RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12725
(119 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 141 bits (356), Expect = 2e-40
Identities = 76/113 (67%), Positives = 97/113 (85%), Gaps = 1/113 (0%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
FTC+Y GNP+KT+SWMKDGK + H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 363 FTCQYTGNPIKTVSWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Query: 67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
KLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N +
Sbjct: 422 KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Score = 98.1 bits (244), Expect = 2e-25
Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
C +G PV W K + I ED G Y CV+ N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
L + P K +T++ G F C +GNP +SW DGK +
Sbjct: 328 SVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384
Query: 116 VNAE 119
++E
Sbjct: 385 GHSE 388
Score = 93.5 bits (232), Expect = 1e-23
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
F C GNP ISW DGK + +++ I SV D G+Y+C
Sbjct: 448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ +++ A+ S +L + + P I++ + + G C +G P I W D
Sbjct: 508 IAKSKVGVAEHSAKLNV---YGLPYIRQM-EKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 112 GKKL 115
+ L
Sbjct: 564 NRAL 567
Score = 92.7 bits (230), Expect = 2e-23
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF----------RIDSVRKEDKGMYQCVIRN 55
C G + I W DG+ + + I++V G + C RN
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
Q + L + + PP +D+ G + +C A G P P+++W
Sbjct: 699 LAGHQQFTTPLNV---YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT 755
Score = 90.4 bits (224), Expect = 1e-22
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKGMYQCVIRNEQ-E 58
TC G P+ +I W +D + +P + + VF I++V R D+ Y CV +N++
Sbjct: 546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
SA+ S E+++ P +I +F + G C G P I W LDG+ +
Sbjct: 606 SARGSLEVQVMVL--PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Score = 76.5 bits (188), Expect = 9e-18
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 23/132 (17%)
Query: 7 FTC---KYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKED-KGMYQC 51
C + + V+ +SW D + I V ED YQC
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217
Query: 52 VIRNE---QESAQASGELKL-----GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 103
++ + A+ + V F +T + C A G P
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277
Query: 104 PEISWYLDGKKL 115
P WY +
Sbjct: 278 PVFRWYKFIEGT 289
Score = 72.3 bits (177), Expect = 3e-16
Identities = 17/81 (20%), Positives = 28/81 (34%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
+ + R + ++ V S + + P +KE + + +C
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 97 IASGNPTPEISWYLDGKKLVN 117
ASGNP PEI W V
Sbjct: 62 KASGNPMPEIIWIRSDGTAVG 82
Score = 70.3 bits (172), Expect = 2e-15
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 19/127 (14%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVFRIDSVRKEDKGMYQCV 52
CK GNP+ I W++ DG V D P D ++ +Y C+
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWY 109
RN+ S + + + E + G + KC+ + +SW+
Sbjct: 119 ARNQFGSIISRDVHVRAVV--AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Query: 110 LDGKKLV 116
D ++
Sbjct: 177 TDEEENY 183
Score = 57.3 bits (138), Expect = 6e-11
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
CK +G P ++W K P + + +D+++K ++G Y C
Sbjct: 734 VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAI 793
Query: 55 NEQESAQASGEL 66
N S ++ +
Sbjct: 794 NGIGSGLSAVIM 805
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 118 bits (298), Expect = 4e-35
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
F G PV +SW +DG+ + P + I +V K + G Y N
Sbjct: 25 FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
A ++ EL + PP + T+ G + +G PTP + +Y DG ++
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
Query: 116 VNAE 119
++
Sbjct: 145 QSSL 148
Score = 64.0 bits (156), Expect = 5e-14
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
+ G P + + +DG + + + I ED G Y N
Sbjct: 123 LQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182
Query: 58 ESAQASGEL 66
A ++ EL
Sbjct: 183 GRATSTAEL 191
Score = 47.4 bits (113), Expect = 7e-08
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P + + G F+ SG P PE+SW+ DG+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST 50
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 113 bits (284), Expect = 4e-33
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 7 FTCKYEGN--PVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
C + + W K+G + + + +RI+ R ED G Y CV + +
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAP 81
Query: 61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+A+ +++ P I E N G + C + G P PE W +
Sbjct: 82 KANATIEV---KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI 137
Score = 56.0 bits (135), Expect = 4e-11
Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP--------------DHNEPVFRIDSVR-KEDKGMYQC 51
CK G P W K V N I +++ ED G Y+C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Query: 52 VIRNEQESAQASGELK 67
N SA S L+
Sbjct: 172 NATNSIGSASVSTVLR 187
Score = 41.8 bits (98), Expect = 8e-06
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKL 115
+ P I S + +C + + + W +G +L
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL 46
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 116 bits (291), Expect = 4e-33
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRKEDKGMYQCVIRNEQE 58
C + TI W G+ V + +I ++K D+G Y+C R
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 59 SAQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
++++ P ++S + T N G + C A G P P +SW DG+ + N
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239
Query: 118 AE 119
E
Sbjct: 240 EE 241
Score = 89.9 bits (223), Expect = 3e-23
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 6 FFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCV 52
FF C+ G+ K ISW +G+ + + + + I + +D G+Y+CV
Sbjct: 21 FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 53 IRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ E ++A+ +K+ F + K + + + G + C + P I W
Sbjct: 81 VTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK 137
Query: 112 GKKLVNAE 119
G+ ++ +
Sbjct: 138 GRDVILKK 145
Score = 58.3 bits (141), Expect = 2e-11
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
C +G P T+SW KDG+P+ + E + I +V K D+ Y C+ N
Sbjct: 216 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275
Query: 56 EQESAQASGEL 66
+ AS L
Sbjct: 276 KAGEQDASIHL 286
Score = 32.2 bits (73), Expect = 0.023
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLVNAE 119
+ S ++ G + +F C +G+ +ISW+ + ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN 48
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 118 bits (298), Expect = 9e-33
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C+ G+ +SW KDG+ + HN +I + G Y C N
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+A +S +L L PP L G + FKC +G +I+W D +++
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238
Score = 117 bits (294), Expect = 4e-32
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
CK +G P I+W K+ + +N I+ V D G Y C N
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
+ +S L + R PP D G F+C +G+ ++SWY DG+ L +
Sbjct: 85 GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD 144
Query: 118 AE 119
Sbjct: 145 DA 146
Score = 99.1 bits (247), Expect = 9e-26
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 13/123 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C G I+W KD + + N + V K D G Y C N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 58 ESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
S +L + +PP + + + ++C G+P ++ WY D ++
Sbjct: 277 GKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333
Query: 117 NAE 119
+
Sbjct: 334 ESS 336
Score = 98.7 bits (246), Expect = 1e-25
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
+ CK G+P + W KD + + ++ + ++ ED G Y C N
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
SA +S LK+ +PPV ++ G + + +C G P ++SW+ D ++L +
Sbjct: 371 GSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 427
Score = 97.2 bits (242), Expect = 6e-25
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGMYQCVIRNEQ 57
C+ +G P +SW KD + + + I +V D G YQC N+
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
S G + L PP + SD + G + G ++W+ D ++V
Sbjct: 464 GSDTCVGSITL---KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV 519
Score = 59.8 bits (145), Expect = 7e-12
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G +PP E G +C G P I+WY + KL +A
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP 50
Score = 56.7 bits (137), Expect = 9e-11
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
EG +++W KD + ++ ++ + G Y C I+NE
Sbjct: 497 LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNE 556
Query: 57 QESAQASGEL 66
+ + L
Sbjct: 557 AGTQECFATL 566
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 113 bits (283), Expect = 2e-32
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C GNP +ISW+K+G+ H + ++SV D+G Y CV+ N+
Sbjct: 35 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94
Query: 57 QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
S + + L + R P + +++T G + F C + P I W +
Sbjct: 95 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154
Query: 115 L 115
Sbjct: 155 N 155
Score = 52.2 bits (125), Expect = 2e-09
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 24/96 (25%)
Query: 7 FTCKYEGNPVKTISWMK----DGKPVPDHNEPVF-----------------RIDSVRKED 45
F CK + I W+K +G V P R+ +V + D
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193
Query: 46 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 81
G Y C N A+ + L + P +E
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSV---HGPRAAEEEL 226
Score = 44.5 bits (105), Expect = 1e-06
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ P + + F+C A+GNPTP ISW +G++
Sbjct: 13 YWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 112 bits (282), Expect = 1e-31
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEP--------VFRIDSVRKEDKGMYQCVIRNEQ 57
C GNP I+W KD PV P + +I+S + D+G Y+CV N
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187
Query: 58 -ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ L + + P + PG N C+A G+P P + W + L
Sbjct: 188 GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246
Score = 98.0 bits (244), Expect = 3e-26
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVR-KEDKGMYQCVIRN 55
F C+ G+P ++W K GK V V RI +R D+ +Y+CV +N
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56 EQESAQASGEL----KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+L + P I + + C ASGNP PEI+W+ D
Sbjct: 86 SVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
Query: 112 GKKL 115
+
Sbjct: 146 FLPV 149
Score = 62.9 bits (153), Expect = 3e-13
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---RIDSVRKEDKGMYQCVIRNEQESAQAS 63
TC G+P+ + WM+ + + ++ ++ +D Y CV + +A
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAV 284
Query: 64 GEL 66
++
Sbjct: 285 AQI 287
Score = 54.8 bits (132), Expect = 3e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP + D+ G F C A+G+P P ++W GKK+
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 108 bits (271), Expect = 4e-31
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
F+C+ G+P ISW ++GK + + + + ++ D G Y C N+
Sbjct: 24 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 83
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ L++ F P I + ++ T C A G P PEI+W
Sbjct: 84 DEKQAFLQV---FVQPHIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAVD 133
Score = 57.9 bits (140), Expect = 1e-11
Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 16/76 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------RIDSVRKEDKGMYQ 50
C EG P+ I+W + I V+ D G Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 51 CVIRNEQESAQASGEL 66
C + Q S L
Sbjct: 174 CEAASRIGGHQKSMYL 189
Score = 48.7 bits (116), Expect = 3e-08
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ + + T G F C ASG+P P ISW+ +GK +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 45
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 105 bits (264), Expect = 9e-30
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK + ++SV DKG Y CV+ NE
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 57 QESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
S + L + R P + ++ + G + F C + P I W +K
Sbjct: 99 YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Query: 115 L 115
Sbjct: 159 N 159
Score = 54.1 bits (130), Expect = 3e-10
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 20/93 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP--------------------VFRIDSVRKEDK 46
F CK + I W+K + P V + +V + D
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197
Query: 47 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 79
G Y C + N A S L + + P ++
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 44.9 bits (106), Expect = 8e-07
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 74 PPVIKESF----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P + + F+C A GNP P + W +GK+
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 105 bits (263), Expect = 1e-29
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN---EQESAQAS 63
C+ G+P W K K +P+ N ++V +D G Y C + N + S +
Sbjct: 38 LCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97
Query: 64 ----------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
G I + + L PG +C+A G+P P W+ +
Sbjct: 98 LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157
Query: 114 KL 115
L
Sbjct: 158 PL 159
Score = 80.3 bits (198), Expect = 5e-20
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
C G+P+ W K+ P+ + ++ + V E +G Y C + N+++S +
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Query: 67 ---KLGGRFDPPVIKESFSDE 84
P KE +D+
Sbjct: 198 IIIDELNNLGHPDNKEQTTDQ 218
Score = 49.9 bits (119), Expect = 1e-08
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
I + + + G C A+G+P + W+ K++
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 105 bits (262), Expect = 1e-28
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
F C GNP +ISW+K+G+ + ++SV D+G Y CV+ N+
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 57 QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
S + + L + R P + +++T G + F C + P I W
Sbjct: 203 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Score = 84.7 bits (209), Expect = 6e-21
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 28/137 (20%)
Query: 7 FTCKYE-GNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRN----- 55
+C G P+ W+KDG + ++ + ED G Y C R
Sbjct: 28 LSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVL 87
Query: 56 --------------EQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIA 98
+ E + E P + + F+C A
Sbjct: 88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA 147
Query: 99 SGNPTPEISWYLDGKKL 115
+GNPTP ISW +G++
Sbjct: 148 AGNPTPSISWLKNGREF 164
Score = 50.4 bits (120), Expect = 1e-08
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 22/82 (26%)
Query: 7 FTCKYEGNPVKTISWMK----DGKPVPDHNEPVF------------------RIDSVRKE 44
F CK + I W+K +G V P + +V E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 45 DKGMYQCVIRNEQESAQASGEL 66
D G Y C+ N + S L
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWL 323
Score = 43.8 bits (103), Expect = 2e-06
Identities = 11/47 (23%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAE 119
P G C G P W DG LV +E
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE 54
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 103 bits (259), Expect = 2e-27
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
FTC+ E T W + + +P + + +V + D Y+C +N S
Sbjct: 131 FTCEPETQDA-TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP-VS 188
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
A+ S + L + P S + + G N C A+ NP + SW+++G
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ 244
Score = 103 bits (259), Expect = 3e-27
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
TC+ E T W + + +P ++ + SV + D G Y+C I+NE
Sbjct: 308 ALTCEPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNEL- 365
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
S S + L + P S S PG N C A+ NP + SW +DG +
Sbjct: 366 SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH 424
Score = 96.9 bits (241), Expect = 7e-25
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+C NP SW +G E I ++ + G Y C N +
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQE--LFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
Query: 67 KLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ +PP S + + C T W+++ + L +
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSP 333
Score = 93.5 bits (232), Expect = 1e-23
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
FTC+ E T W +G+ +P + +V + D Y C I+N S
Sbjct: 487 FTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSV-S 544
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
A S + L + P S D + G N C ++ NP+P+ SW ++G +
Sbjct: 545 ANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH 602
Score = 86.5 bits (214), Expect = 3e-21
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+C NP SW+ DG E I ++ +++ G+Y C N +
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQANNSASGHSRTTVK 458
Query: 67 K-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P S + + + F C T W+++G+ L
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL 507
Score = 72.3 bits (177), Expect = 3e-16
Identities = 15/139 (10%), Positives = 37/139 (26%), Gaps = 28/139 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------------------IDSV 41
+ SW K + + + I ++
Sbjct: 19 LLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI 78
Query: 42 RKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
+ D G Y + + +A+G+ ++ P S + + + F C
Sbjct: 79 IQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-PKPSISSNNSKPVEDKDAVAFTCEPET 137
Query: 101 NPTPEISWYLDGKKLVNAE 119
W+++ + L +
Sbjct: 138 QD-ATYLWWVNNQSLPVSP 155
Score = 59.2 bits (143), Expect = 1e-11
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+C NP SW +G P + V I + + G Y C + N S
Sbjct: 579 LSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 31.1 bits (70), Expect = 0.066
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 88 PGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G SWY + N +
Sbjct: 13 EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQ 44
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 98.6 bits (246), Expect = 2e-27
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 15/123 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
+C+ G P+ I W + GK + D + + +ED+G+Y C+ NE
Sbjct: 27 LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEV 86
Query: 58 ESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
+ S +L L P + G + G P P ++W+ K
Sbjct: 87 GEVETSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL 143
Query: 115 LVN 117
L N
Sbjct: 144 LQN 146
Score = 60.5 bits (147), Expect = 9e-13
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSV-RKEDKGMYQCVIRNE 56
Y G PV ++W K + + + +V RK G Y+ + N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 57 QESAQASGELK 67
+ A +++
Sbjct: 183 FGTVDAILDVE 193
Score = 55.9 bits (135), Expect = 6e-11
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I++ D T G C G P P+I WY GK+L+ +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR 52
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 100 bits (251), Expect = 3e-27
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQE 58
C+ +P +SW+ + V ++ F I ++ K D+G+Y+C R E
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 59 SAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
++ + PP I + + T G F C ASG+P P ISW+ +GK +
Sbjct: 178 GEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 117 NAE 119
E
Sbjct: 237 ENE 239
Score = 97.6 bits (243), Expect = 4e-26
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 13/124 (10%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
FFTC G P + G+ + + I + ED G+Y+C +
Sbjct: 23 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 57 QESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ Q A+ L++ + +E S + G + C S +P P +SW +++
Sbjct: 83 KGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 139
Query: 116 VNAE 119
Sbjct: 140 TTIS 143
Score = 64.1 bits (156), Expect = 1e-13
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
F+C+ G+P ISW ++GK + ++ + + + ++ D G Y C N+
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 273
Query: 60 AQASGELKLGGRFDPPVIKE 79
+ L++ F
Sbjct: 274 DEKQAFLQV---FVQHHHHH 290
Score = 44.0 bits (104), Expect = 2e-06
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ S S L+ G + +F C A G P + G+K+++ +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ 49
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 97.9 bits (244), Expect = 4e-27
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNE 56
FFTC G P + G+ + I + ED G+Y+C +
Sbjct: 21 FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80
Query: 57 QESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ Q A+ L++ + +E S + G + C S +P P +SW +++
Sbjct: 81 KGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 137
Query: 116 VNAE 119
Sbjct: 138 TTIS 141
Score = 65.2 bits (159), Expect = 2e-14
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQE 58
C+ +P +SW+ + V ++ F +I ++ K D+G+Y+C R E
Sbjct: 116 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 175
Query: 59 SAQASGELKL 68
++ +
Sbjct: 176 GEIDFRDIIV 185
Score = 47.9 bits (114), Expect = 5e-08
