Query psy12726
Match_columns 558
No_of_seqs 310 out of 2248
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:07:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 100.0 1.7E-42 6E-47 339.1 22.6 216 3-218 36-252 (270)
2 2xau_A PRE-mRNA-splicing facto 100.0 3.5E-35 1.2E-39 329.5 12.9 286 105-551 93-403 (773)
3 2xau_A PRE-mRNA-splicing facto 100.0 3.3E-31 1.1E-35 297.3 19.6 212 3-215 507-728 (773)
4 2va8_A SSO2462, SKI2-type heli 99.8 1.2E-20 4.2E-25 211.9 10.6 204 221-542 143-363 (715)
5 2p6r_A Afuhel308 helicase; pro 99.8 1.8E-20 6.1E-25 210.0 8.8 197 221-542 136-347 (702)
6 2zj8_A DNA helicase, putative 99.7 1.2E-18 3.9E-23 195.8 6.5 198 221-543 136-346 (720)
7 2z83_A Helicase/nucleoside tri 99.7 1.4E-17 4.7E-22 176.9 2.3 96 221-333 110-205 (459)
8 2jlq_A Serine protease subunit 99.6 7.6E-17 2.6E-21 170.9 5.3 96 221-333 108-203 (451)
9 3l9o_A ATP-dependent RNA helic 99.6 1.3E-15 4.5E-20 176.7 8.1 50 494-543 507-556 (1108)
10 3o8b_A HCV NS3 protease/helica 99.5 4.6E-15 1.6E-19 161.5 7.8 54 492-553 421-474 (666)
11 3eiq_A Eukaryotic initiation f 99.5 4.7E-15 1.6E-19 155.1 7.0 171 221-544 181-357 (414)
12 4a4z_A Antiviral helicase SKI2 99.5 1.8E-14 6.1E-19 165.7 12.0 73 221-294 145-223 (997)
13 3pey_A ATP-dependent RNA helic 99.5 9.6E-14 3.3E-18 143.8 12.7 54 492-545 268-321 (395)
14 2whx_A Serine protease/ntpase/ 99.5 5.2E-15 1.8E-19 162.0 2.5 95 221-333 275-370 (618)
15 2v6i_A RNA helicase; membrane, 99.4 4.4E-14 1.5E-18 148.7 1.4 94 221-332 91-185 (431)
16 3llm_A ATP-dependent RNA helic 99.4 1.1E-13 3.9E-18 133.4 2.0 153 106-282 61-235 (235)
17 2xgj_A ATP-dependent RNA helic 99.4 8.7E-13 3E-17 151.8 9.2 49 494-542 409-457 (1010)
18 3fht_A ATP-dependent RNA helic 99.3 2.6E-12 9E-17 133.9 10.9 54 492-545 291-344 (412)
19 1hv8_A Putative ATP-dependent 99.3 3E-12 1E-16 131.1 10.7 168 221-545 145-316 (367)
20 2wv9_A Flavivirin protease NS2 99.3 1.6E-12 5.4E-17 143.3 7.3 95 221-333 330-425 (673)
21 2ykg_A Probable ATP-dependent 99.3 4.4E-12 1.5E-16 141.8 10.4 55 492-546 427-490 (696)
22 2v1x_A ATP-dependent DNA helic 99.3 1.2E-11 4E-16 134.9 13.1 62 492-553 292-353 (591)
23 3rc3_A ATP-dependent RNA helic 99.3 4.9E-12 1.7E-16 139.1 9.7 54 492-547 345-401 (677)
24 1yks_A Genome polyprotein [con 99.3 1.4E-12 5E-17 137.4 4.6 51 492-547 202-252 (440)
25 2j0s_A ATP-dependent RNA helic 99.3 3.6E-12 1.2E-16 133.0 6.6 53 492-544 301-353 (410)
26 3fho_A ATP-dependent RNA helic 99.3 1.9E-12 6.5E-17 139.2 4.4 53 492-544 382-434 (508)
27 2db3_A ATP-dependent RNA helic 99.2 4.7E-11 1.6E-15 125.7 13.2 53 492-544 325-377 (434)
28 1xti_A Probable ATP-dependent 99.2 3.4E-11 1.2E-15 124.6 11.0 53 492-544 275-327 (391)
29 1s2m_A Putative ATP-dependent 99.2 3.4E-11 1.2E-15 125.1 10.6 53 492-544 283-335 (400)
30 1oyw_A RECQ helicase, ATP-depe 99.2 2.8E-11 9.6E-16 130.3 10.0 57 492-548 261-317 (523)
31 1fuu_A Yeast initiation factor 99.2 5.3E-12 1.8E-16 130.7 4.1 54 492-545 284-337 (394)
32 2i4i_A ATP-dependent RNA helic 99.2 3.7E-11 1.3E-15 125.5 9.1 53 492-544 301-353 (417)
33 2z0m_A 337AA long hypothetical 99.2 5.7E-11 1.9E-15 120.1 10.0 51 494-544 243-293 (337)
34 3fmp_B ATP-dependent RNA helic 99.1 1.5E-11 5.1E-16 131.3 4.3 54 492-545 358-411 (479)
35 3i5x_A ATP-dependent RNA helic 99.1 1.1E-10 3.8E-15 127.0 8.0 54 492-545 367-420 (563)
36 3sqw_A ATP-dependent RNA helic 99.1 8.9E-11 3E-15 128.3 7.0 54 492-545 316-369 (579)
37 4gl2_A Interferon-induced heli 99.1 1.2E-10 4.2E-15 130.1 7.1 54 491-544 430-491 (699)
38 3eaq_A Heat resistant RNA depe 99.0 1.4E-10 4.9E-15 109.7 3.7 55 492-546 56-110 (212)
39 3i32_A Heat resistant RNA depe 99.0 2.5E-10 8.4E-15 113.6 4.8 55 492-546 53-107 (300)
40 2eyq_A TRCF, transcription-rep 98.9 2.9E-09 9.8E-14 124.4 10.9 49 492-540 839-887 (1151)
41 1wp9_A ATP-dependent RNA helic 98.9 3.7E-09 1.3E-13 111.9 10.5 53 492-544 386-446 (494)
42 4f92_B U5 small nuclear ribonu 98.9 5.7E-09 1.9E-13 125.7 11.9 49 494-542 1216-1264(1724)
43 3oiy_A Reverse gyrase helicase 98.9 1.4E-09 5E-14 113.5 5.9 48 492-545 277-330 (414)
44 1gm5_A RECG; helicase, replica 98.9 4.2E-10 1.4E-14 125.7 1.7 54 492-545 614-667 (780)
45 4a2p_A RIG-I, retinoic acid in 98.8 9.7E-09 3.3E-13 111.2 8.5 51 494-544 429-480 (556)
46 3tbk_A RIG-I helicase domain; 98.8 1.4E-08 4.6E-13 109.9 9.1 51 494-544 428-479 (555)
47 4ddu_A Reverse gyrase; topoiso 98.7 6.7E-09 2.3E-13 120.6 6.7 49 492-546 334-388 (1104)
48 3i4u_A ATP-dependent RNA helic 98.7 1.9E-09 6.7E-14 105.0 1.3 111 329-439 142-252 (270)
49 4f92_B U5 small nuclear ribonu 98.6 4.9E-08 1.7E-12 117.7 8.4 48 494-541 381-428 (1724)
50 4a2w_A RIG-I, retinoic acid in 98.6 1E-07 3.4E-12 109.6 10.4 51 494-544 670-721 (936)
51 4a2q_A RIG-I, retinoic acid in 98.6 9.7E-08 3.3E-12 108.1 10.2 51 494-544 670-721 (797)
52 1gku_B Reverse gyrase, TOP-RG; 98.4 2.9E-08 9.8E-13 115.2 -0.3 49 492-545 299-352 (1054)
53 1fuk_A Eukaryotic initiation f 98.3 1.1E-06 3.8E-11 79.1 7.8 54 492-545 55-108 (165)
54 2oca_A DAR protein, ATP-depend 98.2 1.3E-06 4.3E-11 93.7 7.6 51 493-543 373-424 (510)
55 1c4o_A DNA nucleotide excision 98.2 7.1E-06 2.4E-10 90.5 12.3 53 492-544 464-516 (664)
56 2rb4_A ATP-dependent RNA helic 98.1 4.4E-06 1.5E-10 75.9 8.0 53 492-544 59-111 (175)
57 2d7d_A Uvrabc system protein B 98.1 8.9E-06 3E-10 89.7 11.8 53 492-544 470-522 (661)
58 2fwr_A DNA repair protein RAD2 98.1 5.5E-07 1.9E-11 95.5 1.5 50 494-543 371-420 (472)
59 2p6n_A ATP-dependent RNA helic 98.1 2.2E-06 7.7E-11 79.2 5.4 53 492-544 79-131 (191)
60 2hjv_A ATP-dependent RNA helic 98.1 5.4E-06 1.9E-10 74.4 6.6 53 492-544 60-112 (163)
61 1t5i_A C_terminal domain of A 98.0 8.3E-06 2.8E-10 74.0 7.3 53 492-544 56-108 (172)
62 2jgn_A DBX, DDX3, ATP-dependen 97.9 7.7E-06 2.6E-10 75.1 5.6 53 492-544 71-123 (185)
63 2yjt_D ATP-dependent RNA helic 97.0 3.3E-06 1.1E-10 76.4 0.0 55 491-545 54-108 (170)
64 3h1t_A Type I site-specific re 97.6 0.00034 1.1E-08 76.2 13.5 50 494-543 474-525 (590)
65 3jux_A Protein translocase sub 97.6 0.00016 5.3E-09 78.6 9.9 104 222-331 354-487 (822)
66 1tf5_A Preprotein translocase 97.4 0.00064 2.2E-08 75.2 11.1 61 492-554 457-525 (844)
67 1qde_A EIF4A, translation init 97.3 9.8E-05 3.3E-09 69.5 3.4 67 221-289 153-223 (224)
68 3dmq_A RNA polymerase-associat 97.2 0.00049 1.7E-08 79.2 7.7 52 492-543 529-582 (968)
69 2fsf_A Preprotein translocase 96.9 0.0036 1.2E-07 69.3 11.3 43 492-536 466-508 (853)
70 3iuy_A Probable ATP-dependent 96.8 0.00066 2.3E-08 64.0 4.0 60 221-281 165-227 (228)
71 1nkt_A Preprotein translocase 96.6 0.0071 2.4E-07 67.1 10.6 70 256-331 396-473 (922)
72 2oxc_A Probable ATP-dependent 96.6 0.0012 4.2E-08 62.3 4.1 61 221-282 164-228 (230)
73 3ber_A Probable ATP-dependent 96.4 0.0023 7.7E-08 61.4 4.7 61 221-283 184-248 (249)
74 2va8_A SSO2462, SKI2-type heli 96.4 0.007 2.4E-07 67.3 9.1 115 4-118 493-625 (715)
75 2pl3_A Probable ATP-dependent 96.3 0.0029 1E-07 59.8 4.9 63 221-285 169-235 (236)
76 2gxq_A Heat resistant RNA depe 96.3 0.002 6.7E-08 59.5 3.5 60 221-282 142-205 (207)
77 3fe2_A Probable ATP-dependent 96.2 0.0027 9.1E-08 60.4 3.8 62 221-284 174-239 (242)
78 1q0u_A Bstdead; DEAD protein, 96.1 0.0038 1.3E-07 58.3 4.0 60 221-282 148-211 (219)
79 3bor_A Human initiation factor 96.0 0.0032 1.1E-07 59.7 3.3 60 221-282 171-234 (237)
80 2p6r_A Afuhel308 helicase; pro 95.9 0.034 1.2E-06 61.5 11.7 113 4-117 474-603 (702)
81 1z63_A Helicase of the SNF2/RA 95.9 0.017 5.7E-07 61.2 8.8 52 492-543 367-420 (500)
82 1vec_A ATP-dependent RNA helic 95.9 0.0055 1.9E-07 56.4 4.2 54 221-276 144-201 (206)
83 1t6n_A Probable ATP-dependent 95.7 0.0041 1.4E-07 58.0 2.4 61 221-282 156-220 (220)
84 3dkp_A Probable ATP-dependent 95.3 0.013 4.4E-07 55.6 4.4 64 221-285 173-243 (245)
85 2zj8_A DNA helicase, putative 95.2 0.056 1.9E-06 60.1 10.1 113 5-117 478-613 (720)
86 3ly5_A ATP-dependent RNA helic 94.5 0.027 9.1E-07 54.2 4.4 56 221-278 199-258 (262)
87 1wrb_A DJVLGB; RNA helicase, D 94.3 0.027 9.2E-07 53.7 3.8 62 221-284 172-241 (253)
88 3fmo_B ATP-dependent RNA helic 93.3 0.052 1.8E-06 53.3 4.0 62 221-283 233-298 (300)
89 3b6e_A Interferon-induced heli 92.9 0.049 1.7E-06 50.1 2.9 43 221-264 160-216 (216)
90 2w00_A HSDR, R.ECOR124I; ATP-b 92.2 0.79 2.7E-05 52.6 12.2 68 221-294 399-480 (1038)
91 1z5z_A Helicase of the SNF2/RA 87.8 0.16 5.4E-06 49.0 1.4 51 492-543 138-191 (271)
92 1z3i_X Similar to RAD54-like; 86.5 0.76 2.6E-05 50.1 6.1 52 492-543 441-495 (644)
93 2vl7_A XPD; helicase, unknown 80.0 4.6 0.00016 42.8 8.8 26 519-544 430-461 (540)
94 3mwy_W Chromo domain-containin 79.8 1.1 3.7E-05 50.3 3.9 51 492-542 597-650 (800)
95 1rif_A DAR protein, DNA helica 71.6 2.1 7.2E-05 41.0 3.0 41 221-267 223-264 (282)
96 2fz4_A DNA repair protein RAD2 70.1 3.1 0.00011 38.8 3.8 40 222-267 191-230 (237)
97 3crv_A XPD/RAD3 related DNA he 35.6 74 0.0025 33.4 7.7 78 256-335 316-410 (551)
98 2ipc_A Preprotein translocase 35.4 1.6E+02 0.0056 33.0 10.3 105 223-333 324-458 (997)
99 4a15_A XPD helicase, ATP-depen 34.7 68 0.0023 34.4 7.3 78 256-335 376-465 (620)
100 2kqs_B Death domain-associated 29.6 20 0.00067 20.6 1.0 12 253-264 10-21 (26)
101 4dad_A Putative pilus assembly 20.9 1.6E+02 0.0056 23.6 5.9 33 243-275 83-115 (146)
102 3kto_A Response regulator rece 20.8 1.4E+02 0.0047 23.8 5.3 32 243-274 68-99 (136)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=339.14 Aligned_cols=216 Identities=83% Similarity=1.310 Sum_probs=203.3
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVY 81 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~ 81 (558)
+|+||++ ++|++||+|||+||||+.|..++|++++++|||+||+++||.+|.+++++++..|.+|....|||++++|+|
T Consensus 36 ~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~ 115 (270)
T 3i4u_A 36 EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVY 115 (270)
T ss_dssp TSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccccCCchhHHHHHHHHHHccCCCChHHHHHHHH
Confidence 4899999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCCCchHHHHHHHHcCCcceeEeeCCCCCceeeeC
Q psy12726 82 NSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVD 161 (558)
Q Consensus 82 ~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsgkst~i~~~lL~~g~~~~~A~~r~~~~~~~~~~ 161 (558)
++|.+.+..++||++|||+.++|+++.++|+||.+++++.++....++.+...++.+|++||++|+|.++..+.|.+..+
T Consensus 116 ~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~ 195 (270)
T 3i4u_A 116 NSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLID 195 (270)
T ss_dssp HHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTT
T ss_pred HHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccC
Confidence 99998888889999999999999999999999999999988876677778888999999999999998887778988899
Q ss_pred CeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCc
Q psy12726 162 SQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDP 218 (558)
Q Consensus 162 ~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~ 218 (558)
+..+++||+|++++..|+|+||+|++.|++.|+|.++.|+|+||.+++|+++...+-
T Consensus 196 ~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ap~~~~~~~~ 252 (270)
