RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12726
         (558 letters)



>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
           virus [TaxId: 11089]}
          Length = 299

 Score = 70.0 bits (171), Expect = 7e-14
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 18/98 (18%)

Query: 11  QMAEFPLEPNLSKMLIMSVHLQCSDEVLTIVSMLS-VQNVFYRPKDKQALAD-QKKAKFN 68
           +  + P+                S +V       +  +  F  P++ + L D  +  K  
Sbjct: 218 RNCDLPVW--------------LSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCR 263

Query: 69  QMEGDHITLLAVYNSWRNNKFSNAWCYENFVQIRTLKR 106
              G    L   +        S+      F++    +R
Sbjct: 264 APGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGRR 299



 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 15/87 (17%)

Query: 467 SREEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEAAPPGSRKVVIATNI 526
           S    +     L    +  G  V     + +           I +         ++AT+I
Sbjct: 45  SIRAANVMAASL----RKAGKSV-----VVLNRKTFEREYPTIKQ----KKPDFILATDI 91

Query: 527 AETSLTIDGIFYVVDPFDIEVRQAKYH 553
           AE    +  +  V+D      +     
Sbjct: 92  AEMGANLC-VERVLD-CRTAFKPVLVD 116


>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
           C virus (HCV), different isolates [TaxId: 11103]}
          Length = 136

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 3/21 (14%), Positives = 9/21 (42%)

Query: 244 GLLKQAVKKRPEIKLIVTSAT 264
           G +    +      +++ +AT
Sbjct: 115 GTVLDQAETAGARLVVLATAT 135


>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 125

 Score = 26.1 bits (57), Expect = 6.6
 Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 293 YTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGKLD-VRKQLLGIMDRHKL 344
           +T E     +    +  ++  +    GD ++ +  +       L  ++ R ++
Sbjct: 68  HTDELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENALREVIRRAEM 120


>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase,
           C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 525

 Score = 27.2 bits (59), Expect = 6.7
 Identities = 3/38 (7%), Positives = 13/38 (34%)

Query: 180 WVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSD 217
           +     +     +  ++   I P+ +++      +  D
Sbjct: 447 YYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVD 484



 Score = 27.2 bits (59), Expect = 6.7
 Identities = 3/38 (7%), Positives = 13/38 (34%)

Query: 401 WVIYHELVQTTKEYMREVTSIDPKWLVEFAPAFFKFSD 438
           +     +     +  ++   I P+ +++      +  D
Sbjct: 447 YYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVD 484


>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 25.5 bits (56), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 478 LYERMKSLGP-DVPELIILPVYSALP 502
           L E +KS  P   PEL++LPV     
Sbjct: 70  LLECLKSHHPYQTPELLVLPVTHGDT 95


>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase,
           N-terminal domain {Lactobacillus brevis [TaxId: 1580]}
          Length = 268

 Score = 26.5 bits (58), Expect = 7.8
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 24/126 (19%)

Query: 456 NKYEEPNAWRISREEIDTACEILYERMKSLG----------------PDVPELIILPVYS 499
            +  E   W +     D   + L E M SLG                  +  + +  V+ 
Sbjct: 2   KRIFEVQPWNVITHTFDPKDKRLQESMTSLGNGYMGMRGDFEEGYSGDSLQGIYLGGVWY 61

Query: 500 ALPSEMQTRIFEAAPPGSRKVVIATNIAETSLTIDGIFYVVDPFDIE-------VRQAKY 552
              + +        P    KVV A N  +  + I+G    +    I        + Q   
Sbjct: 62  PDKTRVGWW-KNGYPKYFGKVVNAVNFIKLPIEINGEPVDLAKDKISDFTLDLDMHQGVL 120

Query: 553 HRCAVV 558
           +R  VV
Sbjct: 121 NRSFVV 126


>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
           yoelii yoelii [TaxId: 73239]}
          Length = 404

 Score = 26.7 bits (58), Expect = 8.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 466 ISREEIDTACEILYERMKSL 485
           I++E++D   EI+ + +K  
Sbjct: 384 ITKEQLDECTEIIVKTVKFF 403


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,061,818
Number of extensions: 97824
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 14
Length of query: 558
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 468
Effective length of database: 1,171,896
Effective search space: 548447328
Effective search space used: 548447328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)