543 21 27999988887653
No 382
>PHA03189 UL14 tegument protein; Provisional
Probab=55.42 E-value=51 Score=20.89 Aligned_cols=18 Identities=50% Similarity=0.983 Sum_probs=14.7
Q ss_pred cCCCCCCeEEEEEEEcCC
Q psy12725 40 SVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 40 ~~~~~d~g~y~C~~~~~~ 57 (119)
.+..+.+|.|.|+..|..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 456677899999999874
No 383
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=52.05 E-value=43 Score=18.97 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=20.0
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNEQ 57 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~~ 57 (119)
+..|.+.+.+.+|+|.|.-.++-..
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECC
Confidence 3458889999999999998887543
No 384
>PHA03112 IL-18 binding protein; Provisional
Probab=51.79 E-value=40 Score=18.60 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=17.7
Q ss_pred CccEEEEEEeccC-C-CCeeEEeeCC
Q psy12725 2 LALKFFTCKYEGN-P-VKTISWMKDG 25 (119)
Q Consensus 2 g~~~~l~c~~~~~-~-~~~v~w~~~~ 25 (119)
|+.+.|+|..-+. | ..-+.|..++
T Consensus 38 ~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 38 TEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCEEEEEEECccCCCCceEEEEEcCC
Confidence 5788999998765 5 3568898544
No 385
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=48.76 E-value=33 Score=16.76 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEEEEEeccCCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725 5 KFFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59 (119)
Q Consensus 5 ~~l~c~~~~~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~ 59 (119)
..|.+.+.+. ...+.||-|++.+.. .....+. ......|.|.-.+....+.
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~---~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLF---WQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEE---eCCCCCeeEEEEEEcCCCC
Confidence 4455555554 448999999998832 2223332 2345678888877665543
No 386
>KOG4597|consensus
Probab=47.05 E-value=15 Score=24.58 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=24.0
Q ss_pred ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725 83 DETLNPGPNYYFKCIASGNPTPEISWYL 110 (119)
Q Consensus 83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~ 110 (119)
...+..+++..++|.+.|.+.+.+.|.+
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeeh
Confidence 4456788999999999999999999975
No 387
>KOG3265|consensus
Probab=46.89 E-value=30 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.573 Sum_probs=18.9
Q ss_pred ccEEEEEEeccCCCCeeEEeeCC
Q psy12725 3 ALKFFTCKYEGNPVKTISWMKDG 25 (119)
Q Consensus 3 ~~~~l~c~~~~~~~~~v~w~~~~ 25 (119)
..+-|+|.+.+.....+.||-++
T Consensus 93 TviLltC~Y~gQEFIRvGYyVnN 115 (250)
T KOG3265|consen 93 TVILLTCSYRGQEFIRVGYYVNN 115 (250)
T ss_pred EEEEEEEEEcCceeEEEEEEecC
Confidence 34579999999888899999765
No 388
>PHA03292 envelope glycoprotein I; Provisional
Probab=40.43 E-value=1.1e+02 Score=20.23 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725 34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69 (119)
Q Consensus 34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~ 69 (119)
..|.|.+.+..|.|.|.-.++-......-.+.+.+.
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvf 163 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAF 163 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEE
Confidence 467888889999999999887554333333444443
No 389
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=37.98 E-value=62 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725 32 NEPVFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 32 ~~~~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
..-.|.+.+....++|.|.|++..-
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEET
T ss_pred CCcceEecCCCcccCceEEEEEEEC
Confidence 4567899999999999999998753
No 390
>PHA03286 envelope glycoprotein E; Provisional
Probab=33.94 E-value=1.5e+02 Score=20.13 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=45.5
Q ss_pred CCCeEEEecCCCCCCeEEEEEEEcCCCCce-eEeeEEEeee--cCCCeee--e------------cCCccccCCCCcEEE
Q psy12725 32 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGR--FDPPVIK--E------------SFSDETLNPGPNYYF 94 (119)
Q Consensus 32 ~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v~~~--~~~~~~~--~------------~~~~~~~~~g~~~~l 94 (119)
....+.|.+.+..+.|.|+-...+..+... ..+-+.+... ..+|.+. . .........|+++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 347899999999999999998887643322 2334444321 1122111 1 122334567888876
Q ss_pred EeEEc-cC----CCCeEEEEE
Q psy12725 95 KCIAS-GN----PTPEISWYL 110 (119)
Q Consensus 95 ~C~~~-~~----p~~~~~W~~ 110 (119)
.-... .. ....+.|+.