T 3i4u_A 196 QQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEV 252 (270)
T ss_dssp CCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTEECC--
T ss_pred CCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHHhHHHhccccc
Confidence 999999999999888899999999999999999999999999999999999876653
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.5e-35 Score=329.54 Aligned_cols=286 Identities=38% Similarity=0.532 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHcCCc----ceeE------------eeCCCCCceeeeCCeE
Q psy12726 105 KRAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCSGFF----RNAA------------KKDPQEGYRTLVDSQV 164 (558)
Q Consensus 105 ~~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~g~~----~~~A------------~~r~~~~~~~~~~~~v 164 (558)
+|+...++.+...+..++.+++ |+||++++|+.++..++. ..+. +.+.........+..+
T Consensus 93 lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~v 172 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEV 172 (773)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTE
T ss_pred CChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhee
Confidence 4566667888888888765444 899999998887764432 1121 1111122223445667
Q ss_pred EEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCchh
Q psy12726 165 VYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPPG 244 (558)
Q Consensus 165 ~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll~ 244 (558)
||..+.... ......|. ++|.|.+++.+.. ++. +..++++++||+|+|++++|++++
T Consensus 173 G~~i~~~~~--~~~~~~I~---v~T~G~l~r~l~~-~~~-----------------l~~~~~lIlDEah~R~ld~d~~~~ 229 (773)
T 2xau_A 173 GYSIRFENK--TSNKTILK---YMTDGMLLREAME-DHD-----------------LSRYSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp EEEETTEEE--CCTTCSEE---EEEHHHHHHHHHH-STT-----------------CTTEEEEEECSGGGCCHHHHHHHH
T ss_pred cceeccccc--cCCCCCEE---EECHHHHHHHHhh-Ccc-----------------ccCCCEEEecCccccccchHHHHH
Confidence 776665544 23344444 6788877765332 333 889999999999999999999999
Q ss_pred hhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEE
Q psy12726 245 LLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDVLLF 324 (558)
Q Consensus 245 ~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvf 324 (558)
+++.++..++++++|+||||++.+.|.+||+++|++.++|+.|||+++|.+.+..+|++.+...+.+++...++|++|||
T Consensus 230 ~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF 309 (773)
T 2xau_A 230 LLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLF 309 (773)
T ss_dssp HHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhh
Q psy12726 325 LTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIY 404 (558)
Q Consensus 325 l~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (558)
++|..+++.....+...
T Consensus 310 ~~~~~~i~~l~~~L~~~--------------------------------------------------------------- 326 (773)
T 2xau_A 310 LTGEDEIEDAVRKISLE--------------------------------------------------------------- 326 (773)
T ss_dssp CSCHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999986543211000
Q ss_pred hhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhc
Q psy12726 405 HELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKS 484 (558)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~ 484 (558)
...+..
T Consensus 327 ----------------------------------------------------------------------~~~l~~---- 332 (773)
T 2xau_A 327 ----------------------------------------------------------------------GDQLVR---- 332 (773)
T ss_dssp ----------------------------------------------------------------------HHHHHH----
T ss_pred ----------------------------------------------------------------------HHhhcc----
Confidence 000000
Q ss_pred CCCCCCceEEEeccCCCChHHHHhhcccCC-----CCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhc
Q psy12726 485 LGPDVPELIILPVYSALPSEMQTRIFEAAP-----PGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAK 551 (558)
Q Consensus 485 ~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~-----~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~ 551 (558)
......+.+.+|||+|++++|.++|+..+ +|.+||||||||||+|||||+|+||||+|..|.+.|+
T Consensus 333 -~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd 403 (773)
T 2xau_A 333 -EEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYN 403 (773)
T ss_dssp -HHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEE
T ss_pred -cccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeec
Confidence 00113488999999999999999999998 9999999999999999999999999999977655444
No 3
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=3.3e-31 Score=297.29 Aligned_cols=212 Identities=44% Similarity=0.791 Sum_probs=189.2
Q ss_pred CCCCCcc-cccccCccchhhHHHHHHhhccCChHHHHHHHhHhcCCCCccCChhHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy12726 3 SLVVTPI-SQMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQMEGDHITLLAVY 81 (558)
Q Consensus 3 ~~~lT~l-~~ma~lPl~PrlakmLl~~~~~~c~~~~~~iaA~Ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~ 81 (558)
+|+||++ +.|+.||++|++||||+.|..++|++++++|||+|+++++|..|.+.+++++..+..|....|||++++++|
T Consensus 507 ~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~ 586 (773)
T 2xau_A 507 EGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVY 586 (773)
T ss_dssp TSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHH
T ss_pred CCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4799999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC---Cc-hHHHHHccCCHHHHHHHHHHHHHHHHHhHhcCcceecCC----CchHHHHHHHHcCCcceeEeeCCC
Q psy12726 82 NSWRNNK---FS-NAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAG----KNTVRVQKAVCSGFFRNAAKKDPQ 153 (558)
Q Consensus 82 ~~~~~~~---~~-~~~c~~~~L~~~~l~~i~~~r~qL~~~l~~~~~~~~gsg----kst~i~~~lL~~g~~~~~A~~r~~ 153 (558)
++|.... .. ..||++|||++++|+.+.++++||.+++...++....++ .....++.++++||++++|..+..
T Consensus 587 ~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~ 666 (773)
T 2xau_A 587 HAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSG 666 (773)
T ss_dssp HHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC
T ss_pred HHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccC
Confidence 9996543 33 789999999999999999999999999998877655322 233568889999999999987766
Q ss_pred CC-ceeeeCCeEEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCccccc
Q psy12726 154 EG-YRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKF 215 (558)
Q Consensus 154 ~~-~~~~~~~~v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~ 215 (558)
+. |.++.++..+++||+|++. ..|+|++|+++..|++.|++.++.++|+||.+++|+++..
T Consensus 667 ~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~ 728 (773)
T 2xau_A 667 AKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDL 728 (773)
T ss_dssp --CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSCG
T ss_pred CCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccchhheeecccCCHHHHHHHHHHheee
Confidence 54 8788889999999999993 4689999999999999999999999999999999999754
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.2e-20 Score=211.88 Aligned_cols=204 Identities=13% Similarity=0.058 Sum_probs=134.8
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccc-hHHHhhhcCCCCEEEecCCCCcceeeccCCC--
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLD-AVKFSSYFFEAPIFTIPGRTFPVEVLYTKEP-- 297 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~-~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~-- 297 (558)
+..++.||+||+|+.. .+..-..++.++.+.+++|+|+||||++ .+.|++||+ ++++..++|.+|++.++....
T Consensus 143 l~~~~~vIiDE~H~l~--~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~ 219 (715)
T 2va8_A 143 LNEVNYFVLDELHYLN--DPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERK 219 (715)
T ss_dssp GGGEEEEEECSGGGGG--CTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSS
T ss_pred hhccCEEEEechhhcC--CcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCc
Confidence 7789999999999954 2233456677776667999999999996 899999995 788999999999986653211
Q ss_pred ------------Ccch--HHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhh
Q psy12726 298 ------------ETDY--LDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSG 363 (558)
Q Consensus 298 ------------~~d~--~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (558)
...+ .......+.+++. +.|++|||+++.++++.....+........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~----------------- 280 (715)
T 2va8_A 220 KKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVS----------------- 280 (715)
T ss_dssp TTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSC-----------------
T ss_pred ccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhcc-----------------
Confidence 0111 1334444555443 579999999999998765544332211000
Q ss_pred hhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhh
Q psy12726 364 FFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLS 443 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~ 443 (558)
+..+-...+.++...+...
T Consensus 281 ---------------------------------------~~~~~~~~~~~~~~~i~~~---------------------- 299 (715)
T 2va8_A 281 ---------------------------------------LDENALSEILKQLDDIEEG---------------------- 299 (715)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHTCCSS----------------------
T ss_pred ---------------------------------------CChHHHHHHHHHHHHhhhc----------------------
Confidence 0000000000111000000
Q ss_pred hhhhhccccccccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEe
Q psy12726 444 KFKKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIA 523 (558)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIla 523 (558)
-....+.+.+.. ...|.++||+|+.++|.++|+..++|.+|||+|
T Consensus 300 ---------------------------~~~~~~~l~~~~--------~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlva 344 (715)
T 2va8_A 300 ---------------------------GSDEKELLKSLI--------SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVA 344 (715)
T ss_dssp ---------------------------CHHHHHHHHHHH--------TTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred ---------------------------cccccHHHHHHH--------hcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 000111222211 134888999999999999999999999999999
Q ss_pred eccccceeeeCCeEEEEcC
Q psy12726 524 TNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 524 TNIAETSiTIpdV~~VID~ 542 (558)
||+||+|||||++++|||+
T Consensus 345 T~~l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 345 TPTLAAGVNLPARTVIIGD 363 (715)
T ss_dssp CGGGGGSSCCCBSEEEECC
T ss_pred ChHHhcccCCCceEEEEeC
Confidence 9999999999999999995
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.81 E-value=1.8e-20 Score=209.99 Aligned_cols=197 Identities=15% Similarity=0.075 Sum_probs=134.4
Q ss_pred ccccccceeccccc-----ccccCCCchhhhHHHhhcCCCeeEEEEecccc-hHHHhhhcCCCCEEEecCCCCcceeecc
Q psy12726 221 LSKFKKNQRLEPLQ-----RTNRISFPPGLLKQAVKKRPEIKLIVTSATLD-AVKFSSYFFEAPIFTIPGRTFPVEVLYT 294 (558)
Q Consensus 221 l~~~~~vi~De~he-----r~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~-~~~F~~yF~~~pvi~Ipgr~fpV~~~yl 294 (558)
+..++.+|+||+|+ |....+.+++.++. .++++|+|+||||++ .+.|++||+ ++++..++|.+|++.++.
