Query psy12726
Match_columns 558
No_of_seqs 310 out of 2248
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:06:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 6.3E-76 1.4E-80 605.9 18.5 286 103-554 48-351 (674)
2 KOG0923|consensus 100.0 1.1E-71 2.4E-76 567.3 15.5 291 101-556 260-569 (902)
3 KOG0924|consensus 100.0 5.1E-68 1.1E-72 541.1 14.0 290 101-552 351-658 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 3.3E-66 7.1E-71 564.6 17.4 284 101-552 45-348 (845)
5 KOG0926|consensus 100.0 2E-65 4.4E-70 529.9 16.8 371 102-552 252-665 (1172)
6 KOG0925|consensus 100.0 3.5E-62 7.6E-67 482.8 11.8 282 102-551 43-347 (699)
7 KOG0920|consensus 100.0 6.1E-62 1.3E-66 528.2 14.3 327 94-554 161-507 (924)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.6E-49 7.7E-54 447.0 18.0 282 100-553 61-366 (1283)
9 PRK11131 ATP-dependent RNA hel 100.0 4.8E-48 1E-52 436.2 16.2 283 99-553 67-373 (1294)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.7E-46 2.1E-50 410.6 17.8 279 106-553 2-298 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.3E-44 2.9E-49 402.6 19.3 279 105-552 4-300 (812)
12 KOG0924|consensus 100.0 1.9E-40 4.1E-45 339.6 11.6 214 4-218 762-977 (1042)
13 KOG0921|consensus 100.0 9E-40 1.9E-44 342.8 4.6 346 100-556 372-739 (1282)
14 KOG0922|consensus 100.0 9.1E-38 2E-42 323.3 14.6 217 3-219 453-672 (674)
15 KOG0925|consensus 100.0 1.7E-35 3.6E-40 293.7 17.8 215 2-217 450-670 (699)
16 PHA02653 RNA helicase NPH-II; 100.0 2.4E-34 5.2E-39 312.7 16.6 111 221-333 289-410 (675)
17 PRK11131 ATP-dependent RNA hel 100.0 1.8E-32 3.9E-37 310.3 19.9 211 4-214 480-697 (1294)
18 KOG0923|consensus 100.0 9E-33 1.9E-37 283.1 14.8 217 1-217 667-886 (902)
19 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.4E-30 1.2E-34 291.4 19.8 223 5-235 472-701 (1283)
20 KOG0926|consensus 99.9 1.7E-23 3.6E-28 219.0 10.7 217 3-219 768-1028(1172)
21 KOG0920|consensus 99.9 7.5E-23 1.6E-27 223.9 15.3 209 4-212 611-847 (924)
22 COG1643 HrpA HrpA-like helicas 99.7 4.4E-17 9.5E-22 179.6 8.1 208 3-210 451-707 (845)
23 TIGR01970 DEAH_box_HrpB ATP-de 99.6 4.1E-15 8.9E-20 166.5 15.4 189 3-235 399-591 (819)
24 PRK11664 ATP-dependent RNA hel 99.6 1.7E-14 3.6E-19 161.9 14.1 177 3-235 402-584 (812)
25 PF04408 HA2: Helicase associa 99.5 5.7E-15 1.2E-19 123.7 5.9 76 3-78 15-102 (102)
26 KOG0921|consensus 99.5 5.4E-15 1.2E-19 157.4 7.0 190 221-550 519-741 (1282)
27 PF07717 OB_NTP_bind: Oligonuc 99.5 1.7E-13 3.6E-18 117.7 8.7 101 112-212 1-114 (114)
28 PRK11776 ATP-dependent RNA hel 99.4 4.3E-13 9.2E-18 143.8 11.7 63 492-554 267-329 (460)
29 PRK01172 ski2-like helicase; P 99.4 5.7E-13 1.2E-17 149.3 11.9 113 221-336 133-254 (674)
30 smart00847 HA2 Helicase associ 99.4 2.3E-13 4.9E-18 112.1 6.3 74 4-78 16-92 (92)
31 PTZ00110 helicase; Provisional 99.3 1.6E-11 3.5E-16 133.6 11.2 58 492-549 402-459 (545)
32 PRK11634 ATP-dependent RNA hel 99.3 2.4E-11 5.2E-16 133.7 12.2 54 492-545 270-323 (629)
33 PRK11192 ATP-dependent RNA hel 99.3 3.7E-11 8E-16 128.0 12.5 55 492-546 270-324 (434)
34 PRK04837 ATP-dependent RNA hel 99.2 8.6E-11 1.9E-15 124.7 13.1 64 492-555 280-343 (423)
35 PRK10590 ATP-dependent RNA hel 99.2 1.4E-10 2.9E-15 124.2 13.2 56 492-547 270-325 (456)
36 PRK04537 ATP-dependent RNA hel 99.1 5.1E-10 1.1E-14 122.4 13.5 57 492-548 282-338 (572)
37 PRK01297 ATP-dependent RNA hel 99.1 3.3E-10 7.1E-15 122.0 11.7 56 492-547 360-415 (475)
38 TIGR03158 cas3_cyano CRISPR-as 99.1 1.4E-09 3.1E-14 112.3 15.7 45 492-542 299-343 (357)
39 PTZ00424 helicase 45; Provisio 99.1 4.9E-10 1.1E-14 118.2 12.0 55 492-546 292-346 (401)
40 PRK11057 ATP-dependent DNA hel 99.1 7.6E-10 1.6E-14 122.2 12.6 63 492-554 261-323 (607)
41 PLN00206 DEAD-box ATP-dependen 99.0 6.3E-10 1.4E-14 120.7 10.4 54 492-545 393-446 (518)
42 TIGR00614 recQ_fam ATP-depende 99.0 1.8E-09 3.9E-14 115.9 12.9 63 492-554 251-313 (470)
43 KOG0331|consensus 98.9 7.3E-09 1.6E-13 108.4 13.0 51 492-542 366-416 (519)
44 TIGR02621 cas3_GSU0051 CRISPR- 98.9 5.7E-09 1.2E-13 115.9 12.8 49 495-543 298-362 (844)
45 COG0513 SrmB Superfamily II DN 98.9 1.4E-08 3.1E-13 109.6 13.9 180 221-554 172-360 (513)
46 TIGR01587 cas3_core CRISPR-ass 98.9 1E-08 2.2E-13 106.4 11.9 50 492-541 249-302 (358)
47 TIGR00580 mfd transcription-re 98.9 1.5E-08 3.3E-13 115.3 13.0 49 492-540 687-735 (926)
48 PRK00254 ski2-like helicase; P 98.9 3.3E-08 7.1E-13 111.7 15.1 51 493-543 297-347 (720)
49 TIGR03817 DECH_helic helicase/ 98.8 2E-08 4.4E-13 112.9 12.8 55 492-546 304-358 (742)
50 PRK10689 transcription-repair 98.8 1.7E-08 3.7E-13 117.5 12.4 49 492-540 836-884 (1147)
51 TIGR00643 recG ATP-dependent D 98.8 1.4E-08 3.1E-13 112.6 10.6 53 491-543 482-534 (630)
52 PRK02362 ski2-like helicase; P 98.8 2.8E-08 6.1E-13 112.6 13.0 50 493-542 305-354 (737)
53 PRK10917 ATP-dependent DNA hel 98.8 2.8E-08 6E-13 111.2 11.9 54 492-545 506-559 (681)
54 PRK13767 ATP-dependent helicas 98.7 4.2E-08 9E-13 112.6 11.6 53 492-544 315-367 (876)
55 TIGR01389 recQ ATP-dependent D 98.7 7E-08 1.5E-12 106.8 11.5 62 492-553 249-310 (591)
56 KOG0336|consensus 98.6 1.5E-07 3.2E-12 93.7 10.0 81 221-302 365-452 (629)
57 PLN03137 ATP-dependent DNA hel 98.6 2E-07 4.4E-12 105.6 12.0 64 492-555 705-768 (1195)
58 PRK09751 putative ATP-dependen 98.5 6.4E-07 1.4E-11 105.5 13.1 53 492-544 302-354 (1490)
59 PRK09694 helicase Cas3; Provis 98.5 7E-07 1.5E-11 101.0 12.1 49 492-541 588-644 (878)
60 KOG0330|consensus 98.5 5.2E-07 1.1E-11 89.5 8.6 65 491-555 324-388 (476)
61 KOG0333|consensus 98.5 2.7E-06 5.9E-11 87.5 14.0 63 492-554 542-604 (673)
62 KOG0339|consensus 98.2 9.7E-06 2.1E-10 83.1 10.5 55 491-545 492-546 (731)
63 PF07717 OB_NTP_bind: Oligonuc 98.1 3.7E-07 8E-12 78.2 -1.1 83 351-433 32-114 (114)
64 KOG0332|consensus 98.1 5.3E-05 1.2E-09 75.1 13.2 52 492-543 355-406 (477)
65 PRK09401 reverse gyrase; Revie 98.0 1.9E-05 4.2E-10 92.6 10.3 50 492-546 356-410 (1176)
66 KOG0345|consensus 98.0 3.3E-05 7.1E-10 78.7 9.4 53 491-543 281-333 (567)
67 COG4098 comFA Superfamily II D 98.0 0.0011 2.4E-08 65.4 19.4 148 109-287 104-266 (441)
68 KOG0335|consensus 98.0 3.4E-05 7.4E-10 80.0 9.6 52 491-542 361-412 (482)
69 KOG0340|consensus 97.9 0.0001 2.2E-09 72.8 11.7 53 492-544 279-331 (442)
70 TIGR01054 rgy reverse gyrase. 97.8 8.1E-05 1.8E-09 87.6 10.2 50 492-545 354-408 (1171)
71 smart00490 HELICc helicase sup 97.8 1.8E-05 3.9E-10 62.6 3.2 54 491-544 11-64 (82)
72 TIGR00595 priA primosomal prot 97.7 0.00017 3.7E-09 77.9 10.7 50 491-540 284-335 (505)
73 COG1111 MPH1 ERCC4-like helica 97.7 0.00033 7.1E-09 72.6 11.1 43 499-541 407-449 (542)
74 KOG0328|consensus 97.7 0.00035 7.6E-09 66.9 10.3 63 492-554 291-353 (400)
75 PF00271 Helicase_C: Helicase 97.6 1.7E-05 3.8E-10 62.6 1.3 55 491-545 7-61 (78)
76 KOG0338|consensus 97.6 0.00016 3.5E-09 74.5 7.6 63 492-554 451-513 (691)
77 PHA02558 uvsW UvsW helicase; P 97.6 0.0007 1.5E-08 73.5 13.0 50 492-541 369-419 (501)
78 PRK14701 reverse gyrase; Provi 97.6 0.00042 9E-09 83.7 12.1 51 491-546 357-412 (1638)
79 KOG0347|consensus 97.5 0.00016 3.5E-09 75.1 5.9 51 492-542 488-538 (731)
80 PRK12898 secA preprotein trans 97.4 0.00087 1.9E-08 73.5 11.1 62 492-555 498-567 (656)
81 PRK13766 Hef nuclease; Provisi 97.4 0.0013 2.9E-08 75.5 12.9 52 492-543 390-449 (773)
82 KOG0326|consensus 97.3 0.0006 1.3E-08 66.4 6.6 63 492-554 347-409 (459)
83 KOG0342|consensus 97.2 0.0014 3.1E-08 67.6 9.1 58 491-548 354-411 (543)
84 PRK05580 primosome assembly pr 97.2 0.0024 5.1E-08 71.7 11.9 50 491-540 452-503 (679)
85 KOG0343|consensus 97.2 0.002 4.3E-08 67.3 9.4 51 491-541 339-389 (758)
86 COG1201 Lhr Lhr-like helicases 97.1 0.0067 1.4E-07 68.0 13.4 107 221-329 147-264 (814)
87 COG1203 CRISPR-associated heli 97.1 0.0042 9.1E-08 70.4 12.0 53 221-275 336-393 (733)
88 PF07652 Flavi_DEAD: Flaviviru 97.1 6E-05 1.3E-09 65.9 -2.2 44 221-265 93-136 (148)
89 COG1197 Mfd Transcription-repa 97.0 0.0035 7.6E-08 71.6 10.7 63 470-539 815-877 (1139)
90 PRK09200 preprotein translocas 97.0 0.0044 9.4E-08 69.6 11.3 61 492-554 453-521 (790)
91 cd00079 HELICc Helicase superf 97.0 0.0028 6E-08 54.9 7.6 53 492-544 53-105 (131)
92 COG1200 RecG RecG-like helicas 96.9 0.0053 1.2E-07 66.4 10.4 51 490-540 506-556 (677)
93 COG1202 Superfamily II helicas 96.8 0.0069 1.5E-07 63.8 10.1 68 221-292 336-409 (830)
94 TIGR00603 rad25 DNA repair hel 96.8 0.0074 1.6E-07 67.2 10.9 46 496-541 520-566 (732)
95 KOG0348|consensus 96.8 0.00099 2.1E-08 69.3 3.3 52 490-541 470-521 (708)
96 COG0514 RecQ Superfamily II DN 96.7 0.017 3.6E-07 62.6 12.3 60 491-550 254-313 (590)
97 TIGR03714 secA2 accessory Sec 96.7 0.013 2.9E-07 65.3 11.6 56 492-549 449-513 (762)
98 COG1205 Distinct helicase fami 96.4 0.014 2.9E-07 67.0 9.5 61 492-552 339-399 (851)
99 KOG0341|consensus 96.3 0.0079 1.7E-07 60.3 6.4 53 492-544 446-498 (610)
100 PRK12906 secA preprotein trans 96.3 0.021 4.6E-07 63.9 10.3 56 492-549 465-528 (796)
101 COG1204 Superfamily II helicas 96.3 0.075 1.6E-06 60.2 14.6 108 221-333 144-268 (766)
102 TIGR00963 secA preprotein tran 96.0 0.039 8.6E-07 61.3 10.5 60 492-553 430-496 (745)
103 TIGR02562 cas3_yersinia CRISPR 95.5 0.28 6E-06 56.4 14.5 43 224-269 594-638 (1110)
104 PRK13104 secA preprotein trans 95.5 0.081 1.7E-06 60.0 10.3 106 222-331 324-457 (896)
105 PRK13107 preprotein translocas 94.5 0.27 5.8E-06 55.8 10.9 106 222-331 329-462 (908)
106 KOG0346|consensus 94.3 0.14 2.9E-06 52.7 7.3 104 221-334 168-284 (569)
107 PRK11448 hsdR type I restricti 94.2 0.71 1.5E-05 54.8 14.1 48 493-542 733-781 (1123)
108 KOG0334|consensus 94.2 0.22 4.8E-06 56.5 9.4 50 492-541 638-687 (997)
109 PF00270 DEAD: DEAD/DEAH box h 94.1 0.021 4.5E-07 51.9 1.1 44 221-266 117-163 (169)
110 PRK12900 secA preprotein trans 93.9 0.2 4.3E-06 57.2 8.6 56 492-549 623-686 (1025)
111 TIGR00631 uvrb excinuclease AB 93.7 0.082 1.8E-06 59.0 5.0 52 492-543 467-518 (655)
112 PRK12904 preprotein translocas 93.6 0.39 8.4E-06 54.4 10.1 106 222-331 310-443 (830)
113 KOG0337|consensus 93.2 0.9 1.9E-05 46.7 10.9 45 497-541 291-335 (529)
114 PRK05298 excinuclease ABC subu 92.2 0.18 4E-06 56.5 5.1 54 491-544 470-523 (652)
115 cd00046 DEXDc DEAD-like helica 91.9 0.11 2.4E-06 44.8 2.4 44 221-265 101-144 (144)
116 KOG0951|consensus 91.8 1.3 2.7E-05 51.6 10.9 109 220-333 434-561 (1674)
117 KOG4284|consensus 91.3 1.2 2.5E-05 48.3 9.4 51 492-542 297-347 (980)
118 smart00487 DEXDc DEAD-like hel 91.1 0.21 4.5E-06 46.0 3.5 52 221-275 127-183 (201)
119 COG4581 Superfamily II RNA hel 90.9 0.26 5.6E-06 56.8 4.6 73 221-296 227-307 (1041)
120 TIGR01407 dinG_rel DnaQ family 90.4 3.6 7.9E-05 47.9 13.5 32 504-538 715-746 (850)
121 PRK04914 ATP-dependent helicas 89.8 0.95 2.1E-05 52.6 7.9 53 491-543 518-572 (956)
122 cd00268 DEADc DEAD-box helicas 89.4 0.49 1.1E-05 44.4 4.5 53 221-275 141-197 (203)
123 KOG0354|consensus 88.5 0.29 6.3E-06 54.2 2.5 43 499-541 456-498 (746)
124 COG1061 SSL2 DNA or RNA helica 87.4 6.1 0.00013 42.2 11.8 48 494-541 309-356 (442)
125 KOG0947|consensus 86.1 0.66 1.4E-05 52.3 3.5 67 221-293 401-478 (1248)
126 TIGR00604 rad3 DNA repair heli 85.4 2.6 5.7E-05 47.9 8.1 87 247-336 435-540 (705)
127 KOG0349|consensus 85.1 0.96 2.1E-05 46.5 3.8 61 490-550 531-591 (725)
128 KOG0344|consensus 84.9 4 8.7E-05 43.8 8.4 50 492-541 413-462 (593)
129 KOG0327|consensus 83.3 9.8 0.00021 38.9 10.0 54 491-544 287-340 (397)
130 KOG0352|consensus 80.3 4.5 9.8E-05 41.8 6.5 50 492-541 280-329 (641)
131 KOG0351|consensus 79.0 8.6 0.00019 44.7 9.1 62 493-554 511-572 (941)
132 KOG0353|consensus 78.4 2.5 5.4E-05 42.7 3.9 63 492-554 342-404 (695)
133 KOG0952|consensus 78.0 18 0.00039 41.8 10.8 113 221-335 236-366 (1230)
134 KOG0948|consensus 75.9 1.7 3.7E-05 47.9 2.2 66 221-292 233-309 (1041)
135 PF02399 Herpes_ori_bp: Origin 75.9 2 4.4E-05 48.2 2.8 53 221-275 140-202 (824)
136 PF04851 ResIII: Type III rest 75.2 1.8 3.8E-05 39.5 1.9 39 221-265 144-182 (184)
137 KOG0950|consensus 73.3 29 0.00063 39.8 10.8 46 496-541 527-572 (1008)
138 PRK12326 preprotein translocas 71.3 45 0.00097 37.7 11.6 106 222-331 307-440 (764)
139 PRK11747 dinG ATP-dependent DN 66.7 43 0.00094 38.0 10.9 79 256-338 457-554 (697)
140 PRK12903 secA preprotein trans 64.6 60 0.0013 37.4 11.1 105 222-330 306-438 (925)
141 PRK08074 bifunctional ATP-depe 62.9 90 0.0019 36.9 12.8 76 256-333 673-767 (928)
142 COG1199 DinG Rad3-related DNA 62.6 15 0.00032 41.5 6.2 83 256-339 404-500 (654)
143 PRK13103 secA preprotein trans 62.3 33 0.0007 39.6 8.6 104 222-329 329-460 (913)
144 PRK12899 secA preprotein trans 53.5 90 0.0019 36.4 10.2 103 222-328 448-578 (970)
145 PRK07246 bifunctional ATP-depe 50.6 40 0.00087 39.1 7.1 77 256-335 574-664 (820)
146 PRK12902 secA preprotein trans 47.1 1.5E+02 0.0032 34.5 10.5 104 222-329 319-450 (939)
147 KOG0347|consensus 46.8 23 0.00051 38.1 4.0 33 489-525 289-321 (731)
148 PRK14873 primosome assembly pr 46.6 17 0.00037 40.8 3.3 33 493-525 216-248 (665)
149 PF05729 NACHT: NACHT domain 45.7 39 0.00086 29.7 5.1 59 227-285 85-150 (166)
150 PLN03142 Probable chromatin-re 40.4 51 0.0011 39.0 5.9 66 472-542 497-565 (1033)
151 PRK05580 primosome assembly pr 37.0 30 0.00065 39.2 3.3 48 492-540 216-263 (679)
152 CHL00122 secA preprotein trans 35.1 3E+02 0.0066 31.9 10.7 104 222-329 304-435 (870)
153 PF13872 AAA_34: P-loop contai 34.0 33 0.00071 34.4 2.6 41 224-265 173-220 (303)
154 PF00176 SNF2_N: SNF2 family N 33.1 16 0.00034 36.2 0.3 48 223-274 134-181 (299)
155 PRK12901 secA preprotein trans 30.1 2.4E+02 0.0052 33.4 8.9 103 222-328 508-638 (1112)
156 COG1198 PriA Primosomal protei 28.8 1.2E+02 0.0027 34.4 6.4 54 221-274 311-368 (730)
157 TIGR03117 cas_csf4 CRISPR-asso 28.6 5.7E+02 0.012 28.8 11.4 52 300-352 453-504 (636)
158 PRK06526 transposase; Provisio 26.5 53 0.0011 32.2 2.7 70 221-291 157-240 (254)
159 PF13401 AAA_22: AAA domain; P 25.8 40 0.00086 28.6 1.5 37 225-264 89-125 (131)
160 KOG1000|consensus 24.9 9.2E+02 0.02 26.2 12.4 61 474-540 504-567 (689)
161 PRK11634 ATP-dependent RNA hel 23.3 1.1E+02 0.0024 34.3 4.8 46 491-540 103-154 (629)
162 PF13173 AAA_14: AAA domain 22.9 79 0.0017 27.0 2.9 48 223-274 61-110 (128)
163 PF14202 TnpW: Transposon-enco 22.5 81 0.0018 20.8 2.1 20 279-298 4-23 (37)
164 KOG0339|consensus 22.4 1.2E+02 0.0026 32.7 4.3 63 474-541 308-377 (731)
165 PRK11776 ATP-dependent RNA hel 22.1 1E+02 0.0022 33.0 4.1 46 491-540 101-152 (460)
166 PRK14873 primosome assembly pr 21.2 74 0.0016 35.9 2.9 52 221-272 255-310 (665)
167 COG0556 UvrB Helicase subunit 21.2 1.4E+02 0.0031 32.3 4.7 63 473-540 457-519 (663)
168 PF05265 DUF723: Protein of un 21.1 85 0.0018 23.2 2.2 35 261-295 1-37 (60)
No 1
>KOG0922|consensus
Probab=100.00 E-value=6.3e-76 Score=605.88 Aligned_cols=286 Identities=48% Similarity=0.692 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeeeCCeE
Q psy12726 103 TLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLVDSQV 164 (558)
Q Consensus 103 ~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~~~~v 164 (558)
.-+||++.|+||+..++++++.++ ||||+||+||+|+.+||. |++| ++|++.++++..|+.|
T Consensus 48 ~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 48 ESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred ccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 347999999999999999999877 999999999999999997 4444 6788999999999999
Q ss_pred EEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCchh
Q psy12726 165 VYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPPG 244 (558)
Q Consensus 165 ~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll~ 244 (558)
||..|++.. +++.+.|. |+|+|.++|+ ...||. |++|++||+||+|||+++||+|||
T Consensus 128 GY~IRFed~--ts~~Trik---ymTDG~LLRE-~l~Dp~-----------------LskYsvIIlDEAHERsl~TDiLlG 184 (674)
T KOG0922|consen 128 GYTIRFEDS--TSKDTRIK---YMTDGMLLRE-ILKDPL-----------------LSKYSVIILDEAHERSLHTDILLG 184 (674)
T ss_pred eeEEEeccc--CCCceeEE---EecchHHHHH-HhcCCc-----------------cccccEEEEechhhhhhHHHHHHH
Confidence 999999999 88899999 9999999999 778999 999999999999999999999999
Q ss_pred hhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEE
Q psy12726 245 LLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVLLF 324 (558)
Q Consensus 245 ~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvf 324 (558)
+||+++++|++|||||||||||+++|++||++||++.||||+|||+++|++.+..||+++++.++++||..+++||||||
T Consensus 185 lLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvF 264 (674)
T KOG0922|consen 185 LLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVF 264 (674)
T ss_pred HHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhh
Q psy12726 325 LTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIY 404 (558)
Q Consensus 325 l~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (558)
|||++||+..+
T Consensus 265 LtGqeEIe~~~--------------------------------------------------------------------- 275 (674)
T KOG0922|consen 265 LTGQEEIEAAC--------------------------------------------------------------------- 275 (674)
T ss_pred eCCHHHHHHHH---------------------------------------------------------------------
Confidence 99999886543
Q ss_pred hhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhc
Q psy12726 405 HELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKS 484 (558)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~ 484 (558)
+.|.+..+.