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ S S L+ G + +F C A G P + G+K+++ +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ 47
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 97.9 bits (244), Expect = 4e-27
Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 13/124 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-----------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
CK G+P + W + GK + I SV +D +YQ N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 56 EQESAQASGEL--KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ S + L ++ + P E G K SG P P I+W
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 114 KLVN 117
+ N
Sbjct: 144 LIDN 147
Score = 60.5 bits (147), Expect = 1e-12
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
+ G P I+W K + + + V ++D G Y +N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 57 QESAQASGEL 66
Q + EL
Sbjct: 184 FGIDQKTVEL 193
Score = 50.5 bits (121), Expect = 7e-09
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P KE + + N C +G+P P + WY GK+++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 99.8 bits (249), Expect = 5e-27
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
F C G I+W KD + + + V K D G Y C N
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84
Query: 58 ESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
S +L + +PP + + + ++C G+P ++ WY D ++
Sbjct: 85 GKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 140
Score = 99.4 bits (248), Expect = 6e-27
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
+ CK G+P + W KD + + V + ++ ED G Y C N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
SA +S LK+ +PPV ++ G + + +C G P ++SW+ D ++L +
Sbjct: 179 GSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Score = 65.9 bits (161), Expect = 3e-14
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C+ +G P +SW KD + + ++ I +V D G YQC N+
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 58 ESAQASGEL 66
S G +
Sbjct: 272 GSYTCVGSI 280
Score = 51.7 bits (124), Expect = 4e-09
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G PP L G + FKC +G +I+W D +++
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG 50
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 101 bits (252), Expect = 9e-27
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
C G P + +W++ + + ++ I +V +D G Y CV+ + E+
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN 300
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
AS EL + PP S+ + F+C SG P P ++W +G ++
Sbjct: 301 ISASAELTV---LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP 355
Score = 92.2 bits (229), Expect = 1e-23
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQ 57
C+ G+P+ TI W K+ + + P + I ++ D G+Y+C RN
Sbjct: 141 LKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200
Query: 58 -ESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
E+++ G + S+ G + +C SG P P +W +
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260
Query: 114 KL 115
+
Sbjct: 261 VI 262
Score = 86.8 bits (215), Expect = 1e-21
Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 15/124 (12%)
Query: 6 FFTCKYEGN-PVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQC 51
C E + V I W KDG + + + K D+G+YQC
Sbjct: 40 LLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99
Query: 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ S K+ P T G KC G+P P I W +
Sbjct: 100 EASLGDSGSIISRTAKVMVAG-PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN 158
Query: 112 GKKL 115
+ L
Sbjct: 159 QQDL 162
Score = 67.9 bits (166), Expect = 1e-14
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
F C G PV T++WMK+G V RI V K D+G YQCV NE +A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 61 QASGELK 67
Q+S +L
Sbjct: 392 QSSAQLI 398
Score = 57.2 bits (138), Expect = 6e-11
Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 54 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDG 112
R E + GGR SD G N C A + P I W DG
Sbjct: 2 RWGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60
Query: 113 KKLVNAE 119
L
Sbjct: 61 LILALGM 67
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 96.8 bits (241), Expect = 2e-26
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
F C+ G+P I W K GK V D + V RI +R D+ +Y+CV N
Sbjct: 26 FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 56 EQESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
S L + P I + + C ASGNP PEI+W+ D
Sbjct: 86 NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
Query: 112 GKKL 115
+
Sbjct: 146 FLPV 149
Score = 57.1 bits (138), Expect = 2e-11
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
C GNP I+W KD PV N +I+ + D+G Y+CV
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
Query: 55 N---EQESAQAS 63
N + SA A+
Sbjct: 188 NSAGTRYSAPAN 199
Score = 52.5 bits (126), Expect = 1e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP + D+T G F C A+G+P P+I W GKK+
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV 47
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 96.0 bits (239), Expect = 2e-26
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE--------PVFRIDSVRKEDKGMYQCVIRNE-Q 57
F C E P ISW ++ + + + I SV D G+Y C N
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ ++ G L++ P I + + G C GNP P +SW L
Sbjct: 87 GAVESCGALQV---KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Score = 58.6 bits (142), Expect = 5e-12
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
C GNP ++SW+K + + RI +V+KED G Y+CV +N +A
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 61 QAS 63
+
Sbjct: 180 YSK 182
Score = 50.9 bits (122), Expect = 4e-09
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PVI F C P PEISW + + +
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD 52
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 99.5 bits (248), Expect = 3e-26
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
C GNPV I W K +EP+ I +V ED+G Y+C N +
Sbjct: 227 LECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
G + + P + +D + G + + C+ASG P P + W DG+ L
Sbjct: 287 GRIII---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335
Score = 87.6 bits (217), Expect = 7e-22
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVP-DHNEPVF--------RIDSVRKEDKGMYQCVIRNE 56
FTC P + W+ + P + F I D G Y C +
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 57 QESAQASGELKLG---------GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
+ S K ++ P + + +D G +C A GNP P+I
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 108 WYLDGKKL 115
W
Sbjct: 241 WRKLDGSQ 248
Score = 81.1 bits (200), Expect = 1e-19
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS--------VRKEDKGMYQCVIRNEQE 58
TC+ NP T W +G + + +R+ + V+ +D G YQCV N +
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARG 86
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN 117
+ S E L F E + G F C P W L+
Sbjct: 87 TV-VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI 145
Query: 118 AE 119
Sbjct: 146 PA 147
Score = 76.1 bits (187), Expect = 1e-17
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
++C G P + W++DG+P+ + R + ED GMYQCV N+ +
Sbjct: 314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 62 ASGELK 67
AS EL
Sbjct: 374 ASAELT 379
Score = 50.6 bits (121), Expect = 1e-08
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 71 RFDPPVIKESFSDETLNPGPNY---YFKCIASGNPTPEISWYLDGKKL 115
R PV +E + G C A NP W ++G +L
Sbjct: 1 RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL 48
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 99.6 bits (248), Expect = 4e-26
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
C G P I+W K G +P ++ RI +V +ED G Y C+ N+ S
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Query: 61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + +++ P + + L PG + C A+GNP P + W ++G+ L +A
Sbjct: 302 RHTISVRV---KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP 357
Score = 79.5 bits (196), Expect = 7e-19
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED-KGMYQCVIRNEQ 57
C G P I WM ++ V +V +D + Y C R
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHF 195
Query: 58 -ESAQASGELKL------GGRFDPPVI---KESFSDETLNPGPNYYFKCIASGNPTPEIS 107
+ Q L G P + + S + + G + +CIASG PTP+I+
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255
Query: 108 WYLDGKKL 115
WY G L
Sbjct: 256 WYKKGGDL 263
Score = 78.4 bits (193), Expect = 2e-18
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCV 52
C+ +GNP + W ++ + +P + +E +G YQC
Sbjct: 36 LIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCF 95
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLD 111
RN+ +A S ++L P KE+ + G +C G P+P I W
Sbjct: 96 ARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS 154
Query: 112 GKKLV 116
+ +
Sbjct: 155 SMEPI 159
Score = 69.9 bits (171), Expect = 2e-15
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQE 58
C+ GNP T+ WM +G+P+ R + + +YQC NE
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391
Query: 59 SAQASGELK 67
A+ +
Sbjct: 392 YLLANAFVS 400
Score = 59.9 bits (145), Expect = 5e-12
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P + K+S D ++P N +C A GNP P W + + A+
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 98.4 bits (245), Expect = 7e-26
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESA 60
C GNPV TI W + DGKP+ I + ++ED G Y+CV N +
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN 284
Query: 61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
A G+L + P + +D + + +++C A+G P P W +G L
Sbjct: 285 VAKGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Score = 86.4 bits (214), Expect = 2e-21
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 16/127 (12%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
C + + +W+ + P N I V K D G Y CV+ N
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181
Query: 59 SAQASGEL--------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
+ + G + G ++P + + G +C A GNP P I W
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR 241
Query: 111 DGKKLVN 117
K +
Sbjct: 242 ADGKPIA 248
Score = 81.4 bits (201), Expect = 1e-19
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS--------VRKEDKGMYQCVIRNEQE 58
+C+ +GNP I W +G V + + + + +D G YQC+ N
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 87
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV 116
+ S E KL + + S ++ G C + +W +
Sbjct: 88 TI-VSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY 145
Score = 74.9 bits (184), Expect = 2e-17
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
+ CK G P T W+K+G P+ + I V D GMYQCV N+
Sbjct: 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIF 374
Query: 62 ASGELK 67
+S EL
Sbjct: 375 SSAELS 380
Score = 46.8 bits (111), Expect = 2e-07
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 70 GRFDPPVIKESFSDET---LNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
G PV + S + C GNP P I W L+G +
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV 49
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 98.1 bits (244), Expect = 9e-26
Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
C +G P + W K + V I ED G Y CV+ N
Sbjct: 232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
L + P K +T++ G F C +GNP +SW DGK +
Sbjct: 292 SVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 348
Query: 116 VN 117
+
Sbjct: 349 GH 350
Score = 86.1 bits (213), Expect = 3e-21
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
FTC+Y GNP+KT+SWMKDGK + V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAIGHSES-VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Query: 67 KLG 69
KLG
Sbjct: 386 KLG 388
Score = 68.8 bits (168), Expect = 4e-15
Identities = 22/131 (16%), Positives = 31/131 (23%), Gaps = 22/131 (16%)
Query: 7 FTCK---YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKED-KGMYQC 51
C + + V+ +SW D + I V ED YQC
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182
Query: 52 VIRNEQ-ESAQASGELKL------GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 104
++ + S P L C A G P P
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242
Query: 105 EISWYLDGKKL 115
WY +
Sbjct: 243 SFRWYKFIEGT 253
Score = 67.7 bits (165), Expect = 9e-15
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVFRIDSVRKEDKGMYQCV 52
CK GNP+ I W++ DG V D P D ++ +Y C+
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWY 109
RN+ S S ++ + + + E + G + KC+ + +SW+
Sbjct: 84 ARNQFGSI-ISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 141
Query: 110 LDGKKLV 116
D ++
Sbjct: 142 TDEEENY 148
Score = 48.8 bits (116), Expect = 5e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 74 PPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
PV + ++ + +C ASGNP PEI W V
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG 47
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 93.8 bits (233), Expect = 2e-25
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 18/127 (14%)
Query: 7 FTCKYEGNPVK--TISWMKDGKPVP-DHNEPVF--------RIDSVRKEDKGMYQCVIRN 55
C + + W+ + PV ++ F I +V DKG Y C + +
Sbjct: 28 LLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS 87
Query: 56 EQESAQASGEL-------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ + + + P I F D G N +C A GNP P+I W
Sbjct: 88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW 147
Query: 109 YLDGKKL 115
+ +
Sbjct: 148 RKVLEPM 154
Score = 67.6 bits (165), Expect = 2e-15
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
C GNPV I W K +P+P + V +I +++ ED+G+Y+C N + +
Sbjct: 133 LECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK 192
Query: 62 ASGEL 66
+
Sbjct: 193 HQARI 197
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 93.3 bits (232), Expect = 2e-25
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
C EG I W+KDG V + ++ + SV + D G Y C + +
Sbjct: 22 LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81
Query: 56 EQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
E+ L + G P D + P + C A G P P I W+
Sbjct: 82 GGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTT 138
Query: 114 KL 115
K+
Sbjct: 139 KI 140
Score = 54.8 bits (132), Expect = 1e-10
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
+C+ G P TI W + + ++ M+ C N + A +
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
Score = 48.6 bits (116), Expect = 2e-08
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + T++ G C G P+I W DG + N +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD 47
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 92.9 bits (231), Expect = 3e-25
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNE-- 56
C+ +P +SW+ + V ++ F I ++ K D+G+Y+C R E
Sbjct: 22 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81
Query: 57 QESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
E + + PP I + + T G F C ASG+P P ISW+ +GK
Sbjct: 82 GEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138
Query: 115 LVNAE 119
+ E
Sbjct: 139 IEENE 143
Score = 63.3 bits (154), Expect = 9e-14
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
F+C+ G+P ISW ++GK + ++ + + + ++ D G Y C N+
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 177
Query: 60 AQASGELK 67
+ L+
Sbjct: 178 DEKQAFLQ 185
Score = 52.1 bits (125), Expect = 1e-09
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
+E S + G + C S +P P +SW +++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI 46
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 92.6 bits (230), Expect = 6e-25
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 4 LKFFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIR 54
++ ++ ++W +G + + +I+ DKG Y +
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 55 NEQESAQASGELK------------------LGGRFDPPVIKESFSDETLNPGPNYYFKC 96
+ + Q + +L + + V+ T+ G C
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 139
Query: 97 IASGNPTPEISWYLDGKKLVNAE 119
G+P PE+SW + K L +
Sbjct: 140 NVWGDPPPEVSWLKNEKALAQTD 162
Score = 61.0 bits (148), Expect = 7e-13
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
TC G+P +SW+K+ K + F I+ V D G Y V++N+
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 57 QESAQASGELK 67
S + +
Sbjct: 197 YGSETSDFTVS 207
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 93.1 bits (231), Expect = 4e-24
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
++ ++W +G + + +I+ DKG Y + +
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186
Query: 57 QESAQASGELK------------------LGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
+ Q + +L + + V+ T+ G C
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246
Query: 99 SGNPTPEISWYLDGKKLVNAE 119
G+P PE+SW + K L + +
Sbjct: 247 WGDPPPEVSWLKNEKALASDD 267
Score = 83.4 bits (206), Expect = 1e-20
Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 21/131 (16%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVP-------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
CK +T I W KD + + I K+D G+Y+ ++++++
Sbjct: 26 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG----------NPTPEISW 108
++ +L + + + + A G +++W
Sbjct: 86 KDKSRLKLVD---EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW 142
Query: 109 YLDGKKLVNAE 119
+G + ++
Sbjct: 143 SHNGSAIRYSD 153
Score = 60.7 bits (147), Expect = 3e-12
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
TC G+P +SW+K+ K + F I+ V D G Y V++N+
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 57 QESAQASGELK 67
S + +
Sbjct: 302 YGSETSDFTVS 312
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 93.2 bits (231), Expect = 1e-23
Identities = 12/117 (10%), Positives = 30/117 (25%), Gaps = 12/117 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
+ + W+ + + I + + G Y I++E
Sbjct: 68 LQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ + + + + + CI+ P P + W L +
Sbjct: 128 NYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQG 180
Score = 81.7 bits (201), Expect = 2e-19
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 16/108 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
F+ +++ P +W K P + + K G Y N+
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405
Query: 62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
L + P + S + C + G P P +W
Sbjct: 406 KMFTLNI---RRKPQVLAEASASQAS--------CFSDGYPLPSWTWK 442
Score = 80.1 bits (197), Expect = 4e-19
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 24/127 (18%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR---------------IDSVRKEDKGMYQ 50
CK N ++W + K + + N + SV + D G Y
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 51 CVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISW 108
C S + + + I S D ++ + F P +W
Sbjct: 307 CSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360
Query: 109 YLDGKKL 115
K
Sbjct: 361 TFSRKSF 367
Score = 78.2 bits (192), Expect = 2e-18
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 10/119 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCVIRNEQESAQ 61
C E P + W+ E + + + +C RNE
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Query: 62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVNAE 119
+ + P + L G + +C A N ++W L+ K L
Sbjct: 219 -TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273
Score = 52.0 bits (124), Expect = 4e-09
Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 13/88 (14%)
Query: 41 VRKEDKGMYQCVIRNEQES-------------AQASGELKLGGRFDPPVIKESFSDETLN 87
+D + +CV+ N + + +++ +L R + ++
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 88 PGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ + + W L
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSL 89
Score = 47.4 bits (112), Expect = 1e-07
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 22/102 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------------RIDSVRKEDK 46
+C +G P+ + +W K P+ E + ++
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486
Query: 47 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 88
+ +C N ++ + L G P I++ + +
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGP--FPFIQDGGTKHHHHH 526
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 93.3 bits (231), Expect = 1e-23
Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
KY G P I W K+G P+ V I V + D G Y ++ N +
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQ 409
Query: 63 SGELKLGGRFDPPVIKESFSD---ETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLVNA 118
S + L PP I E ++ G C P P I WY ++
Sbjct: 410 SHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECAN 468
Query: 119 E 119
E
Sbjct: 469 E 469
Score = 87.5 bits (216), Expect = 1e-21
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 30/141 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-----------------------------PDHNEPVFR 37
C + + + ++W K G ++ +
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKC 96
+ + +D+G Y C+ ++ + + +L P I + ++T + G + C
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688
Query: 97 IASGNPTPEISWYLDGKKLVN 117
ASGNP P+I W+ D + LV
Sbjct: 689 TASGNPPPQIMWFKDNETLVE 709
Score = 84.4 bits (208), Expect = 2e-20
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 19/128 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG 47
C I + + ++ + ID V + D+G
Sbjct: 244 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 303
Query: 48 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
+Y C + + + S +++ + S G G P PEI
Sbjct: 304 LYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363
Query: 108 WYLDGKKL 115
WY +G L
Sbjct: 364 WYKNGIPL 371
Score = 82.9 bits (204), Expect = 6e-20
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 9/116 (7%)
Query: 7 FTCKYEGNPV--------KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
C + + ++ DG + ++ F I S GM C + E
Sbjct: 148 IPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 207