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~ 211 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVL 211 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEE
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEe
Confidence 77889999999998 77777777776664 468999999999998 899999995 889999999999998765
Q ss_pred CCCCcchHHH---------HHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhh
Q psy12726 295 KEPETDYLDA---------SLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFF 365 (558)
Q Consensus 295 ~~~~~d~~~~---------~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (558)
..+..++.+. ....+.+.+. +.+++|||+++.++++.....+....... ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-~~~---------------- 272 (702)
T 2p6r_A 212 CEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKY-VEN---------------- 272 (702)
T ss_dssp CSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTT-CCC----------------
T ss_pred eCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhh-cCh----------------
Confidence 4322222111 2333333332 57899999999998876543332211000 000
Q ss_pred hcccccCCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhh
Q psy12726 366 RNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKF 445 (558)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~ 445 (558)
.+.. +.+ ...
T Consensus 273 ---------------------------------------~~~~----~~i--------------~~~------------- 282 (702)
T 2p6r_A 273 ---------------------------------------EGLE----KAI--------------LEE------------- 282 (702)
T ss_dssp ---------------------------------------SSHH----HHH--------------HTT-------------
T ss_pred ---------------------------------------HHHH----HHH--------------Hhh-------------
Confidence 0000 000 000
Q ss_pred hhhccccccccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeec
Q psy12726 446 KKNQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATN 525 (558)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTN 525 (558)
.-......+.+.. ...|.++||+|++++|..+++..++|.+|||+|||
T Consensus 283 ------------------------~~~~~~~~l~~~~--------~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~ 330 (702)
T 2p6r_A 283 ------------------------NEGEMSRKLAECV--------RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 330 (702)
T ss_dssp ------------------------CCSHHHHHHHHHH--------HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECS
T ss_pred ------------------------ccccccHHHHHHH--------hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECc
Confidence 0000111222211 13367799999999999999998999999999999
Q ss_pred cccceeeeCCeEEEEcC
Q psy12726 526 IAETSLTIDGIFYVVDP 542 (558)
Q Consensus 526 IAETSiTIpdV~~VID~ 542 (558)
+||+||+||++++|||+
T Consensus 331 ~l~~Gidip~~~~VI~~ 347 (702)
T 2p6r_A 331 TLAAGVNLPARRVIVRS 347 (702)
T ss_dssp TTTSSSCCCBSEEEECC
T ss_pred HHhccCCCCceEEEEcC
Confidence 99999999999999995
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.73 E-value=1.2e-18 Score=195.83 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=129.9
Q ss_pred ccccccceecccc-----cccccCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcCCCCEEEecCCCCcceeecc
Q psy12726 221 LSKFKKNQRLEPL-----QRTNRISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFFEAPIFTIPGRTFPVEVLYT 294 (558)
Q Consensus 221 l~~~~~vi~De~h-----er~~~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl 294 (558)
+..++.||+||+| +|...++.+++.++ +++++|+||||+ +.+.|++||+ ++++..++|.+|++.++.
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~ 208 (720)
T 2zj8_A 136 IKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVF 208 (720)
T ss_dssp GGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEE
T ss_pred hhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEE
Confidence 6788999999999 78877776666554 389999999999 6899999994 677889999999987653
Q ss_pred CCCCcch-------HHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhc
Q psy12726 295 KEPETDY-------LDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRN 367 (558)
Q Consensus 295 ~~~~~d~-------~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (558)
.....+| .......+.+++. +.+++|||++++++++.....+....... .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-~-------------------- 265 (720)
T 2zj8_A 209 YQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSL-L-------------------- 265 (720)
T ss_dssp ETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGG-S--------------------
T ss_pred eCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHh-c--------------------
Confidence 3221111 1112233333332 46899999999998876543332211000 0
Q ss_pred ccccCCCCCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhh
Q psy12726 368 AAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKK 447 (558)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~ 447 (558)
..+-...+..... ...
T Consensus 266 ------------------------------------~~~~~~~~~~~~~---~i~------------------------- 281 (720)
T 2zj8_A 266 ------------------------------------TKPEIRALNELAD---SLE------------------------- 281 (720)
T ss_dssp ------------------------------------CHHHHHHHHHHHH---TSC-------------------------
T ss_pred ------------------------------------ChhhHHHHHHHHH---HHh-------------------------
Confidence 0000000000000 000
Q ss_pred hccccccccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccc
Q psy12726 448 NQRLEPLYNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIA 527 (558)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIA 527 (558)
+ ....+.|.+.. +..|.++||+|++++|.++++..++|.++||+|||++
T Consensus 282 ------------~-----------~~~~~~l~~~~--------~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 330 (720)
T 2zj8_A 282 ------------E-----------NPTNEKLAKAI--------RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTL 330 (720)
T ss_dssp ------------S-----------CHHHHHHHHHH--------TTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTT
T ss_pred ------------c-----------ccchHHHHHHH--------hcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHh
Confidence 0 00001122221 1348899999999999999999999999999999999
Q ss_pred cceeeeCCeEEEEcCC
Q psy12726 528 ETSLTIDGIFYVVDPF 543 (558)
Q Consensus 528 ETSiTIpdV~~VID~g 543 (558)
|+||+||++++|||.+
T Consensus 331 ~~Gvdip~~~~VI~~~ 346 (720)
T 2zj8_A 331 SAGINTPAFRVIIRDI 346 (720)
T ss_dssp GGGCCCCBSEEEECCS
T ss_pred hccCCCCceEEEEcCC
Confidence 9999999999999943
No 7
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.66 E-value=1.4e-17 Score=176.94 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=66.1
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETD 300 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d 300 (558)
+..++++|+||+|+++..+++.+++++... .+++.++|+||||+..+...-...+.|++.++ +.+|...+... .+
T Consensus 110 l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-~~~~~~~il~SAT~~~~~~~~~~~~~pi~~~~-~~~~~~~~~~~---~~ 184 (459)
T 2z83_A 110 VPNYNLFVMDEAHFTDPASIAARGYIATKV-ELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQ-DEIPDRAWSSG---YE 184 (459)
T ss_dssp CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSCCSSC---CH
T ss_pred ccCCcEEEEECCccCCchhhHHHHHHHHHh-ccCCccEEEEEcCCCcchhhhccCCCCeEEec-ccCCcchhHHH---HH
Confidence 778999999999999888888888887765 45789999999999876432223467777654 23443322111 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 301 YLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
++. ...+.+|||+++..+++.
T Consensus 185 ~l~------------~~~~~~LVF~~s~~~~~~ 205 (459)
T 2z83_A 185 WIT------------EYAGKTVWFVASVKMGNE 205 (459)
T ss_dssp HHH------------HCCSCEEEECSCHHHHHH
T ss_pred HHH------------hcCCCEEEEeCChHHHHH
Confidence 111 126889999999877643
No 8
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.64 E-value=7.6e-17 Score=170.88 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=67.9
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEecCCCCcceeeccCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTIPGRTFPVEVLYTKEPETD 300 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~Ipgr~fpV~~~yl~~~~~d 300 (558)
+.+++.+|+||+|.++...+.+++++... ...++.++|+||||++.+.+..++++++++.++ +.+|...+... .+
T Consensus 108 l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~---~~ 182 (451)
T 2jlq_A 108 VPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERSWNTG---FD 182 (451)
T ss_dssp CCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSCCSSS---CH
T ss_pred ccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCCceEecC-ccCCchhhHHH---HH
Confidence 77889999999998866666666655432 245789999999999987777777788888776 66664433211 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 301 YLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
++ ....|.+|||+++..+++.
T Consensus 183 ~l------------~~~~~~~lVF~~s~~~a~~ 203 (451)
T 2jlq_A 183 WI------------TDYQGKTVWFVPSIKAGND 203 (451)
T ss_dssp HH------------HHCCSCEEEECSSHHHHHH
T ss_pred HH------------HhCCCCEEEEcCCHHHHHH
Confidence 11 1136789999999887643
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-15 Score=176.69 Aligned_cols=50 Identities=22% Similarity=0.066 Sum_probs=45.8
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
|.++||+|++.++..++.....|..+|++||+++|++|+||+|++||+..
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecC
Confidence 88999999999999999988899999999999999999999999999865
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.54 E-value=4.6e-15 Score=161.45 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=44.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
+.+.++||.++.++ |. ++.++|+||||+||.+|+|| |.+|||+|..+...++|+
T Consensus 421 ~~v~~lHG~l~q~e----r~---~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyD 474 (666)
T 3o8b_A 421 INAVAYYRGLDVSV----IP---TIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFS 474 (666)
T ss_dssp CCEEEECTTSCGGG----SC---SSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECC
T ss_pred CcEEEecCCCCHHH----HH---hCCCcEEEECChHHccCCCC-CcEEEecCcccccccccc
Confidence 67899999998765 32 35679999999999999997 999999997776665555
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.53 E-value=4.7e-15 Score=155.05 Aligned_cols=171 Identities=12% Similarity=0.145 Sum_probs=112.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHH---hhhcCCCCEEEecCCCCcc---eeecc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKF---SSYFFEAPIFTIPGRTFPV---EVLYT 294 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F---~~yF~~~pvi~Ipgr~fpV---~~~yl 294 (558)
+..++.+++||+|.-. +.++.-.+.+.+...+++.++|+||||+..+.+ ..|+.++..+.+.....+. ..+|.
T Consensus 181 ~~~~~~vViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 181 PKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp STTCCEEEECSHHHHH-HTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEE
T ss_pred cccCcEEEEECHHHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEE
Confidence 5667899999999843 444443333333335578999999999976544 5577766666666554443 33343
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCC
Q psy12726 295 KEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQ 374 (558)
Q Consensus 295 ~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (558)
.....++ ....+..+....+.+.+|||+++.+++....
T Consensus 260 ~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~--------------------------------------- 297 (414)
T 3eiq_A 260 NVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLT--------------------------------------- 297 (414)
T ss_dssp ECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHH---------------------------------------
T ss_pred EeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH---------------------------------------
Confidence 3332332 3344555566667789999999887664321
Q ss_pred CCccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhcccccc
Q psy12726 375 EGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPL 454 (558)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~ 454 (558)
T Consensus 298 -------------------------------------------------------------------------------- 297 (414)
T 3eiq_A 298 -------------------------------------------------------------------------------- 297 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeC
Q psy12726 455 YNKYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTID 534 (558)
Q Consensus 455 ~~~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIp 534 (558)
+.|.+ ..+.+..+||.++.+++.++++...+|..+|++||+++|++|+||
T Consensus 298 ---------------------~~l~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 298 ---------------------EKMHA---------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp ---------------------HHHHT---------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred ---------------------HHHHh---------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 11111 125688999999999999999988899999999999999999999
Q ss_pred CeEEEEcCCh
Q psy12726 535 GIFYVVDPFD 544 (558)
Q Consensus 535 dV~~VID~g~ 544 (558)
+|.+||+.+.
T Consensus 348 ~v~~Vi~~~~ 357 (414)
T 3eiq_A 348 QVSLVINYDL 357 (414)
T ss_dssp GCSCEEESSC
T ss_pred CCCEEEEeCC
Confidence 9999999774
No 12
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.53 E-value=1.8e-14 Score=165.72 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEeccc-chHHHhhhcC-----CCCEEEecCCCCcceeecc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATL-DAVKFSSYFF-----EAPIFTIPGRTFPVEVLYT 294 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl-~~~~F~~yF~-----~~pvi~Ipgr~fpV~~~yl 294 (558)
+..++.+++||+| +..+.++-..+-+.+...+++.++|+||||+ +...|.+||+ .+.++..++|.+|++.++.