T Consensus 276 -----------------------------------------------------------------------~~l~e~~~~ 284 (674)
T KOG0922|consen 276 -----------------------------------------------------------------------ELLRERAKS 284 (674)
T ss_pred -----------------------------------------------------------------------HHHHHHhhh
Confidence 333333333
Q ss_pred CCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 485 LGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 485 ~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
...+.+. .++||||+||+++|.+||.++|+|.|||||||||||||||||||+||||+|.. |+..|++
T Consensus 285 ~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~v--K~~~y~p 351 (674)
T KOG0922|consen 285 LPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFV--KQKKYNP 351 (674)
T ss_pred ccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCce--EEEeecc
Confidence 3333344 89999999999999999999999999999999999999999999999999955 5555554
No 2
>KOG0923|consensus
Probab=100.00 E-value=1.1e-71 Score=567.32 Aligned_cols=291 Identities=42% Similarity=0.652 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc-----------ceeE----eeCCCCCceeeeC
Q psy12726 101 IRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF-----------RNAA----KKDPQEGYRTLVD 161 (558)
Q Consensus 101 ~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~-----------~~~A----~~r~~~~~~~~~~ 161 (558)
.+..+||+..|.+|+..++.+++.++ ||||+||+||+|..+||. |++| +.|++.+++.-.|
T Consensus 260 ~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 260 VRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 46678999999999999999999887 999999999999999997 4444 5678889999999
Q ss_pred CeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCC
Q psy12726 162 SQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISF 241 (558)
Q Consensus 162 ~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ 241 (558)
+.+||-.++..+ .+.++++. |+|+|+++|+ ...+|+ |..|++||+||+|||+++||+
T Consensus 340 ~eVGYsIRFEdc--TSekTvlK---YMTDGmLlRE-fL~epd-----------------LasYSViiiDEAHERTL~TDI 396 (902)
T KOG0923|consen 340 HEVGYSIRFEDC--TSEKTVLK---YMTDGMLLRE-FLSEPD-----------------LASYSVIIVDEAHERTLHTDI 396 (902)
T ss_pred cccceEEEeccc--cCcceeee---eecchhHHHH-Hhcccc-----------------ccceeEEEeehhhhhhhhhhH
Confidence 999999999999 88999999 9999999999 777888 999999999999999999999
Q ss_pred chhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCE
Q psy12726 242 PPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDV 321 (558)
Q Consensus 242 ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~i 321 (558)
|+|++|++.+-||||||+|||||||++.|+.||++|||+.||||.|||.+||-+.|+.||+++++.+++|||...|.|||
T Consensus 397 LfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 397 LFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred HHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcc
Q psy12726 322 LLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEW 401 (558)
Q Consensus 322 Lvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (558)
|||++|++||+...
T Consensus 477 LVFltGQeEIEt~~------------------------------------------------------------------ 490 (902)
T KOG0923|consen 477 LVFLTGQEEIETVK------------------------------------------------------------------ 490 (902)
T ss_pred EEEeccHHHHHHHH------------------------------------------------------------------
Confidence 99999999885422
Q ss_pred hhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHh
Q psy12726 402 VIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYER 481 (558)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~ 481 (558)
+.|.+.
T Consensus 491 --------------------------------------------------------------------------e~l~~~ 496 (902)
T KOG0923|consen 491 --------------------------------------------------------------------------ENLKER 496 (902)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 233333
Q ss_pred hhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccccc
Q psy12726 482 MKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHRCA 556 (558)
Q Consensus 482 ~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~~~ 556 (558)
.+.++.....+.|+|+|++||.+.|.+||+|.|+|.|||||||||||||||||||+||||+| .+|+..|++.+
T Consensus 497 ~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpG--f~K~nsynprt 569 (902)
T KOG0923|consen 497 CRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPG--FVKQNSYNPRT 569 (902)
T ss_pred HHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCc--cccccCcCCCc
Confidence 44455555679999999999999999999999999999999999999999999999999999 66888888764
No 3
>KOG0924|consensus
Probab=100.00 E-value=5.1e-68 Score=541.11 Aligned_cols=290 Identities=38% Similarity=0.553 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeeeCC
Q psy12726 101 IRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLVDS 162 (558)
Q Consensus 101 ~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~~~ 162 (558)
.+..+||+..|.||++.++.|+++++ |+||+||++|+|+..||. |++| ++|++.+++...|.
T Consensus 351 qrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 351 QRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 45568999999999999999999877 899999999999999997 5555 67888899999999
Q ss_pred eEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCc
Q psy12726 163 QVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFP 242 (558)
Q Consensus 163 ~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~l 242 (558)
.|||-++++.. +++.++|. |+|+|++||+ +..|.. |.+|++||+||+|||++++|+|
T Consensus 431 ~VGYsIRFEdv--T~~~T~Ik---ymTDGiLLrE-sL~d~~-----------------L~kYSviImDEAHERslNtDil 487 (1042)
T KOG0924|consen 431 TVGYSIRFEDV--TSEDTKIK---YMTDGILLRE-SLKDRD-----------------LDKYSVIIMDEAHERSLNTDIL 487 (1042)
T ss_pred ccceEEEeeec--CCCceeEE---EeccchHHHH-Hhhhhh-----------------hhheeEEEechhhhcccchHHH
Confidence 99999999999 88999999 9999999999 666766 9999999999999999999999
Q ss_pred hhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEE
Q psy12726 243 PGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVL 322 (558)
Q Consensus 243 l~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iL 322 (558)
+|+||.++.+|.|||||+||||||+++|+.|||+||.+.||||+|||++.|.+.+..||++++++.+++||...++||||
T Consensus 488 fGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 488 FGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred HHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcch
Q psy12726 323 LFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWV 402 (558)
Q Consensus 323 vfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (558)
+|+||+++|+-.+.-+
T Consensus 568 IfmtGqediE~t~~~i---------------------------------------------------------------- 583 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDII---------------------------------------------------------------- 583 (1042)
T ss_pred EecCCCcchhHHHHHH----------------------------------------------------------------
Confidence 9999999885432110
Q ss_pred hhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhh
Q psy12726 403 IYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERM 482 (558)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~ 482 (558)
.+.+ ..+..
T Consensus 584 ---------~~~l------------------------------------------------------------~ql~~-- 592 (1042)
T KOG0924|consen 584 ---------KEKL------------------------------------------------------------EQLDS-- 592 (1042)
T ss_pred ---------HHHH------------------------------------------------------------Hhhhc--
Confidence 0000 11111
Q ss_pred hcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcc
Q psy12726 483 KSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKY 552 (558)
Q Consensus 483 ~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~ 552 (558)
. ....+.|||+||+||.+-|.++|+++|+|+|||||||||||||||||||.||||||.+|.|.|.+
T Consensus 593 ---~-~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 593 ---A-PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred ---C-CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 1 11359999999999999999999999999999999999999999999999999999887777765
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-66 Score=564.64 Aligned_cols=284 Identities=38% Similarity=0.526 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeeeCC
Q psy12726 101 IRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLVDS 162 (558)
Q Consensus 101 ~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~~~ 162 (558)
.+..+||.+.+.+|++.+++++++++ ||||+||+|++|+..||. |++| +.|++.+.++..|+
T Consensus 45 ~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 45 YRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred ccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 44558999999999999999999887 999999999999999984 4444 56778889989999
Q ss_pred eEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCc
Q psy12726 163 QVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFP 242 (558)
Q Consensus 163 ~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~l 242 (558)
.|||..++++. .++++.|. ++|+|+++|+ +..|+. |++|++|||||+|||++++|++
T Consensus 125 ~VGY~iRfe~~--~s~~Trik---~mTdGiLlre-i~~D~~-----------------Ls~ys~vIiDEaHERSl~tDil 181 (845)
T COG1643 125 TVGYSIRFESK--VSPRTRIK---VMTDGILLRE-IQNDPL-----------------LSGYSVVIIDEAHERSLNTDIL 181 (845)
T ss_pred eeeEEEEeecc--CCCCceeE---EeccHHHHHH-HhhCcc-----------------cccCCEEEEcchhhhhHHHHHH
Confidence 99999999999 88999999 9999999999 888999 9999999999999999999999
Q ss_pred hhhhHHHhhcCC-CeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcch-HHHHHHHHHHHHhcCCCCC
Q psy12726 243 PGLLKQAVKKRP-EIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDY-LDASLITVMQIHLREPPGD 320 (558)
Q Consensus 243 l~~lk~~l~~r~-~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~-~~~~~~~~~~i~~~~~~g~ 320 (558)
||+||+++.+|+ |||||+||||+|+++|++||++||+|+|+||+|||+++|.+.+..|| +++++.+++++|..+++||
T Consensus 182 Lgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 182 LGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred HHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCC
Confidence 999999888665 89999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCc
Q psy12726 321 VLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPE 400 (558)
Q Consensus 321 iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (558)
|||||||++||++....
T Consensus 262 ILvFLpG~~EI~~~~~~--------------------------------------------------------------- 278 (845)
T COG1643 262 ILVFLPGQREIERTAEW--------------------------------------------------------------- 278 (845)
T ss_pred EEEECCcHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999765321
Q ss_pred chhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHH
Q psy12726 401 WVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYE 480 (558)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~ 480 (558)
|.+
T Consensus 279 -----------------------------------------------------------------------------L~~ 281 (845)
T COG1643 279 -----------------------------------------------------------------------------LEK 281 (845)
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 111
Q ss_pred hhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcc
Q psy12726 481 RMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKY 552 (558)
Q Consensus 481 ~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~ 552 (558)
+.++ +.+.|+||||.|+.++|.+||++.|.|+|||||||||||||||||||+||||||..|++.|++
T Consensus 282 --~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 282 --AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred --cccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 0111 348899999999999999999999999999999999999999999999999999886666654
No 5
>KOG0926|consensus
Probab=100.00 E-value=2e-65 Score=529.88 Aligned_cols=371 Identities=26% Similarity=0.321 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc---------------ceeE----eeCCCCCcee
Q psy12726 102 RTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF---------------RNAA----KKDPQEGYRT 158 (558)
Q Consensus 102 ~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~---------------~~~A----~~r~~~~~~~ 158 (558)
+.-+||...-++|++.++.|.++++ ||||+||+||+|+.+||. |++| ++|++.+.+.
T Consensus 252 R~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~ 331 (1172)
T KOG0926|consen 252 RLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV 331 (1172)
T ss_pred HhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc
Confidence 3346788888999999999999888 899999999999999997 4444 6777777775
Q ss_pred eeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceeccccccccc
Q psy12726 159 LVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNR 238 (558)
Q Consensus 159 ~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~ 238 (558)
.|..|+|+++++.. .++.+-|. |||+|++||+ +..|-. |.+|++||+||+|||+++
T Consensus 332 -~~~eVsYqIRfd~t--i~e~T~Ik---FMTDGVLLrE-i~~Dfl-----------------L~kYSvIIlDEAHERSvn 387 (1172)
T KOG0926|consen 332 -LGSEVSYQIRFDGT--IGEDTSIK---FMTDGVLLRE-IENDFL-----------------LTKYSVIILDEAHERSVN 387 (1172)
T ss_pred -CccceeEEEEeccc--cCCCceeE---EecchHHHHH-HHHhHh-----------------hhhceeEEechhhhccch
Confidence 78899999999998 78889898 9999999999 665655 999999999999999999
Q ss_pred CCCchhhhHHHhhcC----------CCeeEEEEecccchHHHhh---hcC-CCCEEEecCCCCcceeeccCCCCcchHHH
Q psy12726 239 ISFPPGLLKQAVKKR----------PEIKLIVTSATLDAVKFSS---YFF-EAPIFTIPGRTFPVEVLYTKEPETDYLDA 304 (558)
Q Consensus 239 ~D~ll~~lk~~l~~r----------~~lKlIlMSATl~~~~F~~---yF~-~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~ 304 (558)
||+|+|+|.++++.| ..||||||||||+.++|++ .|. .+|+|+|+.|+|||.+||.+.++.||+.+
T Consensus 388 TDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~e 467 (1172)
T KOG0926|consen 388 TDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAE 467 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHH
Confidence 999999999999866 3799999999999999996 676 57899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhccc-----ceecCCCchHHHHHH-hhhhhhhcccccCCCCCcc
Q psy12726 305 SLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKL-----DVVSAGKNTVRVQKA-VCSGFFRNAAKKDPQEGYR 378 (558)
Q Consensus 305 ~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 378 (558)
|+++++.||...|+|.||||+||++|+...+..+-.+-.. ++...++........ ...+-+....+.+....|.
T Consensus 468 AfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~ 547 (1172)
T KOG0926|consen 468 AFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYE 547 (1172)
T ss_pred HHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhccccc
Confidence 9999999999999999999999999998887655444210 000000000000000 0000000000000000000
Q ss_pred ccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhcccccccccc
Q psy12726 379 TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKY 458 (558)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (558)
+. ..++.++..+-. .. ..+..+..
T Consensus 548 ~~--------------------ed~d~~~~~~~~----------~~--------------------------~raa~~~~ 571 (1172)
T KOG0926|consen 548 SD--------------------EDIDQELVDSGF----------AS--------------------------LRAAFNAL 571 (1172)
T ss_pred ch--------------------hhhhhhhhcccc----------hh--------------------------hhhhhhcc
Confidence 00 001111110000 00 00000111
Q ss_pred CCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEE
Q psy12726 459 EEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFY 538 (558)
Q Consensus 459 ~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~ 538 (558)
.+.+++-.++.|-+...+-+.+......-....+.||||||.|++++|.+||+.+|+|.|.|||||||||||||||+|+|
T Consensus 572 ~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkY 651 (1172)
T KOG0926|consen 572 ADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKY 651 (1172)
T ss_pred ccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeE
Confidence 11122222222222222333333333233345799999999999999999999999999999999999999999999999
Q ss_pred EEcCChhhHHhhcc
Q psy12726 539 VVDPFDIEVRQAKY 552 (558)
Q Consensus 539 VID~g~~~~~~~~~ 552 (558)
|||||++|+|.|+-
T Consensus 652 VVD~Gr~K~R~Yd~ 665 (1172)
T KOG0926|consen 652 VVDCGRVKERLYDS 665 (1172)
T ss_pred EEeccchhhhcccc
Confidence 99999998887763
No 6
>KOG0925|consensus
Probab=100.00 E-value=3.5e-62 Score=482.79 Aligned_cols=282 Identities=38% Similarity=0.567 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeeeCCe
Q psy12726 102 RTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLVDSQ 163 (558)
Q Consensus 102 ~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~~~~ 163 (558)
+.-+|+.+.+.++++.+.+|++.+. ||||+||+||+++..... +++| +.|++.++....|..
T Consensus 43 R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~E 122 (699)
T KOG0925|consen 43 RRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEE 122 (699)
T ss_pred HhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchh
Confidence 3447899999999999999988766 899999999999875443 4444 678899999999999
Q ss_pred EEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCch
Q psy12726 164 VVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPP 243 (558)
Q Consensus 164 v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll 243 (558)
|||..|++.+ .++++++. |+|+|.++|+ ...+|. +..|+++|+||+|||++-||+|+
T Consensus 123 VGysIrfEdC--~~~~T~Lk---y~tDgmLlrE-ams~p~-----------------l~~y~viiLDeahERtlATDiLm 179 (699)
T KOG0925|consen 123 VGYSIRFEDC--TSPNTLLK---YCTDGMLLRE-AMSDPL-----------------LGRYGVIILDEAHERTLATDILM 179 (699)
T ss_pred cccccccccc--CChhHHHH---HhcchHHHHH-HhhCcc-----------------cccccEEEechhhhhhHHHHHHH
Confidence 9999999999 88999998 9999999999 556887 99999999999999999999999
Q ss_pred hhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEE
Q psy12726 244 GLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVLL 323 (558)
Q Consensus 244 ~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLv 323 (558)
|+||+++..|||||||+||||+++++|..||++||+++||| +|||++||.++++.||+++++.++++||..+.+|||||
T Consensus 180 Gllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilv 258 (699)
T KOG0925|consen 180 GLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILV 258 (699)
T ss_pred HHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEE
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchh
Q psy12726 324 FLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVI 403 (558)
Q Consensus 324 fl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (558)
||||.+||++.+.
T Consensus 259 FLtgeeeIe~aC~------------------------------------------------------------------- 271 (699)
T KOG0925|consen 259 FLTGEEEIEDACR------------------------------------------------------------------- 271 (699)
T ss_pred EecCHHHHHHHHH-------------------------------------------------------------------
Confidence 9999998876553
Q ss_pred hhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhh
Q psy12726 404 YHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMK 483 (558)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~ 483 (558)
.+..+..
T Consensus 272 -------------------------------------------------------------------------~i~re~~ 278 (699)
T KOG0925|consen 272 -------------------------------------------------------------------------KISREVD 278 (699)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 2222233
Q ss_pred cCCCCCCceEEEeccCCCChHHHHhhcccCCCC-----CeEEEEeeccccceeeeCCeEEEEcCChhhHHhhc
Q psy12726 484 SLGPDVPELIILPVYSALPSEMQTRIFEAAPPG-----SRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAK 551 (558)
Q Consensus 484 ~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g-----~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~ 551 (558)
+++++.+.++|+||| +++|+++|+++|.. -|||||||||||||+|||+|+||||.|.+|+|.|+
T Consensus 279 ~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYN 347 (699)
T KOG0925|consen 279 NLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYN 347 (699)
T ss_pred hhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccC
Confidence 344555679999999 88999999998843 48999999999999999999999999988666554
No 7
>KOG0920|consensus
Probab=100.00 E-value=6.1e-62 Score=528.24 Aligned_cols=327 Identities=29% Similarity=0.388 Sum_probs=262.8
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcC-----Cc-------ceeE----eeCCC
Q psy12726 94 CYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSG-----FF-------RNAA----KKDPQ 153 (558)
Q Consensus 94 c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g-----~~-------~~~A----~~r~~ 153 (558)
+.+..+..+.-+|++..|+++++.+++++++++ ||||+||+||++|+.. .. |+++ +.|++
T Consensus 161 ~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa 240 (924)
T KOG0920|consen 161 SYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVA 240 (924)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHH
Confidence 345556667778999999999999999999888 8999999999999864 32 3333 66788
Q ss_pred CCceeeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccc
Q psy12726 154 EGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPL 233 (558)
Q Consensus 154 ~~~~~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~h 233 (558)
.++....|..+||..+.+.. .+.++.+. |+|+|+++|.+. .++. +..++|+++||+|
T Consensus 241 ~ER~~~~g~~VGYqvrl~~~--~s~~t~L~---fcTtGvLLr~L~-~~~~-----------------l~~vthiivDEVH 297 (924)
T KOG0920|consen 241 KERGESLGEEVGYQVRLESK--RSRETRLL---FCTTGVLLRRLQ-SDPT-----------------LSGVTHIIVDEVH 297 (924)
T ss_pred HHhccccCCeeeEEEeeecc--cCCceeEE---EecHHHHHHHhc-cCcc-----------------cccCceeeeeeEE
Confidence 88888999999999999988 66668887 999999999944 4877 9999999999999
Q ss_pred cccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHH
Q psy12726 234 QRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIH 313 (558)
Q Consensus 234 er~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~ 313 (558)
||++++||||.++|.++.+||+|||||||||+|++.|+.||++||+|+||||+|||++||+| |.+.. .....
T Consensus 298 ER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLE----Dil~~----~~~~~ 369 (924)
T KOG0920|consen 298 ERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLE----DILSK----TGYVS 369 (924)
T ss_pred EccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHH----HHHHH----hcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988 32222 10000
Q ss_pred hcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcc
Q psy12726 314 LREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSA 393 (558)
Q Consensus 314 ~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (558)
....+. .|.+ .+ +.++..
