Query psy12731
Match_columns 107
No_of_seqs 140 out of 582
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:15:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02560 enoyl-CoA reductase 100.0 3E-39 6.5E-44 250.7 8.6 92 1-94 18-115 (308)
2 KOG1639|consensus 100.0 1.7E-34 3.7E-39 217.6 7.1 103 2-107 18-122 (297)
3 cd01801 Tsc13_N Ubiquitin-like 99.7 6.1E-17 1.3E-21 102.6 6.5 58 4-61 20-77 (77)
4 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 6.3E-17 1.4E-21 102.2 5.0 55 1-58 16-70 (73)
5 cd01793 Fubi Fubi ubiquitin-li 99.6 3.7E-16 8.1E-21 98.0 4.9 55 1-58 13-67 (74)
6 cd01794 DC_UbP_C dendritic cel 99.6 6.2E-16 1.3E-20 96.8 4.8 55 1-58 13-67 (70)
7 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.9E-15 4.1E-20 96.2 5.1 56 1-57 17-72 (80)
8 cd01804 midnolin_N Ubiquitin-l 99.6 2E-15 4.3E-20 96.0 4.7 54 1-58 16-69 (78)
9 cd01810 ISG15_repeat2 ISG15 ub 99.6 2.2E-15 4.8E-20 94.5 4.9 55 1-58 13-67 (74)
10 cd01807 GDX_N ubiquitin-like d 99.6 2.4E-15 5.2E-20 94.2 4.8 55 1-58 15-69 (74)
11 cd01808 hPLIC_N Ubiquitin-like 99.6 3E-15 6.5E-20 93.1 4.9 55 1-58 14-68 (71)
12 cd01798 parkin_N amino-termina 99.6 3.3E-15 7.2E-20 92.6 4.7 55 1-58 13-67 (70)
13 cd01796 DDI1_N DNA damage indu 99.6 5.1E-15 1.1E-19 92.5 5.0 56 1-59 14-70 (71)
14 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 8.1E-15 1.8E-19 93.3 5.2 53 4-58 18-72 (75)
15 cd01797 NIRF_N amino-terminal 99.5 9.9E-15 2.1E-19 93.0 5.1 53 3-58 19-71 (78)
16 cd01802 AN1_N ubiquitin-like d 99.5 1.2E-14 2.7E-19 97.2 5.1 55 1-58 42-96 (103)
17 cd01805 RAD23_N Ubiquitin-like 99.5 2.3E-14 5.1E-19 89.7 5.2 55 1-58 15-71 (77)
18 PF00240 ubiquitin: Ubiquitin 99.5 2.2E-14 4.9E-19 88.0 4.8 55 1-58 10-64 (69)
19 cd01790 Herp_N Homocysteine-re 99.5 2.4E-14 5.2E-19 91.9 4.7 56 1-58 18-76 (79)
20 cd01800 SF3a120_C Ubiquitin-li 99.5 2.6E-14 5.7E-19 90.2 4.8 55 1-58 12-66 (76)
21 cd01812 BAG1_N Ubiquitin-like 99.5 2.7E-14 5.8E-19 88.0 4.7 55 1-58 14-68 (71)
22 cd01803 Ubiquitin Ubiquitin. U 99.5 3.4E-14 7.4E-19 88.3 4.8 55 1-58 15-69 (76)
23 cd01806 Nedd8 Nebb8-like ubiq 99.5 5E-14 1.1E-18 87.5 5.1 55 1-58 15-69 (76)
24 cd01813 UBP_N UBP ubiquitin pr 99.5 4.5E-14 9.7E-19 89.2 4.8 57 1-58 14-71 (74)
25 PTZ00044 ubiquitin; Provisiona 99.5 4.8E-14 1E-18 88.2 4.8 55 1-58 15-69 (76)
26 cd01809 Scythe_N Ubiquitin-lik 99.5 6.6E-14 1.4E-18 86.2 4.9 56 1-59 15-70 (72)
27 cd01799 Hoil1_N Ubiquitin-like 99.4 4.1E-13 8.9E-18 85.1 4.4 54 1-58 17-72 (75)
28 KOG0005|consensus 99.4 2.7E-13 5.9E-18 82.9 2.7 55 1-58 15-69 (70)
29 cd01769 UBL Ubiquitin-like dom 99.4 1.3E-12 2.8E-17 79.0 5.0 58 1-61 12-69 (69)
30 smart00213 UBQ Ubiquitin homol 99.3 1.7E-12 3.7E-17 77.5 4.0 51 1-54 14-64 (64)
31 KOG0004|consensus 99.3 9.2E-13 2E-17 93.5 2.8 55 1-58 15-69 (156)