Query: 59 SAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
S Q+ + + + V+ L+ G C A I + +
Sbjct: 208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP 263
Score = 63.6 bits (154), Expect = 3e-13
Identities = 18/156 (11%), Positives = 32/156 (20%), Gaps = 47/156 (30%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVP------------------------------------ 29
TC P I W +
Sbjct: 443 LTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502
Query: 30 ------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD 83
N+ V + +Y+C N+ + + P I D
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV---TRGPEI-TLQPD 558
Query: 84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ C A + ++WY G + +
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIH 594
Score = 62.5 bits (151), Expect = 7e-13
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
+C GNP I W KD + + + + V I VRKED+G+Y C +
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC 745
Query: 60 AQASGELKLGGRFDPPVI 77
A+ + G + +
Sbjct: 746 AKVEAFFIIEGAQEKTNL 763
Score = 58.6 bits (141), Expect = 2e-11
Identities = 16/115 (13%), Positives = 25/115 (21%), Gaps = 14/115 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNE----------PVFRIDSVRKEDKGMYQCVIRNE 56
TC G W + E I V D G Y+C R
Sbjct: 51 ITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108
Query: 57 QESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
++ ++ + T N C+ S +
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA 163
Score = 53.6 bits (128), Expect = 1e-09
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
+ S ++ CV S L D P + T+ C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL------DLPRLSIQKDILTIKANTTLQITC- 53
Query: 98 ASGNPTPEISWYLDGKKL 115
G + W +
Sbjct: 54 -RGQRDLDWLWPNNQSGS 70
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 88.7 bits (220), Expect = 2e-23
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 6 FFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCV 52
FF C+ G+ K ISW +G+ + + + + I + +D G+Y+CV
Sbjct: 21 FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 53 IRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
+ E ++A+ +K+ F + K + + + G + C + P I W
Sbjct: 81 VTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK 137
Query: 112 GKKLV 116
G+ ++
Sbjct: 138 GRDVI 142
Score = 62.1 bits (151), Expect = 2e-13
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQE 58
C + TI W G+ V + F +I ++K D+G Y+C R
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 59 SAQASGELKL 68
++++
Sbjct: 180 GEINFKDIQV 189
Score = 40.6 bits (95), Expect = 2e-05
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVNA 118
+ S ++ G + +F C +G+ +ISW+ + ++
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP 47
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 87.7 bits (217), Expect = 5e-23
Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 19/127 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKGMY 49
+C Y G + W D SV +ED G Y
Sbjct: 24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83
Query: 50 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISW 108
C++ E ++ ++KL PP + G C G+P E +W
Sbjct: 84 TCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Query: 109 YLDGKKL 115
+ DG +
Sbjct: 143 FKDGIVM 149
Score = 55.4 bits (133), Expect = 1e-10
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF----------------RIDSVRKEDKGMY 49
TC +G+P +W KDG +P + + D + D G Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 50 QCVIRNEQESAQASGELK 67
C RN + S ++
Sbjct: 187 SCEARNGYGTPMTSNAVR 204
Score = 45.0 bits (106), Expect = 7e-07
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
+ S + + C SG +P + W D
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTR 47
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 87.5 bits (217), Expect = 6e-23
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRK-EDKGMYQCVIR 54
F C G+P +I W K+GK V + RI+ VR D Y+CV
Sbjct: 26 FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85
Query: 55 NEQ-ESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
N ++ A L + PVI + + G C A GNPTP I W
Sbjct: 86 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145
Query: 110 LDGKKL 115
+ K+
Sbjct: 146 KNQTKV 151
Score = 59.0 bits (143), Expect = 5e-12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
TCK GNP I W+K+ V + P + +I++ R+ED+G Y+CV N +
Sbjct: 130 MTCKAIGNPTPNIYWIKNQTKVD-MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188
Query: 60 AQASG 64
+
Sbjct: 189 EHSKA 193
Score = 53.3 bits (128), Expect = 7e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP I ++ + G F C A G+P P I W +GKK+
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV 47
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 88.7 bits (220), Expect = 1e-22
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 13/122 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCVIRN 55
CK G+P + W + GK + I SV +D +YQ N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 56 EQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ S + L++ + P E G K SG P P I+W
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 114 KL 115
+
Sbjct: 144 LI 145
Score = 60.2 bits (146), Expect = 3e-12
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
+ G P I+W K + ++ + + V ++D G Y +N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 57 QESAQASGELKLGGRFDPP 75
Q + EL + DPP
Sbjct: 184 FGIDQKTVELDVADVPDPP 202
Score = 47.4 bits (113), Expect = 1e-07
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
P KE + + N C +G+P P + WY GK+++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 88.6 bits (219), Expect = 2e-22
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 9 CKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
K E N + + W KD KP+ N + + +V ++ +G Y C Q
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190
Query: 63 SG------ELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ PVI ++ ++ G C +G + W +G +
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250
Score = 83.6 bits (206), Expect = 1e-20
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 5 KFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIR 54
C N K TI+W KD P E R + ED G Y CV+R
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 82
Query: 55 NEQESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKC------IASGNPTPEIS 107
N + K + ++ + L + C N P++
Sbjct: 83 NSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142
Query: 108 WYLDGKKL 115
WY D K L
Sbjct: 143 WYKDCKPL 150
Score = 50.1 bits (119), Expect = 1e-08
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 22/84 (26%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP---------------------VFRIDSVRKED 45
C G W +G + + + V I +
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288
Query: 46 -KGMYQCVIRNEQESAQASGELKL 68
K + C +N A +L
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 89.2 bits (221), Expect = 2e-22
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
C Y NP+ ++ K+GK V + E + ED+G+Y C + N
Sbjct: 232 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN 291
Query: 56 EQESAQA-SGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGK 113
Q S +L + P ++ + G + C +G P P + W + K
Sbjct: 292 GVGKPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348
Query: 114 KL 115
L
Sbjct: 349 PL 350
Score = 88.0 bits (218), Expect = 5e-22
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 25/134 (18%)
Query: 7 FTCKY-EGNPVKTISWMKDGKPVPDHNEPVF-------------RIDSVRKEDK---GMY 49
C P I+W K + + V KED Y
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY 179
Query: 50 QCVIRN---EQESAQASGELKL-----GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 101
C +N ++E E+K G PV + D G C+ N
Sbjct: 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSN 239
Query: 102 PTPEISWYLDGKKL 115
P +++ +GK +
Sbjct: 240 PMGYPNYFKNGKDV 253
Score = 77.3 bits (190), Expect = 5e-18
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 14/120 (11%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVPDHNEPV--------FRIDSVRKEDKGMYQCVIRNEQ 57
C EGN SW KDGK + D+G YQC
Sbjct: 26 LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 85
Query: 58 -ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKL 115
++ + ++T G + C + + P P I+W
Sbjct: 86 GVASSRVISFRKTY---LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA 142
Score = 73.4 bits (180), Expect = 1e-16
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----RIDSVRKEDKGMYQCVIRNEQESAQA 62
CK G P + W + KP+ V I V+ DKG Y C NE
Sbjct: 329 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 63 SGELK 67
++
Sbjct: 389 ETLVQ 393
Score = 51.4 bits (123), Expect = 5e-09
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
PV+K+ ++ +CI GN + SW DGK
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY 48
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 89.3 bits (221), Expect = 2e-22
Identities = 12/117 (10%), Positives = 30/117 (25%), Gaps = 12/117 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
+ + W+ + + I + + G Y I++E
Sbjct: 68 LQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ + + + + + CI+ P P + W L +
Sbjct: 128 NYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQG 180
Score = 85.9 bits (212), Expect = 3e-21
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 10/119 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCVIRNEQESAQ 61
C E P + W+ E + + + +C RNE
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Query: 62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAE 119
+ + L G + +C A N ++W L+ K L
Sbjct: 219 TRLFT----IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273
Score = 77.0 bits (189), Expect = 5e-18
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 24/128 (18%)
Query: 6 FFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF---------------RIDSVRKEDKGMY 49
+ CK N ++W + K + + N + SV + D G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 50 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL--NPGPNYYFKCIASGNPTPEIS 107
C S + + + I + S E + + F P +
Sbjct: 306 TCSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Query: 108 WYLDGKKL 115
W K
Sbjct: 360 WTFSRKSF 367
Score = 59.7 bits (144), Expect = 6e-12
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
F+ +++ P +W K P N K G Y N+
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405
Query: 62 ASGELK 67
L
Sbjct: 406 KMFTLN 411
Score = 53.9 bits (129), Expect = 7e-10
Identities = 6/79 (7%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
+ + Y V + ++ L + + E+ + ++ + +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEA-AAVEVDVSASITLQV 70
Query: 97 IASGNPTPEISWYLDGKKL 115
+ W L
Sbjct: 71 LVDAPGNISCLWVFKHSSL 89
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 88.7 bits (220), Expect = 3e-22
Identities = 24/125 (19%), Positives = 32/125 (25%), Gaps = 19/125 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------RIDSVRKEDKGMYQ 50
C EG P+ I+W + I V+ D G Y
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 51 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
C + Q S L + P + + G C NP I W
Sbjct: 80 CEAASRIGGHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 111 DGKKL 115
D L
Sbjct: 137 DKLVL 141
Score = 62.9 bits (153), Expect = 5e-13
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
+C + NP +I W +D +P N + I D G Y C N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 56 EQESAQASGELKLGGRFDPP 75
+ L L P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199
Score = 38.2 bits (89), Expect = 2e-04
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + +ET C A G P PEI+W E
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 45
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 84.5 bits (209), Expect = 1e-21
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQCVI 53
CK EG P TI W KDG+PV + + R + +++D G Y CV
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88
Query: 54 RNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEISWYLD 111
+N ++ L++ + D + G +C G P P + W D
Sbjct: 89 KNRVGQAVSRHASLQI--AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD 146
Query: 112 GKKLVNAE 119
G L + +
Sbjct: 147 GVPLDDLK 154
Score = 53.7 bits (129), Expect = 4e-10
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
L G++ P I E +D + C G P P I W+ DG+ + E
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54
Score = 53.3 bits (128), Expect = 5e-10
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 7 FTC-KYEGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
C +G P T+ W+KDG P+ D F I +V D+G Y+C
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187
Query: 52 VIRNEQESAQAS 63
+ +N + ++S
Sbjct: 188 IAQNLVGTRESS 199
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 85.9 bits (212), Expect = 2e-21
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 17/127 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNE-- 56
+ I W KD + NE + V ED G Y+CV+
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHE 204
Query: 57 --QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKC---IASGNPTPEISWY 109
Q + S EL++ + + PVI + + G C + +G P + W+
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
Query: 110 LDGKKLV 116
+
Sbjct: 265 TANDTHI 271
Score = 82.0 bits (202), Expect = 5e-20
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 15/123 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
+ +P ++W K+ E R + +ED G Y C RN
Sbjct: 45 YWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS 104
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPN-----YYFKCIASGNPTPEISWYLDG 112
+ S EL++ + + L + +I WY D
Sbjct: 105 YCDKMSIELRVFEN-TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS 163
Query: 113 KKL 115
L
Sbjct: 164 LLL 166
Score = 40.8 bits (95), Expect = 2e-05
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 26/87 (29%)
Query: 7 FTCK---YEGNPVKTISWMKDGKPVPDHNEPVFR----------------------IDSV 41
CK G P+ T+ W + P R D V
Sbjct: 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305
Query: 42 RKEDKGM-YQCVIRNEQESAQASGELK 67
+ED M ++CV+ N +K
Sbjct: 306 TREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 37.4 bits (86), Expect = 4e-04
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 90 PNYYFKCIASGNPTPEISWYLDGKKL 115
P + AS +P ++W+ +
Sbjct: 41 PQVPYWLWASVSPRINLTWHKNDSAR 66
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 79.8 bits (197), Expect = 4e-21
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
TC+ P I WMKDG P+P PV + + +D+G Y CV + Q S +
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
Query: 67 KL 68
+
Sbjct: 90 SI 91
Score = 46.6 bits (111), Expect = 3e-08
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ + + PG C P+P+I W DG L
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 82.3 bits (203), Expect = 8e-21
Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 19/131 (14%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDHNE----------------PVFRIDSVRKEDKGMY 49
TC Y G + W G SV ++D G Y
Sbjct: 21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80
Query: 50 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISW 108
C++ E + L PP ++ G C G+P E SW
Sbjct: 81 TCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139
Query: 109 YLDGKKLVNAE 119
+ DG ++ A+
Sbjct: 140 FKDGISMLTAD 150
Score = 55.4 bits (133), Expect = 1e-10
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR-----------------IDSVRKEDKGM 48
TC ++G+P SW KDG + + R D V D G
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183
Query: 49 YQCVIRNEQESAQASGELKL 68
Y C +N +A S +
Sbjct: 184 YYCQAQNGYGTAMRSEAAHM 203
Score = 41.1 bits (96), Expect = 2e-05
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + SD + + C SG +P + W
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV 46
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 81.1 bits (200), Expect = 1e-20
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 26/135 (19%)
Query: 7 FTCKYE--GNPVKTISWMKDGKPVPDHNEP------------------VFRIDSVRKEDK 46
C+ + G P + W++DG+ + + RI S++ D
Sbjct: 22 LRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80
Query: 47 GMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP- 104
G YQC++ ++ G + L G P E D T+ + C A G P P
Sbjct: 81 GQYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPV 137
Query: 105 EISWYLDGKKLVNAE 119
++ W D L A
Sbjct: 138 DLLWLQDAVPLATAP 152
Score = 53.0 bits (127), Expect = 8e-10
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
+C+ +G P + W++D P+ + P + + C N + +
Sbjct: 126 LSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSR 185
Score = 38.0 bits (88), Expect = 2e-04
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
+ + + T G +C PE+ W DG+ L A+
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD 48
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 78.1 bits (193), Expect = 1e-20
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
C G+P+ W K+ P+ + ++ + V E +G Y C + N+++S +
Sbjct: 23 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 50.4 bits (121), Expect = 1e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
I + + L PG +C+A G+P P W+ + L +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 47
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 84.3 bits (208), Expect = 2e-20
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 24/126 (19%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
+YE P + W+ + D E + ++ + G Y
Sbjct: 333 LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF 392
Query: 52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
++ N +A + + + P I T + N +C+A+G P P I WY
Sbjct: 393 LVSNSDVNAAIAFNVYV---NTKPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFC 443
Query: 112 GKKLVN 117
Sbjct: 444 PGTEQR 449
Score = 81.6 bits (201), Expect = 2e-19
Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
TC + +W ++ + I S R D G++ C
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290
Query: 52 VIRNEQESAQASGELKLGGRFDPPVIK---ESFSDETLNPGPNYYFKCIASGNPTPE-IS 107
N SA + L++ D I + +N G N P PE
Sbjct: 291 YANNTFGSANVTTTLEV---VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347
Query: 108 WYLDGKKLVN 117
W + +
Sbjct: 348 WIYMNRTFTD 357
Score = 72.8 bits (178), Expect = 2e-16
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 6 FFTCKYEGNPVKTISWMK-DGKPVPD------HNEPVFRIDSVRK-EDKGMYQCVIRNEQ 57
C V S GKP+P + I SV++ + C + E
Sbjct: 133 LVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG 192
Query: 58 ESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
+S S + L PV+ S + L G + C + +W +
Sbjct: 193 KS-VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251
Query: 114 KLVNAE 119
+ E
Sbjct: 252 QTKLQE 257
Score = 64.7 bits (157), Expect = 1e-13
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN-EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C G + W + + N + + + + G Y C ++ +
Sbjct: 56 LLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN-----S 106
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+ + R DP + + +C + S K +
Sbjct: 107 IYVFVR-DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156
Score = 54.7 bits (131), Expect = 4e-10
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 42 RKEDKGMYQCVI----RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
+ CV+ R + S+Q S G PP I SD + G C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSP---GEPSPPSIHPGKSDLIVRVGDEIRLLCT 59
Query: 98 ASGNPTPEISWYLDGKKLVN 117
G + W + N
Sbjct: 60 DPG----FVKWTFEILDETN 75
Score = 46.2 bits (109), Expect = 4e-07
Identities = 14/93 (15%), Positives = 19/93 (20%), Gaps = 24/93 (25%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------------------RIDSVRKED 45
C G P TI W + V IDS +
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485
Query: 46 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIK 78
G +C N+ A +
Sbjct: 486 NGTVECKAYNDVGKTSAYFNFAF---KGNNKEQ 515
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 78.9 bits (194), Expect = 1e-19
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 7 FTCKYEGNPVKTIS--WMKDGKPVPDHNEP--VFRIDSVRKEDKGMYQCVIRNEQESAQA 62
TC + + W+K G + + P + G Y CV E A
Sbjct: 18 LTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE-PMGTA 76
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWY 109
+ +L PP +K S E +N G C + P + +WY
Sbjct: 77 NIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119
Score = 44.6 bits (105), Expect = 7e-07
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPV---------------PDHNEPVFRIDSV-RKEDKGMY 49
CK E P V +W K I+++ + D G Y
Sbjct: 103 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 162
Query: 50 QCVIRNEQESAQASGELK 67
+C + + S QA L+
Sbjct: 163 RCNGTSSKGSDQAIITLR 180
Score = 32.7 bits (74), Expect = 0.017
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 2/33 (6%)
Query: 85 TLNPGPNYYFKCIASGNPTPEIS--WYLDGKKL 115
+ G C + + T W G L
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL 41
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 77.9 bits (192), Expect = 4e-19
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR---------------IDSVRKEDKGMYQ 50
CK EG P TI W K G+ V D ++P + D+G+Y
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 51 CVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISW 108
CV RN E+ L++ +++ SD + G +C G+P P ISW
Sbjct: 89 CVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISW 146
Query: 109 YLDGKKL 115
DG L
Sbjct: 147 KKDGSPL 153
Score = 54.8 bits (132), Expect = 2e-10
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKEDKGMYQCVIRNEQES 59
C+ G+P TISW KDG P+ D +E + I RK D G Y CV N
Sbjct: 131 MECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGE 190
Query: 60 AQAS 63
++
Sbjct: 191 RESE 194
Score = 53.3 bits (128), Expect = 6e-10