T Consensus 370 ~~~~~~------~~~~---------------------------------------------~~----------~~~~~~- 387 (924)
T KOG0920|consen 370 EDDSAR------SGPE---------------------------------------------RS----------QLRLAR- 387 (924)
T ss_pred cccccc------cccc---------------------------------------------cC----------cccccc-
Confidence 000000 0000 00 000000
Q ss_pred cccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhh
Q psy12726 394 LFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDT 473 (558)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 473 (558)
-...+..+++++++++.+|+.+- ..+|.||+||||+ +||..
T Consensus 388 --~~~~~~~id~~Li~~li~~I~~~--~~~GaILVFLPG~-----------------------------------~eI~~ 428 (924)
T KOG0920|consen 388 --LKLWEPEIDYDLIEDLIEYIDER--EFEGAILVFLPGW-----------------------------------EEILQ 428 (924)
T ss_pred --chhccccccHHHHHHHHHhcccC--CCCceEEEEcCCH-----------------------------------HHHHH
Confidence 11123338999999999999654 6689999999998 68888
Q ss_pred HHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 474 ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
+.+.|..+...... .++.|+||||+|++.||++||+.||+|+||||+||||||||||||||+||||||+.|.+-|+.+
T Consensus 429 ~~~~L~~~~~f~~~--~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~ 506 (924)
T KOG0920|consen 429 LKELLEVNLPFADS--LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPE 506 (924)
T ss_pred HHHHhhhccccccc--cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeeccc
Confidence 88888765433222 6799999999999999999999999999999999999999999999999999997755555544
Q ss_pred c
Q psy12726 554 R 554 (558)
Q Consensus 554 ~ 554 (558)
+
T Consensus 507 ~ 507 (924)
T KOG0920|consen 507 R 507 (924)
T ss_pred C
Confidence 3
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.6e-49 Score=447.03 Aligned_cols=282 Identities=32% Similarity=0.467 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeeeC
Q psy12726 100 QIRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLVD 161 (558)
Q Consensus 100 ~~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~~ 161 (558)
.+..-+||.+.+.+|++.+..++++++ ||||+|++|++++..|+. |++| +.|++.+++...|
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 344458999999999999999998777 999999999999987753 2333 4566777888889
Q ss_pred CeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCC
Q psy12726 162 SQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISF 241 (558)
Q Consensus 162 ~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ 241 (558)
+.+||.++++.. .++++.|. ++|+|.+++. +..++. |..+++||+||+|||++++|+
T Consensus 141 ~~VGY~vR~~~~--~s~~T~I~---~~TdGiLLr~-l~~d~~-----------------L~~~~~IIIDEaHERsL~~D~ 197 (1283)
T TIGR01967 141 EKVGYKVRFHDQ--VSSNTLVK---LMTDGILLAE-TQQDRF-----------------LSRYDTIIIDEAHERSLNIDF 197 (1283)
T ss_pred eEEeeEEcCCcc--cCCCceee---eccccHHHHH-hhhCcc-----------------cccCcEEEEcCcchhhccchh
Confidence 999999999887 56677777 8999999988 555666 999999999999999999999
Q ss_pred chhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCC------cchHHHHHHHHHHHHhc
Q psy12726 242 PPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPE------TDYLDASLITVMQIHLR 315 (558)
Q Consensus 242 ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~------~d~~~~~~~~~~~i~~~ 315 (558)
++++||+++.+||++|+|+||||+|.+.|++||+++|+|.|+|++|||+++|.+... .++.+.....+..++.
T Consensus 198 LL~lLk~il~~rpdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~- 276 (1283)
T TIGR01967 198 LLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA- 276 (1283)
T ss_pred HHHHHHHHHhhCCCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999976432 3566666666666554
Q ss_pred CCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccc
Q psy12726 316 EPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALF 395 (558)
Q Consensus 316 ~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (558)
..+|+||||+||..||+....
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~----------------------------------------------------------- 297 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAE----------------------------------------------------------- 297 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHH-----------------------------------------------------------
Confidence 467999999999999865321
Q ss_pred cCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHH
Q psy12726 396 NRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTAC 475 (558)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 475 (558)
T Consensus 298 -------------------------------------------------------------------------------- 297 (1283)
T TIGR01967 298 -------------------------------------------------------------------------------- 297 (1283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 476 EILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
.|... ..+.+.|+||||.|+.++|.++|++. +.|||||||||||||||||||+||||+|+.|.+.|++.
T Consensus 298 -~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 298 -ILRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred -HHHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 11110 01237899999999999999999864 45899999999999999999999999998766665543
No 9
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.8e-48 Score=436.22 Aligned_cols=283 Identities=31% Similarity=0.456 Sum_probs=234.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----------ceeE----eeCCCCCceeee
Q psy12726 99 VQIRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----------RNAA----KKDPQEGYRTLV 160 (558)
Q Consensus 99 L~~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----------~~~A----~~r~~~~~~~~~ 160 (558)
+.++.-+||.+.+.+|+..+.+++++++ ||||+||+|+.++..|.. +++| +.|++.++.+..
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3445558999999999999999998777 999999999999986643 3333 456666777778
Q ss_pred CCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCC
Q psy12726 161 DSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRIS 240 (558)
Q Consensus 161 ~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D 240 (558)
|+.+||..+++.. .++.+.|. ++|.|.+++. ...++. |..++++|+||+|||++++|
T Consensus 147 G~~VGY~vrf~~~--~s~~t~I~---v~TpG~LL~~-l~~d~~-----------------Ls~~~~IIIDEAHERsLn~D 203 (1294)
T PRK11131 147 GGCVGYKVRFNDQ--VSDNTMVK---LMTDGILLAE-IQQDRL-----------------LMQYDTIIIDEAHERSLNID 203 (1294)
T ss_pred cceeceeecCccc--cCCCCCEE---EEChHHHHHH-HhcCCc-----------------cccCcEEEecCccccccccc
Confidence 8999999998876 44556666 7999999988 344555 89999999999999999999
Q ss_pred CchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCC------cchHHHHHHHHHHHHh
Q psy12726 241 FPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPE------TDYLDASLITVMQIHL 314 (558)
Q Consensus 241 ~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~------~d~~~~~~~~~~~i~~ 314 (558)
|++++||+++.+||++|+|+||||++.+.|++||+++|+|.|+|++|||+++|.+... .|++.+....+..++
T Consensus 204 fLLg~Lk~lL~~rpdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~- 282 (1294)
T PRK11131 204 FILGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG- 282 (1294)
T ss_pred hHHHHHHHhhhcCCCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999987543 356777666666655
Q ss_pred cCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCccc
Q psy12726 315 REPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSAL 394 (558)
Q Consensus 315 ~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (558)
.+++|+||||+||.+||+....
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae---------------------------------------------------------- 304 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTAD---------------------------------------------------------- 304 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHH----------------------------------------------------------
Confidence 4578999999999999865421
Q ss_pred ccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhH
Q psy12726 395 FNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTA 474 (558)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~ 474 (558)
T Consensus 305 -------------------------------------------------------------------------------- 304 (1294)
T PRK11131 305 -------------------------------------------------------------------------------- 304 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 475 CEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
.|... +.+.+.|+||||.|++++|.++|++ .|.|||||||||||||||||||+||||+|+.|.+.|++.
T Consensus 305 --~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 305 --ALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred --HHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 11110 0123679999999999999999996 478999999999999999999999999998877776654
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.7e-46 Score=410.63 Aligned_cols=279 Identities=29% Similarity=0.345 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc---------ceeE----eeCCCCCceeeeCCeEEEEe
Q psy12726 106 RAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF---------RNAA----KKDPQEGYRTLVDSQVVYIH 168 (558)
Q Consensus 106 ~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~---------~~~A----~~r~~~~~~~~~~~~v~~ih 168 (558)
||...+.+|++.+++++.+++ ||||+|++|+.++..... +++| +.+.+..+....|..+||..
T Consensus 2 Pi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 2 PIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred CchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 678899999999999887776 999999999999876432 1111 23344455566788899999
Q ss_pred cCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCchhhhHH
Q psy12726 169 PSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPPGLLKQ 248 (558)
Q Consensus 169 p~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll~~lk~ 248 (558)
+++.. .+..+.|. ++|.|.+++.+ ..++. |..+++||+||+|||++++|++++++++
T Consensus 82 r~~~~--~s~~t~I~---v~T~G~Llr~l-~~d~~-----------------L~~v~~VIiDEaHER~L~~Dl~L~ll~~ 138 (819)
T TIGR01970 82 RGENK--VSRRTRLE---VVTEGILTRMI-QDDPE-----------------LDGVGALIFDEFHERSLDADLGLALALD 138 (819)
T ss_pred ccccc--cCCCCcEE---EECCcHHHHHH-hhCcc-----------------cccCCEEEEeccchhhhccchHHHHHHH
Confidence 98876 44455566 78999988873 33566 9999999999999999999999999998
Q ss_pred Hhh-cCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecC
Q psy12726 249 AVK-KRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTG 327 (558)
Q Consensus 249 ~l~-~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g 327 (558)
+.. .++++|+|+||||++.+.|.+||+++|+|.++|+.|||+++|++....+++...+...+..+.....|+||||+||
T Consensus 139 i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg 218 (819)
T TIGR01970 139 VQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPG 218 (819)
T ss_pred HHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 876 5889999999999999999999999999999999999999999877777776665555544445567999999999
Q ss_pred hHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhhh
Q psy12726 328 KLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHEL 407 (558)
Q Consensus 328 ~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 407 (558)
..||++..
T Consensus 219 ~~eI~~l~------------------------------------------------------------------------ 226 (819)
T TIGR01970 219 QAEIRRVQ------------------------------------------------------------------------ 226 (819)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 99986532
Q ss_pred hhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhcCCC
Q psy12726 408 VQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLGP 487 (558)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 487 (558)
+.|.+.. +
T Consensus 227 --------------------------------------------------------------------~~L~~~~---~- 234 (819)
T TIGR01970 227 --------------------------------------------------------------------EQLAERL---D- 234 (819)
T ss_pred --------------------------------------------------------------------HHHHhhc---C-
Confidence 1111110 0
Q ss_pred CCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 488 DVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 488 ~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
.++.|+||||+|+.++|.++|++.++|.|||||||||||||||||||+||||+|..|.+.|+..
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 2488999999999999999999999999999999999999999999999999998876665543
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.3e-44 Score=402.57 Aligned_cols=279 Identities=30% Similarity=0.353 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc--cee-------E----eeCCCCCceeeeCCeEEEE
Q psy12726 105 KRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF--RNA-------A----KKDPQEGYRTLVDSQVVYI 167 (558)
Q Consensus 105 ~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~--~~~-------A----~~r~~~~~~~~~~~~v~~i 167 (558)
+||+..+.+|++.+++++.+++ ||||++++|+.++..+.. ..+ + +.+.+..+....|..+||.
T Consensus 4 LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 4 LPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 6899999999999998887666 999999999999986543 111 1 2334444555678899999
Q ss_pred ecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCchhhhH
Q psy12726 168 HPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPPGLLK 247 (558)
Q Consensus 168 hp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll~~lk 247 (558)
.+++.. .+..+.|. ++|.|.+++. ...++. +..+++||+||+|||++++|++|++++
T Consensus 84 vr~~~~--~~~~t~I~---v~T~G~Llr~-l~~d~~-----------------L~~v~~IIlDEaHER~l~~Dl~L~ll~ 140 (812)
T PRK11664 84 MRAESK--VGPNTRLE---VVTEGILTRM-IQRDPE-----------------LSGVGLVILDEFHERSLQADLALALLL 140 (812)
T ss_pred ecCccc--cCCCCcEE---EEChhHHHHH-HhhCCC-----------------cCcCcEEEEcCCCccccccchHHHHHH
Confidence 998876 44555565 7999998887 444666 999999999999999999999999999
Q ss_pred HHhh-cCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEec
Q psy12726 248 QAVK-KRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVLLFLT 326 (558)
Q Consensus 248 ~~l~-~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~ 326 (558)
+++. .++++|+|+||||++.+.|++||+++|+|.++|+.|||+++|.+.+..++++..+..++..+.....|+||||+|
T Consensus 141 ~i~~~lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlp 220 (812)
T PRK11664 141 DVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLP 220 (812)
T ss_pred HHHHhCCccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 9886 578999999999999999999999999999999999999999987777888877666666565666899999999
Q ss_pred ChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhh
Q psy12726 327 GKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHE 406 (558)
Q Consensus 327 g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (558)
|..|++...
T Consensus 221 g~~ei~~l~----------------------------------------------------------------------- 229 (812)
T PRK11664 221 GVGEIQRVQ----------------------------------------------------------------------- 229 (812)
T ss_pred CHHHHHHHH-----------------------------------------------------------------------
Confidence 999986532
Q ss_pred hhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhcCC
Q psy12726 407 LVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLG 486 (558)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 486 (558)
+.|.+..
T Consensus 230 ---------------------------------------------------------------------~~L~~~~---- 236 (812)
T PRK11664 230 ---------------------------------------------------------------------EQLASRV---- 236 (812)
T ss_pred ---------------------------------------------------------------------HHHHHhc----
Confidence 1111100
Q ss_pred CCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcc
Q psy12726 487 PDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKY 552 (558)
Q Consensus 487 ~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~ 552 (558)
...+.++||||.|+.++|.++|++.++|.|||||||||||||||||||+||||+|..|++.|+.
T Consensus 237 --~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 237 --ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDP 300 (812)
T ss_pred --cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccc
Confidence 0237899999999999999999999999999999999999999999999999999887666543
No 12
>KOG0924|consensus
Probab=100.00 E-value=1.9e-40 Score=339.55 Aligned_cols=214 Identities=46% Similarity=0.867 Sum_probs=207.3
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVYN 82 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~ 82 (558)
|.|||+ ++|++|||||.|+||||.|+.+||.+++++||+|||+..+|++|.+..++++.++.+|....|||+|+||+|+
T Consensus 762 g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~ 841 (1042)
T KOG0924|consen 762 GQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFN 841 (1042)
T ss_pred CccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHH
Confidence 899999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCceeeeCC
Q psy12726 83 SWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDS 162 (558)
Q Consensus 83 ~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~~~~~~ 162 (558)
+|.+++++..||.+|+|+.++|..++.+|+||++++++.++.+++| +++.++++|+|+||+.|+|+.+..++|.++.++
T Consensus 842 qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg 920 (1042)
T KOG0924|consen 842 QWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTG 920 (1042)
T ss_pred HHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEEccCC
Confidence 9999999999999999999999999999999999999999998877 899999999999999999998888899999999
Q ss_pred eEEEEecCCCCCCC-CCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCc
Q psy12726 163 QVVYIHPSSALFNR-QPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDP 218 (558)
Q Consensus 163 ~v~~ihp~s~l~~~-~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~ 218 (558)
..+++||+|++++. .|+||||+++++|++.||++++.++|+||.+++|-+|.+.+.
T Consensus 921 ~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~ 977 (1042)
T KOG0924|consen 921 IPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEA 977 (1042)
T ss_pred cceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEecccc
Confidence 99999999999887 899999999999999999999999999999999999988754
No 13
>KOG0921|consensus
Probab=100.00 E-value=9e-40 Score=342.80 Aligned_cols=346 Identities=23% Similarity=0.290 Sum_probs=255.1
Q ss_pred CHHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc---------------ceeE---eeCCCCCce
Q psy12726 100 QIRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF---------------RNAA---KKDPQEGYR 157 (558)
Q Consensus 100 ~~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~---------------~~~A---~~r~~~~~~ 157 (558)
..+.-.++.+.+..+.+....+.++++ +|||++|+-|++|++-.. +++| +.|++.+..
T Consensus 372 a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 372 AQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred hhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 345557888999999999999999887 899999999999874222 2233 456677778
Q ss_pred eeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccc
Q psy12726 158 TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTN 237 (558)
Q Consensus 158 ~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~ 237 (558)
.-.|..+||.+++.+.++. |.-.++ ++|.+.++|..-. - +...+|+++||.|||++
T Consensus 452 e~~g~tvgy~vRf~Sa~pr-pyg~i~---fctvgvllr~~e~---g-----------------lrg~sh~i~deiherdv 507 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPR-PYGSIM---FCTVGVLLRMMEN---G-----------------LRGISHVIIDEIHERDV 507 (1282)
T ss_pred Hhhcccccccccccccccc-ccccee---eeccchhhhhhhh---c-----------------ccccccccchhhhhhcc
Confidence 8889999999999998544 344555 7999998887221 1 77889999999999999
Q ss_pred cCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCC
Q psy12726 238 RISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREP 317 (558)
Q Consensus 238 ~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~ 317 (558)
++|||+.+++.+....++|++||||||+|.+.|+.||+.||.+.++||+|||+.||+++ .+
T Consensus 508 ~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led----~~--------------- 568 (1282)
T KOG0921|consen 508 DTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED----II--------------- 568 (1282)
T ss_pred chHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH----hh---------------
Confidence 99999999999999999999999999999999999999999999999999999999873 11
Q ss_pred CCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccC
Q psy12726 318 PGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNR 397 (558)
Q Consensus 318 ~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (558)
..+.|+|+...-.+... + .++... ..+|...++.- .++..+....+....+
T Consensus 569 --~~~~~vp~~~~~~k~k~---~---------------------~~~~~~-~~ddK~~n~n~--~~dd~~~~~~~~am~~ 619 (1282)
T KOG0921|consen 569 --QMTQFVPSEPSQKKRKK---D---------------------DDEEDE-EVDDKGRNMNI--LCDPSYNESTRTAMSR 619 (1282)
T ss_pred --hhhhccCCCcCccchhh---c---------------------ccccCc-hhhhccccccc--ccChhhcchhhhhhhc
Confidence 12345555432211110 0 000000 00111111111 1112222222233334
Q ss_pred CCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHH
Q psy12726 398 QPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEI 477 (558)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~ 477 (558)
..+..+..++++-+..++. ...-++++++|+||. ++|..+|..
T Consensus 620 ~se~d~~f~l~Eal~~~i~--s~~i~gailvflpgw-----------------------------------a~i~~L~~~ 662 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIA--SRNIDGAVLVFLPGW-----------------------------------AEIMTLCNR 662 (1282)
T ss_pred chhhcchhHHHHHHHhhhc--ccCCccceeeecCch-----------------------------------HHhhhhhhh
Confidence 4566677777777766653 344578899999986 567777766
Q ss_pred HHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccccc
Q psy12726 478 LYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHRCA 556 (558)
Q Consensus 478 l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~~~ 556 (558)
+..+-- .....++.++|+||.++..+|++||.+.|.|++|||++||||||||||+||+||||+|+.|++.+.-|.+.
T Consensus 663 ll~~~~--fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~ 739 (1282)
T KOG0921|consen 663 LLEHQE--FGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNM 739 (1282)
T ss_pred hhhhhh--hccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccce
Confidence 554321 22345799999999999999999999999999999999999999999999999999999988887776653
No 14
>KOG0922|consensus
Probab=100.00 E-value=9.1e-38 Score=323.32 Aligned_cols=217 Identities=61% Similarity=1.021 Sum_probs=204.5
Q ss_pred CCCCCc-c-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHH-HHHHHhhhcCCCCCHHHHHH
Q psy12726 3 SLVVTP-I-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQAL-ADQKKAKFNQMEGDHITLLA 79 (558)
Q Consensus 3 ~~~lT~-l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~-~~~~~~~~~~~~sD~l~~l~ 79 (558)
+|.||+ + ++|++||++|.++|||+.|..+||.+++++|||+||++++|.+|.+.+.+ ++..+.+|...+|||+++|+
T Consensus 453 ~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~ 532 (674)
T KOG0922|consen 453 RGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLN 532 (674)
T ss_pred cCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHH
Confidence 389999 7 79999999999999999999999999999999999999999999988777 89999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCceee
Q psy12726 80 VYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTL 159 (558)
Q Consensus 80 ~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~~~ 159 (558)
+|+.|.+++.+++||.+||++.+.|+.+..+|+||.+++.+.++....|+.+...+++++++||+.|+|.+...+.|.++
T Consensus 533 vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti 612 (674)
T KOG0922|consen 533 VYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTI 612 (674)
T ss_pred HHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEc
Confidence 99999999999999999999999999999999999999999988888888888899999999999999977645559999
Q ss_pred eCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcc
Q psy12726 160 VDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPT 219 (558)
Q Consensus 160 ~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~ 219 (558)
.+++.+++||+|+++..+|+|++|+++..|++.|+|.++.++++||.+++|++++.++.+
T Consensus 613 ~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~~~ 672 (674)
T KOG0922|consen 613 RGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSDET 672 (674)
T ss_pred cCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhccccc
Confidence 999999999999999888999999999999999999999999999999999998776654
No 15
>KOG0925|consensus
Probab=100.00 E-value=1.7e-35 Score=293.69 Aligned_cols=215 Identities=46% Similarity=0.831 Sum_probs=198.5
Q ss_pred CCCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCCh-hHHHHHHHHHhhhcCCCCCHHHHHH
Q psy12726 2 DSLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPK-DKQALADQKKAKFNQMEGDHITLLA 79 (558)
Q Consensus 2 ~~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~-~~~~~~~~~~~~~~~~~sD~l~~l~ 79 (558)
|+|.||++ ..|++||+||.+||||+.+++|+|.+++++|+||||+.+.|.+|. +.++.++.+++.|++..|||++++|
T Consensus 450 DdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLln 529 (699)
T KOG0925|consen 450 DDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLN 529 (699)
T ss_pred CCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHH
Confidence 35999999 899999999999999999999999999999999999999999988 7777889999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCcceeEeeCCCCC
Q psy12726 80 VYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFFRNAAKKDPQEG 155 (558)
Q Consensus 80 ~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~~~~A~~r~~~~ 155 (558)
+|++|+.+....+||++||||+++|..+..+|+||.++|.+.++... ++.....-++++|.+||+.++|+....+.