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 65442 11 233789974
No 391
>PHA03289 envelope glycoprotein I; Provisional
Probab=32.48 E-value=1.4e+02 Score=19.24 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNEQE 58 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~~~ 58 (119)
+..|.+...+..|+|.|.-.++-...
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 44678888999999999998875543
No 392
>KOG0613|consensus
Probab=31.91 E-value=2.5e+02 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred cCCCCcEEEEeEEccCCCC-eEEEEECCEE
Q psy12725 86 LNPGPNYYFKCIASGNPTP-EISWYLDGKK 114 (119)
Q Consensus 86 ~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~ 114 (119)
...+..+.+.|...+.+.+ .+.|+++..-
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~ 375 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEV 375 (1205)
T ss_pred cccCcceeecccccCCcCCchheeeccccc
Confidence 3456678888888888777 4999986543
No 393
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=30.35 E-value=2.1e+02 Score=20.65 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCccEEEEEEeccCCCCeeEE--eeCCccCCCC---CCCeEEEecCCCCCCeEEEEEEEcC--CC--C--ceeEeeEEEe
Q psy12725 1 MLALKFFTCKYEGNPVKTISW--MKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNE--QE--S--AQASGELKLG 69 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w--~~~~~~~~~~---~~~~l~~~~~~~~d~g~y~C~~~~~--~~--~--~~~~~~~~v~ 69 (119)
+|+.+.+.+.+.+.....+.+ .++|..+... ....+. ..+...|.|+-.+.-. .. . ....+.+.+.
T Consensus 400 vG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 400 KGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVN---FIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred eCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEE---EEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 488999999988754444443 3466654321 222332 3457789999876432 11 1 2223344443
Q ss_pred eecCCCe-ee--ecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEc
Q psy12725 70 GRFDPPV-IK--ESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKL 115 (119)
Q Consensus 70 ~~~~~~~-~~--~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~ 115 (119)
...|. +. +.+......-|+.+++.+.+.+.... .+.-..+|..+
T Consensus 477 --e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v 525 (667)
T PRK14081 477 --EYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKV 525 (667)
T ss_pred --ccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEE
Confidence 22343 22 22333456778999999987665433 33334566655
No 394
>PHA03290 envelope glycoprotein I; Provisional
Probab=30.09 E-value=1.6e+02 Score=19.13 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 33 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 33 ~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
+..|.+.+.+.+|+|.|.-.++-......-.+.+.+
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv 163 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGL 163 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEE
Confidence 456888899999999999988755433323333433
No 395
>PHA03283 envelope glycoprotein E; Provisional
Probab=29.46 E-value=2e+02 Score=20.04 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 32 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 32 ~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
....+.|.+.+..+.|.|+-...+..+.....+-+++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtV 168 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTV 168 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEe
Confidence 4578999999999999999988876552222333444
No 396
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=29.29 E-value=28 Score=18.91 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.0
Q ss_pred CCCeeEEeeCCc
Q psy12725 15 PVKTISWMKDGK 26 (119)
Q Consensus 15 ~~~~v~w~~~~~ 26 (119)
...+++||+|+.