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP I E SD ++ G C A G PTP I WY G+++ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 79.5 bits (195), Expect = 5e-19
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
+ + TI+W + + N + + G Y CV+ +
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 62 ----ASGELKLGGR--FDPPVIKESFSDETL---NPGPNYYFKCIA----SGNPTPEISW 108
+ +K+ G P + S +D + PG C + E+ W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264
Query: 109 YLDGKKL 115
+DGKK
Sbjct: 265 TIDGKKP 271
Score = 66.0 bits (160), Expect = 4e-14
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 20/131 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
F + T+ W + FR D G Y C+
Sbjct: 38 FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCM 97
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCI-----ASGNPTPEI 106
+RN ++ + L++ + + C + P I
Sbjct: 98 LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI 157
Query: 107 SWYLDGKKLVN 117
+WY+ K+ N
Sbjct: 158 TWYMGCYKIQN 168
Score = 44.1 bits (103), Expect = 2e-06
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 24/86 (27%)
Query: 7 FTCK----YEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRK 43
C + + + W DGK D V I V
Sbjct: 246 IPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTS 305
Query: 44 EDKG-MYQCVIRNEQESAQASGELKL 68
ED Y C R+ + + ++K
Sbjct: 306 EDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 26.4 bits (57), Expect = 2.5
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 88 PGPNYYFKCIASGNPTPEISWYLDGKK 114
F + + + WY +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQD 58
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 78.9 bits (194), Expect = 6e-19
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE- 56
F C + P SW KD N+ + +D G+Y C + +
Sbjct: 23 FECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTD 81
Query: 57 ---------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
+E + L +F +K + E L G ++ + +++
Sbjct: 82 GIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141
Query: 108 WYLDGKKLVNAE 119
+ + K++
Sbjct: 142 YIFNEKEIFEGP 153
Score = 71.9 bits (176), Expect = 2e-16
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 29/139 (20%)
Query: 5 KFFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFR--IDSVRKEDKGMYQCVI 53
+F+ + + ++++ + K + D N + ++ ++ ED+G Y +
Sbjct: 126 RFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185
Query: 54 RNEQESAQASGEL----------------KLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
++ + + ++ L + R P E S E N KC
Sbjct: 186 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-TGECNVLLKCK 244
Query: 98 ASGNPTP-EISWYLDGKKL 115
+ I WY D +++
Sbjct: 245 VANIKKETHIVWYKDEREI 263
Score = 57.3 bits (138), Expect = 4e-11
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
CK +T I W KD + + + F I K+D G+Y+ ++++++
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300
Query: 59 SAQASGEL 66
++ +L
Sbjct: 301 KDKSRLKL 308
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 78.0 bits (192), Expect = 7e-19
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C+ P + W +G P +RI S D G Y+C S E
Sbjct: 21 LHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGLSGRSDPIQLE 79
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKL 115
+ + S G +C A + + +Y +GK
Sbjct: 80 IH------RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124
Score = 73.0 bits (179), Expect = 6e-17
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 7 FTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
C + V + + ++GK H I G Y C + A
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 65 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI-----SWYLDGKKL 115
+ + F PV+ S + L G C S+Y+ K L
Sbjct: 162 SVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL 216
Score = 46.8 bits (111), Expect = 2e-07
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 7 FTCKYEGNPVK-----TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ-ES 59
+C+ + + S+ K + + ++I + R+ED G+Y C E
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Query: 60 AQASGELKL 68
+ S EL+L
Sbjct: 250 LKRSPELEL 258
Score = 32.6 bits (74), Expect = 0.016
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 115
VI ++ C P W+L+G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT 43
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 77.7 bits (191), Expect = 1e-18
Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 10/123 (8%)
Query: 7 FTCKYEGNPVK-TISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNE-Q 57
C +K ++S M++G F I + D Y C +
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168
Query: 58 ESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
ES LK+ +PP IK S G C A+ G +
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228
Query: 117 NAE 119
Sbjct: 229 EIP 231
Score = 70.0 bits (171), Expect = 9e-16
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV----PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C G ++ W P P+ + ++ G Y+C + +
Sbjct: 24 LRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST 79
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLV 116
+ L + + T+ G C+ + +S +G + V
Sbjct: 80 TIHLYVKDP--AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132
Score = 55.0 bits (132), Expect = 3e-10
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
C V +K G + +++V +D G+Y CV
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265
Query: 55 NEQESAQASGELKLGGRFDPPVI 77
N+ + A+ ++ +
Sbjct: 266 NDVGTRTATMNFQV---VESHHH 285
Score = 40.7 bits (95), Expect = 3e-05
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PVI+ S + + PG +C+++G + W +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD 45
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 76.2 bits (187), Expect = 5e-18
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 10/120 (8%)
Query: 7 FTCKYEGNPVK-TISWMK-DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNE-Q 57
C ++ +S ++ G+P+ H F I + YQC +
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR 168
Query: 58 ESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+ S LK PP + ++ G C AS + +
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL 228
Score = 66.9 bits (163), Expect = 1e-14
Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 11/116 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKP----VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
C G ++ W P D + + ++ ++ G Y+C + A
Sbjct: 24 LRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSA 79
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVN 117
+ L + + + + C+ + +S + +
Sbjct: 80 AIHLYVKDP--ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM 133
Score = 48.8 bits (116), Expect = 4e-08
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 12/73 (16%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIR 54
C V + + + + F +D V + G Y CV
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265
Query: 55 NEQESAQASGELK 67
N Q S +
Sbjct: 266 NVQGKHSTSMFFR 278
Score = 38.0 bits (88), Expect = 2e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASG------NPTPEISWYLDGK 113
PVI+ S + + PG +C+ +G P+P + Y DG
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGS 49
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 74.4 bits (182), Expect = 5e-18
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 12/122 (9%)
Query: 7 FTCKYEGNPVKTISWMKD------GKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
TC G SW GK + ++ V ++ Y C E
Sbjct: 21 LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL 80
Query: 61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEISWYLDGKKLVN 117
+ ++++ P I S L G KC + EI + +
Sbjct: 81 EKGIQVEIYSFPKDPEIHLS---GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKS 137
Query: 118 AE 119
E
Sbjct: 138 QE 139
Score = 37.1 bits (85), Expect = 5e-04
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
S G + C +G +P SW +N
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN 44
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 73.3 bits (180), Expect = 9e-18
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
TC+ +P +I W +G +P H +P D G Y C S
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSGEYTCQTGQTSLSDPVH-- 80
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
L F+ V+ G +C + + +++++ +GK
Sbjct: 81 --LTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ 127
Score = 49.0 bits (117), Expect = 1e-08
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 7 FTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C + P+ +++ ++GK H +P F I G Y C
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGY 157
Score = 32.5 bits (74), Expect = 0.014
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 115
V+K + + C + +P + I W+ +G +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 46
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 73.9 bits (181), Expect = 1e-17
Identities = 11/109 (10%), Positives = 24/109 (22%), Gaps = 8/109 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+ P + + N + + G Y C ++ + L
Sbjct: 45 HDVIFIEWPFRGFFDIHR-----SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
Query: 67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ P + C + P P + W +
Sbjct: 100 SVVK---PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
Score = 56.6 bits (136), Expect = 3e-11
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 13/69 (18%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
TC P + W+ P + S+ K CV
Sbjct: 124 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183
Query: 54 RNEQESAQA 62
+N++E A
Sbjct: 184 KNDKEEAHG 192
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 75.5 bits (185), Expect = 1e-17
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVI 53
C G P I+W D +P+ ++ ++ + + D C +
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV 196
Query: 54 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDG 112
+E + L + P V + + C A NP P +W
Sbjct: 197 EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTM 256
Query: 113 KKLVN 117
L
Sbjct: 257 GPLPP 261
Score = 68.6 bits (167), Expect = 3e-15
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 37/146 (25%)
Query: 7 FTCKYEGNP-----VKTISWMKDGKPVP---------------------------DHNEP 34
C + V ++W + G+ +
Sbjct: 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79
Query: 35 VFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 93
R+ +R ED+G Y C + Q S L++ P L P
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV---LAKPQNTAEVQKVQLTGEPVPM 136
Query: 94 FKCIA-SGNPTPEISWYLDGKKLVNA 118
+C++ G P +I+W+ D + N
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGMPNT 162
Score = 54.3 bits (130), Expect = 4e-10
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
TC NP +W P+P I V K C + N + QA
Sbjct: 237 LTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA 296
Query: 63 SGEL 66
+
Sbjct: 297 ELTV 300
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 73.5 bits (180), Expect = 1e-17
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 22/127 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------RIDSVRKEDKGM 48
C ++ + ++ +++ + I SV+ D G
Sbjct: 22 LECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ 81
Query: 49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
Y+C++ +K+ + + C A G P E+SW
Sbjct: 82 YRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG----TGEVQLTCQARGYPLAEVSW 137
Query: 109 YLDGKKL 115
Sbjct: 138 QNVSVPA 144
Score = 51.2 bits (122), Expect = 3e-09
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----EPVFRIDS---VRKEDKGMYQCVIRNEQES 59
TC+ G P+ +SW P + E ++++ S ++ + + C+ N
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMK 182
Query: 60 AQASGELKLGGRFDPPV 76
S + R +P V
Sbjct: 183 ELTSAIIDPLSRMEPKV 199
Score = 29.6 bits (66), Expect = 0.15
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 94 FKCIASGNPTPEISWYLDGKKLVN 117
+C E+ + V
Sbjct: 22 LECDFDRRECTELEGIRASLQKVE 45
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 74.1 bits (181), Expect = 7e-17
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE--QESAQASG 64
C+ T++ + P + + +++ + C E + +
Sbjct: 303 VKCEAHPRAKVTLNGVPAQPLGP---RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 359
Query: 65 ELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+L + P + + + T C A GNP PE+ DG +
Sbjct: 360 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412
Score = 56.0 bits (134), Expect = 1e-10
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 7 FTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
TC + + K +P +N V+ + +V+++ C + A
Sbjct: 19 VTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA 76
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTP--EISWYLDGKKLVN 117
L + + P ++ + G N +C + G P + K+L
Sbjct: 77 KTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR 132
Score = 54.5 bits (130), Expect = 5e-10
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 18/127 (14%)
Query: 7 FTCKYEGN---PVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
C+ EG T+ ++ K + E + R + C +
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165
Query: 58 ESA------QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEISW 108
S +L P + S L C G ++
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Query: 109 YLDGKKL 115
L ++L
Sbjct: 226 ALGDQRL 232
Score = 51.8 bits (123), Expect = 5e-09
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
C+ GNP+ + +KDG P+ +V ++ +G Y C R+ Q +
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 445
Query: 67 K 67
Sbjct: 446 N 446
Score = 48.3 bits (114), Expect = 7e-08
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 7 FTCKYEGN---PVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQ--CVIRN 55
C +G + + + + + SV ED+G + C +
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL 267
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+S + + + P VI + ++ G KC A ++
Sbjct: 268 GNQSQETLQTVTIYSFPAPNVIL---TKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322
Score = 27.1 bits (59), Expect = 1.6
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 82 SDETLNPGPNYYFKCIASGNPTPEISWY 109
S L G + C S + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIE 34
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 73.7 bits (180), Expect = 7e-17
Identities = 12/122 (9%), Positives = 36/122 (29%), Gaps = 14/122 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
T + ++ + + +D G + C + Q+ + ++
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 67 KLGGRFDPPVIKE-------------SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ I +F+ E L +++ + + I++ L K
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234
Query: 114 KL 115
++
Sbjct: 235 EV 236
Score = 68.7 bits (167), Expect = 5e-15
Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 37/137 (27%)
Query: 7 FTCKYEGNPVKTISWMKDGKP--------------------------VPDHNEPVFRIDS 40
TC W + + D I +
Sbjct: 14 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 73
Query: 41 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
++ ED Y C + +++E Q F SD L G + +
Sbjct: 74 LKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLTLESPP 122
Query: 101 NPTPEISWYLDGKKLVN 117
+P + K +
Sbjct: 123 GSSPSVQCRSPRGKNIQ 139
Score = 39.4 bits (91), Expect = 8e-05
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 8 TCKYEG--NPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
TC+ G +P +S + K + V + GM+QC++ + +
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKR--EKAVWVLNPEAGMWQCLLSDSGQ 352
Score = 38.6 bits (89), Expect = 1e-04
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 35/128 (27%)
Query: 7 FTCKYEGNP----VKTISWMKDGKPVP-DHNEPVFRID------------SVRKEDKGMY 49
+ E T V +P ++ + G
Sbjct: 213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272
Query: 50 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI--S 107
+ + L V++ + + L C G +P++ S
Sbjct: 273 TLALEAKTGKLHQEVNLV--------VMRATQLQKNLT--------CEVWGPTSPKLMLS 316
Query: 108 WYLDGKKL 115
L+ K+
Sbjct: 317 LKLENKEA 324
Score = 30.5 bits (68), Expect = 0.10
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 94 FKCIASGNPTPEISWYLDGKKLVNA 118
C AS + + W + +
Sbjct: 14 LTCTASQKKSIQFHWKNSNQIKILG 38
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 73.6 bits (180), Expect = 7e-17
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIR 54
TC G P +SW K ++ E +R+ R+ + C++
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214
Query: 55 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
+ + S L + +++P V E F + C A NP E W
Sbjct: 215 YHMDRFKESLTLNV--QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG 272
Query: 114 KLVN 117
L
Sbjct: 273 SLPK 276
Score = 57.8 bits (139), Expect = 3e-11
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
TCK + NP W +P N +F + G Y C N +
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS 311
Query: 62 ASGELKLGGRFDPPVIKESFSD 83
E+ + + ++
Sbjct: 312 GQVEVNI---TEAAALEHHHHH 330
Score = 53.2 bits (127), Expect = 1e-09
Identities = 19/149 (12%), Positives = 35/149 (23%), Gaps = 37/149 (24%)
Query: 7 FTCKYEGNP----VKTISWMKDGKPVPD---------------------------HNEPV 35
C + + ++W K +
Sbjct: 34 LHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93
Query: 36 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD----ETLNPGPN 91
R+ + ED+G+Y C + +L L P E +
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 92 YYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
C ++ G P +SW K +
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQ 181
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 71.2 bits (174), Expect = 7e-17
Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 37/137 (27%)
Query: 7 FTCKYEGNPVKTISWMKDG--------------------------KPVPDHNEPVFRIDS 40
TC W + + D I +
Sbjct: 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 41 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
++ ED Y C + +++E Q F SD L G + +
Sbjct: 75 LKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLTLESPP 123
Query: 101 NPTPEISWYLDGKKLVN 117
+P + K +
Sbjct: 124 GSSPSVQCRSPRGKNIQ 140
Score = 58.5 bits (141), Expect = 6e-12
Identities = 5/61 (8%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
T + ++ + + +D G + C + Q+ + ++
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Query: 67 K 67
Sbjct: 176 V 176
Score = 32.3 bits (73), Expect = 0.021
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 93 YFKCIASGNPTPEISWYLDGKKLV 116
C AS + + W + +
Sbjct: 14 ELTCTASQKKSIQFHWKNSNQIKI 37
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 69.5 bits (170), Expect = 3e-16
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
TC V + W +G + N I + + ED G Y+C + ES
Sbjct: 24 LTCNGNNFFEVSSTKWFHNGSLSEETNS-SLNIVNAKFEDSGEYKCQHQQVNESE----P 78
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKL 115
+ L D ++ S E + G + +C N ++ +Y DG+ L
Sbjct: 79 VYLEVFSDWLLL--QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL 127
Score = 49.5 bits (118), Expect = 1e-08
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 7 FTCKYEGN-PVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
C N V + + KDG+ + E I + ED G Y C + Q S
Sbjct: 105 LRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQ-LDYESE 163
Query: 65 ELKL 68
L +
Sbjct: 164 PLNI 167
Score = 33.7 bits (77), Expect = 0.006
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 115
P + + + G N C + W+ +G
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS 46
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 72.1 bits (176), Expect = 3e-16
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPV--------FRIDSVRKEDKGMYQCVIRNEQE 58
C+ EG ++ W+ + ++ C N+
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
A+ S ++ S T ++ G P P + W +G L
Sbjct: 238 RAEVSVQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE 289
Score = 45.9 bits (108), Expect = 4e-07
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP----------------VFRIDSVRKEDKGMYQ 50
+G P ++ W+ +G + + + R++ + G Y
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 51 CVIRNEQESAQASGELKLGGRFDPP 75
+ N A AS D P
Sbjct: 326 LLAANPFGQASASIMAAF---MDNP 347
Score = 44.0 bits (103), Expect = 2e-06
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
P +K + +++ G + +C G + W L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA 201
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.9 bits (166), Expect = 3e-16
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
+C G+PV TI W KDG V + + +I + D G Y C+
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE 87
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGP 90
A S +++ PV +D L P
Sbjct: 88 ATWSAYIEVQEF-GVPVQPPRPTDPNLIPSA 117
Score = 50.5 bits (121), Expect = 2e-09
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PPVI++ ++T+ + C+A+G+P P I W DG + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD 53
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.5 bits (165), Expect = 4e-16
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C GNP+ T+ W+K+GK + ++SV DKG Y CV+ NE
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87
Query: 57 QESAQASGELK 67
S + L
Sbjct: 88 YGSINHTYHLD 98
Score = 44.4 bits (105), Expect = 2e-07
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 74 PPVIKESFSDE----TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P + E + F+C A GNP P + W +GK+
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 69.6 bits (170), Expect = 4e-16
Identities = 16/140 (11%), Positives = 49/140 (35%), Gaps = 29/140 (20%)
Query: 4 LKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCV 52
++F+ + + ++++ + K + + + ++ ++ ED+G Y
Sbjct: 20 VRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79
Query: 53 IRNEQESAQAS----------------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
+++ + + ++ + + R P E + + N KC