T Consensus 530 VYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~ 609 (699)
T KOG0925|consen 530 VYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGH 609 (699)
T ss_pred HHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 99999999889999999999999999999999999999999887765 45455556999999999999997766668
Q ss_pred ceeeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCC
Q psy12726 156 YRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSD 217 (558)
Q Consensus 156 ~~~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~ 217 (558)
|.++..++++.+||++.+- ..|+|++|++..-|++.|+|.++.|.|+||.+++|++|..++
T Consensus 610 Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsN 670 (699)
T KOG0925|consen 610 YLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSN 670 (699)
T ss_pred eEEEecCceEEeccccccC-CCCCeEEEeeEEeeccceeeeecccCHHHHHHhchhhccccc
Confidence 9999999999999999873 678999999999999999999999999999999999997655
No 16
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.4e-34 Score=312.72 Aligned_cols=111 Identities=17% Similarity=0.284 Sum_probs=91.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEeccc--chHHHhhhcCCCCEEEecCCC-CcceeeccCCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATL--DAVKFSSYFFEAPIFTIPGRT-FPVEVLYTKEP 297 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl--~~~~F~~yF~~~pvi~Ipgr~-fpV~~~yl~~~ 297 (558)
|..++++++||+|||+.++|++++++++++.+++ ++|+||||+ +.+.|.+||+++++|+|+|++ |||+++|.+..
T Consensus 289 L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~r--q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~ 366 (675)
T PHA02653 289 LFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIR--SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNK 366 (675)
T ss_pred cccCCEEEccccccCccchhHHHHHHHHhhhhcC--EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecC
Confidence 8899999999999999999999999998775432 899999999 567999999999999999996 99999998754
Q ss_pred C-----cchHHHHHHHHHHHHhc---CCCCCEEEEecChHHHHH
Q psy12726 298 E-----TDYLDASLITVMQIHLR---EPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 298 ~-----~d~~~~~~~~~~~i~~~---~~~g~iLvfl~g~~ei~~ 333 (558)
. .+|++.....+.+++.. ...|++|||+||..++.+
T Consensus 367 ~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 367 YNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred cccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 2 35666655555665543 235799999999988754
No 17
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.8e-32 Score=310.29 Aligned_cols=211 Identities=27% Similarity=0.499 Sum_probs=189.9
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVYN 82 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~ 82 (558)
++||++ +.|++||+||++||||+.|..+||++++++|||+||+++||..|.+++..++..+..|.+..|||++++|+|+
T Consensus 480 ~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~ 559 (1294)
T PRK11131 480 YKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWN 559 (1294)
T ss_pred ccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 579999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc------CCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCc
Q psy12726 83 SWRNN------KFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGY 156 (558)
Q Consensus 83 ~~~~~------~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~ 156 (558)
.|... +..++||++||||+++|+++.+++.||.+++++.++....+..+...+..+|++||+.|+|.....+.+
T Consensus 560 ~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~ 639 (1294)
T PRK11131 560 YLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQE 639 (1294)
T ss_pred HHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCe
Confidence 99752 123589999999999999999999999999999888766555567778999999999999966544333
Q ss_pred eeeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccc
Q psy12726 157 RTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFK 214 (558)
Q Consensus 157 ~~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~ 214 (558)
+...++..+++||+|++++.+|+||+|+|++.|++.|+|.++.|+|+||.+++|+++.
T Consensus 640 y~~~~~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~ 697 (1294)
T PRK11131 640 YTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIK 697 (1294)
T ss_pred EEccCCcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhcc
Confidence 4455677899999999998899999999999999999999999999999999999874
No 18
>KOG0923|consensus
Probab=100.00 E-value=9e-33 Score=283.09 Aligned_cols=217 Identities=48% Similarity=0.910 Sum_probs=201.8
Q ss_pred CCC-CCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCC-CCccCChhHHHHHHHHHhhhcCCCCCHHHH
Q psy12726 1 MDS-LVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQ-NVFYRPKDKQALADQKKAKFNQMEGDHITL 77 (558)
Q Consensus 1 ~~~-~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~-~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~ 77 (558)
||. |+||.+ ++|++||+||+|||||+.+..++|.+++++||||||+. ++|.+|.++...++.+++.|....|||+.+
T Consensus 667 Ln~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~ 746 (902)
T KOG0923|consen 667 LNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVL 746 (902)
T ss_pred cccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhh
Confidence 344 899999 99999999999999999999999999999999999996 699999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCce
Q psy12726 78 LAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYR 157 (558)
Q Consensus 78 l~~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~ 157 (558)
|++|+.|...+.+.+||++|++++++|.+++.+|.||..++....+...++-.+...++.++.+||+.++|.....+.|.
T Consensus 747 L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~ 826 (902)
T KOG0923|consen 747 LNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYR 826 (902)
T ss_pred hHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccCCCcce
Confidence 99999999999999999999999999999999999999999887776666656677799999999999999888888899
Q ss_pred eeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCC
Q psy12726 158 TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSD 217 (558)
Q Consensus 158 ~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~ 217 (558)
+.-....+++||.|.++...|.|++|++++.|++.|+|.++.+.++||.+++||+|...+
T Consensus 827 tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kd 886 (902)
T KOG0923|consen 827 TVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKD 886 (902)
T ss_pred eeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhh
Confidence 888777899999999998889999999999999999999999999999999999987554
No 19
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=5.4e-30 Score=291.36 Aligned_cols=223 Identities=29% Similarity=0.497 Sum_probs=192.4
Q ss_pred CCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q psy12726 5 VVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVYNS 83 (558)
Q Consensus 5 ~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~ 83 (558)
+||++ +.|++||+||++||||+.|..+||++++++|||+||+++||..|.+++..++..+..|....|||++++|+|+.
T Consensus 472 ~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~ 551 (1283)
T TIGR01967 472 QLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRH 551 (1283)
T ss_pred cccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 79999 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC------CchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCce
Q psy12726 84 WRNNK------FSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYR 157 (558)
Q Consensus 84 ~~~~~------~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~ 157 (558)
|.... ..+.||++||||++.|+++.++++||.+++.+.++....+..+...+..++++||+.++|.++..+.|.
T Consensus 552 ~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~ 631 (1283)
T TIGR01967 552 IEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYD 631 (1283)
T ss_pred HHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEE
Confidence 96531 236899999999999999999999999999877665443334455688899999999999776555555
Q ss_pred eeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccc
Q psy12726 158 TLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQR 235 (558)
Q Consensus 158 ~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her 235 (558)
..++..+++||+|.+++.+|+|++|++++.|++.|++.++.++|+||.+++|+++. ..|....||+...|
T Consensus 632 -~~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~-------~~~~~~~w~~~~g~ 701 (1283)
T TIGR01967 632 -GARGRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIK-------KNYFEPHWEKKRGQ 701 (1283)
T ss_pred -ecCCcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhE-------eccCceeeccCCCe
Confidence 55677899999999987779999999999999999999999999999999999853 23355666655444
No 20
>KOG0926|consensus
Probab=99.89 E-value=1.7e-23 Score=218.99 Aligned_cols=217 Identities=26% Similarity=0.459 Sum_probs=177.5
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCC-------------hhH------------
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRP-------------KDK------------ 56 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~-------------~~~------------ 56 (558)
+|.||++ +.|+.||+.||+||||+.+.+.+|+..+..++++||++.+|..- .++
T Consensus 768 ~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d 847 (1172)
T KOG0926|consen 768 NGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVED 847 (1172)
T ss_pred cCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhcccccccccc
Confidence 3799999 89999999999999999999999999999999999998877421 011
Q ss_pred -------HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCccee---
Q psy12726 57 -------QALADQKKAKFNQMEGDHITLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVV--- 126 (558)
Q Consensus 57 -------~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~--- 126 (558)
+.....++..|....||-+.++.+..++........||..|+|+.++|.++.++|+||..+++...+..+
T Consensus 848 ~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~ 927 (1172)
T KOG0926|consen 848 KELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKS 927 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 1112233455666678999999999999877777789999999999999999999999999985443222
Q ss_pred -----cCCCch--HHHHHHHHcCCcceeEeeCCCCCceeeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccc-ccccccc
Q psy12726 127 -----SAGKNT--VRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTK-EYMREVT 198 (558)
Q Consensus 127 -----gsgkst--~i~~~lL~~g~~~~~A~~r~~~~~~~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~-~~lr~~~ 198 (558)
....++ .+++..+|+||.+++|++.....|....-+..+|+|++|++++..|+|++|.+++.|.. .++..++
T Consensus 928 ~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~ 1007 (1172)
T KOG0926|consen 928 WDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVT 1007 (1172)
T ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceE
Confidence 112233 34778899999999997666666777766778999999999999999999999998876 4566699
Q ss_pred ccChHHHHHhcCcccccCCcc
Q psy12726 199 SIDPKWLVEFAPAFFKFSDPT 219 (558)
Q Consensus 199 ~i~~~wL~~~~~~~~~~~~~~ 219 (558)
.+.|+||..+++.++.++.+.
T Consensus 1008 ~v~pewl~~~~~slcn~~e~~ 1028 (1172)
T KOG0926|consen 1008 AVRPEWLLNHAKSLCNFSEPL 1028 (1172)
T ss_pred EEchHHHHhhhhhhccccccc
Confidence 999999999999999988765
No 21
>KOG0920|consensus
Probab=99.89 E-value=7.5e-23 Score=223.85 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=176.1
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCC-CCHHHHHHHH
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQME-GDHITLLAVY 81 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~-sD~l~~l~~~ 81 (558)
.+|||+ +.|+.||+||++||||+.|..|+|++++++|||+|+.++||..|.++++..++.+..|.... |||++++++|
T Consensus 611 e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay 690 (924)
T KOG0920|consen 611 EELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAY 690 (924)
T ss_pred ccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHH
Confidence 689999 89999999999999999999999999999999999999999999999999999999887665 9999999999
Q ss_pred HHHHhcC-----CchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceec------------CCCchHHHHHHHHcCCc
Q psy12726 82 NSWRNNK-----FSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVS------------AGKNTVRVQKAVCSGFF 144 (558)
Q Consensus 82 ~~~~~~~-----~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~g------------sgkst~i~~~lL~~g~~ 144 (558)
+.|.+.. ...+||.+|||+..+|+++..++.|+.+.+...++...+ .+.+..+++.++++|++
T Consensus 691 ~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~ly 770 (924)
T KOG0920|consen 691 AGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLY 770 (924)
T ss_pred HHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCC
Confidence 9998632 446899999999999999999999999999988876542 13356789999999999
Q ss_pred ceeEeeCC---CCCceeeeC--CeEEEEecCCCCCCC---CCCEEEEEeeeeccc-cccccccccChHHHHHhcCcc
Q psy12726 145 RNAAKKDP---QEGYRTLVD--SQVVYIHPSSALFNR---QPEWVIYHELVQTTK-EYMREVTSIDPKWLVEFAPAF 212 (558)
Q Consensus 145 ~~~A~~r~---~~~~~~~~~--~~v~~ihp~s~l~~~---~~~~ii~~~l~~T~~-~~lr~~~~i~~~wL~~~~~~~ 212 (558)
+++|..+. .....+..+ ...+++||+|+.+.. ..+|++|.+...|++ .++|.++.+.+..+..++...
T Consensus 771 P~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~ 847 (924)
T KOG0920|consen 771 PNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGI 847 (924)
T ss_pred CceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCc
Confidence 99994432 111111222 247899999998532 345999999999988 999999999999887776654
No 22
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.68 E-value=4.4e-17 Score=179.64 Aligned_cols=208 Identities=30% Similarity=0.384 Sum_probs=163.7
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCC---CccCChhHHH---HHHHHH-hhhcC---CC
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQN---VFYRPKDKQA---LADQKK-AKFNQ---ME 71 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~ 71 (558)
+|.||++ ++|+.||+|||+|+||+.|..+||+.++++|||+|++++ .|..+.+.+. ..+..+ ..+.. ..
T Consensus 451 ~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 530 (845)
T COG1643 451 SGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPR 530 (845)
T ss_pred CCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcc
Confidence 3899999 899999999999999999999999999999999999998 5766655444 333333 33444 56
Q ss_pred CCHHHHHHHHHHHHhcC------CchHHHHHccCCHHHHHHHHHHHHHHHHHhHh-cCcceecCCCc-------------
Q psy12726 72 GDHITLLAVYNSWRNNK------FSNAWCYENFVQIRTLKRAQDVRKQLLGIMDR-HKLDVVSAGKN------------- 131 (558)
Q Consensus 72 sD~l~~l~~~~~~~~~~------~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~-~~~~~~gsgks------------- 131 (558)
+||++++++|..|...+ ....||..++++.+.|..+..++.+++..... .+.+......+
T Consensus 531 ~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (845)
T COG1643 531 GDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHC 610 (845)
T ss_pred hHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhh
Confidence 99999999999997665 56789999999999999999988888877655 33222211111
Q ss_pred -----hHHHHHHHHcCCcceeEeeCCCCC-ceeeeCCeEEEEecCC-CCCCCCCCEEEEEeeeeccccccc---------
Q psy12726 132 -----TVRVQKAVCSGFFRNAAKKDPQEG-YRTLVDSQVVYIHPSS-ALFNRQPEWVIYHELVQTTKEYMR--------- 195 (558)
Q Consensus 132 -----t~i~~~lL~~g~~~~~A~~r~~~~-~~~~~~~~v~~ihp~s-~l~~~~~~~ii~~~l~~T~~~~lr--------- 195 (558)
....+.++.+|+..+++....... |.+..++..+++|+++ ......++|+.|++.+.|...|++
T Consensus 611 ~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (845)
T COG1643 611 YSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPD 690 (845)
T ss_pred ccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcc
Confidence 245677889999999996665544 7777778899999999 444567899999999999998998
Q ss_pred --cccccChHHHHHhcC
Q psy12726 196 --EVTSIDPKWLVEFAP 210 (558)
Q Consensus 196 --~~~~i~~~wL~~~~~ 210 (558)
.++.....||....+
T Consensus 691 ~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 691 VQTLIELLKLWLKEQVK 707 (845)
T ss_pred cchHhhhHHHhhhhhcc
Confidence 467777888877665
No 23
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.62 E-value=4.1e-15 Score=166.48 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=139.1
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVY 81 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~ 81 (558)
+|+||++ +.|++||+||++||||+.|..+||.+++++|||+|++++++.. ..+|+...+..+
T Consensus 399 ~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~~~d~~~~~~~~ 461 (819)
T TIGR01970 399 QGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------GGADLMNRLHRL 461 (819)
T ss_pred CCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------CcccHHHHHHHH
Confidence 3799999 8999999999999999999999999999999999999987531 136877777666
Q ss_pred HHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCceeeeC
Q psy12726 82 NSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVD 161 (558)
Q Consensus 82 ~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~~~~~ 161 (558)
+... ...| ..+.+..+++...+..... ..+...+.. +..+++.||++++|.+|.....+.+.+
T Consensus 462 ~~~~-----~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~lla~a~pdria~~r~~~~~y~l~~ 524 (819)
T TIGR01970 462 QQGR-----QGRG----------QRAQQLAKKLRRRLRFSQA-DSGAIASHA-LGLLLALAFPDRIAKRRGQPGRYQLAN 524 (819)
T ss_pred hhcc-----hhhH----------HHHHHHHHHHHHHhCcCcC-CCcccccch-HhHHHhhhChHhheeccCCCCeEECCC
Confidence 4321 1111 1233444455443221000 000001112 677899999999998775544567899
Q ss_pred CeEEEEecCCCCCCCCCCEEEEEeeeec---cccccccccccChHHHHHhcCcccccCCcccccccccceecccccc
Q psy12726 162 SQVVYIHPSSALFNRQPEWVIYHELVQT---TKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQR 235 (558)
Q Consensus 162 ~~v~~ihp~s~l~~~~~~~ii~~~l~~T---~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her 235 (558)
|+.+.+++.|.+ ...+|++..++..+ ....++.+++++++|+...+++. +.....+.||+..+|
T Consensus 525 G~~~~l~~~~~l--~~~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~--------~~~~~~~~wd~~~~~ 591 (819)
T TIGR01970 525 GRGAVLSAEDAL--AREPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDL--------VVQVDQVDWDETKGR 591 (819)
T ss_pred CCeeEeCCCCcc--cCCCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHH--------ceEEEEEEEecCCCe
Confidence 999999999999 66799999998634 22578899999999999999988 777789999988766
No 24
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.57 E-value=1.7e-14 Score=161.93 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=133.6
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChH--HHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHH
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSD--EVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLA 79 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~--~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~ 79 (558)
+|+||++ +.|++||+||++||||+.|..+||.. .++.+||+|+++++ . . .+|....+.
T Consensus 402 ~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-~-~-----------------~~d~~~~l~ 462 (812)
T PRK11664 402 QGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-S-G-----------------SSDLGVALS 462 (812)
T ss_pred CCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-C-C-----------------cccHHHHHH
Confidence 4899999 89999999999999999999998764 78999999988642 1 0 246544444
Q ss_pred HHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCceee
Q psy12726 80 VYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTL 159 (558)
Q Consensus 80 ~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~~~ 159 (558)
.+. ..|+ ..+.++.+++.... + ..+...+..+++.||++++|.+|....++.+
T Consensus 463 ~~~--------~~~~----------~~~~~~~~~~~~~~--------~-~~~~~~~~~~la~aypdriA~~r~~~~~~~l 515 (812)
T PRK11664 463 RKQ--------PHWQ----------QRAQQLLKRLNVRG--------G-EADSSLIAPLLALAFPDRIARRRGQDGRYQL 515 (812)
T ss_pred HHH--------HHHH----------HHHHHHHHHHHhhc--------c-cCChHHHHHHHHHHCHHHHhhhcCCCCeEEe
Confidence 332 1232 22344444443311 0 1123347889999999999987766567889
Q ss_pred eCCeEEEEecCCCCCCCCCCEEEEEeeeecc-c--cccccccccChHHHHHhcCcccccCCcccccccccceecccccc
Q psy12726 160 VDSQVVYIHPSSALFNRQPEWVIYHELVQTT-K--EYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQR 235 (558)
Q Consensus 160 ~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~-~--~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her 235 (558)
.||+.+++|+.|.+ ...+|+++.++..++ + ..++.+++++++||.+++++. +.....+.||+..+|
T Consensus 516 ~~G~~a~l~~~~~l--~~~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~--------~~~~~~~~~d~~~~~ 584 (812)
T PRK11664 516 ANGMGAMLDADDAL--SRHEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQL--------VQQSDTVEWDEAKGT 584 (812)
T ss_pred eCCCeEEECCCCcc--cCCCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHh--------ceeeeEEEEecCCCe
Confidence 99999999999999 567999999986543 2 568889999999999999998 778889999988776
No 25
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.55 E-value=5.7e-15 Score=123.70 Aligned_cols=76 Identities=42% Similarity=0.755 Sum_probs=52.8
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHH--HHH---------hhhcCC
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALAD--QKK---------AKFNQM 70 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~--~~~---------~~~~~~ 70 (558)
+|+||++ +.|++||++||+||||+.|..+||++++++|||+|+++++|..+.+.++..+ ..+ ..+...
T Consensus 15 ~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (102)
T PF04408_consen 15 NGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDD 94 (102)
T ss_dssp TS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHHTT----------BT
T ss_pred CCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 4899999 8999999999999999999999999999999999999999998653332222 233 334777
Q ss_pred CCCHHHHH
Q psy12726 71 EGDHITLL 78 (558)
Q Consensus 71 ~sD~l~~l 78 (558)
.|||+++|
T Consensus 95 ~sDhltlL 102 (102)
T PF04408_consen 95 ESDHLTLL 102 (102)
T ss_dssp TBHHHHHH
T ss_pred CCCHHhcC
Confidence 89999986
No 26
>KOG0921|consensus
Probab=99.55 E-value=5.4e-15 Score=157.38 Aligned_cols=190 Identities=9% Similarity=0.008 Sum_probs=139.9
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETD 300 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d 300 (558)
.....+.+.|+.|+|+++||+++-+++.+. + +++|++|.+...|-.||..|+.++||++++|++.+|.++-...
T Consensus 519 m~~ty~dl~v~lmsatIdTd~f~~~f~~~p----~--~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~ 592 (1282)
T KOG0921|consen 519 MISTYRDLRVVLMSATIDTDLFTNFFSSIP----D--VTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDE 592 (1282)
T ss_pred hhccchhhhhhhhhcccchhhhhhhhcccc----c--eeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCc
Confidence 556678899999999999999999887764 3 3999999999999999999999999999999999986531111
Q ss_pred hH--------------------------------HHHHHH-HHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhccccee
Q psy12726 301 YL--------------------------------DASLIT-VMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVV 347 (558)
Q Consensus 301 ~~--------------------------------~~~~~~-~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~ 347 (558)
.. .....+ ...|....-+|.||||+||..+|.-++..++....
T Consensus 593 ~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~---- 668 (1282)
T KOG0921|consen 593 EVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE---- 668 (1282)
T ss_pred hhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh----
Confidence 11 111111 12233444578889999988888654322211100
Q ss_pred cCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhh
Q psy12726 348 SAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLV 427 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 427 (558)
--++..