T Consensus 145 l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~ 223 (997)
T 4a4z_A 145 IRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIW 223 (997)
T ss_dssp GGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEE
T ss_pred hcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEe
Confidence 6788999999999 6556665555544444566789999999999 8899999985 4568889999999997754
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.49 E-value=9.6e-14 Score=143.82 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=49.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++.+++.++++....|..+|++||+++|++|+||+|.+||+.+.-
T Consensus 268 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 268 HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCC
Confidence 558889999999999999988888999999999999999999999999987643
No 14
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.48 E-value=5.2e-15 Score=161.99 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=63.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhcC-CCCEEEecCCCCcceeeccCCCCc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFF-EAPIFTIPGRTFPVEVLYTKEPET 299 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~-~~pvi~Ipgr~fpV~~~yl~~~~~ 299 (558)
+..++.+|+||+|+++...+..++.++..+ .+++.++|+||||+... ..+++. +++++.++.+ +|.+.+ .
T Consensus 275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~~~~~~------~ 345 (618)
T 2whx_A 275 VPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-IPERSW------N 345 (618)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-CCSSCC------S
T ss_pred ccCCeEEEEECCCCCCccHHHHHHHHHHHh-cccCccEEEEECCCchh-hhhhhccCCceeeeccc-CCHHHH------H
Confidence 788999999999999777777777777666 34789999999999765 233443 5666776654 332111 1
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 300 DYLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 300 d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
..+ ..... ..+.+|||+++.++++.
T Consensus 346 ~ll--------~~l~~-~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 346 TGF--------DWITD-YQGKTVWFVPSIKAGND 370 (618)
T ss_dssp SSC--------HHHHH-CCSCEEEECSSHHHHHH
T ss_pred HHH--------HHHHh-CCCCEEEEECChhHHHH
Confidence 111 11111 36789999998877643
No 15
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.39 E-value=4.4e-14 Score=148.69 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhc-CCCCEEEecCCCCcceeeccCCCCc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYF-FEAPIFTIPGRTFPVEVLYTKEPET 299 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF-~~~pvi~Ipgr~fpV~~~yl~~~~~ 299 (558)
+...+.+|+||+|..+...+..++.++.+. .+++.++|+||||+.... .++. +..|++.+++. +|.. ...
T Consensus 91 ~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~-~~~~~~~~~i~~~~~~-~~~~------~~~ 161 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGTT-EAFPPSNSPIIDEETR-IPDK------AWN 161 (431)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTCC-CSSCCCSSCCEEEECC-CCSS------CCS
T ss_pred ccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcch-hhhcCCCCceeecccc-CCHH------HHH
Confidence 778899999999998766677777777765 457899999999997642 2222 24566555543 2211 111
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecChHHHH
Q psy12726 300 DYLDASLITVMQIHLREPPGDVLLFLTGKLDVR 332 (558)
Q Consensus 300 d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~ 332 (558)
..+. .. ....|.+|||+++.++++
T Consensus 162 ~~~~--------~l-~~~~~~~lVF~~~~~~~~ 185 (431)
T 2v6i_A 162 SGYE--------WI-TEFDGRTVWFVHSIKQGA 185 (431)
T ss_dssp SCCH--------HH-HSCSSCEEEECSSHHHHH
T ss_pred HHHH--------HH-HcCCCCEEEEeCCHHHHH
Confidence 1111 11 123678999999887764
No 16
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=133.38 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhHhcCccee----cCCCchHHHHHHHHc----CCcc--eeE------------eeCCCCCceeeeCCe
Q psy12726 106 RAQDVRKQLLGIMDRHKLDVV----SAGKNTVRVQKAVCS----GFFR--NAA------------KKDPQEGYRTLVDSQ 163 (558)
Q Consensus 106 ~i~~~r~qL~~~l~~~~~~~~----gsgkst~i~~~lL~~----g~~~--~~A------------~~r~~~~~~~~~~~~ 163 (558)
++....+++...+.+.+..++ ||||++.+...++.. +... .+. +.+....+....+..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 344556677777766665444 899999776655442 2110 111 011111222334566
Q ss_pred EEEEecCCCCCCCCCCEEEEEeeeeccccccccccccChHHHHHhcCcccccCCcccccccccceecccccccccCCCch
Q psy12726 164 VVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLQRTNRISFPP 243 (558)
Q Consensus 164 v~~ihp~s~l~~~~~~~ii~~~l~~T~~~~lr~~~~i~~~wL~~~~~~~~~~~~~~~l~~~~~vi~De~her~~~~D~ll 243 (558)
++|..+...... .+..-|. ++|.|.+++.+.. . +.+.+++++||+|+|+++.|+++
T Consensus 141 ~g~~~~~~~~~~-~~~~~Iv---v~Tpg~l~~~l~~---~-----------------l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 141 CGYSVRFESILP-RPHASIM---FCTVGVLLRKLEA---G-----------------IRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp EEEEETTEEECC-CSSSEEE---EEEHHHHHHHHHH---C-----------------CTTCCEEEECCTTSCCHHHHHHH
T ss_pred EEEeechhhccC-CCCCeEE---EECHHHHHHHHHh---h-----------------hcCCcEEEEECCccCCcchHHHH
Confidence 777666555421 1233333 5787766655221 1 77889999999999999999999
Q ss_pred hhhHHHhhcCCCeeEEEEecccchHHHhhhcCCCCEEEe
Q psy12726 244 GLLKQAVKKRPEIKLIVTSATLDAVKFSSYFFEAPIFTI 282 (558)
Q Consensus 244 ~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~~~pvi~I 282 (558)
..++.++..+|+.++|+||||++.+.|.+||+++|+++|
T Consensus 197 ~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred HHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 999999999999999999999999999999999999986
No 17
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.7e-13 Score=151.77 Aligned_cols=49 Identities=22% Similarity=0.067 Sum_probs=46.1
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
|..+||+|++.++..+++....|..||++||++++.+|.||++++||+.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 7789999999999999888888999999999999999999999999994
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.34 E-value=2.6e-12 Score=133.88 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=49.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++..++.++++...+|..+|++||+++|.+|+||+|.+||+.+.-
T Consensus 291 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 344 (412)
T 3fht_A 291 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344 (412)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCC
Confidence 558889999999999999988888999999999999999999999999988753
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.33 E-value=3e-12 Score=131.11 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=117.2
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccchHH---HhhhcCCCCEEEecCCCCcceeeccCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDAVK---FSSYFFEAPIFTIPGRTFPVEVLYTKE 296 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~~~---F~~yF~~~pvi~Ipgr~fpV~~~yl~~ 296 (558)
+..++.+++||+|... +.++.- .++.++. ..++.++|+||||+..+. +..|+++...+..... .+++..|...
T Consensus 145 ~~~~~~iIiDEah~~~-~~~~~~-~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 221 (367)
T 1hv8_A 145 LKNVKYFILDEADEML-NMGFIK-DVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEV 221 (367)
T ss_dssp TTSCCEEEEETHHHHH-TTTTHH-HHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEEC
T ss_pred cccCCEEEEeCchHhh-hhchHH-HHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEe
Confidence 6778999999999864 333333 3344443 457899999999998753 3567777666555433 4666666554
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCC
Q psy12726 297 PETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEG 376 (558)
Q Consensus 297 ~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (558)
...+.+... ..+. ....+.+|||.++..++....
T Consensus 222 ~~~~~~~~l----~~~l-~~~~~~~lvf~~~~~~~~~l~----------------------------------------- 255 (367)
T 1hv8_A 222 NENERFEAL----CRLL-KNKEFYGLVFCKTKRDTKELA----------------------------------------- 255 (367)
T ss_dssp CGGGHHHHH----HHHH-CSTTCCEEEECSSHHHHHHHH-----------------------------------------
T ss_pred ChHHHHHHH----HHHH-hcCCCcEEEEECCHHHHHHHH-----------------------------------------
Confidence 444444332 2222 255678899998877654321
Q ss_pred ccccccccceecCCCcccccCCCcchhhhhhhhhHHHHHHHhhcCCchhhhhhccccccCCCcchhhhhhhhcccccccc
Q psy12726 377 YRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYN 456 (558)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (558)
T Consensus 256 -------------------------------------------------------------------------------- 255 (367)
T 1hv8_A 256 -------------------------------------------------------------------------------- 255 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccccchhhhhHHHHHHHhhhcCCCCCCceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCe
Q psy12726 457 KYEEPNAWRISREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGI 536 (558)
Q Consensus 457 ~~~~~~~~~~~~~ei~~~~~~l~~~~~~~~~~~~~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV 536 (558)
+.|.+ ..+.+..+||.++..++.++++....|..+|++||+++|++|+||++
T Consensus 256 -------------------~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 256 -------------------SMLRD---------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp -------------------HHHHH---------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCC
T ss_pred -------------------HHHHh---------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccC
Confidence 11111 12568889999999999988887778999999999999999999999
Q ss_pred EEEEcCChh
Q psy12726 537 FYVVDPFDI 545 (558)
Q Consensus 537 ~~VID~g~~ 545 (558)
.+||+.+.-
T Consensus 308 ~~Vi~~~~~ 316 (367)
T 1hv8_A 308 NCVINYHLP 316 (367)
T ss_dssp SEEEESSCC
T ss_pred CEEEEecCC
Confidence 999998743
No 20
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.30 E-value=1.6e-12 Score=143.33 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=62.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccchHHHhhhc-CCCCEEEecCCCCcceeeccCCCCc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDAVKFSSYF-FEAPIFTIPGRTFPVEVLYTKEPET 299 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF-~~~pvi~Ipgr~fpV~~~yl~~~~~ 299 (558)
+..++.+|+||+|..+...+..++.++..+. +++.++|+||||+..... ++. ...|++.+... +|.. ...
T Consensus 330 l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~-~~~~~~~~i~~v~~~-~~~~------~~~ 400 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTSD-PFPDTNSPVHDVSSE-IPDR------AWS 400 (673)
T ss_dssp CCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCC-SSCCCSSCEEEEECC-CCSS------CCS
T ss_pred cccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhhh-hhcccCCceEEEeee-cCHH------HHH
Confidence 7788999999999997777788888888764 467899999999976522 222 24566655542 1111 111
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 300 DYLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 300 d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
..+.. .....+.+|||+++.++++.
T Consensus 401 ~~l~~---------l~~~~~~~lVF~~s~~~~e~ 425 (673)
T 2wv9_A 401 SGFEW---------ITDYAGKTVWFVASVKMSNE 425 (673)
T ss_dssp SCCHH---------HHSCCSCEEEECSSHHHHHH
T ss_pred HHHHH---------HHhCCCCEEEEECCHHHHHH
Confidence 11111 11247889999998877643
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.30 E-value=4.4e-12 Score=141.76 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=27.1
Q ss_pred eEEEec--------cCCCChHHHHhhcccCCC-CCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPV--------YSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpL--------hs~l~~~~Q~~vf~~~~~-g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
+.+..| ||+++.++|.++++.... |.++|+|||++||++|+||+|.+||+.+.-.
T Consensus 427 ~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~ 490 (696)
T 2ykg_A 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 490 (696)
T ss_dssp CCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC-
T ss_pred cceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCC
Confidence 556666 679999999999999987 9999999999999999999999999976543
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.29 E-value=1.2e-11 Score=134.90 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=53.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHHhhccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVRQAKYH 553 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~~~~~~ 553 (558)
+.+.++||.++.+++.++++....|..+|||||++++.+|.+|||++||..+.-+....-|+
T Consensus 292 ~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Q 353 (591)
T 2v1x_A 292 IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 353 (591)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHH
T ss_pred CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHH
Confidence 56899999999999999988888899999999999999999999999999886554444444
No 23
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.28 E-value=4.9e-12 Score=139.11 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=47.9
Q ss_pred eEEEeccCCCChH---HHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhH
Q psy12726 492 LIILPVYSALPSE---MQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEV 547 (558)
Q Consensus 492 ~~vlpLhs~l~~~---~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~ 547 (558)
+.+.++||+|+++ +|.+.|+. ++|.++|+|||||||+||+| +|++|||+|..|.