Sbjct: 80 LQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKC 138
Query: 97 IASGNPTP-EISWYLDGKKL 115
+ I WY D +++
Sbjct: 139 KVANIKKETHIVWYKDEREI 158
Score = 55.3 bits (133), Expect = 1e-10
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
CK +T I W KD + + + F I K+D G+Y+ ++++++
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195
Query: 59 SAQASGEL 66
++ +L
Sbjct: 196 KDKSRLKL 203
Score = 35.7 bits (82), Expect = 0.001
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P K + E L G ++ + ++++ + K++
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 48
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 67.0 bits (164), Expect = 4e-16
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNEQES 59
CK G+P+ ISW+K+G P + +I ++R D G Y CV +
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 87
Query: 60 AQASGEL 66
S L
Sbjct: 88 TSWSAVL 94
Score = 55.1 bits (133), Expect = 2e-11
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
PP+I + +++TL KC A+G+P P ISW +G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP 50
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 66.2 bits (162), Expect = 1e-15
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F+C +G PV T++W++ G+ + + F I SV+ D+G Y V+ N +
Sbjct: 34 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Query: 58 ESAQASGELK 67
+A L
Sbjct: 94 GKQEAEFTLT 103
Score = 48.1 bits (115), Expect = 1e-08
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
I T+ G + F C G P P ++W G+ L +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 68.0 bits (166), Expect = 1e-15
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 9/112 (8%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C+ +P + W + + + ID+ D G Y+C S
Sbjct: 27 LKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYRCQTNLSTLSDPVQ-- 83
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV 116
L ++ + +C + ++++ +GK
Sbjct: 84 --LEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131
Score = 48.7 bits (116), Expect = 2e-08
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
C ++ + ++++++GK H+ F I +D G Y C ++ +S
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN-VSSE 166
Query: 65 ELKL 68
+ +
Sbjct: 167 TVNI 170
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 1e-15
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-------HNEP---VFRIDSVRKEDKGMYQCVIRNE 56
CK G P +SW DGKPV E I+ V D G+Y C+ N
Sbjct: 29 MDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88
Query: 57 QESAQASGELKLGGRFDPP 75
S EL + + P
Sbjct: 89 AGQNSFSLELVVAAKESGP 107
Score = 52.0 bits (125), Expect = 4e-10
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P ++ D T+ G C SG PTP++SW LDGK +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 68.2 bits (166), Expect = 5e-15
Identities = 12/101 (11%), Positives = 24/101 (23%)
Query: 14 NPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 73
+P ++ + V + + Y C + +
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
+ + + G N CI GN W K+
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221
Score = 57.8 bits (139), Expect = 2e-11
Identities = 12/118 (10%), Positives = 30/118 (25%), Gaps = 17/118 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRKEDKGMYQCVIRN--- 55
TC + W + + P V + ++ D G Y C +
Sbjct: 20 LTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75
Query: 56 EQESAQASGELKLGGRFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
+ + + + + ++ L C + P ++ +
Sbjct: 76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132
Score = 50.5 bits (120), Expect = 9e-09
Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 14/76 (18%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
C GN V W K EPV I S ED G Y C
Sbjct: 201 LMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN 260
Query: 53 IRNEQESAQASGELKL 68
+ Q + +
Sbjct: 261 VTESVNDHQDEKAINI 276
Score = 29.3 bits (65), Expect = 0.26
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
V+ + LN + C S + W ++
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEP 37
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 64.3 bits (157), Expect = 5e-15
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
K G P +SW +G+ V + + VR D G Y CV +N
Sbjct: 25 MDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNR 84
Query: 57 QESAQASGELK 67
A + +L
Sbjct: 85 AGEATFTVQLD 95
Score = 49.2 bits (118), Expect = 4e-09
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP + + +++ G SG P P++SWYL+G+ + + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD 50
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 63.9 bits (156), Expect = 6e-15
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
C G PV I+W+ +G+P+ + I ED G Y C+ N
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90
Query: 61 QASGELK 67
S +
Sbjct: 91 SCSAWVT 97
Score = 46.5 bits (111), Expect = 4e-08
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P D + G ++ +C G P P I+W L+G+ +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 64.3 bits (157), Expect = 7e-15
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
K G T +WMK K + N I + R+E G Y ++ N+
Sbjct: 27 LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL 86
Query: 58 ESAQASGELKLGGRFDPP 75
S QA L + + DPP
Sbjct: 87 GSRQAQVNLTVVDKPDPP 104
Score = 42.7 bits (101), Expect = 1e-06
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + D+ + G + +G +W K++ +E
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE 52
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 66.8 bits (163), Expect = 7e-15
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
TC+ P TISW +DG+ +P N + + D G Y C N
Sbjct: 38 ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97
Query: 56 EQESAQASGELKLGGRFDPPVIKES 80
L P I +
Sbjct: 98 RIGQESLEFILVQADTPSSPSIDQV 122
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 10/69 (14%)
Query: 47 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 106
Y P ++ G C P+ I
Sbjct: 1 ATYAAASSALVPRGSHM---------YAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATI 50
Query: 107 SWYLDGKKL 115
SW+ DG+ L
Sbjct: 51 SWFRDGQLL 59
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 66.1 bits (161), Expect = 1e-14
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 7 FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
C+ +P ++ W + + + ID+ +D G Y+C + S
Sbjct: 27 LKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEYRCQTQLSTLSD----P 81
Query: 66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
++L ++ + +C + N ++++ +GK
Sbjct: 82 VQLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR 130
Score = 50.3 bits (120), Expect = 7e-09
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 7 FTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
C N + ++++++GK H+ F I +D G Y C ++ +S
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKN-VSSE 166
Query: 65 ELKL--GGRFDPPVIKESFS 82
+++ I F
Sbjct: 167 TVQITITQGLAVSTISSFFP 186
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 67.0 bits (163), Expect = 1e-14
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 8/114 (7%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGM-YQCVIRNE--QESAQAS 63
C E +P +G P + ED G + C E + +
Sbjct: 118 VKC--EAHP--RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 173
Query: 64 GELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+L + P + + + T C A GNP PE+ DG +
Sbjct: 174 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
Score = 56.6 bits (136), Expect = 5e-11
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
C+ GNP+ + +KDG P+ +V ++ +G Y C R+ Q +
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFP----LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 260
Score = 37.7 bits (87), Expect = 3e-04
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 14/117 (11%)
Query: 7 FTCKYEGN---PVKTISWMKDGKPVP-------DHNEPVFRID-SVRKEDKGMYQCVIRN 55
C +G + + + D + + E C +
Sbjct: 23 VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL 82
Query: 56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
+S + + + + P + ++ G KC A ++
Sbjct: 83 GNQSQETLQTVTI---YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ 136
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 63.1 bits (154), Expect = 2e-14
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
C + G P ++W G+ + + F I V+K+D G+Y + N
Sbjct: 25 VACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 84
Query: 56 EQESAQASGELK 67
E S A+ +
Sbjct: 85 EFGSDSATVNIH 96
Score = 53.5 bits (129), Expect = 1e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP I+ SD +++ G C +G PTPE++W G+K+ + E
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE 50
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 63.1 bits (154), Expect = 2e-14
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
+C GNP I W KD + + + I VRKED+G+Y C +
Sbjct: 30 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC 89
Query: 60 AQASGELK 67
A+
Sbjct: 90 AKVEAFFI 97
Score = 50.8 bits (122), Expect = 1e-09
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE 53
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 66.8 bits (162), Expect = 2e-14
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 17/130 (13%)
Query: 7 FTCKY-EGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQES 59
C I+W K+ + + I + ED G Y C + +
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207
Query: 60 AQASG------ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE----ISWY 109
+ L + D + G C A I W
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 110 LDGKKLVNAE 119
++ +
Sbjct: 268 NPSGWIIGLD 277
Score = 65.2 bits (158), Expect = 7e-14
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 10/114 (8%)
Query: 11 YEGNPVKTISWMKDGKPVPDHNEPVF----RIDSVRKEDKG-MYQCVIRNEQ-ESAQASG 64
+ ++W K GK N V I + D Y C + + + Q
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIV 121
Query: 65 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVN 117
+ PP + + C I I+WY + ++L+
Sbjct: 122 RSHI---RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172
Score = 44.4 bits (104), Expect = 2e-06
Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 19/81 (23%)
Query: 7 FTCKYEGNPVK----TISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGM 48
TC + I W + + V+ ++V +E G
Sbjct: 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGN 307
Query: 49 -YQCVIRNEQESAQASGELKL 68
Y C N + + L
Sbjct: 308 TYTCRGHNYYFDKTLTTTVVL 328
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 65.5 bits (159), Expect = 3e-14
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 13/121 (10%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSV-RKEDKGMYQCVIRNEQE 58
C V S ++ DGK +P + I +V R + +C + +
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGT 170
Query: 59 SAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKK 114
S + L PV+ + L G + C T W +
Sbjct: 171 W-LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229
Query: 115 L 115
Sbjct: 230 P 230
Score = 63.2 bits (153), Expect = 3e-13
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKP--VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
TC + W + ++ + + + G Y C N S S
Sbjct: 32 LTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTS---SI 84
Query: 65 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY-LDGKKL 115
+ + DP + + +C + + S DGK L
Sbjct: 85 YVFV---RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133
Score = 44.3 bits (104), Expect = 1e-06
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR----------------IDSVRKEDKGMY 49
C + + W+K + I S R +D G++
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267
Query: 50 QCVIRNEQESAQASGELK 67
C N SA + LK
Sbjct: 268 MCYANNTFGSANVTTTLK 285
Score = 40.9 bits (95), Expect = 2e-05
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G PP I + S+ + G CI + W E
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVE 53
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 64.1 bits (156), Expect = 4e-14
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 24/126 (19%)
Query: 8 TCKYEGNPVKTISWMKDGKP-----VPDHNEPVF-------------RIDSVRKEDKGMY 49
+ + I W K E +I ++ +D+ +Y
Sbjct: 22 PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81
Query: 50 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
+ I + + L + V K S N C PE++ Y
Sbjct: 82 KVSIYDTKGKNVLEKIFDL--KIQERVSKPKISWT----CINTTLTCEVMNGTDPELNLY 135
Query: 110 LDGKKL 115
DGK L
Sbjct: 136 QDGKHL 141
Score = 50.7 bits (121), Expect = 5e-09
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
TC+ ++ +DGK + ++C N+ + +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLK--LSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Query: 67 K 67
Sbjct: 178 S 178
Score = 26.8 bits (59), Expect = 1.7
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 96 CIASGNPTPEISWYLDGKKLVNAE 119
+ +I W K A+
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQ 46
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 63.8 bits (155), Expect = 4e-14
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 26/126 (20%)
Query: 12 EGNPVKTISWMKDGKPV-----------PDHNEPVF-----RIDSVRKEDKGMYQCVIRN 55
+ + + W + V + +I ++ ++D G Y + +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 56 E--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ +L++ P+I S+ TL C E+ Y +
Sbjct: 83 TNGTRILNKALDLRILEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKE 134
Query: 114 KLVNAE 119
L +
Sbjct: 135 HLRSLR 140
Score = 44.6 bits (105), Expect = 7e-07
Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
TC+ + + + + + + ++C N
Sbjct: 115 LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNR 162
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 62.0 bits (151), Expect = 4e-14
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C G P + W K G+ + D E + + D G+Y C RN
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAA 92
Query: 58 ESAQASGELKLGGRFDPP 75
A A+ + + +PP
Sbjct: 93 GEAYAAAAVTV---LEPP 107
Score = 46.6 bits (111), Expect = 4e-08
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP + G KC+ G P P + W G++L +E
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE 58
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 61.5 bits (150), Expect = 7e-14
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F K G P T W KDGK + D I D G+Y C ++N
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSA 85
Query: 58 ESAQASGEL 66
S +S +L
Sbjct: 86 GSVSSSCKL 94
Score = 48.1 bits (115), Expect = 1e-08
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
PVI D T++ F A+G P P W DGK +
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ 49
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 63.8 bits (154), Expect = 8e-14
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNE------- 56
TC K I+W KDGK + ++ + + S K+ +GMYQC
Sbjct: 22 LLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 57 -------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA--------SGN 101
++ + + + + D ++E Y I+
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138
Query: 102 PTPEISWYLDGKKL 115
P EI W + K +
Sbjct: 139 PGSEILWQHNDKNI 152
Score = 43.7 bits (102), Expect = 2e-06
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 11/64 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
TC P I W + K + + + E G Y C R +
Sbjct: 133 LTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 58 ESAQ 61
Sbjct: 191 PEDA 194
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 63.6 bits (154), Expect = 9e-14
Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 41/148 (27%)
Query: 7 FTCKYEGNPVKT----ISWMKDGKPVPDHNEPVF-------------------------- 36
CK+ +P I W+ ++ +
Sbjct: 20 LPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDV 79
Query: 37 -------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 89
+ +++ D G YQC ++ A L + P F D + G
Sbjct: 80 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---KPSGTRCFVDGSEEIG 136
Query: 90 PNYYFKCIAS-GNPTPEISWYLDGKKLV 116
++ KC G+ + W
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQT 164
Score = 55.5 bits (133), Expect = 1e-10
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVP-------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
C+ EG+ W K + PV + + E G Y C ++N
Sbjct: 141 LKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG 200
Query: 59 SAQASGELK 67
S Q L
Sbjct: 201 SDQCMLRLD 209
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 60.4 bits (147), Expect = 2e-13
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---PDHNEPVF--------RIDSVRKEDKGMYQCVIRN 55
FTC+ GNP I W KDGK + DH + +D G Y + N
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87
Query: 56 EQESAQASGELKLGGRFDPP 75
Q +G L + P
Sbjct: 88 PQGRISCTGRLMVQAVNSGP 107
Score = 45.0 bits (107), Expect = 2e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P + + G F C +GNP P+I W+ DGK++
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 63.3 bits (153), Expect = 3e-13
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 13/118 (11%)
Query: 7 FTCKYEGNPVK----TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
T G+ T +W KD +P ++ + E+ G Y+ +++
Sbjct: 22 LTATVAGDEPLPSNLTYTWTKDDQPHENNTA-TLTVADATSENAGSYKVTVQDTDTMTSV 80
Query: 63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC---IASGNPTPEI-----SWYLDG 112
E+ L + V ++ + + G + SW
Sbjct: 81 ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGE 138
Score = 51.0 bits (121), Expect = 6e-09
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 13 GNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF 72
N SW K + I + G+Y + E E + AS K+
Sbjct: 126 DNYELHYSWSKGEDVIDTT--QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML-- 181
Query: 73 DPPVI--KESFSDETLNPGPNYYFKCI--------ASGNPTPEI--SWYLDGK 113
+ ++ +T+ G + +SG P I +WYL +
Sbjct: 182 -ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Score = 33.6 bits (76), Expect = 0.009
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGN-PTPE---ISWYLDGKKLVNA 118
+ + G + +G+ P P +W D + N
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN 50
Score = 31.0 bits (69), Expect = 0.080
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 12 EGNPVKTISWMKDGKPVPDHN---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
EG T+ + G+ + + + +S +D + CV + Q+ + E+
Sbjct: 233 EGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 59.6 bits (145), Expect = 3e-13
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV----------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
+ + +G P +SW+++ +PV + RI + + D G Y C NE
Sbjct: 25 MSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNE 84
Query: 57 QESAQASGELK 67
+ Q L+
Sbjct: 85 YGARQCEARLE 95
Score = 45.7 bits (109), Expect = 7e-08
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP K S D+++ G + G P P +SW + + +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV 46
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 59.7 bits (145), Expect = 4e-13
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
C+ + +I+W++DG + + N + D G+Y CV + S
Sbjct: 23 LRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDT 81
Query: 62 ASGEL 66
+
Sbjct: 82 TYFSV 86
Score = 39.3 bits (92), Expect = 3e-05
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
++PG +C + I+W DG +L +
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN 47
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 59.3 bits (144), Expect = 5e-13
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD------HNEP---VFRIDSVRKEDKGMYQCVIRNEQ 57
+ G P T +W + S ++ D G Y+ ++NE
Sbjct: 22 LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81
Query: 58 ESAQASGELK 67
+A E+
Sbjct: 82 GEDEAIFEVI 91
Score = 43.5 bits (103), Expect = 6e-07
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + + G + + G P P +W + A
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP 47
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 62.2 bits (150), Expect = 5e-13
Identities = 24/156 (15%), Positives = 37/156 (23%), Gaps = 47/156 (30%)
Query: 7 FTCKY---EGNPVKTISWMKDGKP------------------------------------ 27
C Y ISW+K P
Sbjct: 22 LPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGR 81
Query: 28 --VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES-----AQASGELKLGGRFDP-PVIKE 79
V + P R+ V +D G Y C + S LK+ G V
Sbjct: 82 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVS 141
Query: 80 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ ++ G + C + ++WY
Sbjct: 142 TAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177
Score = 52.2 bits (124), Expect = 2e-09
Identities = 9/90 (10%), Positives = 17/90 (18%), Gaps = 30/90 (33%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------------------ 36
TC ++W ++ +
Sbjct: 156 MTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
I + + D G C + Q A
Sbjct: 216 VIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 28.0 bits (61), Expect = 0.63
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 77 IKESFSDETLNPGPNYYFKC---IASGNPTPEISWYLDGK 113
++ + ++ ++ G C +A+ P ISW
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGAS 44
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 59.8 bits (145), Expect = 5e-13
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-------------DHNEPVFRIDSVRKEDKGMYQCVI 53
GNP T+ W+ +G+P+ + +E + + G Y +
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84
Query: 54 RNEQESAQASGELKLGGRFDPPVIKESFS 82
+N +A + P + S
Sbjct: 85 KNPLGTANQTINGHF---LKEPFPVDEVS 110
Score = 43.7 bits (103), Expect = 8e-07
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PP + E + + + GNP P + W +G+ L ++
Sbjct: 8 PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK 50
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.3 bits (144), Expect = 6e-13
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58
++G P + W K G P+ + VF + + D G Y+ ++ E