T Consensus 669 ------------------------------------------------------------fg~~~~-------------- 674 (1282)
T KOG0921|consen 669 ------------------------------------------------------------FGQANK-------------- 674 (1282)
T ss_pred ------------------------------------------------------------hccchh--------------
Confidence 000000
Q ss_pred hhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHH
Q psy12726 428 EFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQT 507 (558)
Q Consensus 428 ~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~ 507 (558)
++.+ ...+..++++|+.+...+|+
T Consensus 675 ---------------------------------------------------y~il-----p~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 675 ---------------------------------------------------YEIL-----PLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred ---------------------------------------------------cccc-----cchhhcccHhhhhccCcccc
Confidence 0000 01247799999999999999
Q ss_pred hhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhh
Q psy12726 508 RIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQA 550 (558)
Q Consensus 508 ~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~ 550 (558)
.||+..+.+.++++.+||++|++||+-++.||+|+|.++++.+
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~ 741 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTH 741 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceee
Confidence 9999999999999999999999999999999999998876644
No 27
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.47 E-value=1.7e-13 Score=117.70 Aligned_cols=101 Identities=49% Similarity=0.916 Sum_probs=78.2
Q ss_pred HHHHHHhHhcCcceecC-----------C--CchHHHHHHHHcCCcceeEeeCCCCCceeeeCCeEEEEecCCCCCCCCC
Q psy12726 112 KQLLGIMDRHKLDVVSA-----------G--KNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQP 178 (558)
Q Consensus 112 ~qL~~~l~~~~~~~~gs-----------g--kst~i~~~lL~~g~~~~~A~~r~~~~~~~~~~~~v~~ihp~s~l~~~~~ 178 (558)
+||.++|++.++..... . .+...++.++++||++++|.+...+.|.+..++..+++||+|++++..|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 57888888777654411 1 3457899999999999999877777899887888999999999988899
Q ss_pred CEEEEEeeeeccccccccccccChHHHHHhcCcc
Q psy12726 179 EWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAF 212 (558)
Q Consensus 179 ~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~ 212 (558)
+|++|.+++.|++.||+.++.|+|+||.+++|++
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999874
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.44 E-value=4.3e-13 Score=143.83 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=55.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+.+.++||.+++.++.++++....|..+|+|||++||.+|.||+|.+||+.+.-.....-.||
T Consensus 267 ~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR 329 (460)
T PRK11776 267 FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHR 329 (460)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhh
Confidence 678999999999999999999889999999999999999999999999999876544444444
No 29
>PRK01172 ski2-like helicase; Provisional
Probab=99.43 E-value=5.7e-13 Score=149.28 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=70.8
Q ss_pred ccccccceecccccccc--cCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcCCCCEEEecCCCCcceee--ccC
Q psy12726 221 LSKFKKNQRLEPLQRTN--RISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFFEAPIFTIPGRTFPVEVL--YTK 295 (558)
Q Consensus 221 l~~~~~vi~De~her~~--~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~~~pvi~Ipgr~fpV~~~--yl~ 295 (558)
+.+.+.+++||+|...- ....+-.+++.+...++++++|.||||+ +++.|++|++ ++.+....|..|+++. |..
T Consensus 133 l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~ 211 (674)
T PRK01172 133 INDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRK 211 (674)
T ss_pred HhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecC
Confidence 67889999999997631 1112223344444456889999999999 7899999885 6667778888888743 222
Q ss_pred CCCcc-hH--H-HHHHHHHHHHhcCCCCCEEEEecChHHHHHHHH
Q psy12726 296 EPETD-YL--D-ASLITVMQIHLREPPGDVLLFLTGKLDVRKQLL 336 (558)
Q Consensus 296 ~~~~d-~~--~-~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~ 336 (558)
....+ +. . .....+.+. ....+++|||++++.+++....
T Consensus 212 ~~~~~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 212 RLILDGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred eeeecccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHH
Confidence 11000 00 0 011111111 2346899999999998876543
No 30
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.42 E-value=2.3e-13 Score=112.08 Aligned_cols=74 Identities=50% Similarity=0.806 Sum_probs=65.4
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhcc-CChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCC-CCCHHHHH
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHL-QCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQM-EGDHITLL 78 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~-~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~-~sD~l~~l 78 (558)
|+||++ +.|++||++||+||||+.|+.+ +|.+++++|+|+++..++|..+ ..+......+..|... .|||++++
T Consensus 16 ~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 16 GRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRRFASGRESDHLTLL 92 (92)
T ss_pred CCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHHccCCCCCChhhhC
Confidence 799999 8999999999999999999999 8999999999999999988766 4556666777788877 79999863
No 31
>PTZ00110 helicase; Provisional
Probab=99.27 E-value=1.6e-11 Score=133.62 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=51.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQ 549 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~ 549 (558)
+.++.+||.++.+++.++++....|..+|+|||++|+.+|.||+|.+||+.+.-+...
T Consensus 402 ~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~ 459 (545)
T PTZ00110 402 WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIE 459 (545)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHH
Confidence 5678899999999999999988889999999999999999999999999987544433
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.27 E-value=2.4e-11 Score=133.70 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=49.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..||+.+++.++.++++....|..+|+|||++|+.+|.||+|.+||+.+.-
T Consensus 270 ~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 270 YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 678899999999999999998888999999999999999999999999986643
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.25 E-value=3.7e-11 Score=127.98 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=50.4
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
+.+..+||.++..++.++++...+|..+|+|||++|+.+|.||+|.+||+.+.-+
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC
Confidence 6688999999999999998888889999999999999999999999999977543
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.22 E-value=8.6e-11 Score=124.68 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=55.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHRC 555 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~~ 555 (558)
+.+..+||.++.+++.++++....|..+|+||||+|+.+|.||+|.+||+.+.-.....-+||+
T Consensus 280 ~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~ 343 (423)
T PRK04837 280 HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 343 (423)
T ss_pred CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecc
Confidence 6788999999999999999988899999999999999999999999999877555444444443
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.19 E-value=1.4e-10 Score=124.20 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=50.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhH
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEV 547 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~ 547 (558)
+.+..+||.++..+..++++....|..+|+|||++++-+|.||+|.+||+.+.-..
T Consensus 270 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~ 325 (456)
T PRK10590 270 IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNV 325 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCC
Confidence 66889999999999999988888899999999999999999999999999885443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.12 E-value=5.1e-10 Score=122.39 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=51.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHH
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVR 548 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~ 548 (558)
+.+..+||.++..++.++++....|..+|+|||+++|.+|.||+|.+||..+.-...
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~ 338 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDA 338 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCH
Confidence 678999999999999999988888999999999999999999999999997754333
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.12 E-value=3.3e-10 Score=122.01 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=50.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhH
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEV 547 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~ 547 (558)
+.+..+||.++.+++.++++....|..+|++|||++|.+|.||+|.+||..|.-..
T Consensus 360 ~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s 415 (475)
T PRK01297 360 INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPED 415 (475)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCC
Confidence 56788999999999999999888999999999999999999999999999875433
No 38
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.11 E-value=1.4e-09 Score=112.33 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=37.4
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
+.+..+||.++..++.++. ...|+|||++||.||.||++..|++.
T Consensus 299 ~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~p 343 (357)
T TIGR03158 299 DDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFSA 343 (357)
T ss_pred ceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCceEEECC
Confidence 5678899999998887765 34799999999999999999666653
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.10 E-value=4.9e-10 Score=118.20 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=50.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
+.+..+||.++.+++..+++....|..+|++||++++-+|.||+|.+||+.+...
T Consensus 292 ~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 292 FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC
Confidence 5688999999999999999888889999999999999999999999999876443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.07 E-value=7.6e-10 Score=122.22 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=54.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+.+.++||.|+.+++.++++....|..+|+|||++++.+|.||||++||+.+.-+....-|||
T Consensus 261 ~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr 323 (607)
T PRK11057 261 ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQE 323 (607)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHH
Confidence 678999999999999999998888999999999999999999999999998865544444443
No 41
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.05 E-value=6.3e-10 Score=120.73 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=49.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++.+++..+++....|..+|+|||++|+.+|.||+|++||..+.-
T Consensus 393 ~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 393 LKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred cceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCC
Confidence 678899999999999999998888999999999999999999999999987643
No 42
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=1.8e-09 Score=115.94 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=54.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+.+.++||.|+.+++.++++....|..+|++||++++.+|.+|||++||..+.-+....-|||
T Consensus 251 ~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 251 IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 568899999999999999888888999999999999999999999999998876655544444
No 43
>KOG0331|consensus
Probab=98.95 E-value=7.3e-09 Score=108.44 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=48.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
+....+||..++.+...+++....|...|+||||+|--+|-||||.+||+.
T Consensus 366 ~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 366 WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 779999999999999999999999999999999999999999999999984
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.94 E-value=5.7e-09 Score=115.86 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=36.9
Q ss_pred EeccCCCChHHHH-----hhcccCCC-----------CCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 495 LPVYSALPSEMQT-----RIFEAAPP-----------GSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 495 lpLhs~l~~~~Q~-----~vf~~~~~-----------g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
..|||.+++.+.. ++++...+ +..+|+|||+|||.||.||....|.|..
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a 362 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA 362 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCC
Confidence 7899999998877 44432221 2368999999999999999977777653
No 45
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.4e-08 Score=109.64 Aligned_cols=180 Identities=20% Similarity=0.248 Sum_probs=126.2
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcC-CCeeEEEEecccch--HHH-hhhcCCCCEEEecCC-----CCccee
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKR-PEIKLIVTSATLDA--VKF-SSYFFEAPIFTIPGR-----TFPVEV 291 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r-~~lKlIlMSATl~~--~~F-~~yF~~~pvi~Ipgr-----~fpV~~ 291 (558)
+.+...+++||+ .|.++..|.=.+ ..++..- ++...++.|||+.. ..+ .+|..++-.|.|.-. .-.|+.
T Consensus 172 l~~v~~lVlDEA-DrmLd~Gf~~~i-~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q 249 (513)
T COG0513 172 LSGVETLVLDEA-DRMLDMGFIDDI-EKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQ 249 (513)
T ss_pred hhhcCEEEeccH-hhhhcCCCHHHH-HHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceE
Confidence 889999999999 888888776555 3444443 46778888999987 223 336666667777622 245666
Q ss_pred eccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhccccc
Q psy12726 292 LYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKK 371 (558)
Q Consensus 292 ~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (558)
+|......+ ........+......+.++||......+.+..
T Consensus 250 ~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~------------------------------------ 290 (513)
T COG0513 250 FYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELA------------------------------------ 290 (513)
T ss_pred EEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHH------------------------------------
Confidence 666543222 24444555555666667899988776653311
Q ss_pred CCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccc
Q psy12726 372 DPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRL 451 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~ 451 (558)
T Consensus 291 -------------------------------------------------------------------------------- 290 (513)
T COG0513 291 -------------------------------------------------------------------------------- 290 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeecccccee
Q psy12726 452 EPLYNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSL 531 (558)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSi 531 (558)
..|. . ..+.+..|||.|++++..+++....+|.-+|.|||+||=-+|
T Consensus 291 ------------------------~~l~----~-----~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 291 ------------------------ESLR----K-----RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred ------------------------HHHH----H-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 1111 1 237899999999999999998888899999999999999999
Q ss_pred eeCCeEEEEcCChhhHHhhcccc
Q psy12726 532 TIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 532 TIpdV~~VID~g~~~~~~~~~~~ 554 (558)
-||+|.+||+.-.-...+..-||
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHR 360 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHR 360 (513)
T ss_pred CccccceeEEccCCCCHHHheec
Confidence 99999999986554444444444
No 46
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.89 E-value=1e-08 Score=106.42 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=39.3
Q ss_pred eEEEeccCCCChHHHHh----hcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQTR----IFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~----vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
..+.++||.++..++.+ +++...+|..+|+|||+++|.||.||....|.+
T Consensus 249 ~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~ 302 (358)
T TIGR01587 249 EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMITE 302 (358)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEEc
Confidence 46899999999887755 366666688999999999999999974433433
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.86 E-value=1.5e-08 Score=115.31 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=46.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
+.|..+||.|+.++..+++.....|..+|+|||+|+|.+|.||||..||
T Consensus 687 ~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 687 ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 6799999999999999999988899999999999999999999999999
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=98.85 E-value=3.3e-08 Score=111.74 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=47.0
Q ss_pred EEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 493 IILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 493 ~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
-|.++||+|+++++..+.+....|..||++||+.++.+|.||++.+||...
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~ 347 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT 347 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc
Confidence 488899999999999998888899999999999999999999999999543
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.84 E-value=2e-08 Score=112.90 Aligned_cols=55 Identities=20% Similarity=0.024 Sum_probs=49.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
..+.++||++++++.+++.+...+|..+|++|||++|-+|-||+|.+||..|.-.
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~ 358 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG 358 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC
Confidence 4578899999999999998888889999999999999999999999999988543
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.84 E-value=1.7e-08 Score=117.45 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=46.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
+.|..+||.|+.++..+++.....|..+|+|||+|+|.+|.||||.+||
T Consensus 836 ~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 (1147)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEE
Confidence 5688899999999999998888889999999999999999999999999
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.82 E-value=1.4e-08 Score=112.65 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=48.8
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
.+.|..+||.|++++..++++....|..+|+|||+++|.+|.||++.+||--+
T Consensus 482 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~ 534 (630)
T TIGR00643 482 KYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIED 534 (630)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeC
Confidence 47799999999999999999988889999999999999999999999998654
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=98.82 E-value=2.8e-08 Score=112.55 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=46.4
Q ss_pred EEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 493 IILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 493 ~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
-|-..||+|++.+++.+.+....|..+|++||+.++.+|.+|++++||..
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~ 354 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD 354 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec
Confidence 47778999999999999888888999999999999999999999999964
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.80 E-value=2.8e-08 Score=111.18 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=49.3
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.|..+||.|+.++..++++....|..+|+|||+++|.+|.||+|.+||--+..
T Consensus 506 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~ 559 (681)
T PRK10917 506 LRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAE 559 (681)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCC
Confidence 679999999999999999888888999999999999999999999999965543
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.75 E-value=4.2e-08 Score=112.56 Aligned_cols=53 Identities=26% Similarity=0.132 Sum_probs=48.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
..+..+||+|+.+++..+.+...+|..+|++||+++|-+|.||+|.+||-.|.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~ 367 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS 367 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC
Confidence 45888999999999998888888899999999999999999999999997664
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.71 E-value=7e-08 Score=106.78 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=52.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
+.+.++||.|+.++..++.+....|..+||+||+.++.+|.+|||++||..+.-+....-|+
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q 310 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ 310 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhh
Confidence 56789999999999998888777788999999999999999999999999886554443333
No 56
>KOG0336|consensus
Probab=98.64 E-value=1.5e-07 Score=93.65 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=60.0
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccch--HHH-hhhcCCCCEEEecC----CCCcceeec
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDA--VKF-SSYFFEAPIFTIPG----RTFPVEVLY 293 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~--~~F-~~yF~~~pvi~Ipg----r~fpV~~~y 293 (558)
|...+.+++||+ .|++++.|=-.+-|.++.-|||-..|+.|||... ..+ .+|..++-++.|.. ....|+.++
T Consensus 365 l~siTYlVlDEA-DrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i 443 (629)
T KOG0336|consen 365 LASITYLVLDEA-DRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI 443 (629)
T ss_pred eeeeEEEEecch-hhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE
Confidence 788999999999 8999999999999999999999999999999965 344 45776654444432 235566665
Q ss_pred cCCCCcchH
Q psy12726 294 TKEPETDYL 302 (558)
Q Consensus 294 l~~~~~d~~ 302 (558)
+-.++.+.+
T Consensus 444 ~v~~d~~k~ 452 (629)
T KOG0336|consen 444 IVTTDSEKL 452 (629)
T ss_pred EecccHHHH
Confidence 444444443
No 57
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.62 E-value=2e-07 Score=105.62 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=56.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHRC 555 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~~ 555 (558)
+.+.++||+|++++...+.+....|.-+|||||+.+.-+|-+|||+|||..+.-+.-+.-|||.
T Consensus 705 ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQri 768 (1195)
T PLN03137 705 HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQEC 768 (1195)
T ss_pred CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhh
Confidence 6789999999999999998888889999999999999999999999999988777666666653
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.53 E-value=6.4e-07 Score=105.53 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=48.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+...||+|+.++...+.+....|.-|||+||+.+|-+|-|++|.+||..|.
T Consensus 302 ~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs 354 (1490)
T PRK09751 302 FIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT 354 (1490)
T ss_pred eeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC
Confidence 55788999999999999988888899999999999999999999999998663
No 59
>PRK09694 helicase Cas3; Provisional
Probab=98.50 E-value=7e-07 Score=100.98 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=36.0
Q ss_pred eEEEeccCCCChHHHH----hhcccC-CCCC---eEEEEeeccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQT----RIFEAA-PPGS---RKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~----~vf~~~-~~g~---rkVIlaTNIAETSiTIpdV~~VID 541 (558)
..+..|||.++..+.+ ++++.. ++|. ++|+|||+|+|.||+| |+.+||-
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt 644 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT 644 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE
Confidence 5689999999987662 344332 2344 4899999999999999 5666663
No 60
>KOG0330|consensus
Probab=98.46 E-value=5.2e-07 Score=89.48 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=55.6
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccccc
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHRC 555 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~~ 555 (558)
.+..+||||+|+++...-+|.....|.|-|.+||+||-.++-||.|..||+.-.-..-+...|||
T Consensus 324 g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRv 388 (476)
T KOG0330|consen 324 GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRV 388 (476)
T ss_pred CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHc
Confidence 48899999999999999999999999999999999999999999999999965433334444554
No 61
>KOG0333|consensus
Probab=98.46 E-value=2.7e-06 Score=87.46 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+++..||++=++++...+++....|.--|.||||||--+|-||||..||+--..|....--||
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHR 604 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHR 604 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHH
Confidence 899999999988888777777777888999999999999999999999998777665544443
No 62
>KOG0339|consensus
Probab=98.18 E-value=9.7e-06 Score=83.09 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=49.9
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
.+.|..||+.+.+.+..+++.....+..-|.+||++|--.+|||+++-||+.-..
T Consensus 492 ~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~a 546 (731)
T KOG0339|consen 492 GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFA 546 (731)
T ss_pred cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeeccccc
Confidence 3889999999999999999998888888999999999999999999999985543
No 63
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.12 E-value=3.7e-07 Score=78.17 Aligned_cols=83 Identities=49% Similarity=1.020 Sum_probs=70.1
Q ss_pred CchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhc
Q psy12726 351 KNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFA 430 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~ 430 (558)
.+...+++.+++|+..+.+..++...|.+......+++||+|.+++..|+|++|++++.+.+.|+..+..++++|++.|.
T Consensus 32 ~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 32 DQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp THCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred ccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccccccccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 45578889999999999999888888999988889999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy12726 431 PAF 433 (558)
Q Consensus 431 p~~ 433 (558)
|.+
T Consensus 112 ~~~ 114 (114)
T PF07717_consen 112 PHY 114 (114)
T ss_dssp TTT
T ss_pred ccC
Confidence 853
No 64
>KOG0332|consensus
Probab=98.09 E-value=5.3e-05 Score=75.13 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=48.4
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
..|-.|||.|..++..++.+....|.-||.++|||.-.+|.++-|..||+.-
T Consensus 355 h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNyd 406 (477)
T KOG0332|consen 355 HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYD 406 (477)
T ss_pred ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecC
Confidence 6788899999999999999988899999999999999999999999999854
No 65
>PRK09401 reverse gyrase; Reviewed
Probab=98.02 E-value=1.9e-05 Score=92.61 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=41.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEe----eccccceeeeCC-eEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIla----TNIAETSiTIpd-V~~VID~g~~~ 546 (558)
+.+..+||.+ .. .++....|.-+|+|| ||+|.-+|-||+ |+|||..|.-+
T Consensus 356 i~v~~~hg~l--~~---~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 356 INAELAISGF--ER---KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CcEEEEeCcH--HH---HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 7889999999 22 235455688899999 799999999999 89999998654
No 66
>KOG0345|consensus
Probab=97.97 E-value=3.3e-05 Score=78.74 Aligned_cols=53 Identities=25% Similarity=0.294 Sum_probs=44.8
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
...++++||.+......++|....+...-|.++|+||-.+|.||||-|||-.-
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~D 333 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFD 333 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecC
Confidence 36799999999998877777655555667999999999999999999999643
No 67
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.0011 Score=65.41 Aligned_cols=148 Identities=17% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHhHhcCccee----cCCCchHH---HHHHHHcCCcceeEeeCCCC--C-ce----eeeCCeEEEEecCCCCC
Q psy12726 109 DVRKQLLGIMDRHKLDVV----SAGKNTVR---VQKAVCSGFFRNAAKKDPQE--G-YR----TLVDSQVVYIHPSSALF 174 (558)
Q Consensus 109 ~~r~qL~~~l~~~~~~~~----gsgkst~i---~~~lL~~g~~~~~A~~r~~~--~-~~----~~~~~~v~~ihp~s~l~ 174 (558)
....++++.+++..-.++ |+||+.-+ +..++..|..-.+|.-|+.- + |. ...+-.+.-+|..|.-+
T Consensus 104 ~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~ 183 (441)
T COG4098 104 KASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY 183 (441)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh
Confidence 456778888777665544 99998643 66778788766666444321 1 10 01223345555544432
Q ss_pred CCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCchhhhHHHhhcCC
Q psy12726 175 NRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRP 254 (558)
Q Consensus 175 ~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~ 254 (558)
-. .+++| +|+..++|- -..+..+|+||+.-=-...|-.|-..-+- .+++
T Consensus 184 fr-~plvV-----aTtHQLlrF------------------------k~aFD~liIDEVDAFP~~~d~~L~~Av~~-ark~ 232 (441)
T COG4098 184 FR-APLVV-----ATTHQLLRF------------------------KQAFDLLIIDEVDAFPFSDDQSLQYAVKK-ARKK 232 (441)
T ss_pred cc-ccEEE-----EehHHHHHH------------------------HhhccEEEEeccccccccCCHHHHHHHHH-hhcc
Confidence 12 34443 466656655 45668899999988887778766543111 1344
Q ss_pred CeeEEEEecccchHHHhhhc-CCCCEEEecCCCC
Q psy12726 255 EIKLIVTSATLDAVKFSSYF-FEAPIFTIPGRTF 287 (558)
Q Consensus 255 ~lKlIlMSATl~~~~F~~yF-~~~pvi~Ipgr~f 287 (558)
.=-.|.||||-.-++-.+-- ++--.+.+|.|-|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH 266 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILKLPARFH 266 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEeecchhhc
Confidence 55689999998877777754 3455688886653
No 68
>KOG0335|consensus
Probab=97.96 E-value=3.4e-05 Score=80.00 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=48.4
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
.+...++||..+..+|.++......|.-.|.||||||.-+|-||+|++||.-
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 4788999999999999999888888999999999999999999999999973
No 69
>KOG0340|consensus
Probab=97.93 E-value=0.0001 Score=72.80 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=49.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..|||.+++.+...++.....+.-+|++||+||-.++.||-|-.||+--.