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~-~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFND-PNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHC-TTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred CCeeeeeccCCHHHHHHHHHHHHc-cCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc
Confidence 6689999999998 67788887 66899999999999999999 9999999997653
No 24
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.27 E-value=1.4e-12 Score=137.41 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=37.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhH
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEV 547 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~ 547 (558)
+.+..+|| +++.++++....|..+|+|||+++|.+|+|| |.+|||+|..+.
T Consensus 202 ~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~ 252 (440)
T 1yks_A 202 KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFK 252 (440)
T ss_dssp CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEE
T ss_pred CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccce
Confidence 56889999 4566777777789999999999999999999 999999997653
No 25
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.26 E-value=3.6e-12 Score=132.98 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=48.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++....|..+|+|||++++.+|+||+|.+||+.+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 301 FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 56888999999999998888777888999999999999999999999999874
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.9e-12 Score=139.22 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++...+|..+|++||+++|++|.||+|.+||..+.
T Consensus 382 ~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~ 434 (508)
T 3fho_A 382 HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 434 (508)
T ss_dssp CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC---
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECC
Confidence 55788999999999999988888899999999999999999999999997663
No 27
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.23 E-value=4.7e-11 Score=125.74 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=48.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++....|..+|+|||++|+.+|.||+|.+||+.+.
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~ 377 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM 377 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC
Confidence 56889999999999999988878899999999999999999999999998764
No 28
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.21 E-value=3.4e-11 Score=124.60 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=48.4
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++.+++.++++...+|..+|++||+++|.+|.||+|.+||..+.
T Consensus 275 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 55788999999999998888777899999999999999999999999998774
No 29
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.20 E-value=3.4e-11 Score=125.07 Aligned_cols=53 Identities=8% Similarity=0.168 Sum_probs=48.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++....|..+|++||+++|.+|+||++.+||+.+.
T Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 283 YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 55888999999999999988888899999999999999999999999999774
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.20 E-value=2.8e-11 Score=130.34 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhhHH
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIEVR 548 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~~~ 548 (558)
+.+.++||+++.+++.++++....|..+|+|||++++.+|.+|||++||..+.-+..
T Consensus 261 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 261 ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 568999999999999988887778899999999999999999999999998854433
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.20 E-value=5.3e-12 Score=130.71 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=0.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++..++.++++...+|..+|++||++++.+|+||++.+||+.+.-
T Consensus 284 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p 337 (394)
T 1fuu_A 284 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp ------------------------------------------------------
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 678899999999999999998888999999999999999999999999998743
No 32
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.17 E-value=3.7e-11 Score=125.48 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=48.9
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++.+++.++++....|..+|++||+++|.+|+||+|.+||+.+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~ 353 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 353 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC
Confidence 56889999999999999988777889999999999999999999999999874
No 33
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.17 E-value=5.7e-11 Score=120.10 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=47.1
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+..+||.++..++.++++....|..+|++||+++|.+|+||+|.+||+.+.
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 567899999999999988878899999999999999999999999999874
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=131.29 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++..++.++++....|..+|+|||++++.+|.||+|.+||+.+.-
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p 411 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411 (479)
T ss_dssp ------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCC
Confidence 568899999999999999999999999999999999999999999999987744
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.08 E-value=1.1e-10 Score=127.04 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=49.3
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.+++.++.++++....|..+|+|||++++.+|.||+|.+||..+.-
T Consensus 367 ~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 367 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp SCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCC
Confidence 668899999999999999887778999999999999999999999999998743
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=8.9e-11 Score=128.32 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=49.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.+++.++.++++....|..+|+|||++|+.+|.||+|.+||..+.-
T Consensus 316 ~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 316 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp SCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred CcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC
Confidence 568899999999999988877777889999999999999999999999997744
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=130.09 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=45.1
Q ss_pred ceEEEeccCC--------CChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 491 ELIILPVYSA--------LPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 491 ~~~vlpLhs~--------l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
.+.+..+||. |+..++.++++....|..+|+|||++|+.+|+||+|.+||..+.
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~ 491 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL 491 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESC
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCC
Confidence 4789999999 99999999999888899999999999999999999999997653
No 38
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.99 E-value=1.4e-10 Score=109.68 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=51.3
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
+.+.+|||.++..+|.++++....|.++|+||||+|+++|+||+|.+||+.|.-+
T Consensus 56 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~ 110 (212)
T 3eaq_A 56 HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPD 110 (212)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCc
Confidence 6689999999999999999988899999999999999999999999999998643
No 39
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.98 E-value=2.5e-10 Score=113.58 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=51.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChhh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~~ 546 (558)
+.+.+|||.+++.+|.++|+....|.++|+||||+||++|+||+|.+||+.+.-+
T Consensus 53 ~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~ 107 (300)
T 3i32_A 53 HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD 107 (300)
T ss_dssp CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC
Confidence 6789999999999999999998899999999999999999999999999998643
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.90 E-value=2.9e-09 Score=124.42 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=45.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEE
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVV 540 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VI 540 (558)
+.+..+||.++..++.++++....|..+|+|||+|+|++|.||++.+||
T Consensus 839 ~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 839 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp SCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 5688999999999999888877789999999999999999999999999
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=3.7e-09 Score=111.89 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=45.1
Q ss_pred eEEEeccC--------CCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYS--------ALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs--------~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+|| .++..++.++++....|..+|+|||++++.+|++|++.+||..+.
T Consensus 386 ~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC
T ss_pred CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC
Confidence 67889999 999999998888777788899999999999999999999998774
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.86 E-value=5.7e-09 Score=125.73 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=45.6
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
|-..||+|++.+++.|.+....|..+|++||+.++.+|.+|.+++||..
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~ 1264 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD 1264 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec
Confidence 7778999999999999888788999999999999999999999999964
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.86 E-value=1.4e-09 Score=113.48 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=37.6
Q ss_pred eEEE-eccCCCChHHHHhhcccCCCCCeEEEEe----eccccceeeeCC-eEEEEcCChh
Q psy12726 492 LIIL-PVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IFYVVDPFDI 545 (558)
Q Consensus 492 ~~vl-pLhs~l~~~~Q~~vf~~~~~g~rkVIla----TNIAETSiTIpd-V~~VID~g~~ 545 (558)
+.+. .+||. +++ ++....|..+|++| |+++|.+|.||+ |.+||+.+.-
T Consensus 277 ~~~~~~~h~~-----~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p 330 (414)
T 3oiy_A 277 FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 330 (414)
T ss_dssp CCEEESSSCH-----HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCC
T ss_pred CceehhhcCc-----chH-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCC
Confidence 4565 78885 222 44444688999999 999999999999 9999987754
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.86 E-value=4.2e-10 Score=125.70 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=48.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++.+++.++++...+|..+|+|||+++|.+|.||||.+||..+..
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~ 667 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPE 667 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCC
Confidence 668899999999999999888888999999999999999999999999976643
No 45
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.76 E-value=9.7e-09 Score=111.19 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=14.2
Q ss_pred EEeccCCCChHHHHhhcccCCC-CCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~-g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
...+||+++.+++.++++.... |..+|+|||++|+.+|+||+|.+||..+.
T Consensus 429 ~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 429 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -------------------------CCEEEEEC-----------CEEEEETC
T ss_pred CcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 4566889999999999999888 99999999999999999999999998654
No 46
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.75 E-value=1.4e-08 Score=109.88 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=26.2
Q ss_pred EEeccCCCChHHHHhhcccCCC-CCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~-g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
...+||+++.+++.++++.... |..+|+|||++|+.+|.||+|.+||..+.
T Consensus 428 ~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 428 RTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp ------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred CcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 4556789999999999999888 88999999999999999999999998654
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.74 E-value=6.7e-09 Score=120.60 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=39.7
Q ss_pred eEEE-eccCCCChHHHHhhcccCCCCCeEEEEe----eccccceeeeCC-eEEEEcCChhh
Q psy12726 492 LIIL-PVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDG-IFYVVDPFDIE 546 (558)
Q Consensus 492 ~~vl-pLhs~l~~~~Q~~vf~~~~~g~rkVIla----TNIAETSiTIpd-V~~VID~g~~~ 546 (558)
+.+. .+||. +++ ++....|..+|+|| ||++|.+|+||+ |.+||+.|.-+
T Consensus 334 ~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 334 FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 5566 89983 333 55555688999999 999999999999 99999998654
No 48
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=98.73 E-value=1.9e-09 Score=105.00 Aligned_cols=111 Identities=86% Similarity=1.367 Sum_probs=101.0
Q ss_pred HHHHHHHHhhhhhcccceecCCCchHHHHHHhhhhhhhcccccCCCCCccccccccceecCCCcccccCCCcchhhhhhh
Q psy12726 329 LDVRKQLLGIMDRHKLDVVSAGKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELV 408 (558)
Q Consensus 329 ~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 408 (558)
.++++|+..++.+.+....+++.+...+++.+++||+.+++..++.+.|.+..+...+++||+|.+++..|+|++|+|++
T Consensus 142 ~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv 221 (270)
T 3i4u_A 142 QDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELV 221 (270)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehh
Confidence 46888888999888877777788888999999999999999988888999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCchhhhhhccccccCCCc
Q psy12726 409 QTTKEYMREVTSIDPKWLVEFAPAFFKFSDP 439 (558)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~~ 439 (558)
.+.+.|+..+..++++|+.+++|.+|+..+-
T Consensus 222 ~Tsk~y~r~vt~I~p~wL~~~ap~~~~~~~~ 252 (270)
T 3i4u_A 222 LTTKEYMREVTTIDPRWLVEFAPAFFKVLEV 252 (270)
T ss_dssp ESSSEEEEEEEECCHHHHHHHCTTTEECC--
T ss_pred hhhHhHHHhccccCHHHHHHHhHHHhccccc
Confidence 9999999999999999999999999877654
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.60 E-value=4.9e-08 Score=117.70 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=43.6
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEc
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVD 541 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID 541 (558)
|-..||+|+.+++..|.+...+|..||++||+.++.+|.+|.+++||.
T Consensus 381 va~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 381 FAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp EEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe
Confidence 555799999999998877777899999999999999999999999994
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.59 E-value=1e-07 Score=109.56 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=20.0
Q ss_pred EEeccCCCChHHHHhhcccCCC-CCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~-g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
...+||+++..+|.++++.... |..+|+|||++|+++|+||+|.+||..+.
T Consensus 670 ~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 4567999999999999998887 88999999999999999999999998653
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.59 E-value=9.7e-08 Score=108.12 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=19.2
Q ss_pred EEeccCCCChHHHHhhcccCCC-CCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPP-GSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~-g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
...+||+++..++.++++.... |..+|+|||++|+++|.||+|.+||..+.
T Consensus 670 ~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 670 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp ------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred CcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 4567899999999999998888 88999999999999999999999998654
No 52
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.41 E-value=2.9e-08 Score=115.22 Aligned_cols=49 Identities=14% Similarity=-0.022 Sum_probs=35.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEe----eccccceeeeCCe-EEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIA----TNIAETSLTIDGI-FYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIla----TNIAETSiTIpdV-~~VID~g~~ 545 (558)
+.+.++||.+... .+-|+ .|..+|+|| ||+||.+|+||+| .+||+.|.-
T Consensus 299 ~~v~~lhg~~~~~--l~~F~---~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 299 FRIGIVTATKKGD--YEKFV---EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SCEEECTTSSSHH--HHHHH---HTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cCeeEEeccHHHH--HHHHH---cCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 5688899998422 33465 488899999 9999999999995 999999965
No 53
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.31 E-value=1.1e-06 Score=79.14 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=49.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
+.+..+||.++..++.++++....|..+|++||++++.++.+|++.+||+.+.-
T Consensus 55 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p 108 (165)
T 1fuk_A 55 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 108 (165)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCC
Confidence 568899999999999999888888999999999999999999999999998753
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.24 E-value=1.3e-06 Score=93.67 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred EEEeccCCCChHHHHhhcccCCCCCeEEEEee-ccccceeeeCCeEEEEcCC
Q psy12726 493 IILPVYSALPSEMQTRIFEAAPPGSRKVVIAT-NIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 493 ~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaT-NIAETSiTIpdV~~VID~g 543 (558)
.+..+||.++..++.++++...+|..+|+||| +++|++|.||+|.+||-.+
T Consensus 373 ~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~ 424 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAH 424 (510)
T ss_dssp SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESS
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeC
Confidence 58899999999998888776667888899999 9999999999999999754
No 55
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.18 E-value=7.1e-06 Score=90.51 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=47.8
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.+++.++.++++....|..+|++|||+++.++.||+|.+||.++.