Sbjct: 44 LVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM 103
Query: 59 SAQASGELK 67
A+ ++
Sbjct: 104 KDTATIRIR 112
Score = 38.5 bits (90), Expect = 7e-05
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 58 ESAQASGELKLGGRFDPPVI---KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
S + + + +PP I + G G P P++ W G
Sbjct: 5 SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64
Query: 115 L 115
L
Sbjct: 65 L 65
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 59.9 bits (145), Expect = 9e-13
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
F CK EG P + W KD PV + I V +D Y C N
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 57 QESAQASGELK 67
A + EL
Sbjct: 121 LGEATCTAELL 131
Score = 50.6 bits (121), Expect = 3e-09
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIA 98
+ + N+ E+ A E + P ++ D + G F C
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 99 SGNPTPEISWYLDGKKLVN 117
G P PE+ W+ D +
Sbjct: 66 EGYPDPEVMWFKDDNPVKE 84
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 61.2 bits (147), Expect = 2e-12
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
F C+ + GK P + I +RKED G Y C
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310
Query: 55 NEQESAQASGELKLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
++ + + S + S + G + C + + I ++
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Score = 56.5 bits (135), Expect = 1e-10
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN- 87
I+ +R D G Y C ++ S + + +L++ V ++ T +
Sbjct: 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC 239
Query: 88 -----PGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
F C S ++ GK+ E
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Score = 45.8 bits (107), Expect = 5e-07
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 31/131 (23%)
Query: 7 FTCKYE---GNPVKTISWMKDGKPV-------------------------PDHNEPVFRI 38
TC Y N W + G P++ V I
Sbjct: 20 ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNI 79
Query: 39 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
+ ++D G Y+C + L+ P + T++ G C
Sbjct: 80 AQLSQDDSGRYKCGLGINSRGLSFDVSLE---VSQGPGLLNDTKVYTVDLGRTVTINCPF 136
Query: 99 SGNPTPEISWY 109
+
Sbjct: 137 KTENAQKRKSL 147
Score = 44.6 bits (104), Expect = 1e-06
Identities = 16/138 (11%), Positives = 29/138 (21%), Gaps = 28/138 (20%)
Query: 7 FTCKYEGNPVKTIS-WMKDGKPVPDHNEPVFR---------------------------I 38
C Y K+I W + +
Sbjct: 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVIL 410
Query: 39 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
+ + D G Y C+ + + G + V + +F C
Sbjct: 411 NQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470
Query: 99 SGNPTPEISWYLDGKKLV 116
S W G + +
Sbjct: 471 SSYEKYWCKWNNTGCQAL 488
Score = 39.6 bits (91), Expect = 7e-05
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 16/71 (22%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV--------------PDHNEPVF--RIDSVRKEDKGMYQ 50
F CK+ W G D N + ++ V + D+G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 51 CVIRNEQESAQ 61
C ++ +
Sbjct: 526 CGVKQGHFYGE 536
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 59.9 bits (144), Expect = 4e-12
Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 41/148 (27%)
Query: 7 FTCKY---EGNPVKTISWMK---------------DGKPVPD--------------HNEP 34
C E V + W+ VP HN+
Sbjct: 25 MGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG 84
Query: 35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
+ V+K D+G+Y C IR + ES ++L V+ E D + G
Sbjct: 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------WVLPEEPRDLRVRVGDTTQM 138
Query: 95 KCIASGNPTPE---ISWYLDGKKLVNAE 119
+C ++W E
Sbjct: 139 RCSIQSTEEKRVTKVNWMFSSGSHTEEE 166
Score = 40.2 bits (93), Expect = 4e-05
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 36/97 (37%)
Query: 7 FTCKYEGNP---VKTISWMKD----------------GKPVPDHNEPVFR---------- 37
C + V ++WM + + FR
Sbjct: 138 MRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDIS 197
Query: 38 -------IDSVRKEDKGMYQCVIRNEQESAQASGELK 67
+ +V++ D+G+Y C I + ++ + L
Sbjct: 198 RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 57.4 bits (139), Expect = 4e-12
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
C+ P + W ++ + V + + + I V K+D G Y N
Sbjct: 35 LECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN 94
Query: 56 EQESAQASGEL 66
E + L
Sbjct: 95 EAGVTTCNTRL 105
Score = 43.9 bits (104), Expect = 5e-07
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P+ + + G + +C S P P++ W + + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMV 56
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 56.7 bits (137), Expect = 5e-12
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 7 FTCK-YEGNPVKTISWMK-DGKPVPDHNEP---VFRIDSVRKEDKGMYQCVIRNEQESAQ 61
F C +P T+ W + +P + I +V+ D G Y C N Q
Sbjct: 30 FICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ 89
Query: 62 ASGEL 66
+ L
Sbjct: 90 GTATL 94
Score = 36.3 bits (84), Expect = 3e-04
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDG 112
V E +++ PG + F C A S +P + W
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH 49
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 56.3 bits (136), Expect = 5e-12
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
C+ + +I+W++DG + + N + D G+Y CV + S
Sbjct: 29 LRCRLRDDVQ-SINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDT 87
Query: 62 ASGEL 66
+
Sbjct: 88 TYFSV 92
Score = 42.9 bits (101), Expect = 9e-07
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P + ++PG +C I+W DG +LV +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN 53
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 59.4 bits (143), Expect = 9e-12
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
K P+ W G P N I + + VI + + A E+K
Sbjct: 97 YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156
Query: 68 LGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
+ G + +N G F+C A G +L G +
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205
Score = 34.8 bits (79), Expect = 0.004
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD------------HNEPVFRIDSVRKEDKGMYQCVIR 54
F C G V G V D F + + K D G Y+C+IR
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 55 NEQESAQAS 63
E ++
Sbjct: 244 TEGGVGISN 252
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 58.1 bits (140), Expect = 1e-11
Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 27/134 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD--------------------HNEPVF-----RIDSV 41
+ +W K D E ++ +
Sbjct: 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78
Query: 42 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 101
+D G+Y + +E ++ ++ T+ + C++ +
Sbjct: 79 TMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-ND 136
Query: 102 PTPEISWYLDGKKL 115
I W + + L
Sbjct: 137 IGANIQWLFNSQSL 150
Score = 51.6 bits (123), Expect = 3e-09
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
TC I W+ + + + N + RID +++ED G YQC I N S
Sbjct: 130 LTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNP-VS 187
Query: 60 AQASGELKL 68
+ S +KL
Sbjct: 188 VRRSNSIKL 196
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 55.7 bits (135), Expect = 1e-11
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
F + G P W K+G + + N I V ED N
Sbjct: 25 FRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI 84
Query: 57 QESAQASGELKLGGR 71
+ L + +
Sbjct: 85 AGETSSHAFLLVQAK 99
Score = 46.5 bits (111), Expect = 5e-08
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
P I E +T+ G + +F+ G P PE WY +G K+
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER 48
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 55.5 bits (134), Expect = 1e-11
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
+GNP + W +G + + + +D+ + G Y +
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 53 IRNEQESAQASGELKLGGRFDPPVI 77
+NE + P I
Sbjct: 81 AKNEYGKDEKQISAHF---MGWPGI 102
Score = 42.8 bits (101), Expect = 1e-06
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P I E+ ++ GNP P + W+ +G L
Sbjct: 4 APTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAIL 42
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 4e-11
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F + P + W +G + I +D G Y+ V N +
Sbjct: 28 FILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYK 87
Query: 58 ESAQASGELK 67
A L
Sbjct: 88 GEASDYATLD 97
Score = 46.5 bits (111), Expect = 4e-08
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + G N F PT E+ WY +G +L +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS 53
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 55.6 bits (133), Expect = 9e-11
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 17 KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 76
++ DG + ++ F I S GM C + ES Q+ + + +
Sbjct: 47 PEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 106
Query: 77 IKESFSDET-LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA 118
+ S S L+ G C A + +W K +
Sbjct: 107 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151
Score = 39.4 bits (91), Expect = 6e-05
Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 22/90 (24%)
Query: 7 FTCKYEGNPVK--TISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKG 47
C +W ID V + D+G
Sbjct: 125 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184
Query: 48 MYQCVIRNEQESAQASGELKLGGRFDPPVI 77
+Y C + + + S +++ + P+
Sbjct: 185 LYTCAASSGLMTKKNSTFVRV---HEDPIE 211
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 54.3 bits (130), Expect = 1e-10
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKE 44
C+ G+PV I W +G+ D H ID++ +E
Sbjct: 41 LHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 45 DKGMYQCVIRNEQESAQASGELK 67
D G Y+C N+ + + +
Sbjct: 101 DTGTYECRASNDPDRNHLTRAPR 123
Score = 49.6 bits (118), Expect = 6e-09
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
++ + G + C A G+P PEI W+ +G+ +
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIC 66
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 52.7 bits (127), Expect = 2e-10
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 7 FTCKYEGNPVKT-ISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
+ CK E T ++W + + + + + + K D G Y+C + N+
Sbjct: 21 YVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVND 80
Query: 57 QESAQASGELK 67
+ EL
Sbjct: 81 YGEDSSYAELF 91
Score = 36.9 bits (86), Expect = 2e-04
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAE 119
++ G + + C +++WY ++L N+E
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE 47
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 52.1 bits (125), Expect = 5e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
Score = 49.8 bits (119), Expect = 3e-09
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------------DSVRKEDKGMYQ 50
CK EG P TI W K G+ V D ++P + D+G+Y
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 51 CVIRNE 56
CV RN
Sbjct: 89 CVARNY 94
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 51.2 bits (123), Expect = 7e-10
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
C+ N W K+G PV + + I + ED+G Y
Sbjct: 27 LKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYN 84
Query: 58 ESAQAS 63
+ A
Sbjct: 85 VTLPAK 90
Score = 36.9 bits (86), Expect = 2e-04
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
I +D+T+N G KC S N + W +G +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQE 48
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 52.2 bits (125), Expect = 8e-10
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 30/130 (23%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG 47
F P+K + W K V + F I ++ D+
Sbjct: 15 FHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73
Query: 48 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
Y+ N ++ + L + P+I S+ TL C E+
Sbjct: 74 EYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLT--------CEVLEGTDVELK 123
Query: 108 WYLDGKKLVN 117
Y + L +
Sbjct: 124 LYQGKEHLRS 133
Score = 35.3 bits (81), Expect = 0.001
Identities = 4/49 (8%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
TC+ + + + + + + + ++C N
Sbjct: 111 TCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNLRAPFKCKAVNR 157
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 51.2 bits (123), Expect = 9e-10
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C+ + + W D P+ V + + +D G ++
Sbjct: 33 FRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ 92
Query: 57 QESAQ 61
+ SA
Sbjct: 93 RASAA 97
Score = 46.6 bits (111), Expect = 5e-08
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + GR I E D + G + F+C S + W+LD L E
Sbjct: 1 GSSGSSGLVQGR--RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 52.6 bits (126), Expect = 9e-10
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 11 YEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRNEQES 59
K + + +GK + R I +V KED+G Y + +E E
Sbjct: 35 LHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94
Query: 60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
Q +++ P+I S+ TL C E+ Y + L +
Sbjct: 95 -QWKITMEVYEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKEHLRS 143
Score = 41.4 bits (97), Expect = 1e-05
Identities = 4/49 (8%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
TC+ + + + + + + + ++C N
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNLRAPFKCKAVNR 167
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 52.9 bits (126), Expect = 1e-09
Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 3 ALKFFTCKYEGNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQC-VIRNEQES 59
+ + + +G+ ++ G+ P ++ + + D+ Y C V +
Sbjct: 44 RPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103
Query: 60 AQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL 115
A+A+ L + + + + + + C + GNP P+I+WY +G++L
Sbjct: 104 AEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161
Score = 32.5 bits (73), Expect = 0.022
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVP---DHNEPVFRIDSVRKEDKGMYQCV 52
TC GNP I+W ++G+ + + N + +E G+
Sbjct: 139 ATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 52.3 bits (125), Expect = 2e-09
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 37 RIDSVRKEDKGMYQCVIRN-EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
+I V+ +D G+Y+C+I + + + ++ I +
Sbjct: 83 QITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRI-----LVVDPVTSEHELT 137
Query: 96 CIASGNPTPEISWYLDGKKLVNA 118
C A G P E+ W ++++
Sbjct: 138 CQAEGYPKAEVIWTSSDHQVLSG 160
Score = 43.1 bits (101), Expect = 4e-06
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 7 FTCKYEGNPVKTISWMK-DGKPVPDHNEPV--------FRIDS---VRKEDKGMYQCVIR 54
TC+ EG P + W D + + F + S + ++ C R
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR 195
Query: 55 NEQESAQASGELKLGG--RFDPPV 76
+ EL + PP
Sbjct: 196 RLDPEENHTAELVIPELPLAHPPN 219
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 50.1 bits (120), Expect = 2e-09
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C+ V T W K+G V ID VR ED+G Y V
Sbjct: 28 FKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA 86
Query: 58 ESAQA 62
S A
Sbjct: 87 LSLSA 91
Score = 36.6 bits (85), Expect = 2e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + +D T+ FKC S WY +G ++ ++
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK 52
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 50.0 bits (120), Expect = 2e-09
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 14/68 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQCVI 53
+ + WMK+G + + R V +ED+G YQ +
Sbjct: 28 MAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT 86
Query: 54 RNEQESAQ 61
Q A+
Sbjct: 87 NGGQCEAE 94
Score = 36.2 bits (84), Expect = 4e-04
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P +I D+ + G S ++ W +G +L +
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTRED 52
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 50.7 bits (121), Expect = 2e-09
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQ 50
+G P ++ W+ +G + + + R++ + G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 51 CVIRNEQESAQASGELKLGGRFDPPVI 77
+ N A AS D P
Sbjct: 80 LLAANPFGQASASIMAAF---MDNPFE 103
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLDGKKL 115
P + L+ + CI G P P + W +G L
Sbjct: 3 MPASVQ------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL 41
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 51.9 bits (124), Expect = 2e-09
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 34/139 (24%)
Query: 7 FTCKYEGNPVKT----ISWMKDGKPV------PDHNEPVF--------------RIDSVR 42
+C + + + I W K+ K V + P + I ++R
Sbjct: 14 LSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR 73
Query: 43 KEDKGMYQCVIRN-----EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
D+G Y+CV+ + A L + F P I SD + C
Sbjct: 74 PSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIRRIICS 129
Query: 98 ASG-NPTPEISWYLDGKKL 115
SG P P +SW +G++L
Sbjct: 130 TSGGFPEPHLSWLENGEEL 148
Score = 33.4 bits (76), Expect = 0.008
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPV--------FRIDS---VRKEDKGMYQCVIR 54
C G P +SW+++G+ + N V + + S + C+I+
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
Query: 55 NE 56
Sbjct: 186 YG 187
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 51.6 bits (123), Expect = 3e-09
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
RI +V D G Y C ++ +A ELK+ + D + +C
Sbjct: 86 RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV-----DVKGYKDGGIHLEC 140
Query: 97 IASGN-PTPEISWYLDGKKLVNAE 119
++G P P+I W + + +
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTV 164
Score = 35.8 bits (82), Expect = 0.001
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 7 FTCKYEGN-PVKTISWMKD-GKPVPDHNEPV-------FRIDS---VRKEDKGMYQCVIR 54
C+ G P I W + G+ +P PV + + + +R C IR
Sbjct: 138 LECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIR 197
Query: 55 NEQESAQASGELKLGGRFDPPV 76
+ + + + + F
Sbjct: 198 SSLLGLEKTASISIADPFFRSA 219
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 51.2 bits (122), Expect = 4e-09
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 37/146 (25%)
Query: 8 TCKYEGNP-----VKTISWMKDGKPVP---------------------------DHNEPV 35
C + V ++W + G+ + +
Sbjct: 20 PCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDAS 79
Query: 36 FRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
R+ +R ED+G Y C + Q S L++ P L P
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA---KPQNTAEVQKVQLTGEPVPMA 136
Query: 95 KCIASG-NPTPEISWYLDGKKLVNAE 119
+C+++G P +I+W+ D +
Sbjct: 137 RCVSTGGRPPAQITWHSDLGGMPQTS 162
Score = 32.0 bits (72), Expect = 0.032
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 8 TCK-YEGNPVKTISWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVIR 54
C G P I+W D +P ++ ++ + + D C +
Sbjct: 137 RCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 196
Query: 55 NEQESAQASGELKLGGRFDPPVI 77
+E + L + P
Sbjct: 197 HESFEKPQLLTVSLTVYY-PHHH 218
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 49.2 bits (118), Expect = 4e-09
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C+ + W+KD K + + + I +D G Y C + +
Sbjct: 28 LRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASK 86
Query: 58 ESAQ 61
+A
Sbjct: 87 STAS 90
Score = 37.3 bits (87), Expect = 1e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + D+ + PG + +C S TP + W D K + ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ 52
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 49.3 bits (118), Expect = 4e-09
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 10/65 (15%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
F C + W GK V + + + D G +R
Sbjct: 28 FECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL 87
Query: 57 QESAQ 61
A
Sbjct: 88 TSKAS 92
Score = 37.8 bits (88), Expect = 9e-05
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAE 119
I + + G + F+C ++ + + W + GK + ++
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS 54
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 49.9 bits (118), Expect = 8e-09
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 28/132 (21%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQES------ 59
TC + + + W K+G+ +P ++ + ED G Y C ++
Sbjct: 19 LTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76
Query: 60 -------------AQASGELKLGGRFDPPVIKE---SFSDETLNPGPNYYFKCIASGNPT 103
A+ K + D + + + C +
Sbjct: 77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT- 135
Query: 104 PEISWYLDGKKL 115
I W DG +
Sbjct: 136 --IKWLKDGSII 145
Score = 44.9 bits (105), Expect = 7e-07
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPV--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
TC I W+KDG + + + + + + K+ +G YQC E +
Sbjct: 126 LLTCGLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.1 bits (115), Expect = 2e-08
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C+ + W K + + D +I + ED G Y C+ E+
Sbjct: 39 LRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER 96
Query: 58 ESAQ 61
SA
Sbjct: 97 TSAM 100
Score = 38.5 bits (90), Expect = 6e-05
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 55 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
+ S + S L + P E +E G +C S + W+ +
Sbjct: 2 SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHET 57
Query: 115 LVNAE 119
L + +
Sbjct: 58 LRDGD 62
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 47.3 bits (113), Expect = 2e-08
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
C+ + W K+G+ + + +R I+ K D Y +
Sbjct: 27 LECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85
Query: 56 EQESAQ 61
Q SA+
Sbjct: 86 GQSSAK 91
Score = 35.4 bits (82), Expect = 7e-04
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
++ + D T G +C S + W+ +G++++