T Consensus 279 ~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~di 331 (442)
T KOG0340|consen 279 VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDI 331 (442)
T ss_pred eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCC
Confidence 88999999999999998888888889999999999999999999999998643
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.79 E-value=8.1e-05 Score=87.55 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=42.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEe----eccccceeeeCC-eEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIla----TNIAETSiTIpd-V~~VID~g~~ 545 (558)
+.+..+||.++. ++++...+|...|+|| ||+|.-+|-||+ |+|||..|.=
T Consensus 354 ~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 354 VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 788999999973 3555556699999999 599999999999 8999998854
No 71
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.78 E-value=1.8e-05 Score=62.61 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=49.9
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
.+.+..+||.++++++.+++....+|..+|+++|+++++++++|++..||..+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC
Confidence 478999999999999999988888888899999999999999999999999885
No 72
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.00017 Score=77.88 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=42.1
Q ss_pred ceEEEeccCCCChHHH--HhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 491 ELIILPVYSALPSEMQ--TRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q--~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
...|..+|+..+..+- .++++...+|.-.|+|+|.+++-++++|+|..|+
T Consensus 284 ~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~ 335 (505)
T TIGR00595 284 GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVG 335 (505)
T ss_pred CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEE
Confidence 4789999999876543 5677777778899999999999999999999884
No 73
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00033 Score=72.60 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=40.4
Q ss_pred CCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 499 SALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 499 s~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
.+|++.+|+.+.+....|+-.|.|||-|||=+|-||+|-+||=
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif 449 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF 449 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE
Confidence 3699999999999999999999999999999999999999993
No 74
>KOG0328|consensus
Probab=97.66 E-value=0.00035 Score=66.93 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=54.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+.|-.+||.|+.+|..++......|.-+|.++|+|=-.+|.+|.|..||+--+--.|+.-.||
T Consensus 291 ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHR 353 (400)
T KOG0328|consen 291 FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 353 (400)
T ss_pred ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhh
Confidence 789999999999999999988888999999999999999999999999996655555554444
No 75
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.65 E-value=1.7e-05 Score=62.58 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=50.5
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
.+.+..+||.++.+++.++++....|..+|++||++++.+|.+|++..||..+..
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPP 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSE
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccC
Confidence 4789999999999999999988778888999999999999999999999998853
No 76
>KOG0338|consensus
Probab=97.60 E-value=0.00016 Score=74.48 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=52.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
+.+--|||+|++.+...+.....++..-|.+||++|-.+|-|++|..||+.-.-+..+...||
T Consensus 451 l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HR 513 (691)
T KOG0338|consen 451 LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHR 513 (691)
T ss_pred chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHH
Confidence 556679999999888888888888889999999999999999999999997655544443443
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.59 E-value=0.0007 Score=73.47 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=43.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEee-ccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIAT-NIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaT-NIAETSiTIpdV~~VID 541 (558)
..+..+||.++.++..++.+....|...|+||| +++.+++.||+|..||-
T Consensus 369 ~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl 419 (501)
T PHA02558 369 DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF 419 (501)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE
Confidence 568899999999888877776667888899998 99999999999999994
No 78
>PRK14701 reverse gyrase; Provisional
Probab=97.59 E-value=0.00042 Score=83.73 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=41.7
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEee----ccccceeeeCC-eEEEEcCChhh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIAT----NIAETSLTIDG-IFYVVDPFDIE 546 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaT----NIAETSiTIpd-V~~VID~g~~~ 546 (558)
.+.+.++||. ..++++....|.-.|.||| ++|--+|-||+ |+|||.-|.=|
T Consensus 357 Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk 412 (1638)
T PRK14701 357 GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPK 412 (1638)
T ss_pred CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCC
Confidence 3889999995 3344455556889999999 69999999999 99999998655
No 79
>KOG0347|consensus
Probab=97.49 E-value=0.00016 Score=75.11 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=41.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
+..+|||++|.+....+-+....+..--|.|||+||-.+|-||+|.+||--
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEe
Confidence 557899999988877765444444445689999999999999999999973
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.43 E-value=0.00087 Score=73.51 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=44.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeC---CeE-----EEEcCChhhHHhhccccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTID---GIF-----YVVDPFDIEVRQAKYHRC 555 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIp---dV~-----~VID~g~~~~~~~~~~~~ 555 (558)
+.+..|||..+..+..-+-... +...|.||||+|=-++-|+ +|. +||.+..-..+....||+
T Consensus 498 i~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~ 567 (656)
T PRK12898 498 LPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLA 567 (656)
T ss_pred CCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhc
Confidence 6788899987655544333222 2346999999999999999 887 999988665555544543
No 81
>PRK13766 Hef nuclease; Provisional
Probab=97.41 E-value=0.0013 Score=75.46 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=44.6
Q ss_pred eEEEeccCC--------CChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSA--------LPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~--------l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||. ++..+|.+++.....|..+|++||++++.++.||++.+||...
T Consensus 390 ~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd 449 (773)
T PRK13766 390 IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYE 449 (773)
T ss_pred CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeC
Confidence 445667665 8889999888877788899999999999999999999999754
No 82
>KOG0326|consensus
Probab=97.27 E-value=0.0006 Score=66.44 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=54.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
|-.+-.|+.|.++...+||-..-.|.-+..|+|+.--.+|.|+.|-+||++---|.-+...||
T Consensus 347 yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHR 409 (459)
T KOG0326|consen 347 YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHR 409 (459)
T ss_pred chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHH
Confidence 667778999999999999999999999999999999999999999999998755554444443
No 83
>KOG0342|consensus
Probab=97.23 E-value=0.0014 Score=67.57 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=51.2
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHH
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVR 548 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~ 548 (558)
.+.|+-+||.+++.....+|.......+=|.|+||||-.++-||||..||--|.-..+
T Consensus 354 dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~ 411 (543)
T KOG0342|consen 354 DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDP 411 (543)
T ss_pred CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCH
Confidence 3779999999999999999998888888999999999999999999999987744333
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.22 E-value=0.0024 Score=71.74 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=42.6
Q ss_pred ceEEEeccCCCCh--HHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 491 ELIILPVYSALPS--EMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 491 ~~~vlpLhs~l~~--~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
...|+.+|+.+.. ++..++++...+|.-.|+|+|++++-++.+|+|..|+
T Consensus 452 ~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~ 503 (679)
T PRK05580 452 EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVG 503 (679)
T ss_pred CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEE
Confidence 3679999999874 4566777777788899999999999999999999994
No 85
>KOG0343|consensus
Probab=97.15 E-value=0.002 Score=67.31 Aligned_cols=51 Identities=12% Similarity=0.289 Sum_probs=45.1
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
+.-++.|||.+++.....+|...-...--|..||+||-.++..|-|-+||-
T Consensus 339 g~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 339 GIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred CCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE
Confidence 467999999999999999998776666678999999999999999999974
No 86
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.08 E-value=0.0067 Score=68.02 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=64.9
Q ss_pred ccccccceecccccccc--cCCCchhhhHHHhhcCCCeeEEEEecccch-HHHhhhcCC----CCEEEecCC-CCcceee
Q psy12726 221 LSKFKKNQRLEPLQRTN--RISFPPGLLKQAVKKRPEIKLIVTSATLDA-VKFSSYFFE----APIFTIPGR-TFPVEVL 292 (558)
Q Consensus 221 l~~~~~vi~De~her~~--~~D~ll~~lk~~l~~r~~lKlIlMSATl~~-~~F~~yF~~----~pvi~Ipgr-~fpV~~~ 292 (558)
|.....||+||.|+-.- ..-.|-..|.++...-+++.-|..|||... +.-++|+++ |.++.+++. .+.+++.
T Consensus 147 l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~ 226 (814)
T COG1201 147 LRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVI 226 (814)
T ss_pred hcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEE
Confidence 78889999999998642 122222223334434458999999999954 666777653 567777754 4667776
Q ss_pred ccCCCCcc---hHHHHHHHHHHHHhcCCCCCEEEEecChH
Q psy12726 293 YTKEPETD---YLDASLITVMQIHLREPPGDVLLFLTGKL 329 (558)
Q Consensus 293 yl~~~~~d---~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ 329 (558)
.......+ -...++..+..+-... ...|||.....
T Consensus 227 ~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~ 264 (814)
T COG1201 227 SPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRS 264 (814)
T ss_pred ecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChH
Confidence 65543221 1233445555444443 36788876554
No 87
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.07 E-value=0.0042 Score=70.44 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=36.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh--cCCCeeEEEEecccch---HHHhhhcC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK--KRPEIKLIVTSATLDA---VKFSSYFF 275 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~--~r~~lKlIlMSATl~~---~~F~~yF~ 275 (558)
.-..+.+|+||+|-=.-++ .+..++ .++. ..-+.++||||||+.. +.|.++++
T Consensus 336 ~l~~S~vIlDE~h~~~~~~-~~~~l~-~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~ 393 (733)
T COG1203 336 LLLTSLVILDEVHLYADET-MLAALL-ALLEALAEAGVPVLLMSATLPPFLKEKLKKALG 393 (733)
T ss_pred HHHhhchhhccHHhhcccc-hHHHHH-HHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 3567899999999887776 333333 3333 4458899999999987 44455554
No 88
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.06 E-value=6e-05 Score=65.88 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=30.8
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEeccc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATL 265 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl 265 (558)
..+|+.||+||.|.-+-.+=...|.+++.-. -...|+|.||||-
T Consensus 93 ~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATP 136 (148)
T PF07652_consen 93 LKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATP 136 (148)
T ss_dssp TTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-
T ss_pred ccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCC
Confidence 7899999999999977666556666766643 3568999999996
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.03 E-value=0.0035 Score=71.65 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEE
Q psy12726 470 EIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYV 539 (558)
Q Consensus 470 ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~V 539 (558)
+|++..+.|.+.. +...|-..||+|+..+..+++.....|.=-|.|||-|-||+|-||++--.
T Consensus 815 ~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 815 SIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred hHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceE
Confidence 3444445555443 45889999999999999999999899999999999999999999998543
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.02 E-value=0.0044 Score=69.65 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=46.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeee---CCeE-----EEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTI---DGIF-----YVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTI---pdV~-----~VID~g~~~~~~~~~~~ 554 (558)
+.+..||+.++..+...+.....+| .|.||||+|=-++-| |+|. +||.+.+-..+...-||
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr 521 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQL 521 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHh
Confidence 6678899998877766665554444 799999999999999 7999 99998865544444444
No 91
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.98 E-value=0.0028 Score=54.92 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=47.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
..+.++|++++..+...++....+|..+|+++|+.++.++.+|++..||-.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~ 105 (131)
T cd00079 53 IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL 105 (131)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC
Confidence 56899999999999888888777888999999999999999999999886553
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.92 E-value=0.0053 Score=66.41 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=46.5
Q ss_pred CceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 490 PELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 490 ~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
++++|--+||.|+++|...|.+...+|+-.|.|||.|-|-+|-+||-+.-|
T Consensus 506 ~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 506 PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 458899999999999999998888889999999999999999999988755
No 93
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=96.84 E-value=0.0069 Score=63.80 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=57.1
Q ss_pred ccccccceecccc-----cccccCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcCCCCEEEecCCCCcceee
Q psy12726 221 LSKFKKNQRLEPL-----QRTNRISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFFEAPIFTIPGRTFPVEVL 292 (558)
Q Consensus 221 l~~~~~vi~De~h-----er~~~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~~~pvi~Ipgr~fpV~~~ 292 (558)
+...+.|++||+| ||...-|-|++=||.+. |+-..|-.|||+ |.+..+++| ++..+.-.+|.-|.+-|
T Consensus 336 lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---~~AQ~i~LSATVgNp~elA~~l-~a~lV~y~~RPVplErH 409 (830)
T COG1202 336 LGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---PGAQFIYLSATVGNPEELAKKL-GAKLVLYDERPVPLERH 409 (830)
T ss_pred ccccceEEeeeeeeccchhcccchhhHHHHHHHhC---CCCeEEEEEeecCChHHHHHHh-CCeeEeecCCCCChhHe
Confidence 7889999999999 77778887777777665 788999999999 678899999 46677778999998766
No 94
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.82 E-value=0.0074 Score=67.18 Aligned_cols=46 Identities=9% Similarity=0.244 Sum_probs=40.7
Q ss_pred eccCCCChHHHHhhcccCCCC-CeEEEEeeccccceeeeCCeEEEEc
Q psy12726 496 PVYSALPSEMQTRIFEAAPPG-SRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 496 pLhs~l~~~~Q~~vf~~~~~g-~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
.+||.++..+..++|+....| ..+++++|+||.++|.||++.+||-
T Consensus 520 ~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~ 566 (732)
T TIGR00603 520 FIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ 566 (732)
T ss_pred eEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE
Confidence 379999999999998877654 5689999999999999999999984
No 95
>KOG0348|consensus
Probab=96.76 E-value=0.00099 Score=69.26 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=48.9
Q ss_pred CceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 490 PELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 490 ~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
.+++++.|||+|.+++...+|+......+-|.|||+||-.+|.+|+|+.||-
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ 521 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ 521 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE
Confidence 4578999999999999999999988888999999999999999999999994
No 96
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.017 Score=62.56 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=50.4
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQA 550 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~ 550 (558)
.+.+.+.|+.|+.++...+.+..-.+..+||||||-===+|--|||+|||-.+.-+.-+.
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~Es 313 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIES 313 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHH
Confidence 378999999999999887777767788999999999999999999999998765444333
No 97
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.68 E-value=0.013 Score=65.31 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=43.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeC---------CeEEEEcCChhhHHh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTID---------GIFYVVDPFDIEVRQ 549 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIp---------dV~~VID~g~~~~~~ 549 (558)
+....||+.+...+...++....+| +|.+|||+|=-++-|| +|.+||..-....|.
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 5567789999988877776655455 7999999999999999 999998754444343
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.37 E-value=0.014 Score=66.96 Aligned_cols=61 Identities=23% Similarity=0.105 Sum_probs=49.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKY 552 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~ 552 (558)
..|..-|+.++..+-+++-.....|.-++++|||-.|-.|-|=++..||-.|.--+....+
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~ 399 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSF 399 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHH
Confidence 4467778999999888777777779999999999999999999999999988554333333
No 99
>KOG0341|consensus
Probab=96.34 E-value=0.0079 Score=60.30 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=47.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.....||+-.+++...+......|+.-|.|||+||--++..|||-+||+.-.
T Consensus 446 VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM 498 (610)
T KOG0341|consen 446 VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM 498 (610)
T ss_pred ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC
Confidence 77899999999998887777667799999999999999999999999998643
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=96.30 E-value=0.021 Score=63.93 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=41.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeee---CCeE-----EEEcCChhhHHh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTI---DGIF-----YVVDPFDIEVRQ 549 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTI---pdV~-----~VID~g~~~~~~ 549 (558)
+..-.||+.....|...+-....+|. |.||||+|=-++-| ++|. +||.+.+...+.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~r 528 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRR 528 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHH
Confidence 34557888887666655555444454 99999999999999 5999 999988654443
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.28 E-value=0.075 Score=60.19 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=65.7
Q ss_pred ccccccceeccccccccc--CCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcCCCCEEEecCCCCcc--------
Q psy12726 221 LSKFKKNQRLEPLQRTNR--ISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFFEAPIFTIPGRTFPV-------- 289 (558)
Q Consensus 221 l~~~~~vi~De~her~~~--~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~~~pvi~Ipgr~fpV-------- 289 (558)
+...+.+++||+|-=+=. .=.+-.++.+.....+..|+|-.|||+ +++.|+++.+.-++ . +.-+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~--~~~rp~~l~~~v~~ 220 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-E--SDWRPVPLRRGVPY 220 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-c--cCCCCcccccCCcc
Confidence 667899999999965422 123444555666666779999999999 78999998865443 1 112222
Q ss_pred -eeeccCC-C----CcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 290 -EVLYTKE-P----ETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 290 -~~~yl~~-~----~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
..++..+ . +...-..+...+...+. ..|.+|||++...+-..
T Consensus 221 ~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 221 VGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEK 268 (766)
T ss_pred ceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHH
Confidence 2222221 1 11223344444544333 45789999998875543
No 102
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.02 E-value=0.039 Score=61.34 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=41.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCC--e-----EEEEcCChhhHHhhccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDG--I-----FYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpd--V-----~~VID~g~~~~~~~~~~ 553 (558)
+..-.||+. ..++...+.....+.-.|.+|||+|=-++-|+. | -|||.+.+...+...-|
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q 496 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQ 496 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHH
Confidence 445567887 444444444444566789999999999999999 4 49999886655544333
No 103
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.46 E-value=0.28 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.016 Sum_probs=32.5
Q ss_pred cccceecccccccccCCCchhhhHHHhh--cCCCeeEEEEecccchHH
Q psy12726 224 FKKNQRLEPLQRTNRISFPPGLLKQAVK--KRPEIKLIVTSATLDAVK 269 (558)
Q Consensus 224 ~~~vi~De~her~~~~D~ll~~lk~~l~--~r~~lKlIlMSATl~~~~ 269 (558)
.+++|+||+|-=+..+ +++|..++. ..-.-+||||||||-...
T Consensus 594 ~svlVlDEVHaYD~~~---~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 594 SSDLILDEPDDYEPED---LPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred CCCEEEECCccCCHHH---HHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 5889999999876654 455556665 556789999999997743
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.46 E-value=0.081 Score=59.95 Aligned_cols=106 Identities=19% Similarity=0.074 Sum_probs=62.1
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|-+..=-+-.=|-+.+....+ -||--|+.|... +.|.+.+ +-
T Consensus 324 ~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY-~l 402 (896)
T PRK13104 324 KDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIY-NL 402 (896)
T ss_pred ECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHh-CC
Confidence 4557899999999976543333333444443322 467777777743 4455544 57
Q ss_pred CEEEecCCCCcceeeccC----CCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHH
Q psy12726 278 PIFTIPGRTFPVEVLYTK----EPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDV 331 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~----~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei 331 (558)
+|+.||... |+.-.=.+ .+..+...+....+.+.|..- .-+|||....+..
T Consensus 403 ~Vv~IPtnk-p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g--~PVLVgt~Sie~s 457 (896)
T PRK13104 403 EVVVIPTNR-SMIRKDEADLVYLTQADKFQAIIEDVRECGVRK--QPVLVGTVSIEAS 457 (896)
T ss_pred CEEECCCCC-CcceecCCCeEEcCHHHHHHHHHHHHHHHHhCC--CCEEEEeCcHHHH
Confidence 899999743 44222111 123445556666676666654 3478887766554
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.48 E-value=0.27 Score=55.81 Aligned_cols=106 Identities=17% Similarity=0.050 Sum_probs=61.3
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++|+||...|-+..=-+-.=|-+.+....+ -||--|+.|... +.|.+.+ +-
T Consensus 329 ~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY-~l 407 (908)
T PRK13107 329 QDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIY-GL 407 (908)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHh-CC
Confidence 3456889999999976443332233444443322 367778777754 3355544 57
Q ss_pred CEEEecCCCCcceeeccC----CCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHH
Q psy12726 278 PIFTIPGRTFPVEVLYTK----EPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDV 331 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~----~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei 331 (558)
+|+.||... |+.-.-.+ .+......+.+..+..+|..- .-+|||.......
T Consensus 408 ~Vv~IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~G--rpVLV~t~sv~~s 462 (908)
T PRK13107 408 DTVVVPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRERG--QPVLVGTVSIEQS 462 (908)
T ss_pred CEEECCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcC--CCEEEEeCcHHHH
Confidence 899999653 33221111 122344556677777777654 3488887766544
No 106
>KOG0346|consensus
Probab=94.28 E-value=0.14 Score=52.69 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=64.6
Q ss_pred ccccccceecccccccccCCCchhh-----hHHHhhcCC-CeeEEEEecccc--hHHHhhhcCCCC-EEEecCCCCc---
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGL-----LKQAVKKRP-EIKLIVTSATLD--AVKFSSYFFEAP-IFTIPGRTFP--- 288 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~-----lk~~l~~r~-~lKlIlMSATl~--~~~F~~yF~~~p-vi~Ipgr~fp--- 288 (558)
+...+.+++||+ |++|.+ +|.+...-| ...-.|||||+. .....+.|-.-| ++......-|
T Consensus 168 ~~~l~~LVvDEA-------DLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~d 240 (569)
T KOG0346|consen 168 LDSLSFLVVDEA-------DLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPD 240 (569)
T ss_pred hhheeeEEechh-------hhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcc
Confidence 667788899997 666554 455554333 467899999994 466777765444 5555544444
Q ss_pred -ceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHH
Q psy12726 289 -VEVLYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQ 334 (558)
Q Consensus 289 -V~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~ 334 (558)
++.|+..-.+.|-.--.+ .+ ...+.-.|.+|+|+...+..++.
T Consensus 241 qL~Qy~v~cse~DKfllly-al--lKL~LI~gKsliFVNtIdr~YrL 284 (569)
T KOG0346|consen 241 QLTQYQVKCSEEDKFLLLY-AL--LKLRLIRGKSLIFVNTIDRCYRL 284 (569)
T ss_pred cceEEEEEeccchhHHHHH-HH--HHHHHhcCceEEEEechhhhHHH
Confidence 556666655555432221 11 12344579999999877666553
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=94.18 E-value=0.71 Score=54.79 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=34.9
Q ss_pred EEEeccCCCChHH-HHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 493 IILPVYSALPSEM-QTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 493 ~vlpLhs~l~~~~-Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
.+..+||..+..+ -.+-|+.. ...+|++++++.-|++-+|+|..||=.
T Consensus 733 ~v~~itg~~~~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP~v~~vVf~ 781 (1123)
T PRK11448 733 AVIKITGSIDKPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVPSICNLVFL 781 (1123)
T ss_pred ceEEEeCCccchHHHHHHHhCC--CCCeEEEEecccccCCCcccccEEEEe
Confidence 4556788876433 23556542 124899999999999999999999854
No 108
>KOG0334|consensus
Probab=94.15 E-value=0.22 Score=56.45 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=43.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
+....||+..+..+..........|+-++.++|.+|--++-+.++-.||+
T Consensus 638 ~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn 687 (997)
T KOG0334|consen 638 YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN 687 (997)
T ss_pred cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE
Confidence 44555999999988888877777788999999999999999999999987
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=94.07 E-value=0.021 Score=51.93 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=30.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHh---hcCCCeeEEEEecccc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAV---KKRPEIKLIVTSATLD 266 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l---~~r~~lKlIlMSATl~ 266 (558)
+...+.+++||+|.-.-. ++. ..++.++ ...++.++|+||||+.