T Consensus 98 GAssYRWFHdgC 109 (132)
T PF04668_consen 98 GASSYRWFHDGC 109 (132)
T ss_pred Ccccceeeccch
Confidence 456899999863
No 397
>COG5475 Uncharacterized small protein [Function unknown]
Probab=28.74 E-value=69 Score=14.54 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.7
Q ss_pred CeEEEEEEEcCCC
Q psy12725 46 KGMYQCVIRNEQE 58 (119)
Q Consensus 46 ~g~y~C~~~~~~~ 58 (119)
.|.|.|...+..+
T Consensus 28 ~Gmy~C~Wf~g~g 40 (60)
T COG5475 28 DGMYECRWFDGYG 40 (60)
T ss_pred CCeEEEEEecCCC
Confidence 3899999988765
No 398
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=28.23 E-value=69 Score=14.58 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=15.8
Q ss_pred CCccEEEEEEeccCCCCeeEEeeCC
Q psy12725 1 MLALKFFTCKYEGNPVKTISWMKDG 25 (119)
Q Consensus 1 ~g~~~~l~c~~~~~~~~~v~w~~~~ 25 (119)
.|+.+.|...........+.|.-.+
T Consensus 10 ~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 10 TGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp TTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCCEEEEEEEccCCCCeEEEEEECC
Confidence 3677888877733345578887665
No 399
>PHA03298 envelope glycoprotein L; Provisional
Probab=26.42 E-value=68 Score=17.44 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.1
Q ss_pred CCCCeEEEEECCEEc
Q psy12725 101 NPTPEISWYLDGKKL 115 (119)
Q Consensus 101 ~p~~~~~W~~~~~~~ 115 (119)
.++..+.||++|...
T Consensus 93 s~pEvI~wyksGtA~ 107 (167)
T PHA03298 93 SNPEAIFWYKNGTAA 107 (167)
T ss_pred CCceeEEEecCCceE
Confidence 345579999998754
No 400
>KOG1026|consensus
Probab=25.47 E-value=79 Score=23.00 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=26.5
Q ss_pred cccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725 84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116 (119)
Q Consensus 84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~ 116 (119)
..+..+..+++.|.+.+.+.|.+.|+.++....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~ 234 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASS 234 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeeccccccc
Confidence 456678899999999999999999987665443
No 401
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=25.46 E-value=1e+02 Score=17.93 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=17.8
Q ss_pred eEEEecCCCCCCeEEEEEEEcC
Q psy12725 35 VFRIDSVRKEDKGMYQCVIRNE 56 (119)
Q Consensus 35 ~l~~~~~~~~d~g~y~C~~~~~ 56 (119)
.++++.+...-.|.|.|.+...
T Consensus 94 ~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 94 SMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred EEEEEEecCCCCcCeEEEECCC
Confidence 4677778888899999999765
No 402
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=24.35 E-value=45 Score=13.45 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=6.9
Q ss_pred CCCCeEEEEE
Q psy12725 43 KEDKGMYQCV 52 (119)
Q Consensus 43 ~~d~g~y~C~ 52 (119)
..+.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3467888883
No 403
>PF09739 MCM_bind: Mini-chromosome maintenance replisome factor; InterPro: IPR019140 This entry represents a family of proteins which are approximately 600 residues in length and contain alternating regions of conservation and low complexity. They are associated components of the mini-chromosome maintenance (MCM) complex that acts as a regulator of DNA replication. They bind to the MCM complex during late S phase and promotes the disassembly of the MCM complex from chromatin, thereby acting as a key regulator of pre-replication complex (pre-RC) unloading from replicated DNA. Can dissociate the MCM complex without addition of ATP; probably acts by destabilising interactions of each individual subunits of the MCM complex. Required for sister chromatid cohesion [, ].