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGP 51
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 47.3 bits (113), Expect = 2e-08
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F + P W G+P+ D + + + + + G N +
Sbjct: 25 FEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83
Query: 58 ESAQ 61
+A
Sbjct: 84 SAAN 87
Score = 33.8 bits (78), Expect = 0.003
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+++ + G +F+ S P W L G+ L +
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASP 49
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 48.1 bits (114), Expect = 2e-08
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 21/82 (25%)
Query: 7 FTCKYEGNPVK---TISWMKDGKPVPDHNEP------------------VFRIDSVRKED 45
F K + + TI W K +I +
Sbjct: 27 FIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86
Query: 46 KGMYQCVIRNEQESAQASGELK 67
G Y+C + + + S +L+
Sbjct: 87 AGNYRCEVTYKDKFDSCSFDLE 108
Score = 28.4 bits (63), Expect = 0.35
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNP---TPEISWY 109
+ E T+ G + F P I W+
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWF 45
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 47.0 bits (112), Expect = 3e-08
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
+C+ ++W KDGK + + + + G Y C +Q
Sbjct: 31 LSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ 89
Query: 58 ESAQ 61
S +
Sbjct: 90 LSFR 93
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
G G+ + + + G + C + E++WY DGKKL ++
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS 55
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 47.0 bits (112), Expect = 3e-08
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------RIDSVRKEDKGMYQCVIRNE 56
T + + + W+K+G+ + I D YQCV+ E
Sbjct: 36 LTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 94
Query: 57 QESAQ 61
+ S +
Sbjct: 95 KCSTE 99
Score = 31.2 bits (71), Expect = 0.027
Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 74 PPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
++ ++ G + + E+ W +G+++
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEI 56
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 47.4 bits (112), Expect = 4e-08
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 38/99 (38%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-------------------------------- 34
G+P T+ W K
Sbjct: 38 LDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE 97
Query: 35 ------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
+F ++ KED+G+Y ++N Q + +K
Sbjct: 98 TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 35.9 bits (82), Expect = 9e-04
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 71 RFDPPVIKESFSDETLNP-----GPNYYFKCIASGNPTPEISWYLDGKK 114
R +PP I + G SG+P P + W +
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ 58
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 46.2 bits (110), Expect = 4e-08
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F + E VK + W + G + + + V D+G Y + + +
Sbjct: 28 FEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSK 86
Query: 58 ESAQ 61
Sbjct: 87 VKFD 90
Score = 32.3 bits (74), Expect = 0.010
Identities = 4/46 (8%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ + G F+ ++ W G + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASN 52
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 48.3 bits (115), Expect = 4e-08
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 21 WMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL--GG 70
+K+ +P F ID + G YQC R + S L+L G
Sbjct: 43 IIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTG 102
Query: 71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ P + L PG N C ++ P S +G+
Sbjct: 103 LYGKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGE 144
Score = 35.2 bits (81), Expect = 0.002
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
TC P S K+G+ + F + V G+Y+C +
Sbjct: 125 LTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYL 184
Query: 62 AS 63
S
Sbjct: 185 WS 186
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 46.5 bits (110), Expect = 4e-08
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 21/82 (25%)
Query: 7 FTCKYEGNPVK---TISWMKDG--------------KPVPDHNEPVF----RIDSVRKED 45
F+ + G + + W K D V+ I +
Sbjct: 24 FSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83
Query: 46 KGMYQCVIRNEQESAQASGELK 67
G Y+C + + + ++ L
Sbjct: 84 TGSYRCEVSTKDKFDCSNFNLT 105
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 47.7 bits (113), Expect = 6e-08
Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 27/137 (19%)
Query: 7 FTCKY-EGNPVKTISWMKDGKPVP--------------DHNEPVFR----------IDSV 41
++ G V I+W+ + + + + R + ++
Sbjct: 18 LPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNL 77
Query: 42 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SG 100
+ ED G Y+ I + + +S L++ + + S N + C
Sbjct: 78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH-SQLFQNMTCELHLTCSVEDA 136
Query: 101 NPTPEISWYLDGKKLVN 117
+ W G L +
Sbjct: 137 DDNVSFRWEALGNTLSS 153
Score = 38.0 bits (88), Expect = 2e-04
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 7 FTCKYE-GNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESAQAS 63
TC E + + W G + ++P + R + Y C+ N + S
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTL--SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS 185
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 45.9 bits (109), Expect = 8e-08
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
TC+ P + W KDG+ V + + + + +V+ ED G Y C I +E
Sbjct: 33 LTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES 91
Query: 58 ESAQ 61
S
Sbjct: 92 ASFT 95
Score = 31.3 bits (71), Expect = 0.024
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 94 FKCIASGNPTPEISWYLDGKKLVNAE 119
C P E+ W DG+++V +
Sbjct: 33 LTCELC-RPWAEVRWTKDGEEVVESP 57
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 45.4 bits (108), Expect = 1e-07
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C + W + + + ++R +D G Y C ++
Sbjct: 28 LRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT 86
Query: 58 ESAQ 61
SA
Sbjct: 87 TSAT 90
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
G P +E+ D + G +C+ S P + W L
Sbjct: 4 GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL 48
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 47.5 bits (113), Expect = 1e-07
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
F C+ + ++W KD + + + N+ I+ V+ +DKG Y +N
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 58 ESAQASGELK 67
+ + L
Sbjct: 562 GTKEEIVFLN 571
Score = 34.8 bits (80), Expect = 0.003
Identities = 9/67 (13%), Positives = 22/67 (32%)
Query: 53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
+R + + + P + G + F C + P ++W+ D
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD 520
Query: 113 KKLVNAE 119
++L +
Sbjct: 521 RELKQSV 527
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 45.1 bits (107), Expect = 1e-07
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
TC+ +W KDG+ V + V + + + +D G ++C
Sbjct: 30 LTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS 88
Query: 58 ESAQ 61
Sbjct: 89 AFFG 92
Score = 31.2 bits (71), Expect = 0.029
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 74 PPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I + T C S +WY DG+K+ +E
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESE 54
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 46.8 bits (111), Expect = 1e-07
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 12/109 (11%)
Query: 15 PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+G N+ F I + G Y C+ R + ++ S L
Sbjct: 33 GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL 92
Query: 67 KL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
L +D P + + G F C T +G+
Sbjct: 93 DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 139
Score = 37.2 bits (86), Expect = 4e-04
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 18 TISWMKDGKPVPDHNEP-----VFRIDSVRKEDKGMYQCVI-RNEQESAQASGELKLG-- 69
+K+G+ F + V +G Y+C N + S +KL
Sbjct: 131 MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 190
Query: 70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
G + + + D T + + + +
Sbjct: 191 GDIENTSL--APEDPTFPADTWGTYLLTTETGLQKDHALW 228
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 45.1 bits (107), Expect = 2e-07
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 17/88 (19%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
C E + V + W K + + D +I + D G Y C+
Sbjct: 28 LQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-- 83
Query: 58 ESAQASGELKLGGRFDPPVIKESFSDET 85
+ S L + P E +
Sbjct: 84 --ERTSATLTVRAL--PARFTEGSGPSS 107
Score = 34.3 bits (79), Expect = 0.002
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P + + + G +C S + W + L
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETL 47
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 47.2 bits (111), Expect = 2e-07
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 16/120 (13%)
Query: 7 FTCKYEGN---PVKTISWMKDGKPV---PDHNEPV---FRIDSVRKEDKGMYQCVIRNEQ 57
C+ EG T+ ++ K + P EP + R + C +
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165
Query: 58 ESAQAS------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYL 110
+L P + S L C G P E +L
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.8 bits (111), Expect = 2e-07
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 22/107 (20%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQE 58
C + + + + V V+ ED G+Y C E
Sbjct: 266 IRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF 325
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
+ S ELK+ + A P+
Sbjct: 326 NETLSVELKVYNFTLHG--------------HHDTLNAAADPWSHPQ 358
Score = 36.7 bits (85), Expect = 6e-04
Identities = 3/38 (7%), Positives = 12/38 (31%)
Query: 82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
S + G +C ++ +++++
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG 291
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 44.6 bits (106), Expect = 2e-07
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
FTCK +P T++W K + + I ++ K D Y C I
Sbjct: 28 FTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI---- 82
Query: 58 ESAQASGELKLGGRFDPPV 76
AQ+ +L + GR P
Sbjct: 83 GQAQSRAQLLVQGRRSGPS 101
Score = 34.6 bits (80), Expect = 0.001
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
E ++ + F C +P ++W +L +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASG 52
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 45.6 bits (108), Expect = 3e-07
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 15 PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-- 64
+G N+ F I + G Y C+ R + ++ S
Sbjct: 30 GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL 89
Query: 65 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+L + +D P + + G F C T +G+
Sbjct: 90 DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 136
Score = 29.4 bits (66), Expect = 0.22
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEP-----VFRIDSVRKEDKGMYQC 51
F C+ + +K+G+ F + V +G Y+C
Sbjct: 118 FYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 44.3 bits (104), Expect = 4e-07
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 7 FTCKYEGNP--VKTISWMKDGKPVPDHNEPVF-----------------RIDSVRKEDKG 47
FTC + T +W D + + D + R+ +V +G
Sbjct: 30 FTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG 89
Query: 48 MYQCVIRNEQESAQAS 63
YQCVI N S+ +
Sbjct: 90 XYQCVISNHFGSSYSV 105
Score = 41.2 bits (96), Expect = 5e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAE 119
F P I ++ G + F C A+ + ++ W D + L +AE
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAE 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 45.9 bits (109), Expect = 4e-07
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGMYQCVIRNEQ 57
F C+ +G+P I W+ K + + + +D G Y C+ N
Sbjct: 405 FVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464
Query: 58 ESAQASGEL 66
+ L
Sbjct: 465 GNDSMPAHL 473
Score = 42.8 bits (101), Expect = 6e-06
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 71 RFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
I++ ++ G F C A G+P P I W K LV+A+
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 43.5 bits (103), Expect = 5e-07
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
F + +P + W K+G+ + + +F I++ + D Y +E+
Sbjct: 28 FVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK 86
Query: 58 ESAQ 61
S +
Sbjct: 87 CSTE 90
Score = 32.7 bits (75), Expect = 0.008
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
K ++ G F + +P E+ WY +G+++ +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPST 52
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.8 bits (106), Expect = 8e-07
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 15 PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
+ K+ P P N+ F I S+ ++ G Y+C R+ +Q S L
Sbjct: 31 EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90
Query: 67 KL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
+L G + P + S + G + C S +P +
Sbjct: 91 ELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTFLLCKERAA 138
Score = 28.3 bits (63), Expect = 0.48
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 11/67 (16%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNE 56
C+ T K+ P ++ F + V G Y+C +
Sbjct: 119 LLCQSRSPMD-TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHG 177
Query: 57 QESAQAS 63
S
Sbjct: 178 FSHYLLS 184
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 42.9 bits (101), Expect = 1e-06
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 18/66 (27%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRIDSVRKEDKG 47
TC+ + N ++ W + +E + V D+G
Sbjct: 25 ILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84
Query: 48 MYQCVI 53
Y C +
Sbjct: 85 QYTCSL 90
Score = 25.2 bits (55), Expect = 4.0
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
G + P+ + T+ G C N + W ++
Sbjct: 5 GSQGQFPL----TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQT 47
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 44.3 bits (103), Expect = 2e-06
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 6/107 (5%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
TC + I+W D + I D G Y C E S L
Sbjct: 26 LTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHS----L 79
Query: 67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
L + + + + P + +C A W+L
Sbjct: 80 LLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTI 126
Score = 28.2 bits (61), Expect = 0.70
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
V PG C I+W LD V
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEV 46
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 43.3 bits (102), Expect = 2e-06
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG--ELKLGGRF 72
V K ++ V I ++++ G Y+C +N + S EL G F
Sbjct: 34 GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF 92
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
P + ++ G + +C + + + Y +G
Sbjct: 93 AKPSLSAQPG-PAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPA 133
Score = 32.1 bits (73), Expect = 0.026
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
C+ + K+G P P N F I +V G Y+C + ++
Sbjct: 113 LQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYL 171
Query: 62 AS 63
S
Sbjct: 172 WS 173
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 43.3 bits (102), Expect = 2e-06
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58
C+ + +K+G P P N+ F I S+ + G Y+C +
Sbjct: 24 IRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
Query: 59 SAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
++ S L+L G ++ P + S + G N +C S +G
Sbjct: 83 WSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRFILTEEGD 137
Score = 26.8 bits (59), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 20 SWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQC 51
SW D + P + +F + V + M +C
Sbjct: 141 SWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 43.4 bits (101), Expect = 3e-06
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 15/123 (12%)
Query: 7 FTCKYEG-NPVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
TC+ + ++ W + D V + + G CV + Q
Sbjct: 27 LTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 86
Query: 62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-----TPEISWYLDGKKLV 116
+ +L + + + S L PG + C A S + G++L
Sbjct: 87 HTVQLLVYAFPNQLTV----SPAALVPG-DPEVACTAHKVTPVDPNALSFSLLVGGQELE 141
Query: 117 NAE 119
A+
Sbjct: 142 GAQ 144
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 42.2 bits (99), Expect = 3e-06
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 17/78 (21%)
Query: 7 FTCKYEGNPV-KTISWMKDGKPVPDHNEPVFR---------------IDSVRKEDKG-MY 49
C P I+W + + I ++ + D +Y
Sbjct: 33 IKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY 92
Query: 50 QCVIRNEQESAQASGELK 67
C N S LK
Sbjct: 93 NCTAWNSFGSDTEIIRLK 110
Score = 39.5 bits (92), Expect = 3e-05
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 59 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 115
S+ +SG L + G PP+I S + G KC P P+ I+W L
Sbjct: 2 SSGSSGTLTVNG---PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.1 bits (96), Expect = 7e-06
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 18/68 (26%)
Query: 7 FTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRIDSVRKEDKGM 48
C ++ W+ N+ + +V +D+G+
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGV 80
Query: 49 YQCVIRNE 56
Y+C+ ++
Sbjct: 81 YKCLHYSD 88
Score = 26.9 bits (59), Expect = 1.2
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
+ T+ G KC+ S + W +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTI 43
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 40.9 bits (95), Expect = 8e-06
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 22/90 (24%)
Query: 7 FTCKYEG--NPVKTISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKG 47
C N +W ID V + D+G
Sbjct: 28 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 87
Query: 48 MYQCVIRNEQESAQASGELKLGGRFDPPVI 77
+Y C + + + S +++ + P +
Sbjct: 88 LYTCAASSGLMTKKNSTFVRV---HEKPFV 114
Score = 26.6 bits (58), Expect = 1.4
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 85 TLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNAE 119
L+ G C A + +W K + +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 55
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 41.4 bits (97), Expect = 1e-05
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 20 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----ELKLGGRFDP 74
+ G+ ++ F I + ++ G Y+C Q S ++ + G ++
Sbjct: 49 TLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEK 108
Query: 75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
P + + T+ G N C +S + +G+
Sbjct: 109 PSL-SAQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGE 145
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 40.7 bits (95), Expect = 2e-05
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 12 EGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----EL 66
EG + G+ ++ F I + ++ G Y+C Q S ++
Sbjct: 42 EGKF--KDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI 99
Query: 67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
+ G ++ P + T+ G + C +S + +G+
Sbjct: 100 VITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRSSYDMYHLSREGE 144
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 39.7 bits (93), Expect = 5e-05
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
C+ + ++SW+ V H R +V +D GMY C++ N
Sbjct: 361 LKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS 419
Query: 57 QESAQASGEL 66
+ AS L
Sbjct: 420 VGNTTASATL 429
Score = 37.4 bits (87), Expect = 4e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
PVI E +D + G KC AS +SW ++
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHG 385
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 37.3 bits (86), Expect = 9e-05
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESA 60
TC + + + W K+G+ +P ++ + ED G Y C ++
Sbjct: 19 LTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 39.3 bits (92), Expect = 1e-04
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
C+ P+ ++ W+ V H R V D G+Y C++ N
Sbjct: 372 LKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429
Query: 57 QESAQASGEL 66
++ AS L
Sbjct: 430 AGNSNASAYL 439
Score = 37.0 bits (86), Expect = 6e-04
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
P I ++ D ++ G KC P + W L +++
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA 395
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.1 bits (90), Expect = 1e-04
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 7 FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKEDKGMYQCVIRNEQES 59
TC E T+ W+ H + SV+ D G Y C
Sbjct: 26 LTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG 85
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 38.3 bits (89), Expect = 2e-04
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 15 PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-- 64
+ ++ K P + F I S+ E G Y+C ++ S
Sbjct: 31 ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDP 90
Query: 65 -ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
EL + G + P + S +N G N +C S +G+
Sbjct: 91 LELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDGFILCKEGE 138
Score = 28.3 bits (63), Expect = 0.50
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 12/68 (17%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRN 55
C + K+G+ +F + V + Y+C +
Sbjct: 120 LQCDSQVAFD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178
Query: 56 EQESAQAS 63
+ S
Sbjct: 179 SNSPYEWS 186
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 37.5 bits (86), Expect = 3e-04