T Consensus 464 i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 464 IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 55778999999999999977667788999999999999999999999999874
No 56
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.14 E-value=4.4e-06 Score=75.92 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=48.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.+++.++.++++....|..+|++||++++.+|+||+|.+||+.+.
T Consensus 59 ~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 59 HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 111 (175)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC
Confidence 56889999999999998888777888999999999999999999999998763
No 57
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.14 E-value=8.9e-06 Score=89.70 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=47.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.+++.++.++++....|..+|++|||+++.++.||+|.+||.++.
T Consensus 470 i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 470 IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 55778999999999999977666788899999999999999999999999874
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.12 E-value=5.5e-07 Score=95.53 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred EEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 494 ILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 494 vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+..+||.++..++.++++....|..+|+|||++++++|.||++.+||..+
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEEC
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEEC
Confidence 44689999999999888877778899999999999999999999999754
No 59
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.11 E-value=2.2e-06 Score=79.19 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=48.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++....|..+|++||++|+.+|.||+|.+||+.+.
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~ 131 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM 131 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC
Confidence 56888999999999998888777788899999999999999999999999764
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.05 E-value=5.4e-06 Score=74.42 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=48.5
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++...+|..+|++||++++.+|.+|+|.+||+.+.
T Consensus 60 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 60 YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL 112 (163)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC
Confidence 56889999999999998888777889999999999999999999999998764
No 61
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.02 E-value=8.3e-06 Score=73.95 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=48.6
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++....|..+|++||++++.+|.||+|.+||..+.
T Consensus 56 ~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 56 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC
Confidence 56888999999999999888777899999999999999999999999999774
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.94 E-value=7.7e-06 Score=75.11 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=34.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCCh
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFD 544 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~ 544 (558)
+.+..+||.++..++.++++...+|..+|++||++++.+|.||++.+||+.+.
T Consensus 71 ~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 71 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC
T ss_pred CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC
Confidence 56889999999999988888777788899999999999999999999998764
No 63
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.97 E-value=3.3e-06 Score=76.38 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=50.4
Q ss_pred ceEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCChh
Q psy12726 491 ELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDI 545 (558)
Q Consensus 491 ~~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g~~ 545 (558)
.+.+..+||.++..++.++++....|..+|++||++++.+|.||+|.+||+.+.-
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p 108 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMP 108 (170)
Confidence 3678899999999999999998888999999999999999999999999997744
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.65 E-value=0.00034 Score=76.19 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=37.2
Q ss_pred EEeccCCCCh--HHHHhhcccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 494 ILPVYSALPS--EMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 494 vlpLhs~l~~--~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+..+||.++. ++..+-|+....+.+.|+++|++++|+|.||+|.+||-..
T Consensus 474 ~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~ 525 (590)
T 3h1t_A 474 VARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLAR 525 (590)
T ss_dssp EEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEES
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEe
Confidence 6778998764 2223556664444556899999999999999999999643
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.62 E-value=0.00016 Score=78.56 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=61.1
Q ss_pred cccccceecccccccccCCCchhhhHHHhhc------CC----------------CeeEEEEecccch--HHHhhhcCCC
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKK------RP----------------EIKLIVTSATLDA--VKFSSYFFEA 277 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~------r~----------------~lKlIlMSATl~~--~~F~~yF~~~ 277 (558)
..-.++++||...|.+..=-+-.=|-+.+.. .+ --||.-||+|+.. +.|.+.| +.
T Consensus 354 ~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l 432 (822)
T 3jux_A 354 MNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GM 432 (822)
T ss_dssp ETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CC
T ss_pred ECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CC
Confidence 3447889999999976543333223333331 11 1589999999965 5677766 58
Q ss_pred CEEEecCCCCcce------eeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHH
Q psy12726 278 PIFTIPGRTFPVE------VLYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDV 331 (558)
Q Consensus 278 pvi~Ipgr~fpV~------~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei 331 (558)
.++.||... |+. .+|. +..+...+....+...|.. ...+|||....+..
T Consensus 433 ~vv~IPtnk-p~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~~--gqpVLVFt~S~e~s 487 (822)
T 3jux_A 433 EVVVIPTHK-PMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYKK--GQPVLVGTTSIEKS 487 (822)
T ss_dssp CEEECCCSS-CCCCEECCCEEES--SHHHHHHHHHHHHHHHHHH--TCCEEEEESSHHHH
T ss_pred eEEEECCCC-CcceeecCcEEEe--cHHHHHHHHHHHHHHHhhC--CCCEEEEECCHHHH
Confidence 899998643 321 1222 2233444444444444433 23589998877655
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.38 E-value=0.00064 Score=75.22 Aligned_cols=61 Identities=26% Similarity=0.176 Sum_probs=45.0
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeC--------CeEEEEcCChhhHHhhcccc
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTID--------GIFYVVDPFDIEVRQAKYHR 554 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIp--------dV~~VID~g~~~~~~~~~~~ 554 (558)
+..-.||+.++..+...+.+...+| .|.||||+|--++-|+ |+.+||.+.+-..+....||
T Consensus 457 i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr 525 (844)
T 1tf5_A 457 IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQL 525 (844)
T ss_dssp CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHH
T ss_pred CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhh
Confidence 5566789998766655444332233 6999999999999999 89999999876655555554
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.33 E-value=9.8e-05 Score=69.54 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=41.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccch---HHHhhhcCCCCEEEecCCCCcc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDA---VKFSSYFFEAPIFTIPGRTFPV 289 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~---~~F~~yF~~~pvi~Ipgr~fpV 289 (558)
+...+.+++||+|. ..+.++.- .+..++. .+++.++|+||||+.. +.+.+|++++..|.|+++.+++
T Consensus 153 ~~~~~~iViDEah~-~~~~~~~~-~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 223 (224)
T 1qde_A 153 TDKIKMFILDEADE-MLSSGFKE-QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 223 (224)
T ss_dssp CTTCCEEEEETHHH-HHHTTCHH-HHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--------
T ss_pred hhhCcEEEEcChhH-HhhhhhHH-HHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCccCC
Confidence 66789999999994 33444433 3344444 4568899999999987 3345588777788888877665
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.17 E-value=0.00049 Score=79.19 Aligned_cols=52 Identities=8% Similarity=-0.072 Sum_probs=45.4
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCC--eEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGS--RKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~--rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||.++..+..++++....|. .+|+|||++++++|.||++.+||...
T Consensus 529 ~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d 582 (968)
T 3dmq_A 529 IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFD 582 (968)
T ss_dssp CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEec
Confidence 67899999999998888776555665 89999999999999999999999754
No 69
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.93 E-value=0.0036 Score=69.25 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=31.7
Q ss_pred eEEEeccCCCChHHHHhhcccCCCCCeEEEEeeccccceeeeCCe
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGI 536 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g~rkVIlaTNIAETSiTIpdV 536 (558)
+..-.||+..+..+...+-+...+| .|.||||+|--++-|+.+
T Consensus 466 i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 466 IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 4566789987766655444433345 599999999999999983
No 70
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.83 E-value=0.00066 Score=64.01 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=39.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccch--HHHhh-hcCCCCEEE
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDA--VKFSS-YFFEAPIFT 281 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~--~~F~~-yF~~~pvi~ 281 (558)
+...+.+++||+| +..+.++.-.+.+.+...+++.++|+||||+.. ..|.+ |+.++-.|.
T Consensus 165 ~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 165 LRSITYLVIDEAD-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CTTCCEEEECCHH-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred cccceEEEEECHH-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 6778999999999 444555544443333335678999999999985 44544 555544443
No 71
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.62 E-value=0.0071 Score=67.14 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=43.0
Q ss_pred eeEEEEecccch--HHHhhhcCCCCEEEecCCCCccee------eccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecC
Q psy12726 256 IKLIVTSATLDA--VKFSSYFFEAPIFTIPGRTFPVEV------LYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTG 327 (558)
Q Consensus 256 lKlIlMSATl~~--~~F~~yF~~~pvi~Ipgr~fpV~~------~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g 327 (558)
-||.-|++|+.. +.|.+.| +..++.||. ..|+.- +|. +..+...+.+..+...|.. ...+|||...
T Consensus 396 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPt-n~p~~R~d~~d~v~~--t~~~K~~al~~~i~~~~~~--gqpvLVft~S 469 (922)
T 1nkt_A 396 DKLAGMTGTAQTEAAELHEIY-KLGVVSIPT-NMPMIREDQSDLIYK--TEEAKYIAVVDDVAERYAK--GQPVLIGTTS 469 (922)
T ss_dssp SEEEEEESCCGGGHHHHHHHH-CCEEEECCC-SSCCCCEECCCEEES--CHHHHHHHHHHHHHHHHHT--TCCEEEEESC
T ss_pred hhhhccccCchhHHHHHHHHh-CCCeEEeCC-CCCcccccCCcEEEe--CHHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 389999999976 5677766 577999997 456532 232 2223333434444443432 2358999887
Q ss_pred hHHH
Q psy12726 328 KLDV 331 (558)
Q Consensus 328 ~~ei 331 (558)
.+..
T Consensus 470 ie~s 473 (922)
T 1nkt_A 470 VERS 473 (922)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 72
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.61 E-value=0.0012 Score=62.28 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=41.5
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCC-CeeEEEEecccchH---HHhhhcCCCCEEEe
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRP-EIKLIVTSATLDAV---KFSSYFFEAPIFTI 282 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~-~lKlIlMSATl~~~---~F~~yF~~~pvi~I 282 (558)
+...+.+++||+|.- .+.......++.++...| +.++|+||||+..+ .+.+||+++..|.+
T Consensus 164 ~~~~~~lViDEah~~-~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 164 PGSIRLFILDEADKL-LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GGGCCEEEESSHHHH-HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccCCEEEeCCchHh-hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 567789999999943 333323445566665444 78899999999764 34557777656654
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.43 E-value=0.0023 Score=61.37 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=43.0
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccchH--HH-hhhcCCCCEEEec
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDAV--KF-SSYFFEAPIFTIP 283 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~~--~F-~~yF~~~pvi~Ip 283 (558)
+...+.+++||+| +..+.++.-.+. .++. .+++.++|+||||+..+ .| ..|+.++..|.|+
T Consensus 184 l~~~~~lViDEah-~l~~~~~~~~l~-~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 184 LRALKYLVMDEAD-RILNMDFETEVD-KILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CTTCCEEEECSHH-HHHHTTCHHHHH-HHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccccCEEEEcChh-hhhccChHHHHH-HHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 6678899999999 666667655543 4444 44578999999999863 33 4477666566553
No 74
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.007 Score=67.32 Aligned_cols=115 Identities=10% Similarity=0.156 Sum_probs=78.5
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhcc---CChHHHHHHHhHhcC-CCCccCChhHHHHHHHHHh---h-hcC-C-CC
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHL---QCSDEVLTIVSMLSV-QNVFYRPKDKQALADQKKA---K-FNQ-M-EG 72 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~---~c~~~~~~iaA~Ls~-~~~f~~~~~~~~~~~~~~~---~-~~~-~-~s 72 (558)
+.+|++ +.|+.+|++|++|+|++.+... .|..+++.++|+.++ .++|.++.+.....+.... . +.. . ..