T Consensus 117 ~~~~~~iViDE~h~l~~~-~~~-~~~~~i~~~~~~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 117 ISRLSLIVIDEAHHLSDE-TFR-AMLKSILRRLKRFKNIQIILLSATLP 163 (169)
T ss_dssp GTTESEEEEETHHHHHHT-THH-HHHHHHHHHSHTTTTSEEEEEESSST
T ss_pred cccceeeccCcccccccc-cHH-HHHHHHHHHhcCCCCCcEEEEeeCCC
Confidence 455899999999998874 211 1233333 3345799999999998
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.95 E-value=0.2 Score=57.21 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=36.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeC---CeE-----EEEcCChhhHHh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTID---GIF-----YVVDPFDIEVRQ 549 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIp---dV~-----~VID~g~~~~~~ 549 (558)
+..-.||+. ..++.........+.-.|.||||+|=-++-|+ +|. +||.+.+...+.
T Consensus 623 I~h~vLnak--q~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~R 686 (1025)
T PRK12900 623 IAHNVLNAK--QHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRR 686 (1025)
T ss_pred CCceeecCC--HHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHH
Confidence 334456753 33444444433445668999999999999999 674 458888755443
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.69 E-value=0.082 Score=58.99 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=47.3
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||.++..+..++++...+|.-.|+||||+++.++.+|+|.+||-+.
T Consensus 467 i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 467 IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeC
Confidence 6788899999999999999888889999999999999999999999988654
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=93.63 E-value=0.39 Score=54.43 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=60.3
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|-+..=-+-.=|-+.+...-+ .||--|+.|+.. +.|.+.+ +.
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l 388 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY-NL 388 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh-CC
Confidence 3447889999999866433222223444432211 377888888854 4455544 68
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHH
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGKLDV 331 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei 331 (558)
+|+.||... |+.-.=.++ +..+...+....+...|.. ...+|||....++.
T Consensus 389 ~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~--grpVLIft~Si~~s 443 (830)
T PRK12904 389 DVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKK--GQPVLVGTVSIEKS 443 (830)
T ss_pred CEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhc--CCCEEEEeCcHHHH
Confidence 899999754 554332221 2234444445555554543 34588888766554
No 113
>KOG0337|consensus
Probab=93.23 E-value=0.9 Score=46.68 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=36.6
Q ss_pred ccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 497 VYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 497 Lhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
.||+|.+...+.-+.....+.--+.+.|++|--++-||...-||+
T Consensus 291 iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 291 IYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred cccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 577887777665666665666789999999999999999998886
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=92.16 E-value=0.18 Score=56.46 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=48.6
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
.+.+..+||.++..++.+++....+|.-.|+|||++++.++.+|+|.+||-+..
T Consensus 470 gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ 523 (652)
T PRK05298 470 GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDA 523 (652)
T ss_pred ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCC
Confidence 378889999999999999888888899999999999999999999999987653
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=91.91 E-value=0.11 Score=44.78 Aligned_cols=44 Identities=25% Similarity=0.067 Sum_probs=29.8
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEeccc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATL 265 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl 265 (558)
......+++||+|.=.-..-.... .+......+..++++||||+
T Consensus 101 ~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 101 LKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 456788999999987655422222 22334456778899999995
No 116
>KOG0951|consensus
Probab=91.78 E-value=1.3 Score=51.61 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=64.0
Q ss_pred cccccccceecccccccccCCCchhhh-----HHHhhcCCCeeEEEEeccc----chHHHhhhcCCCCEEEecC---CCC
Q psy12726 220 KLSKFKKNQRLEPLQRTNRISFPPGLL-----KQAVKKRPEIKLIVTSATL----DAVKFSSYFFEAPIFTIPG---RTF 287 (558)
Q Consensus 220 ~l~~~~~vi~De~her~~~~D~ll~~l-----k~~l~~r~~lKlIlMSATl----~~~~F~~yF~~~pvi~Ipg---r~f 287 (558)
..+.++-+|+||.|--.=+-...+.-+ |+.-......|+|-.|||| |+..|-.-+. +-+..-+ |.-
T Consensus 434 Y~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~syRpv 511 (1674)
T KOG0951|consen 434 YEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSSYRPV 511 (1674)
T ss_pred HHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc--ccccccCcccCcC
Confidence 356778899999986644444444211 2222233479999999999 4455544221 2222222 344
Q ss_pred cceeeccCCCCcc-------hHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 288 PVEVLYTKEPETD-------YLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 288 pV~~~yl~~~~~d-------~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
|.+..|..-++.+ .-++.+.++++ |.. .+.+|||+....|--+
T Consensus 512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~-~ag--k~qVLVFVHsRkET~k 561 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLE-HAG--KNQVLVFVHSRKETAK 561 (1674)
T ss_pred CccceEeccccCCchHHHHHHHHHHHHHHHH-hCC--CCcEEEEEEechHHHH
Confidence 6666676544322 23456777776 333 3889999998876544
No 117
>KOG4284|consensus
Probab=91.31 E-value=1.2 Score=48.33 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=43.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
+-+.-.-|.|.+++...+|..-..-..+|.|||+.--.+|.-|+|-.||+.
T Consensus 297 ~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 297 LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEec
Confidence 556667789999998888887666667999999999999999999999984
No 118
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=91.05 E-value=0.21 Score=46.03 Aligned_cols=52 Identities=19% Similarity=0.071 Sum_probs=34.3
Q ss_pred ccccccceecccccccc--cCCCchhhhHHHhhcCCCeeEEEEeccc--chHHHh-hhcC
Q psy12726 221 LSKFKKNQRLEPLQRTN--RISFPPGLLKQAVKKRPEIKLIVTSATL--DAVKFS-SYFF 275 (558)
Q Consensus 221 l~~~~~vi~De~her~~--~~D~ll~~lk~~l~~r~~lKlIlMSATl--~~~~F~-~yF~ 275 (558)
...+..+++||+|.-.- ..+.+..+++.+ .+..++|+||||. +.+.+. .|+.
T Consensus 127 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 127 LSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---CccceEEEEecCCchhHHHHHHHhcC
Confidence 55778999999999884 223332232222 4678999999999 455554 4554
No 119
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=90.92 E-value=0.26 Score=56.76 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=54.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh--cCCCeeEEEEeccc-chHHHhhhcC-----CCCEEEecCCCCcceee
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK--KRPEIKLIVTSATL-DAVKFSSYFF-----EAPIFTIPGRTFPVEVL 292 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~--~r~~lKlIlMSATl-~~~~F~~yF~-----~~pvi~Ipgr~fpV~~~ 292 (558)
+.....|++||+|.=. |--=|.+.+.+- .-.++++|.+|||+ |++.|+++++ +|-+|..+-|.-|.+.|
T Consensus 227 ~~~i~~ViFDEvHyi~---D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~ 303 (1041)
T COG4581 227 LRDIEWVVFDEVHYIG---DRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHF 303 (1041)
T ss_pred ccccceEEEEeeeecc---ccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEE
Confidence 7788999999999643 333344444332 23458999999999 7899999986 46688888999999888
Q ss_pred ccCC
Q psy12726 293 YTKE 296 (558)
Q Consensus 293 yl~~ 296 (558)
|...
T Consensus 304 ~~~~ 307 (1041)
T COG4581 304 VYVG 307 (1041)
T ss_pred EecC
Confidence 7553
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.39 E-value=3.6 Score=47.86 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=23.7
Q ss_pred HHHHhhcccCCCCCeEEEEeeccccceeeeCCeEE
Q psy12726 504 EMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFY 538 (558)
Q Consensus 504 ~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~ 538 (558)
.+-.+-|+. |...|+++|+..--+|-+||...
T Consensus 715 ~~ll~~F~~---~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 715 AKIKKRFNN---GEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred HHHHHHHHh---CCCeEEEEcceeecccccCCCce
Confidence 333445554 66789999999999999998764
No 121
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=89.75 E-value=0.95 Score=52.61 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=44.3
Q ss_pred ceEEEeccCCCChHHHHhhcccCCC--CCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPP--GSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~--g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
.+.+..+||+++..+..+++..... |.-+|+|||.+|..++.++.+.+||..-
T Consensus 518 Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfD 572 (956)
T PRK04914 518 GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFD 572 (956)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEec
Confidence 3788999999999988877654433 3468999999999999999999999854
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.38 E-value=0.49 Score=44.40 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=32.4
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccc--hHHHh-hhcC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLD--AVKFS-SYFF 275 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~--~~~F~-~yF~ 275 (558)
+.....+++||+|.=. +..+ ...+..+.. ..++.++++||||+. .+.+. .|+.
T Consensus 141 ~~~l~~lIvDE~h~~~-~~~~-~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 141 LSKVKYLVLDEADRML-DMGF-EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred hhhCCEEEEeChHHhh-ccCh-HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 5677899999999743 2222 122223333 234789999999997 34443 3444
No 123
>KOG0354|consensus
Probab=88.48 E-value=0.29 Score=54.20 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 499 SALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 499 s~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
.+++..+|+.+.+...+|.-+|+|||-|||=+|-|+.|-.||=
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC 498 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE
Confidence 3789999999999999999999999999999999999999995
No 124
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=87.44 E-value=6.1 Score=42.18 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
+-.+.+..+..|...+++....|..++++++-|...++-||++..+|=
T Consensus 309 ~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~ 356 (442)
T COG1061 309 VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII 356 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE
Confidence 556788999999999988888888999999999999999999988874
No 125
>KOG0947|consensus
Probab=86.05 E-value=0.66 Score=52.32 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=46.8
Q ss_pred ccccccceecccccc-----cccCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcCC-----CCEEEecCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQR-----TNRISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFFE-----APIFTIPGRTFPV 289 (558)
Q Consensus 221 l~~~~~vi~De~her-----~~~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~~-----~pvi~Ipgr~fpV 289 (558)
+.....||+||+|.= .+=+.=.+.+ .-+++++|+.|||+ +...|+.+-|- --||.-+-|.-|.
T Consensus 401 iRDvE~VIFDEVHYiND~eRGvVWEEViIM------lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPL 474 (1248)
T KOG0947|consen 401 IRDVEFVIFDEVHYINDVERGVVWEEVIIM------LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPL 474 (1248)
T ss_pred hhccceEEEeeeeecccccccccceeeeee------ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccce
Confidence 667788999999954 3333333333 33579999999999 67889999873 2345556677777
Q ss_pred eeec
Q psy12726 290 EVLY 293 (558)
Q Consensus 290 ~~~y 293 (558)
+.|+
T Consensus 475 Eh~l 478 (1248)
T KOG0947|consen 475 EHYL 478 (1248)
T ss_pred EEEE
Confidence 7664
No 126
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.45 E-value=2.6 Score=47.93 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=51.2
Q ss_pred HHHhhcCCCeeEEEEecccch-HHHhhhcCC-CCEEEecCCCCc---cee--------------eccCCCCcchHHHHHH
Q psy12726 247 KQAVKKRPEIKLIVTSATLDA-VKFSSYFFE-APIFTIPGRTFP---VEV--------------LYTKEPETDYLDASLI 307 (558)
Q Consensus 247 k~~l~~r~~lKlIlMSATl~~-~~F~~yF~~-~pvi~Ipgr~fp---V~~--------------~yl~~~~~d~~~~~~~ 307 (558)
+.+..+ --.+|+|||||.. +.|.+.+|- .++...++..+| +.+ -|-.....+|+.....
T Consensus 435 ~~i~~~--~~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~ 512 (705)
T TIGR00604 435 KPLFER--VRSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGE 512 (705)
T ss_pred HHHHHh--cCEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHH
Confidence 444432 2369999999985 667776763 222222222233 111 2222222457777777
Q ss_pred HHHHHHhcCCCCCEEEEecChHHHHHHHH
Q psy12726 308 TVMQIHLREPPGDVLLFLTGKLDVRKQLL 336 (558)
Q Consensus 308 ~~~~i~~~~~~g~iLvfl~g~~ei~~~~~ 336 (558)
.+.++...- ||.+|||.|+..-+++...
T Consensus 513 ~i~~~~~~~-pgg~lvfFpSy~~l~~v~~ 540 (705)
T TIGR00604 513 LLVEFSKII-PDGIVVFFPSYSYLENIVS 540 (705)
T ss_pred HHHHHhhcC-CCcEEEEccCHHHHHHHHH
Confidence 777765554 6899999999977665443
No 127
>KOG0349|consensus
Probab=85.07 E-value=0.96 Score=46.50 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred CceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhh
Q psy12726 490 PELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQA 550 (558)
Q Consensus 490 ~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~ 550 (558)
..|-.+.||+..-+.|.+.-.+...++..|..++|+||-.+|.|-++-|||+.-+--.|+.
T Consensus 531 ~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~n 591 (725)
T KOG0349|consen 531 KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTN 591 (725)
T ss_pred ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccch
Confidence 4688999999999988887777777788899999999999999999999999654433433
No 128
>KOG0344|consensus
Probab=84.90 E-value=4 Score=43.82 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=43.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
+.|=..||..++.+...+......|+..|.++||+-+.+|-+-||..||+
T Consensus 413 i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 413 INVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred cceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 56777788888887777777777799999999999999999999999998
No 129
>KOG0327|consensus
Probab=83.27 E-value=9.8 Score=38.87 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=44.7
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
.+++-..|+.+...+...+.+....|.-+|.+.|..+--||-|-++-.||+.=.
T Consensus 287 ~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 287 GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 377888999988877666655556688899999999999999999999998543
No 130
>KOG0352|consensus
Probab=80.30 E-value=4.5 Score=41.81 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=38.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
+-....|++|-..|...|=..=-.|..-||.|||----++.=|||+|||-
T Consensus 280 i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH 329 (641)
T KOG0352|consen 280 IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH 329 (641)
T ss_pred cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe
Confidence 34556788887777666544434567789999999999999999999996
No 131
>KOG0351|consensus
Probab=79.03 E-value=8.6 Score=44.69 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=50.3
Q ss_pred EEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 493 IILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 493 ~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
..-.+|++|++.+...|-+.--.|.-+||+||=--==+|--||||+||-.+.-|--+-.|+-
T Consensus 511 ~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE 572 (941)
T KOG0351|consen 511 SAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQE 572 (941)
T ss_pred hhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHh
Confidence 34568999999998877665556778999999877888999999999999987776666653
No 132
>KOG0353|consensus
Probab=78.41 E-value=2.5 Score=42.74 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~~ 554 (558)
++.=..|+.|.|.+..-+.+.=-.|...|||||-----+|.=|||+|||--...|..+..|+-
T Consensus 342 i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 342 IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 455567999999998888887778999999999988999999999999998888877777763
No 133
>KOG0952|consensus
Probab=77.97 E-value=18 Score=41.85 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=65.6
Q ss_pred ccccccceecccccccccCCCchh-hhHHHh----hcCCCeeEEEEeccc-chHHHhhhcCC---CCEEEecCCCCcc--
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPG-LLKQAV----KKRPEIKLIVTSATL-DAVKFSSYFFE---APIFTIPGRTFPV-- 289 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~-~lk~~l----~~r~~lKlIlMSATl-~~~~F~~yF~~---~pvi~Ipgr~fpV-- 289 (558)
++....+++||+|--.=+-...+- ++-+.+ ..-..+|+|-.|||+ +.++.+.|++- ..+....++--||
T Consensus 236 ~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL 315 (1230)
T KOG0952|consen 236 FSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPL 315 (1230)
T ss_pred hhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccce
Confidence 566788999999965444333322 222222 234579999999999 56777777763 2345555544343
Q ss_pred eeeccCCC-------CcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHH
Q psy12726 290 EVLYTKEP-------ETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQL 335 (558)
Q Consensus 290 ~~~yl~~~-------~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~ 335 (558)
+.+|.-.. ..+.-...+.++.+.+.. .-.+|||++...+-.+..
T Consensus 316 ~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA 366 (1230)
T KOG0952|consen 316 TQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTA 366 (1230)
T ss_pred eeeEEeeecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHH
Confidence 34443221 123333345556555544 346899999887654433
No 134
>KOG0948|consensus
Probab=75.89 E-value=1.7 Score=47.93 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=47.8
Q ss_pred ccccccceeccccc-----ccccCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcC-----CCCEEEecCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQ-----RTNRISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFF-----EAPIFTIPGRTFPV 289 (558)
Q Consensus 221 l~~~~~vi~De~he-----r~~~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~-----~~pvi~Ipgr~fpV 289 (558)
..+..-||+||+|. |.+=+.-.+.+ .-++.|-|..|||+ ++-.|+++-. .|-|+.-.=|.-|.
T Consensus 233 mrEVaWVIFDEIHYMRDkERGVVWEETIIl------lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPL 306 (1041)
T KOG0948|consen 233 MREVAWVIFDEIHYMRDKERGVVWEETIIL------LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPL 306 (1041)
T ss_pred hheeeeEEeeeehhccccccceeeeeeEEe------ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcc
Confidence 56677899999984 44333322222 23568999999999 7899999642 47788888888888
Q ss_pred eee
Q psy12726 290 EVL 292 (558)
Q Consensus 290 ~~~ 292 (558)
+.|
T Consensus 307 QHy 309 (1041)
T KOG0948|consen 307 QHY 309 (1041)
T ss_pred eee
Confidence 877
No 135
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=75.88 E-value=2 Score=48.23 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=33.8
Q ss_pred ccccccceecccccc--ccc------CCCchhhhHHHhhcCCCeeEEEEecccchHH--HhhhcC
Q psy12726 221 LSKFKKNQRLEPLQR--TNR------ISFPPGLLKQAVKKRPEIKLIVTSATLDAVK--FSSYFF 275 (558)
Q Consensus 221 l~~~~~vi~De~her--~~~------~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~--F~~yF~ 275 (558)
+..|.+||+||+-.= .+. ..-.+.+|+.++..- -+||+|-||++... |-+.+.
T Consensus 140 l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~a--k~VI~~DA~ln~~tvdFl~~~R 202 (824)
T PF02399_consen 140 LDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNA--KTVIVMDADLNDQTVDFLASCR 202 (824)
T ss_pred ccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhC--CeEEEecCCCCHHHHHHHHHhC
Confidence 778999999998321 111 122345566666433 48999999999743 455553
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=75.21 E-value=1.8 Score=39.47 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=28.3
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEeccc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATL 265 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl 265 (558)
...+..+++||+|.-.-... -+.++. .+.-.+|.||||.
T Consensus 144 ~~~~~~vI~DEaH~~~~~~~-----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPSDSS-----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp GGSESEEEEETGGCTHHHHH-----HHHHHH-SSCCEEEEEESS-
T ss_pred cccCCEEEEehhhhcCCHHH-----HHHHHc-CCCCeEEEEEeCc
Confidence 45678999999998775543 234443 6777899999996
No 137
>KOG0950|consensus
Probab=73.34 E-value=29 Score=39.85 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=34.4
Q ss_pred eccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 496 PVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 496 pLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
--|++++.++..-|=.-...|.-+|++||.---.++-.|-.+|.|=
T Consensus 527 yHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir 572 (1008)
T KOG0950|consen 527 YHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR 572 (1008)
T ss_pred ecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe
Confidence 3478898888764422223488899999988778899999998886
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=71.30 E-value=45 Score=37.65 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=60.0
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccc--hHHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLD--AVKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~--~~~F~~yF~~~ 277 (558)
..-.++++||...|-+..=-+-.=|-+.+....+ -||--|+.|+. .+.|.+.| +.
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY-~l 385 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY-DL 385 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh-CC
Confidence 4557899999999955332222222333332211 37888888884 46677765 57
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHH
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGKLDV 331 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei 331 (558)
+|+.||.. .|+.-.=.++ +..+...+.+..+...|..-. -|||.....++.
T Consensus 386 ~Vv~IPtn-kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~Gr--PVLVgt~sI~~S 440 (764)
T PRK12326 386 GVSVIPPN-KPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQ--PVLVGTHDVAES 440 (764)
T ss_pred cEEECCCC-CCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCC--CEEEEeCCHHHH
Confidence 78899976 3543222121 223455566666666666443 367666555443
No 139
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=66.73 E-value=43 Score=38.05 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred eeEEEEecccchH-HHhhhc----CC-----CCEEEecCCCCcc---eeeccCC------CCcchHHHHHHHHHHHHhcC
Q psy12726 256 IKLIVTSATLDAV-KFSSYF----FE-----APIFTIPGRTFPV---EVLYTKE------PETDYLDASLITVMQIHLRE 316 (558)
Q Consensus 256 lKlIlMSATl~~~-~F~~yF----~~-----~pvi~Ipgr~fpV---~~~yl~~------~~~d~~~~~~~~~~~i~~~~ 316 (558)
-.+|+|||||... .| +|| |- ...+.+|. .||- ...|.+. ...+|.+.....+..+..
T Consensus 457 ~~vIltSATL~~~~~f-~~~~~~lGL~~~~~~~~~~~~S-pF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-- 532 (697)
T PRK11747 457 PGAVLTSATLRSLNSF-DRFQEQSGLPEKDGDRFLALPS-PFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-- 532 (697)
T ss_pred CEEEEEeeeCCCCCch-HHHHHHcCCCCCCCceEEEcCC-CCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh--
Confidence 4699999999873 45 344 31 22445543 3544 2334432 123577787888888776
Q ss_pred CCCCEEEEecChHHHHHHHHhh
Q psy12726 317 PPGDVLLFLTGKLDVRKQLLGI 338 (558)
Q Consensus 317 ~~g~iLvfl~g~~ei~~~~~~~ 338 (558)
.+|.+|||.|+.+.++.....+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l 554 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLL 554 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHH
Confidence 4566999999998776544333
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=64.62 E-value=60 Score=37.37 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=58.7
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|.+..=-+-.=|-+.+...-+ -||--|+.|... +.|.+.+ +-
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY-~l 384 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY-NM 384 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh-CC
Confidence 4557889999999976543332223444443221 467778888754 3455544 57
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecChHH
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGKLD 330 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~e 330 (558)
+|+.||... |+.-.-.++ +......+.+..+...|.. ..-|||.....++
T Consensus 385 ~Vv~IPTnk-P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~--gqPVLVgT~SIe~ 438 (925)
T PRK12903 385 RVNVVPTNK-PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK--GQPILIGTAQVED 438 (925)
T ss_pred CEEECCCCC-CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc--CCCEEEEeCcHHH
Confidence 899999753 543222221 2233445555666666643 2346766655543
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=62.94 E-value=90 Score=36.88 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=43.1
Q ss_pred eeEEEEecccchHHHhhhc----CC----CCEEEecCCCCcce---eeccCC--------CCcchHHHHHHHHHHHHhcC
Q psy12726 256 IKLIVTSATLDAVKFSSYF----FE----APIFTIPGRTFPVE---VLYTKE--------PETDYLDASLITVMQIHLRE 316 (558)
Q Consensus 256 lKlIlMSATl~~~~F~~yF----~~----~pvi~Ipgr~fpV~---~~yl~~--------~~~d~~~~~~~~~~~i~~~~ 316 (558)
-++|+|||||....--+|| |- +..+.+|.- |+-+ ..|.+. ...+|.......+.++...