Probab=23.86 E-value=1.3e+02 Score=16.15 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=13.4
Q ss_pred CccEEEEEEeccCCCCee
Q psy12725 2 LALKFFTCKYEGNPVKTI 19 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v 19 (119)
|+-|.|+|.++....+.+
T Consensus 27 ~sLVRfRgMIQDm~~pE~ 44 (123)
T PF09739_consen 27 GSLVRFRGMIQDMFDPEF 44 (123)
T ss_pred CCEEEEEEEeecCCCCEE
Confidence 677899999987655543
No 404
>KOG0427|consensus
Probab=23.15 E-value=47 Score=17.98 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=16.6
Q ss_pred CcEEEEeEEccCCCCeEEEEECCE
Q psy12725 90 PNYYFKCIASGNPTPEISWYLDGK 113 (119)
Q Consensus 90 ~~~~l~C~~~~~p~~~~~W~~~~~ 113 (119)
+...-+|.....|...-+||+|++
T Consensus 137 ~~Yvk~C~~grsPk~TrWwfHDD~ 160 (161)
T KOG0427|consen 137 DRYVKNCKNGRSPKETRWWFHDDK 160 (161)
T ss_pred chhhhhccCCCCcccceeeeccCC
Confidence 334457877677777888888764
No 405
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.93 E-value=5.3e+02 Score=22.78 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecC
Q psy12725 2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 81 (119)
Q Consensus 2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 81 (119)
|..+.|.-++.....-.+.|.-++..-.....-...+. +.|.|...+.-........+...+.+....-.+....
T Consensus 1800 g~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~-----~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~a 1874 (2740)
T TIGR00864 1800 DSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFP-----DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKA 1874 (2740)
T ss_pred CcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecC-----CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEec
Q ss_pred CccccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725 82 SDETLNPGPNYYFKCIASGNPTPEISWYLDG 112 (119)
Q Consensus 82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 112 (119)
....+..|+.+.|.+.....+...+.|...+
T Consensus 1875 s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1875 SKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred ccccccCCCEEEEEEEecCCCceEEEEEeCC
No 406
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=22.40 E-value=90 Score=17.20 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=10.7
Q ss_pred CCccEEEEEEecc
Q psy12725 1 MLALKFFTCKYEG 13 (119)
Q Consensus 1 ~g~~~~l~c~~~~ 13 (119)
.|++|+++|+...
T Consensus 46 ~GeTvEIR~~l~r 58 (137)
T PF12988_consen 46 KGETVEIRCELKR 58 (137)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEec
Confidence 4899999999853
No 407
>PHA03291 envelope glycoprotein I; Provisional
Probab=21.83 E-value=2.5e+02 Score=18.53 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725 34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68 (119)
Q Consensus 34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v 68 (119)
-.|.+.+....|.|.|.-.++-........+.+.+
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~ 163 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGL 163 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEee
Confidence 45788888999999999988765433333333333
No 408
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=21.31 E-value=92 Score=13.91 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=11.1
Q ss_pred CCCeEEEEEEEcCCCC
Q psy12725 44 EDKGMYQCVIRNEQES 59 (119)
Q Consensus 44 ~d~g~y~C~~~~~~~~ 59 (119)
..+..|.|.+.+..+.
T Consensus 8 dssnsflctvqnkng~ 23 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGD 23 (65)
T ss_pred cCCCceEEEEecccHh
Confidence 3445789999887543
No 409
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=21.02 E-value=23 Score=16.56 Aligned_cols=15 Identities=47% Similarity=0.807 Sum_probs=1.9
Q ss_pred EEEecCCCCCCeEEE
Q psy12725 36 FRIDSVRKEDKGMYQ 50 (119)
Q Consensus 36 l~~~~~~~~d~g~y~ 50 (119)
+.+...+..|+|.|.
T Consensus 31 f~iyR~rkkdEGSY~ 45 (64)
T PF01034_consen 31 FLIYRMRKKDEGSYD 45 (64)
T ss_dssp ------S------SS
T ss_pred HHHHHHHhcCCCCcc
Confidence 344555677777765
Done!