T Consensus 493 ~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~ 572 (715)
T 2va8_A 493 FALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEE 572 (715)
T ss_dssp EEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSH
T ss_pred EeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccc
Confidence 478999 8999999999999999999887 799999998887775 7788776554433222110 0 000 0 00
Q ss_pred -------CHHHHHHHHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHHh
Q psy12726 73 -------DHITLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIM 118 (558)
Q Consensus 73 -------D~l~~l~~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~l 118 (558)
.++...-++++|.+...-..+|.+..+....+..+.+....|...+
T Consensus 573 ~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~ 625 (715)
T 2va8_A 573 DEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSA 625 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHH
Confidence 2333444467887766667889888887777766666665555554
No 75
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0029 Score=59.81 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhc-CCCeeEEEEecccch--HHHhh-hcCCCCEEEecCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKK-RPEIKLIVTSATLDA--VKFSS-YFFEAPIFTIPGR 285 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~-r~~lKlIlMSATl~~--~~F~~-yF~~~pvi~Ipgr 285 (558)
+...+.+++||+| +..+.++.- .+..++.. .++.++|+||||+.. ..|.+ |+.++..|.|+++
T Consensus 169 ~~~~~~lViDEah-~~~~~~~~~-~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 169 ATDLQMLVLDEAD-RILDMGFAD-TMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp CTTCCEEEETTHH-HHHHTTTHH-HHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred cccccEEEEeChH-HHhcCCcHH-HHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 5677899999999 555555433 33444443 357889999999976 34544 6777777887764
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.32 E-value=0.002 Score=59.51 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=39.5
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhc-CCCeeEEEEecccch--HHHh-hhcCCCCEEEe
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKK-RPEIKLIVTSATLDA--VKFS-SYFFEAPIFTI 282 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~-r~~lKlIlMSATl~~--~~F~-~yF~~~pvi~I 282 (558)
+...+.+++||+|.- .+.++ ...+..++.. +++.++|+||||+.. +.|. .|++++.+|.+
T Consensus 142 ~~~~~~iViDEah~~-~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 142 LSRVEVAVLDEADEM-LSMGF-EEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp CTTCSEEEEESHHHH-HHTTC-HHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhceEEEEEChhHh-hccch-HHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 667899999999953 23333 2334455543 457899999999985 3454 46666555554
No 77
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.20 E-value=0.0027 Score=60.44 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=42.0
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccch--HHHhh-hcCCCCEEEecC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDA--VKFSS-YFFEAPIFTIPG 284 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~--~~F~~-yF~~~pvi~Ipg 284 (558)
+...+.+++||+| +..+.++.- .++.++. .+++.++|+||||+.. ..|.+ |+.++-.|.+..
T Consensus 174 ~~~~~~lViDEah-~l~~~~~~~-~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 174 LRRTTYLVLDEAD-RMLDMGFEP-QIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp CTTCCEEEETTHH-HHHHTTCHH-HHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred cccccEEEEeCHH-HHhhhCcHH-HHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 6778999999999 434444433 3344454 4578899999999975 44554 666655677654
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.06 E-value=0.0038 Score=58.30 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=38.9
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcC-CCeeEEEEecccchH---HHhhhcCCCCEEEe
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKR-PEIKLIVTSATLDAV---KFSSYFFEAPIFTI 282 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r-~~lKlIlMSATl~~~---~F~~yF~~~pvi~I 282 (558)
+...+.+++||+|.-. +.++ ...++.++... ++.++|+||||+..+ ...+|+.++-.|.+
T Consensus 148 ~~~~~~lViDEah~~~-~~~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 148 VHTAHILVVDEADLML-DMGF-ITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp GGGCCEEEECSHHHHH-HTTC-HHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cCcceEEEEcCchHHh-hhCh-HHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 6678899999999632 3333 33345555543 578999999999763 23557766544433
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.01 E-value=0.0032 Score=59.66 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=38.0
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccch--HHH-hhhcCCCCEEEe
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDA--VKF-SSYFFEAPIFTI 282 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~--~~F-~~yF~~~pvi~I 282 (558)
+...+.+++||+|.-. +.++. ..+..++. ..++.++|+||||+.. ..+ ..|+.++..|.|
T Consensus 171 ~~~~~~lViDEah~~~-~~~~~-~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 171 PKWIKMFVLDEADEML-SRGFK-DQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp STTCCEEEEESHHHHH-HTTCH-HHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred cccCcEEEECCchHhh-ccCcH-HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 5677899999999532 33332 22334443 3467899999999975 334 446666555554
No 80
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.93 E-value=0.034 Score=61.55 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=75.5
Q ss_pred CCCCcc-cccccCccchhhHHHHHHhhcc--CChHHHHHHHhHhcC-CCCccCChhHHHHHHHH-H--hhh-cCC--CC-
Q psy12726 4 LVVTPI-SQMAEFPLEPNLSKMLIMSVHL--QCSDEVLTIVSMLSV-QNVFYRPKDKQALADQK-K--AKF-NQM--EG- 72 (558)
Q Consensus 4 ~~lT~l-~~ma~lPl~PrlakmLl~~~~~--~c~~~~~~iaA~Ls~-~~~f~~~~~~~~~~~~~-~--~~~-~~~--~s- 72 (558)
+++|++ +.|+.+|++|+.|+|++.+... .|...++.++|+.++ .+++.++.+ ....+.. + ..+ ... ..
T Consensus 474 ~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~ 552 (702)
T 2p6r_A 474 LAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSV 552 (702)
T ss_dssp EEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTST
T ss_pred eccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhh
Confidence 578999 8999999999999999999988 899999999888776 668887766 2222221 1 111 111 11
Q ss_pred ------CHHHHHHHHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHH
Q psy12726 73 ------DHITLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGI 117 (558)
Q Consensus 73 ------D~l~~l~~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~ 117 (558)
.+....-++++|.+...-...|.+..+....+..+.+....+...
T Consensus 553 ~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a 603 (702)
T 2p6r_A 553 EYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNA 603 (702)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHH
Confidence 344444556888766555677877777665555555544444444
No 81
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.92 E-value=0.017 Score=61.16 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=39.2
Q ss_pred eEEEeccCCCChHHHHhhcccCCCC--CeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRIFEAAPPG--SRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~vf~~~~~g--~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||+++.+++.++.+....| .+.+++||.+++.+|++|++.+||-..
T Consensus 367 ~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 367 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 4466789999988887664433222 445899999999999999999999754
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.88 E-value=0.0055 Score=56.40 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=36.6
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCC-CeeEEEEecccch--HHHhh-hcCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRP-EIKLIVTSATLDA--VKFSS-YFFE 276 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~-~lKlIlMSATl~~--~~F~~-yF~~ 276 (558)
+...+.+++||+|.-. +.++ ...++.++...| +.++|+||||+.. ..|.+ |+.+
T Consensus 144 ~~~~~~lViDEah~~~-~~~~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~ 201 (206)
T 1vec_A 144 VDHVQMIVLDEADKLL-SQDF-VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEK 201 (206)
T ss_dssp CTTCCEEEEETHHHHT-STTT-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSS
T ss_pred cccCCEEEEEChHHhH-hhCc-HHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCC
Confidence 6678899999999732 3333 344556665444 7899999999965 44444 5544
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.66 E-value=0.0041 Score=58.00 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=39.1
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcC-CCeeEEEEecccch--HHHh-hhcCCCCEEEe
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKR-PEIKLIVTSATLDA--VKFS-SYFFEAPIFTI 282 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r-~~lKlIlMSATl~~--~~F~-~yF~~~pvi~I 282 (558)
+...+.+++||+|.-.-..++ ...++.++... ++.++|+||||+.. +.|. .|+.++..|.|
T Consensus 156 ~~~~~~lViDEah~~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHH-HHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred cccCCEEEEcCHHHHhcccCc-HHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 677899999999964321122 22344555433 47899999999965 4444 47766655543
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.27 E-value=0.013 Score=55.65 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=41.6
Q ss_pred ccccccceeccccccccc--CCCchhhhHHHhh--cCCCeeEEEEecccch--HHHhh-hcCCCCEEEecCC
Q psy12726 221 LSKFKKNQRLEPLQRTNR--ISFPPGLLKQAVK--KRPEIKLIVTSATLDA--VKFSS-YFFEAPIFTIPGR 285 (558)
Q Consensus 221 l~~~~~vi~De~her~~~--~D~ll~~lk~~l~--~r~~lKlIlMSATl~~--~~F~~-yF~~~pvi~Ipgr 285 (558)
+...+.+++||+|.-.-. .++.-.+ ..++. ..++.++++||||+.. ..|.+ |+.++..|.+.++
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQL-ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHH-HHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cccCcEEEEeChHHhcccccccHHHHH-HHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 677899999999975322 2333333 33333 2467899999999964 44554 6666667777664
No 85
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.24 E-value=0.056 Score=60.06 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCcc-cccccCccchhhHHHHHHhhcc----CChHHHHHHHhHhcC-CCCccCChhHHHHHHHHHhh-------hcCCC
Q psy12726 5 VVTPI-SQMAEFPLEPNLSKMLIMSVHL----QCSDEVLTIVSMLSV-QNVFYRPKDKQALADQKKAK-------FNQME 71 (558)
Q Consensus 5 ~lT~l-~~ma~lPl~PrlakmLl~~~~~----~c~~~~~~iaA~Ls~-~~~f~~~~~~~~~~~~~~~~-------~~~~~ 71 (558)
.+|++ +.|+.+|++|..+++++.+... +|..+++.|+|++++ .++|.++.+.....+..... .....
T Consensus 478 ~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~ 557 (720)
T 2zj8_A 478 RPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYIS 557 (720)
T ss_dssp EECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSS
T ss_pred eeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccc
Confidence 68999 8999999999999999999887 899999999999987 77888776544433322110 01111
Q ss_pred C----------CHHHHHHHHHHHHhcCCchHHHHHccCCHHHHHHHHHHHHHHHHH
Q psy12726 72 G----------DHITLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGI 117 (558)
Q Consensus 72 s----------D~l~~l~~~~~~~~~~~~~~~c~~~~L~~~~l~~i~~~r~qL~~~ 117 (558)
+ .+....-+++.|.+...-...|.+..+....+..+.+....|...
T Consensus 558 ~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a 613 (720)
T 2zj8_A 558 GYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYS 613 (720)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHH
Confidence 1 122333345777665544556666666555555444444444433
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.53 E-value=0.027 Score=54.20 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=37.3
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhc-CCCeeEEEEecccch--HHHhh-hcCCCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKK-RPEIKLIVTSATLDA--VKFSS-YFFEAP 278 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~-r~~lKlIlMSATl~~--~~F~~-yF~~~p 278 (558)
+...+.+++||+| +..+.++. ..++.++.. .++.++|+||||+.. ..|.+ ++.+.|
T Consensus 199 ~~~l~~lViDEah-~l~~~~~~-~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 199 YKNLQCLVIDEAD-RILDVGFE-EELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CTTCCEEEECSHH-HHHHTTCH-HHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cccCCEEEEcChH-HHhhhhHH-HHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 6678999999999 44444443 333445543 456899999999975 45665 555444
No 87
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.26 E-value=0.027 Score=53.67 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=38.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh--cCC---CeeEEEEecccchH--HHhh-hcCCCCEEEecC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK--KRP---EIKLIVTSATLDAV--KFSS-YFFEAPIFTIPG 284 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~--~r~---~lKlIlMSATl~~~--~F~~-yF~~~pvi~Ipg 284 (558)
+...+.+++||+|.=. +..+ -..++.++. ..| +.++|+||||+..+ .|.+ |+.++..|.+..
T Consensus 172 ~~~~~~lViDEah~~~-~~~~-~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 172 LEFCKYIVLDEADRML-DMGF-EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp CTTCCEEEEETHHHHH-HTTC-HHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred hhhCCEEEEeCHHHHH-hCch-HHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 6677899999999622 2222 223455554 223 67899999999763 4544 666555566643
No 88
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.30 E-value=0.052 Score=53.32 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=40.7
Q ss_pred ccccccceecccccccccCCCchhhhHHHhh-cCCCeeEEEEecccch--HHHhh-hcCCCCEEEec
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVK-KRPEIKLIVTSATLDA--VKFSS-YFFEAPIFTIP 283 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~-~r~~lKlIlMSATl~~--~~F~~-yF~~~pvi~Ip 283 (558)
+.....+++||+|.-. +.......+..++. .+++.++|+||||+.. ..|.+ |+.++-+|.+.
T Consensus 233 l~~l~~lVlDEad~l~-~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMI-ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp GGGCSEEEETTHHHHH-HSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hhhceEEEEeCHHHHh-hccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 6788999999999532 32223333444444 3467899999999975 45655 56666566664
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.91 E-value=0.049 Score=50.05 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=27.8
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcC--------------CCeeEEEEecc
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKR--------------PEIKLIVTSAT 264 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r--------------~~lKlIlMSAT 264 (558)
+..+..+|+||+|.-. ...+.-.+++.++..+ ++.++|.||||
T Consensus 160 ~~~~~~iIiDEah~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 160 LSDFSLIIIDECHHTN-KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGGCSEEEETTC--------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hhcccEEEEECchhhc-cCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 5678999999999653 4445555555555443 78999999999
No 90
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=92.18 E-value=0.79 Score=52.64 Aligned_cols=68 Identities=13% Similarity=-0.100 Sum_probs=42.9
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccch-------HHHhhhcCCCCEEEe-------cCCC
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDA-------VKFSSYFFEAPIFTI-------PGRT 286 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~-------~~F~~yF~~~pvi~I-------pgr~ 286 (558)
+.....+|+||+|.-. .. ...+.+....|+...+.+|||... ..-.++||+ ++-.. .|-.