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 18/66 (27%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------RIDSVRKEDKG 47
C+ + + ++ W + E I +V D+G
Sbjct: 57 VLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEG 116
Query: 48 MYQCVI 53
Y C I
Sbjct: 117 EYTCSI 122
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 36.3 bits (83), Expect = 4e-04
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 11/65 (16%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
TC P I W + K + + + E G Y C R
Sbjct: 25 ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 82
Query: 57 QESAQ 61
+
Sbjct: 83 KPEDA 87
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.0 bits (83), Expect = 5e-04
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 25/96 (26%)
Query: 7 FTCKYEGNP--VKTISWMKDGKPVPDHNE-------PVFR------------IDSVRKED 45
C V ++W + + + N P F+ + S+ D
Sbjct: 23 LQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVND 82
Query: 46 KGMYQCVIR-NEQESAQASGELKLGGRFDPPVIKES 80
G Y C+ + L++ + V +
Sbjct: 83 TGEYFCIYHTYPDGTYTGRIFLEV---LESSVAEHG 115
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 36.8 bits (85), Expect = 6e-04
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 13/117 (11%)
Query: 7 FTCKYEGNPVKTISWMKDGK-PVPDHNEPV----FRIDSVRKEDKGMYQCVIRNEQESAQ 61
C Y K+ + +P + + F + V G Y C +
Sbjct: 43 LRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTG 101
Query: 62 ASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
S + + G P + + G +C S + +G
Sbjct: 102 WSAPSNPVVIMVTGNHRKPSLLAH-PGPLVKSGERVILQC-WSDIMFEHFFLHKEGI 156
Score = 36.0 bits (83), Expect = 0.001
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 17/111 (15%)
Query: 18 TISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG--- 64
K+G ++ F I + G Y+C Q S
Sbjct: 148 HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD 207
Query: 65 --ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
++ + G ++ P + + G + C + + +G
Sbjct: 208 PLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSRSSYDM-YHLSREGG 256
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 36.2 bits (83), Expect = 0.001
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 36 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
R+ ++ E+ G Y+C + AQ + +L+ P + + + +
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE---VVASPASRLLLDQVGMKENED-KYM 139
Query: 96 CIASG-NPTP-EISWYLDGKKL 115
C +SG P I+W +K
Sbjct: 140 CESSGFYPEAINITWEKQTQKF 161
Score = 26.6 bits (58), Expect = 2.2
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 26/98 (26%)
Query: 18 TISWMKDGKPVPDHNEPV---------------------FRIDSVRKEDKGMYQCVIRNE 56
I+W K + P E +++S +++ +YQCV+R+
Sbjct: 151 NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210
Query: 57 --QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY 92
+++ L + + +D ++
Sbjct: 211 SLHTPLRSNFTLTAAR---HSLSETEKTDNFSAAAHHH 245
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 35.7 bits (82), Expect = 0.001
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
RI +VR D+G Y C R+ +A+ ELK
Sbjct: 88 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 34.7 bits (80), Expect = 0.001
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 12 EGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
E + + P +E FRIDSV + + G Y+C+ + ++ S L+L
Sbjct: 44 ESRSTYNDTEDV-SQASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLEL 99
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 35.6 bits (81), Expect = 0.002
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 8 TCKYEGNPVKTISWMKDGKPVPDHNEP---VFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
E P T SW + D + ++ C ++ +
Sbjct: 148 PGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTER 207
Query: 65 ELKL 68
++L
Sbjct: 208 TVQL 211
Score = 34.8 bits (79), Expect = 0.003
Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 5/89 (5%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS-DETLN 87
I R ED G Y + ++ + + KL + K E L
Sbjct: 77 VQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE 136
Query: 88 PGPNYYFKCIAS----GNPTPEISWYLDG 112
G C P SW +
Sbjct: 137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.4 bits (78), Expect = 0.002
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 28 VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
V + P R+ V +D G Y C + + + K
Sbjct: 86 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 34.3 bits (79), Expect = 0.002
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 20 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 79
S + P E F I V + G Y C+ ++ S L+L VIKE
Sbjct: 49 STFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLEL------KVIKE 102
Query: 80 SFSDETLNPGP 90
+ P P
Sbjct: 103 NVIQT---PAP 110
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.1 bits (78), Expect = 0.003
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
+ +++ D G YQC ++ A L
Sbjct: 92 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 122
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 34.1 bits (78), Expect = 0.006
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 16/118 (13%)
Query: 18 TISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQCVIRNEQESAQAS 63
T+ W K+G + D V ++ R++ C + +
Sbjct: 150 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 209
Query: 64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVNAE 119
+ + + C P +++W +G
Sbjct: 210 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTET 267
Score = 31.1 bits (70), Expect = 0.055
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQA----SGELKLGGRFDPPVIKESFSDETLNPGPNY 92
I ++ D G Y CV + + S +L R P S P
Sbjct: 77 SISNITPADAGTYYCV-KFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 93 YFKCIASG-NPTP-EISWYLDGKKLVNAE 119
F C + G +P + W+ +G +L + +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQ 164
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.7 bits (75), Expect = 0.007
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 20 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
S + P E F I V + G Y C+ ++ S L+L
Sbjct: 49 STFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLEL 97
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 31.8 bits (72), Expect = 0.010
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 17 KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 51
+I+W++ + + + +G+Y+C
Sbjct: 18 TSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.6 bits (74), Expect = 0.011
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
I ++ D G + C ++N + + ++ L
Sbjct: 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 32.1 bits (73), Expect = 0.014
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 28/76 (36%)
Query: 9 CKYEGNPV-----KTISWMK----------DGKPVPDHNEPVF-------------RIDS 40
C++ + + W GK D + R+ +
Sbjct: 16 CQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHN 75
Query: 41 VRKEDKGMYQCVIRNE 56
++ +DKG+YQC+I ++
Sbjct: 76 LQIKDKGLYQCIIHHK 91
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.029
Identities = 12/115 (10%), Positives = 21/115 (18%), Gaps = 27/115 (23%)
Query: 7 FTCKYE-------GNPVKTISWMKDGKPVPDHNEPVFRIDSVR------KEDKGMYQCVI 53
C + I W + +P + + C I
Sbjct: 23 AVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNI 82
Query: 54 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
+ Q + + L P CI + W
Sbjct: 83 LTFGQLEQNVYGITI--------------ISGLPPEKPKNLSCIVNEGKKMRCEW 123
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 31.4 bits (72), Expect = 0.042
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 30 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
H E + I SV +G + ++N ES Q +G +
Sbjct: 295 QHKEEAWVIGSVVARAEGSPRVKVKNLIESMQINGSV 331
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.4 bits (69), Expect = 0.051
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 7/51 (13%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQC 51
C + +G D + F ED G YQC
Sbjct: 24 LRCHLP-RMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 31.2 bits (70), Expect = 0.059
Identities = 14/120 (11%), Positives = 30/120 (25%), Gaps = 19/120 (15%)
Query: 18 TISWMKDGKPVPDHNEP--------------VFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
I+W++DG+ + + Y C + + + + S
Sbjct: 42 QITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDS 101
Query: 64 GELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE----ISWYLDGKKLVNA 118
+ S L + C+ + ++W K VN
Sbjct: 102 TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH 161
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 31.3 bits (69), Expect = 0.061
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCV 52
C + N + W + + I ++ + D G+YQC+
Sbjct: 552 ELKCSQKSNLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCL 604
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 31.1 bits (70), Expect = 0.065
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN----EQESAQASGELKLGG 70
P W + +P+ + + +V +D+G+++C N E +S ++ G
Sbjct: 416 PQGGGPWDSVARVLPNGSL---FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG 472
Query: 71 RFDPPVIKESFSDETLNPG-PNYYFKCIASGN-PTPEISWYLDGKKLV 116
+ P I +S S+ L G PN C++ G+ P +SW+LDGK LV
Sbjct: 473 K---PEIVDSASE--LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLV 515
Score = 29.5 bits (66), Expect = 0.25
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 KFFTCKYEGN-PVKTISWMKDGKP-VPDHNEPVFRIDSVRKEDKGMY 49
K TC EG+ P T+SW DGKP VP+ + + R + G++
Sbjct: 490 KVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLF 536
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 30.2 bits (68), Expect = 0.074
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQ 61
I +VRKEDKG Y + E E+
Sbjct: 76 HISNVRKEDKGTYYMRVLRETENEL 100
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 30.8 bits (68), Expect = 0.10
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCV 52
+ +C E T SW EP + I+++ + G Y C
Sbjct: 519 YLSCPMESRHA-TYSWRHKENVEQ-SCEPGHQSPNCILFIENLTAQQYGHYFCE 570
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 29.6 bits (66), Expect = 0.13
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
+ D + G + F S W+L+G++L + E
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNE 51
Score = 25.7 bits (56), Expect = 3.0
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 22/75 (29%)
Query: 7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG 47
F+ +W +G+ + + + +V+ +D G
Sbjct: 28 FSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSG 85
Query: 48 MY-QCVIRNEQESAQ 61
Q+SA
Sbjct: 86 ALVGFSCPGVQDSAA 100
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 29.1 bits (65), Expect = 0.16
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 37 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
+I++++ +D+ Y C + + K+
Sbjct: 81 QINTLQMDDRNHYTCEVTWQTPDGNQVIRDKI 112
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 29.1 bits (65), Expect = 0.16
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 31/91 (34%)
Query: 9 CKYEG---NPVKTISWMKDGKPVPDHNEPVFR---------------------------- 37
C Y + + W K P + R
Sbjct: 16 CSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLI 75
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
I +V +D G Y C I+ ELKL
Sbjct: 76 IKNVTLDDHGTYCCRIQFPGLMNDKKLELKL 106
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.4 bits (65), Expect = 0.17
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 23/83 (27%)
Query: 7 FTCKYEGNPV---KTISWMKDGKPV---------------PDHNEPVF----RIDSVRKE 44
K G + TI W K GK + + V+ I V
Sbjct: 32 VVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90
Query: 45 DKGMYQCVIRNEQESAQASGELK 67
D+G Y+ ++ + +
Sbjct: 91 DRGYYRLEVKAKDTCDSCGFNID 113
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 28.3 bits (63), Expect = 0.29
Identities = 11/89 (12%), Positives = 19/89 (21%), Gaps = 29/89 (32%)
Query: 9 CKYEGNP-VKTISWMKDGKPVPDHNEPVF----------------------------RID 39
C Y + T W + P + I+
Sbjct: 19 CTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIE 78
Query: 40 SVRKEDKGMYQCVIRNEQESAQASGELKL 68
+ + D G+Y C + L
Sbjct: 79 NSVESDSGLYCCRVEIPGWFNDQKVTFSL 107
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.0 bits (62), Expect = 0.43
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 21/77 (27%)
Query: 6 FFTCKYEGNPVKTISWMKDGKP--------VPDHNEPVFR-------------IDSVRKE 44
+ K ++W + E F+ I V+KE
Sbjct: 24 LNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKE 83
Query: 45 DKGMYQCVIRNEQESAQ 61
D Y + + + Q
Sbjct: 84 DNSTYIMRVLKKTGNEQ 100
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 28.0 bits (63), Expect = 0.46
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 39 DSVRKEDKGMYQCVIRN 55
++ D G+Y+CVI +
Sbjct: 81 TDLQVTDSGLYRCVIYH 97
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.9 bits (62), Expect = 0.55
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 38 IDSVRKEDKGMYQCVIRN 55
+ +++ ED G+YQCVI
Sbjct: 85 MVNLQVEDSGLYQCVIYQ 102
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 27.9 bits (63), Expect = 0.66
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 46 KGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESF 81
KG Q IR+ ++ AQA + GGR VI E
Sbjct: 162 KG--QTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGV 196
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 27.3 bits (61), Expect = 0.75
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFR 37
P +I+ MKDG P+
Sbjct: 33 PKISITLMKDGVPMEGAQYSDMS 55
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B
1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B
1i1f_B 1i1y_B 1duz_B* ...
Length = 100
Score = 26.9 bits (60), Expect = 1.0
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFR 37
+ +K+G+ +
Sbjct: 34 SDIEVDLLKNGERIEKVEHSDLS 56
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 26.5 bits (59), Expect = 1.0
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 15 PVKTISWMKDGKPVPDHNE 33
P +I +K+G+ + D +
Sbjct: 33 PDISIELLKNGEVIADAQQ 51
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.1 bits (60), Expect = 1.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 37 RIDSVRKEDKGMYQCVIRN 55
R+ +++ ED G+YQCVI
Sbjct: 79 RMVNLQVEDSGLYQCVIYQ 97
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 26.5 bits (58), Expect = 1.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 37 RIDSVRKEDKGMYQCVIR 54
I++ D G Y CV+
Sbjct: 77 TIENTVVGDGGPYCCVVE 94
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 26.5 bits (58), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 37 RIDSVRKEDKGMYQC 51
+ + ED+G Y C
Sbjct: 96 ALHGLTVEDEGNYTC 110
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 26.6 bits (59), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFR 37
P +I+ MKDG P+
Sbjct: 53 PKISITLMKDGVPMEGAQYSDMS 75
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 26.6 bits (58), Expect = 1.9
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 15 PVKTISWMKDGKPVPDHNE 33
P+ T++W PV
Sbjct: 129 PMLTVNWQHHSVPVEGFGP 147
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 26.2 bits (58), Expect = 2.0
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFR 37
+ +K+G+ +
Sbjct: 53 SDIEVDLLKNGERIEKVEHSDLS 75
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high
resolution, anisotropic AN refinement, immune system;
HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB:
1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L
1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L*
1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 25.8 bits (57), Expect = 2.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 15 PVKTISWMKDGKPVPDH 31
P I +K+GK +P
Sbjct: 33 PHIEIQMLKNGKKIPKV 49
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 26.5 bits (59), Expect = 2.6
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 18/111 (16%)
Query: 18 TISWMKDGKPVPD--HNEPVFRID---------SVRKEDKGMYQCVIRNEQESAQASGEL 66
+ +K+G+ + H++ F D +K Y C + + +
Sbjct: 36 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV--NHVTLSQPKIV 93
Query: 67 KLGGRFDPPVIKESFSDETLNPGPN--YYFKCIASGNPT-PE--ISWYLDG 112
K D S SD+ + + N + S +L
Sbjct: 94 KWDRDMDDDDKGSSSSDDDDKEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 144
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 25.9 bits (57), Expect = 2.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 15 PVKTISWMKDGKPVPDH 31
P I +K+GK +P
Sbjct: 53 PHIEIQMLKNGKKIPKV 69
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 25.7 bits (56), Expect = 2.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 37 RIDSVRKEDKGMYQCVI 53
+ +R+ED G Y C I
Sbjct: 87 TMTDLREEDSGHYWCRI 103
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 25.6 bits (56), Expect = 2.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 37 RIDSVRKEDKGMYQC 51
R+ +R ED+G Y C
Sbjct: 82 RMFGLRVEDEGNYTC 96
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 26.0 bits (57), Expect = 3.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 15 PVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 50
PV I+W+++ K V D V+ D +
Sbjct: 149 PVINITWLRNSKSVADG---VYETSFFVNRD-YSFH 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 3.5
Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 40/127 (31%)
Query: 15 PVKTISW-----MKDG----KPVP-----DHNEPV-----------FRIDSVRKEDKGMY 49
V T S+ +++ P P +EP + V G +
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 50 QCVIR---NEQESAQASGE------LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
V+ E E+ G KL D ++K + E + NY I +
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK---TKELIK---NYITARIMAK 134
Query: 101 NPTPEIS 107
P + S
Sbjct: 135 RPFDKKS 141
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 25.3 bits (55), Expect = 3.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 37 RIDSVRKEDKGMYQCVIRN 55
I + + D G+Y C I
Sbjct: 76 TISNTNRGDSGVYCCRIEV 94
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 25.1 bits (55), Expect = 4.3
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 12/44 (27%)
Query: 80 SFSDETLNPGPNYYFKCIA---SGN---------PTPEISWYLD 111
+++D + G YY+ A P++ +
Sbjct: 58 NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLEHHHH 101
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 24.9 bits (54), Expect = 4.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 37 RIDSVRKEDKGMYQCVI 53
I +R ED G Y+ I
Sbjct: 75 VISDLRMEDAGDYKADI 91
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 25.2 bits (54), Expect = 4.7
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 9 CKYEGN-----PVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCVIRNEQESAQ 61
CK G + SW ++ N F + V D G Y+C + +
Sbjct: 47 CKLNGTTCVKLEDRQTSWKEEK------NISFFILHFEPVLPNDNGSYRCSANFQSNLIE 100
Query: 62 A 62
+
Sbjct: 101 S 101
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 24.8 bits (54), Expect = 5.2
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQC 51
DH + ++ ED G Y
Sbjct: 74 MDHKVCNLLLKDLKPEDSGTYNF 96
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 25.2 bits (54), Expect = 5.4
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 9 CKYEGN--------PVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCVIRNE 56
CK+ G P SW ++ + PVF + D G Y C
Sbjct: 50 CKHNGTIWVPLEVGPQLYTSWEENR------SVPVFVLHFKPIHLSDNGSYSCSTNFN 101
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 24.9 bits (54), Expect = 5.5
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
P I R D G Y +
Sbjct: 83 PQTKNCTLSIRDARMSDAGRYFFRMEKG 110
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 25.2 bits (55), Expect = 5.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 15 PVKTISWMKDGKPVPDHNEPV 35
PV I+W+ +G+ V +
Sbjct: 118 PVVNITWLSNGQSVTEGVSET 138
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 24.8 bits (54), Expect = 5.9
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 29 PDHNEPVFRIDSVRKEDKGMYQCVI 53
P++ V I + ++D G Y+C +
Sbjct: 70 PENGTFVVNIAQLSQDDSGRYKCGL 94
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 25.3 bits (56), Expect = 6.1
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 16/52 (30%)
Query: 18 TISWMKDGKPVPDHNEPVFRID---------------SVRKEDKGMYQCVIR 54
++W++DG+ VP + V +D Y C ++
Sbjct: 212 AVTWLRDGREVPPSPA-LSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQ 262
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 25.2 bits (55), Expect = 6.3
Identities = 2/32 (6%), Positives = 10/32 (31%)
Query: 18 TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMY 49
+ W++ + +P + + +
Sbjct: 140 LVRWLQGSQELPREKYLTWASRQEPSQGTTTF 171
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 25.1 bits (55), Expect = 6.5
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 15 PVKTISWMKDGKPVPDHNEPV 35
PV ++W+ +G+ V +
Sbjct: 115 PVLNVTWLCNGELVTEGVAES 135
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 24.8 bits (53), Expect = 8.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 36 FRIDSVRKEDKGMYQCVIRNE 56
F + + K D G Y+C+IR E
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTE 245
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 24.7 bits (54), Expect = 8.3
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 38 IDSVRKEDKGMYQCVIRNEQESAQASG---ELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
I V ED G+Y CV + +G ELK P V S E L
Sbjct: 117 ISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK-RADAAPTVSIFPPSSEQL-TSGGASV 174
Query: 95 KCIASG-NPTP-EISWYLDGK 113
C + P + W +DG
Sbjct: 175 VCFLNNFYPKDINVKWKIDGS 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.423
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,904,558
Number of extensions: 102328
Number of successful extensions: 1245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 547
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)