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~Sp-F~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~- 750 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSP-FSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA- 750 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCC-CCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-
Confidence 4799999999874323343 31 123444432 4431 122221 1145666666666665443
Q ss_pred CCCCEEEEecChHHHHH
Q psy12726 317 PPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 317 ~~g~iLvfl~g~~ei~~ 333 (558)
.+|.+|||.|+.+.++.
T Consensus 751 ~~g~~LVLFtSy~~l~~ 767 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKK 767 (928)
T ss_pred CCCCEEEEECCHHHHHH
Confidence 46889999998876543
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=62.62 E-value=15 Score=41.47 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=47.5
Q ss_pred eeEEEEecccchH-HHhhhcCC---CCE--EEecCCCCccee---eccCC---CCc--chHHHHHHHHHHHHhcCCCCCE
Q psy12726 256 IKLIVTSATLDAV-KFSSYFFE---API--FTIPGRTFPVEV---LYTKE---PET--DYLDASLITVMQIHLREPPGDV 321 (558)
Q Consensus 256 lKlIlMSATl~~~-~F~~yF~~---~pv--i~Ipgr~fpV~~---~yl~~---~~~--d~~~~~~~~~~~i~~~~~~g~i 321 (558)
-.+|+|||||... .|..+.+- ... ...+...|+-.. .+.+. .+. .++......+..+.... +|.+
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 3599999999884 44444321 111 123333333322 22221 112 56667677777766655 5689
Q ss_pred EEEecChHHHHHHHHhhh
Q psy12726 322 LLFLTGKLDVRKQLLGIM 339 (558)
Q Consensus 322 Lvfl~g~~ei~~~~~~~~ 339 (558)
|||.|+.+..+.....+.
T Consensus 483 lvlF~Sy~~l~~~~~~~~ 500 (654)
T COG1199 483 LVLFPSYEYLKRVAERLK 500 (654)
T ss_pred EEEeccHHHHHHHHHHHh
Confidence 999999987766554443
No 143
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=62.25 E-value=33 Score=39.65 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=55.8
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|-+..=-+-.=|-+.+...-+ -||--|+.|... +.|.+.+ +-
T Consensus 329 ~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY-~l 407 (913)
T PRK13103 329 QDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIY-GL 407 (913)
T ss_pred ECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHh-CC
Confidence 3447889999999966432222223444433222 367777777743 4455554 57
Q ss_pred CEEEecCCCCcceeeccC----CCCcchHHHHHHHHHHHHhcCCCCCEEEEecChH
Q psy12726 278 PIFTIPGRTFPVEVLYTK----EPETDYLDASLITVMQIHLREPPGDVLLFLTGKL 329 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~----~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ 329 (558)
+|+.||... |+.-.-.+ .+......+.+..+...|..-. -|||-.++.+
T Consensus 408 ~Vv~IPTnk-P~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~Gr--PVLVGT~SVe 460 (913)
T PRK13103 408 DVVVIPPNK-PLARKDFNDLVYLTAEEKYAAIITDIKECMALGR--PVLVGTATIE 460 (913)
T ss_pred CEEECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCC--CEEEEeCCHH
Confidence 889998653 43211111 1223344555566666665433 2565555444
No 144
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=53.50 E-value=90 Score=36.38 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=57.7
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++|+||...|-+..=-+-.=|-+.+....+ -||--|+.|.-. +.|.+.+ +.
T Consensus 448 ~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY-~l 526 (970)
T PRK12899 448 RDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIY-NL 526 (970)
T ss_pred ECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHh-CC
Confidence 3456899999999976443333333444432211 378888888743 4455555 57
Q ss_pred CEEEecCCCCcceeeccC----CCCcchHHHHHHHHHHHHhcCCCCCEEEEecCh
Q psy12726 278 PIFTIPGRTFPVEVLYTK----EPETDYLDASLITVMQIHLREPPGDVLLFLTGK 328 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~----~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~ 328 (558)
+|+.||... |+.-.-.+ .+..+...+.+..+.+.|.... -|||-.+..
T Consensus 527 ~v~~iPt~k-p~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~gr--PvLigt~si 578 (970)
T PRK12899 527 YVLQVPTFK-PCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGN--PILIGTESV 578 (970)
T ss_pred CEEECCCCC-CceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCC--CEEEEeCcH
Confidence 889998643 43222111 1223455566666777666543 366655544
No 145
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=50.60 E-value=40 Score=39.09 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=43.5
Q ss_pred eeEEEEecccch-H--HHhhhcCC--CCEEEecCCCCc-ceeeccC----C----CCcchHHHHHHHHHHHHhcCCCCCE
Q psy12726 256 IKLIVTSATLDA-V--KFSSYFFE--APIFTIPGRTFP-VEVLYTK----E----PETDYLDASLITVMQIHLREPPGDV 321 (558)
Q Consensus 256 lKlIlMSATl~~-~--~F~~yF~~--~pvi~Ipgr~fp-V~~~yl~----~----~~~d~~~~~~~~~~~i~~~~~~g~i 321 (558)
-.+|+|||||.. . .|.+-+|- .....+| -.|+ -...|.. . ...+|.+.....+..+. ..+|.+
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~ 650 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPI 650 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCE
Confidence 378999999963 2 25554551 2222222 1110 0111211 1 12467777777776665 457999
Q ss_pred EEEecChHHHHHHH
Q psy12726 322 LLFLTGKLDVRKQL 335 (558)
Q Consensus 322 Lvfl~g~~ei~~~~ 335 (558)
||+.|+.+.++...
T Consensus 651 LVLFtS~~~l~~v~ 664 (820)
T PRK07246 651 LVLFNSKKHLLAVS 664 (820)
T ss_pred EEEECcHHHHHHHH
Confidence 99999998876543
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=47.06 E-value=1.5e+02 Score=34.54 Aligned_cols=104 Identities=18% Similarity=0.051 Sum_probs=57.4
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|-+..=-+-.=|-+.+...-+ -||--|+.|... +.|.+.+ +.
T Consensus 319 ~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY-~l 397 (939)
T PRK12902 319 RNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTY-KL 397 (939)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh-CC
Confidence 3456889999999976543333333444443222 477778888743 4455544 57
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecChH
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGKL 329 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ 329 (558)
+|+.||... |+.-.=.++ +......+.+..+...|..-. -|||-..+.+
T Consensus 398 ~Vv~IPTnk-P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~Gr--PVLIgT~SVe 450 (939)
T PRK12902 398 EVTVIPTNR-PRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGR--PVLVGTTSVE 450 (939)
T ss_pred cEEEcCCCC-CeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCC--CEEEeeCCHH
Confidence 899998653 443322221 123344455556666555432 3555554443
No 147
>KOG0347|consensus
Probab=46.84 E-value=23 Score=38.08 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeec
Q psy12726 489 VPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATN 525 (558)
Q Consensus 489 ~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN 525 (558)
...+.+..+.|+|+...|++++...|+ |||||+
T Consensus 289 ~t~i~v~si~GGLavqKQqRlL~~~p~----IVVATP 321 (731)
T KOG0347|consen 289 KTQIRVASITGGLAVQKQQRLLNQRPD----IVVATP 321 (731)
T ss_pred ccCeEEEEeechhHHHHHHHHHhcCCC----EEEecc
Confidence 356999999999999999999998654 999997
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=46.64 E-value=17 Score=40.84 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred EEEeccCCCChHHHHhhcccCCCCCeEEEEeec
Q psy12726 493 IILPVYSALPSEMQTRIFEAAPPGSRKVVIATN 525 (558)
Q Consensus 493 ~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN 525 (558)
.|..|||.+++.+..+.|...-.|..+|||-|=
T Consensus 216 ~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 216 DVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred cEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 477799999999999999999999999999986
No 149
>PF05729 NACHT: NACHT domain
Probab=45.70 E-value=39 Score=29.75 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=41.8
Q ss_pred ceecccccccccCCC-----chhhhHHHhhc--CCCeeEEEEecccchHHHhhhcCCCCEEEecCC
Q psy12726 227 NQRLEPLQRTNRISF-----PPGLLKQAVKK--RPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGR 285 (558)
Q Consensus 227 vi~De~her~~~~D~-----ll~~lk~~l~~--r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr 285 (558)
+++|-..|-....+. +..+++.++.. .|+.|+|+.|.+-....+.+++.....+.|++-
T Consensus 85 lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 85 LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 666666555543332 55666777765 688999999998888888888877766777653
No 150
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=40.38 E-value=51 Score=39.05 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=47.4
Q ss_pred hhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHH---hhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 472 DTACEILYERMKSLGPDVPELIILPVYSALPSEMQT---RIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~---~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
..+.+.|.+.+.. ..+.+..+||+++..+.. .-|..++.+...++|||..+-.+|++....+||-.
T Consensus 497 t~~LdiLed~L~~-----~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 497 TRLLDILEDYLMY-----RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred HHHHHHHHHHHHH-----cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 4455556555533 236778899999977655 44666555566788999999999999988888753
No 151
>PRK05580 primosome assembly protein PriA; Validated
Probab=37.00 E-value=30 Score=39.22 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=37.1
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
..+..+||.++..++.+.+.....|.-+||++|.-|- -+.+.++..||
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liV 263 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLII 263 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEE
Confidence 4588899999999999998877778788999997543 24456776555
No 152
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=35.07 E-value=3e+02 Score=31.92 Aligned_cols=104 Identities=18% Similarity=0.092 Sum_probs=55.7
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|.+..=-+-.=|-+.+...-+ -||.-|+.|+.. +.|.+.+ +.
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY-~l 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY-NL 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh-CC
Confidence 4456889999999876443332223344432211 478888888854 4465555 68
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecChH
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGKL 329 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ 329 (558)
+|+.||... |+.-.-+++ +..+...+.+..+...|..-.| |||-....+
T Consensus 383 ~vv~IPtnk-p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grP--VLIgT~SIe 435 (870)
T CHL00122 383 EVVCIPTHR-PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRP--ILIGTTTIE 435 (870)
T ss_pred CEEECCCCC-CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCC--EEEeeCCHH
Confidence 888898653 332222221 1223344455555555554332 555544443
No 153
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=33.97 E-value=33 Score=34.36 Aligned_cols=41 Identities=17% Similarity=-0.043 Sum_probs=27.6
Q ss_pred cccceecccccccccCC-------CchhhhHHHhhcCCCeeEEEEeccc
Q psy12726 224 FKKNQRLEPLQRTNRIS-------FPPGLLKQAVKKRPEIKLIVTSATL 265 (558)
Q Consensus 224 ~~~vi~De~her~~~~D-------~ll~~lk~~l~~r~~lKlIlMSATl 265 (558)
..+|++||.|.-.-... .-.. +.++..+-|+=|+|-+|||-
T Consensus 173 dgvivfDEcH~akn~~~~~~~~sk~g~a-vl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 173 DGVIVFDECHKAKNLSSGSKKPSKTGIA-VLELQNRLPNARVVYASATG 220 (303)
T ss_pred CceEEeccchhcCCCCccCccccHHHHH-HHHHHHhCCCCcEEEecccc
Confidence 46899999998753321 0112 23455566899999999995
No 154
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=33.12 E-value=16 Score=36.21 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=27.2
Q ss_pred ccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhc
Q psy12726 223 KFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYF 274 (558)
Q Consensus 223 ~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF 274 (558)
.+..||+||+|.=. +.+- ...+.+...+ .-+.++||||.=.+...++|
T Consensus 134 ~~~~vIvDEaH~~k-~~~s--~~~~~l~~l~-~~~~~lLSgTP~~n~~~dl~ 181 (299)
T PF00176_consen 134 KWDRVIVDEAHRLK-NKDS--KRYKALRKLR-ARYRWLLSGTPIQNSLEDLY 181 (299)
T ss_dssp EEEEEEETTGGGGT-TTTS--HHHHHHHCCC-ECEEEEE-SS-SSSGSHHHH
T ss_pred cceeEEEecccccc-cccc--cccccccccc-cceEEeeccccccccccccc
Confidence 47899999999873 2221 1222333323 55678899997555555543
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=30.12 E-value=2.4e+02 Score=33.43 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=56.9
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCC----------------------eeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPE----------------------IKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~----------------------lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++|+||...|-+..==+-.=|-+.+....+ -||--|+.|... ..|.+.+ +-
T Consensus 508 ~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY-~L 586 (1112)
T PRK12901 508 MDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIY-KL 586 (1112)
T ss_pred ECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh-CC
Confidence 4557889999999976443222223444443222 367777777743 4455544 57
Q ss_pred CEEEecCCCCcceeeccCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEecCh
Q psy12726 278 PIFTIPGRTFPVEVLYTKE----PETDYLDASLITVMQIHLREPPGDVLLFLTGK 328 (558)
Q Consensus 278 pvi~Ipgr~fpV~~~yl~~----~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~ 328 (558)
+|+.||... |+.-.=.++ +......+.+..+...|..-.| |||--++.
T Consensus 587 ~Vv~IPTnr-P~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrP--VLVGT~SV 638 (1112)
T PRK12901 587 DVVVIPTNR-PIARKDKEDLVYKTKREKYNAVIEEITELSEAGRP--VLVGTTSV 638 (1112)
T ss_pred CEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCC--EEEEeCcH
Confidence 899999753 443221111 2223345666666666654433 55555443
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.77 E-value=1.2e+02 Score=34.40 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=39.0
Q ss_pred ccccccceecccccccccC-CCchhhhHHHhhcC---CCeeEEEEecccchHHHhhhc
Q psy12726 221 LSKFKKNQRLEPLQRTNRI-SFPPGLLKQAVKKR---PEIKLIVTSATLDAVKFSSYF 274 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~-D~ll~~lk~~l~~r---~~lKlIlMSATl~~~~F~~yF 274 (558)
+.+-+.||+||.|+-+.-. |-..-=.|++...| -+..|||=|||-..|.+..--
T Consensus 311 f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~ 368 (730)
T COG1198 311 FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAE 368 (730)
T ss_pred hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhh
Confidence 6677999999999998743 33333345544333 467899999999999987753
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=28.58 E-value=5.7e+02 Score=28.77 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCc
Q psy12726 300 DYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKN 352 (558)
Q Consensus 300 d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~ 352 (558)
+|.++....+..+... ..|..||..++...++.....+-.+....+..-|..
T Consensus 453 ~~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~ 504 (636)
T TIGR03117 453 TWLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEK 504 (636)
T ss_pred hHHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCC
Confidence 3666666666665443 468899999999888765544433334455544433
No 158
>PRK06526 transposase; Provisional
Probab=26.46 E-value=53 Score=32.17 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=41.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCC--------------CCEEEecCCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFE--------------APIFTIPGRT 286 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~--------------~pvi~Ipgr~ 286 (558)
+.++..+++||++.-..+.+. ..+|-.++..|-+-+-+|++.-.....+.++|++ |-+|.++|..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~-~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s 235 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEA-ANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDS 235 (254)
T ss_pred hccCCEEEEcccccCCCCHHH-HHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCC
Confidence 556788999999865432221 1233334432222234666666677778788765 5577888877
Q ss_pred Cccee
Q psy12726 287 FPVEV 291 (558)
Q Consensus 287 fpV~~ 291 (558)
|..+.
T Consensus 236 ~R~~~ 240 (254)
T PRK06526 236 YRLKD 240 (254)
T ss_pred cchhh
Confidence 76533
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=25.78 E-value=40 Score=28.57 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=28.5
Q ss_pred ccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecc
Q psy12726 225 KKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSAT 264 (558)
Q Consensus 225 ~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSAT 264 (558)
..+++||+|.-. .+-.+..|+.+.. .+.+++|+.+-+
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 479999999863 3666777777665 889999988655
No 160
>KOG1000|consensus
Probab=24.90 E-value=9.2e+02 Score=26.22 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhh---cccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 474 ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRI---FEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~v---f~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
+++.|...... .++-.+..-|+.++.+..-+ |+. .+.++--|||---|-++||.---..||
T Consensus 504 vLd~Iq~~~~~-----r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 504 VLDTIQVEVNK-----RKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred HHHHHHHHHHH-----cCCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEE
Confidence 44555544433 22456677788877765533 654 234566699999999999998877776
No 161
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.25 E-value=1.1e+02 Score=34.27 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=34.0
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeec------cccceeeeCCeEEEE
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATN------IAETSLTIDGIFYVV 540 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN------IAETSiTIpdV~~VI 540 (558)
.+.++++|+..+...|.+.++.. -.|||+|+ +..-.+.+.+|.+||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l~~~----~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRALRQG----PQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CceEEEEECCcCHHHHHHHhcCC----CCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 58899999999999998887643 35999996 223345677887554
No 162
>PF13173 AAA_14: AAA domain
Probab=22.91 E-value=79 Score=26.96 Aligned_cols=48 Identities=23% Similarity=0.016 Sum_probs=33.3
Q ss_pred ccccceecccccccccCCCchhhhHHHhhcCCCeeEEEE-ecccch-HHHhhhc
Q psy12726 223 KFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVT-SATLDA-VKFSSYF 274 (558)
Q Consensus 223 ~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlM-SATl~~-~~F~~yF 274 (558)
+...+++||+|.-. -+...+|.+....++.++|++ |+.... ....+.+
T Consensus 61 ~~~~i~iDEiq~~~----~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l 110 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP----DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESL 110 (128)
T ss_pred CCcEEEEehhhhhc----cHHHHHHHHHHhccCceEEEEccchHHHhhcccccC
Confidence 55789999998764 356677888888889999997 443332 3344444
No 163
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=22.52 E-value=81 Score=20.78 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.6
Q ss_pred EEEecCCCCcceeeccCCCC
Q psy12726 279 IFTIPGRTFPVEVLYTKEPE 298 (558)
Q Consensus 279 vi~Ipgr~fpV~~~yl~~~~ 298 (558)
..+|.+.+|.|.+||.+..-
T Consensus 4 ~~kIG~Tty~V~~~F~~~s~ 23 (37)
T PF14202_consen 4 EKKIGKTTYVVEVHFSETSK 23 (37)
T ss_pred EEEECCEEEEEEEEECCCcc
Confidence 45789999999999988643
No 164
>KOG0339|consensus
Probab=22.39 E-value=1.2e+02 Score=32.67 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=40.5
Q ss_pred HHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeec------cccceeeeCCeEE-EEc
Q psy12726 474 ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATN------IAETSLTIDGIFY-VVD 541 (558)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN------IAETSiTIpdV~~-VID 541 (558)
++.++...++..+... .+.++.+|+..+.-+|-+.++.-+ -|||||+ |-=-.++|-.|.| |+|
T Consensus 308 la~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~----EivVaTPgRlid~VkmKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGA----EIVVATPGRLIDMVKMKATNLSRVSYLVLD 377 (731)
T ss_pred HHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcCC----eEEEechHHHHHHHHhhcccceeeeEEEEe
Confidence 3444555555443332 388999999999999999998432 4888886 1122445556665 444
No 165
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=22.08 E-value=1e+02 Score=33.01 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=34.4
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeec------cccceeeeCCeEEEE
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATN------IAETSLTIDGIFYVV 540 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN------IAETSiTIpdV~~VI 540 (558)
.+.+..++|..+...|.+.++.. ..||++|. +....+.+.++.+||
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~~~----~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLEHG----AHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred CcEEEEEECCCChHHHHHHhcCC----CCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 58899999999999998877642 35999993 333456677887765
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.23 E-value=74 Score=35.89 Aligned_cols=52 Identities=6% Similarity=-0.068 Sum_probs=37.6
Q ss_pred ccccccceecccccccccCCCchh-hhHHHhh---cCCCeeEEEEecccchHHHhh
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPG-LLKQAVK---KRPEIKLIVTSATLDAVKFSS 272 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~-~lk~~l~---~r~~lKlIlMSATl~~~~F~~ 272 (558)
+.+-+.||+||.|+-+.-.+-..- =.|++.. +.-+..|||.|||-..+.|..
T Consensus 255 ~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 255 VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 566688999999998876553222 2344443 336789999999999998865
No 167
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=21.17 E-value=1.4e+02 Score=32.33 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=53.2
Q ss_pred hHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 473 TACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
++.+.|.+.+...+ +++--|||.+..-|...+....-.|.--|+|--|.-=-+|-||.|..|.
T Consensus 457 kmAEdLT~Yl~e~g-----ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 457 KMAEDLTEYLKELG-----IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred HHHHHHHHHHHhcC-----ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE
Confidence 34455555555444 8899999999999999999988889999999999999999999999885
No 168
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=21.11 E-value=85 Score=23.17 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=26.5
Q ss_pred Eecccch--HHHhhhcCCCCEEEecCCCCcceeeccC
Q psy12726 261 TSATLDA--VKFSSYFFEAPIFTIPGRTFPVEVLYTK 295 (558)
Q Consensus 261 MSATl~~--~~F~~yF~~~pvi~Ipgr~fpV~~~yl~ 295 (558)
|+-|++. ..|.+-|++-.+++-.|..+||++.=..
T Consensus 1 ~~~t~~~~~~r~~e~Fp~~slvef~g~~~PvtI~CP~ 37 (60)
T PF05265_consen 1 MAMTFESAASRFEEKFPHYSLVEFSGVATPVTIRCPK 37 (60)
T ss_pred CceeHHHHHHHHHHHCCCceEEEEeCCCCceEEECCC
Confidence 3444433 6688889998899999999999988544
Done!