T Consensus 399 ~~~~~lvIiDEAHrs~-~~----~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l 472 (1038)
T 2w00_A 399 YNQQVVFIFDECHRSQ-FG----EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKV 472 (1038)
T ss_dssp GGSCEEEEEESCCTTH-HH----HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSS
T ss_pred cccccEEEEEccchhc-ch----HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCc
Confidence 4567899999999632 21 234555566688899999999853 234567764 22211 3555
Q ss_pred Ccceeecc
Q psy12726 287 FPVEVLYT 294 (558)
Q Consensus 287 fpV~~~yl 294 (558)
-|+.+.|.
T Consensus 473 ~p~~v~y~ 480 (1038)
T 2w00_A 473 LKFKVDYN 480 (1038)
T ss_dssp CCEEEEEC
T ss_pred CCeEEEEE
Confidence 67766554
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=87.77 E-value=0.16 Score=49.05 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=40.0
Q ss_pred eEEEeccCCCChHHHHhh---cccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRI---FEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~v---f~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||+++.++..++ |+..+ ..+-+++||.++..+|.++++.+||-..
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFD 191 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECS
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEEC
Confidence 456779999998877765 44432 2345789999999999999999999764
No 92
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=86.51 E-value=0.76 Score=50.11 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=42.7
Q ss_pred eEEEeccCCCChHHHHhh---cccCCCCCeEEEEeeccccceeeeCCeEEEEcCC
Q psy12726 492 LIILPVYSALPSEMQTRI---FEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPF 543 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~v---f~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~g 543 (558)
+.+..+||+++.++..++ |+..+.+...+++||.++.++|+++++.+||-..
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 668889999998887755 6655444557899999999999999999999654
No 93
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=80.03 E-value=4.6 Score=42.81 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=10.0
Q ss_pred EEEE--eeccccceeeeCC----eEEEEcCCh
Q psy12726 519 KVVI--ATNIAETSLTIDG----IFYVVDPFD 544 (558)
Q Consensus 519 kVIl--aTNIAETSiTIpd----V~~VID~g~ 544 (558)
-|.+ +|...--+|-+|| ++.||-.|.
T Consensus 430 ~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~l 461 (540)
T 2vl7_A 430 YLVMLVMRAKESEGVEFREKENLFESLVLAGL 461 (540)
T ss_dssp CEEEEEC---------------CEEEEEEESC
T ss_pred eEEEEEecCceecceecCCCcccccEEEEECC
Confidence 3555 8899999999998 899987773
No 94
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=79.83 E-value=1.1 Score=50.27 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=42.2
Q ss_pred eEEEeccCCCChHHHHhh---cccCCCCCeEEEEeeccccceeeeCCeEEEEcC
Q psy12726 492 LIILPVYSALPSEMQTRI---FEAAPPGSRKVVIATNIAETSLTIDGIFYVVDP 542 (558)
Q Consensus 492 ~~vlpLhs~l~~~~Q~~v---f~~~~~g~rkVIlaTNIAETSiTIpdV~~VID~ 542 (558)
+.+..+||+++..+++++ |+.+..+...+++||.++.++|.++.+..||-.
T Consensus 597 ~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~ 650 (800)
T 3mwy_W 597 INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIF 650 (800)
T ss_dssp CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEe
Confidence 667889999999888766 555444566799999999999999999999854
No 95
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=71.55 E-value=2.1 Score=41.01 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=30.2
Q ss_pred ccccccceecccccccccCCCchhhhHHHhhc-CCCeeEEEEecccch
Q psy12726 221 LSKFKKNQRLEPLQRTNRISFPPGLLKQAVKK-RPEIKLIVTSATLDA 267 (558)
Q Consensus 221 l~~~~~vi~De~her~~~~D~ll~~lk~~l~~-r~~lKlIlMSATl~~ 267 (558)
+..++.+|+||+|.-.-. .++.++.. ++..++++||||+..
T Consensus 223 ~~~~~~vIiDEaH~~~~~------~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 223 FSQFGMMMNDECHLATGK------SISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp GGGEEEEEEETGGGCCHH------HHHHHTTTCTTCCEEEEECSSCCT
T ss_pred HhhCCEEEEECCccCCcc------cHHHHHHHhhcCCeEEEEeCCCCC
Confidence 667899999999986521 34455553 367899999999953
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=70.09 E-value=3.1 Score=38.80 Aligned_cols=40 Identities=13% Similarity=-0.079 Sum_probs=28.4
Q ss_pred cccccceecccccccccCCCchhhhHHHhhcCCCeeEEEEecccch
Q psy12726 222 SKFKKNQRLEPLQRTNRISFPPGLLKQAVKKRPEIKLIVTSATLDA 267 (558)
Q Consensus 222 ~~~~~vi~De~her~~~~D~ll~~lk~~l~~r~~lKlIlMSATl~~ 267 (558)
..+..+|+||+|.-.-. ..+.++...+..++++||||+.-
T Consensus 191 ~~~~llIiDEaH~l~~~------~~~~i~~~~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 191 NRFMLLIFDEVHHLPAE------SYVQIAQMSIAPFRLGLTATFER 230 (237)
T ss_dssp TTCSEEEEECSSCCCTT------THHHHHHTCCCSEEEEEEESCC-
T ss_pred ccCCEEEEECCccCCCh------HHHHHHHhccCCEEEEEecCCCC
Confidence 45789999999975422 23455555567889999999854
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=35.58 E-value=74 Score=33.41 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=42.6
Q ss_pred eeEEEEecccch-HHHhhhcCCC-CEE------EecCCCCcce-eeccCC-CC-------cchHHHHHHHHHHHHhcCCC
Q psy12726 256 IKLIVTSATLDA-VKFSSYFFEA-PIF------TIPGRTFPVE-VLYTKE-PE-------TDYLDASLITVMQIHLREPP 318 (558)
Q Consensus 256 lKlIlMSATl~~-~~F~~yF~~~-pvi------~Ipgr~fpV~-~~yl~~-~~-------~d~~~~~~~~~~~i~~~~~~ 318 (558)
-.+|+|||||.. +.|.+-+|-. +.- .++ ..|+=. ..|... .+ .++.++....+..+... .+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~-spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ-KRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT-SCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecC-CcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CC
Confidence 589999999986 3355555533 221 111 112000 112211 11 23555555666665543 56
Q ss_pred CCEEEEecChHHHHHHH
Q psy12726 319 GDVLLFLTGKLDVRKQL 335 (558)
Q Consensus 319 g~iLvfl~g~~ei~~~~ 335 (558)
|.+|||.|+....++..
T Consensus 394 g~~lvlF~Sy~~l~~v~ 410 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVM 410 (551)
T ss_dssp SEEEEEESCHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHH
Confidence 89999999998765544
No 98
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=35.36 E-value=1.6e+02 Score=32.99 Aligned_cols=105 Identities=17% Similarity=0.058 Sum_probs=65.3
Q ss_pred ccccceecccccccccCCCchhhhHHHhhcC------C----------------CeeEEEEecccch--HHHhhhcCCCC
Q psy12726 223 KFKKNQRLEPLQRTNRISFPPGLLKQAVKKR------P----------------EIKLIVTSATLDA--VKFSSYFFEAP 278 (558)
Q Consensus 223 ~~~~vi~De~her~~~~D~ll~~lk~~l~~r------~----------------~lKlIlMSATl~~--~~F~~yF~~~p 278 (558)
.-.++|+||...|.+..==+-.=|-+.+... + --||--|+.|+.. +.|.+.| +..
T Consensus 324 dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY-~l~ 402 (997)
T 2ipc_A 324 DGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIY-GMD 402 (997)
T ss_dssp SSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHH-CCC
T ss_pred CCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHHHh-CCC
Confidence 3467899999999664211111122222211 1 1489999999975 5566665 678
Q ss_pred EEEecCCCCcce------eeccCCCCcchHHHHHHHHHHHHhcCCCCCEEEEecChHHHHH
Q psy12726 279 IFTIPGRTFPVE------VLYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLDVRK 333 (558)
Q Consensus 279 vi~Ipgr~fpV~------~~yl~~~~~d~~~~~~~~~~~i~~~~~~g~iLvfl~g~~ei~~ 333 (558)
|+.||.- .|+. ..| .+......+.+..+...|.... -+||+-++.++.+.
T Consensus 403 Vv~IPTn-~p~~R~D~~d~vy--~t~~~K~~AIv~eI~~~~~~Gq--PVLVgT~SIe~SE~ 458 (997)
T 2ipc_A 403 VVVVPTN-RPVIRKDFPDVVY--RTEKGKFYAVVEEIAEKYERGQ--PVLVGTISIEKSER 458 (997)
T ss_dssp EEECCCS-SCCCCEEEEEEEE--SSHHHHHHHHHHHHHHHHHHTC--CEEEECSSHHHHHH
T ss_pred EEEcCCC-CCcccccCCCeEE--cCHHHHHHHHHHHHHHHHHCCC--CEEEEeCCHHHHHH
Confidence 9999974 3442 122 2345566777788888887653 49999988876543
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=34.67 E-value=68 Score=34.35 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=41.4
Q ss_pred eeEEEEecccch-HHHhhhcCC-CCEEEecCCCCcce---eeccCCCC-------cchHHHHHHHHHHHHhcCCCCCEEE
Q psy12726 256 IKLIVTSATLDA-VKFSSYFFE-APIFTIPGRTFPVE---VLYTKEPE-------TDYLDASLITVMQIHLREPPGDVLL 323 (558)
Q Consensus 256 lKlIlMSATl~~-~~F~~yF~~-~pvi~Ipgr~fpV~---~~yl~~~~-------~d~~~~~~~~~~~i~~~~~~g~iLv 323 (558)
-.+|+|||||.. +.|.+-+|- ...+.++ ..||-+ +++.+..+ ..+.......+..+... .+|.+||
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lv 453 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIV 453 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEE
T ss_pred CeEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEE
Confidence 469999999976 444444442 2223333 223211 22222111 12344444445554443 3688999
Q ss_pred EecChHHHHHHH
Q psy12726 324 FLTGKLDVRKQL 335 (558)
Q Consensus 324 fl~g~~ei~~~~ 335 (558)
|.|+....++..
T Consensus 454 lF~Sy~~l~~v~ 465 (620)
T 4a15_A 454 YFPSYSLMDRVE 465 (620)
T ss_dssp EESCHHHHHHHT
T ss_pred EeCCHHHHHHHH
Confidence 999998765543
No 100
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=29.65 E-value=20 Score=20.57 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=9.5
Q ss_pred CCCeeEEEEecc
Q psy12726 253 RPEIKLIVTSAT 264 (558)
Q Consensus 253 r~~lKlIlMSAT 264 (558)
...++||+|||.
T Consensus 10 cdP~evivlsds 21 (26)
T 2kqs_B 10 CDPEEIIVLSDS 21 (26)
T ss_pred CCcceEEEcccc
Confidence 356899999985
No 101
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.89 E-value=1.6e+02 Score=23.57 Aligned_cols=33 Identities=3% Similarity=0.123 Sum_probs=25.9
Q ss_pred hhhhHHHhhcCCCeeEEEEecccchHHHhhhcC
Q psy12726 243 PGLLKQAVKKRPEIKLIVTSATLDAVKFSSYFF 275 (558)
Q Consensus 243 l~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF~ 275 (558)
+.+++.+....|++++|+||+.-+.+...+.+.
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 115 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMR 115 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 456677777789999999999988877776653
No 102
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.78 E-value=1.4e+02 Score=23.79 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=25.0
Q ss_pred hhhhHHHhhcCCCeeEEEEecccchHHHhhhc
Q psy12726 243 PGLLKQAVKKRPEIKLIVTSATLDAVKFSSYF 274 (558)
Q Consensus 243 l~~lk~~l~~r~~lKlIlMSATl~~~~F~~yF 274 (558)
+.+++.+....|++++|++|+.-+.+.-.+.+
T Consensus 68 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 99 (136)
T 3kto_A 68 IELLETLVKRGFHLPTIVMASSSDIPTAVRAM 99 (136)
T ss_dssp HHHHHHHHHTTCCCCEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 45667777777999999999998877666655
Done!