32 cd01795 USP48_C USP ubiquitin- 99.3 6.2E-12 1.3E-16 83.9 5.3 56 1-59 19-75 (107)
33 KOG0003|consensus 99.2 6.4E-13 1.4E-17 89.7 -1.0 63 1-66 15-79 (128)
34 cd01814 NTGP5 Ubiquitin-like N 99.2 9.5E-12 2.1E-16 84.5 4.2 54 3-58 22-87 (113)
35 KOG0010|consensus 99.2 1.4E-11 2.9E-16 100.5 4.5 55 1-58 29-83 (493)
36 TIGR00601 rad23 UV excision re 99.2 3E-11 6.5E-16 96.5 5.2 55 1-58 15-72 (378)
37 cd01763 Sumo Small ubiquitin-r 99.2 6.3E-11 1.4E-15 76.6 5.3 55 1-58 26-80 (87)
38 cd01789 Alp11_N Ubiquitin-like 99.1 9.1E-11 2E-15 75.6 5.5 60 2-63 18-83 (84)
39 PF14560 Ubiquitin_2: Ubiquiti 99.1 1.6E-10 3.6E-15 74.4 4.7 62 2-64 19-86 (87)
40 KOG0011|consensus 98.8 8E-09 1.7E-13 81.1 4.4 55 1-58 15-71 (340)
41 PF11976 Rad60-SLD: Ubiquitin- 98.7 2.1E-08 4.6E-13 61.8 3.9 55 2-59 16-71 (72)
42 KOG0001|consensus 98.6 1.6E-07 3.4E-12 55.8 5.4 55 2-59 15-69 (75)
43 cd01788 ElonginB Ubiquitin-lik 98.4 2.6E-07 5.6E-12 63.1 4.2 49 1-52 16-64 (119)
44 cd00196 UBQ Ubiquitin-like pro 98.4 1.1E-06 2.4E-11 49.3 5.0 56 2-60 13-68 (69)
45 PF11543 UN_NPL4: Nuclear pore 98.4 2.7E-07 5.9E-12 59.1 2.4 59 1-60 18-79 (80)
46 KOG4248|consensus 98.1 2.4E-06 5.1E-11 75.2 4.0 55 3-61 19-73 (1143)
47 PF13881 Rad60-SLD_2: Ubiquiti 97.9 2.2E-05 4.8E-10 53.2 4.9 51 2-54 19-75 (111)
48 KOG4495|consensus 97.6 3.5E-05 7.6E-10 51.3 2.5 50 2-52 17-66 (110)
49 PF10302 DUF2407: DUF2407 ubiq 97.4 0.00022 4.8E-09 47.3 4.0 42 5-47 22-63 (97)
50 KOG3493|consensus 97.4 3.5E-05 7.7E-10 47.9 -0.1 53 1-56 16-68 (73)
51 cd01811 OASL_repeat1 2'-5' oli 97.3 0.00056 1.2E-08 43.6 4.8 56 2-59 16-74 (80)
52 KOG1872|consensus 97.3 0.00035 7.6E-09 57.4 4.7 53 3-58 20-72 (473)
53 PF08817 YukD: WXG100 protein 97.3 0.00027 5.8E-09 44.6 3.0 57 2-59 18-79 (79)
54 KOG0006|consensus 97.2 0.00028 6E-09 56.1 2.8 54 1-57 18-71 (446)
55 KOG3206|consensus 96.4 0.0086 1.9E-07 45.0 5.4 63 2-65 18-85 (234)
56 PF15044 CLU_N: Mitochondrial 96.0 0.015 3.2E-07 36.8 4.4 55 3-59 1-56 (76)
57 PF11470 TUG-UBL1: GLUT4 regul 95.6 0.039 8.6E-07 34.0 4.8 54 1-57 11-64 (65)
58 cd01774 Faf1_like2_UBX Faf1 ik 95.4 0.082 1.8E-06 34.0 6.2 57 3-61 21-85 (85)
59 smart00166 UBX Domain present 95.4 0.094 2E-06 32.8 6.2 56 3-59 21-79 (80)
60 PF00789 UBX: UBX domain; Int 95.0 0.072 1.6E-06 33.2 4.9 56 3-59 23-81 (82)
61 cd01770 p47_UBX p47-like ubiqu 94.9 0.16 3.4E-06 32.1 6.2 52 3-54 21-73 (79)
62 cd01767 UBX UBX (ubiquitin reg 94.6 0.23 4.9E-06 30.8 6.3 54 3-59 19-75 (77)
63 KOG1769|consensus 94.4 0.12 2.7E-06 34.4 4.9 54 2-58 36-89 (99)
64 KOG0013|consensus 94.3 0.069 1.5E-06 40.2 4.0 49 3-54 163-211 (231)
65 cd01772 SAKS1_UBX SAKS1-like U 93.8 0.38 8.3E-06 30.2 6.2 55 3-59 21-78 (79)
66 PF08825 E2_bind: E2 binding d 91.9 0.26 5.7E-06 31.7 3.6 58 1-62 1-72 (84)
67 cd01773 Faf1_like1_UBX Faf1 ik 90.7 1.5 3.2E-05 28.2 6.1 55 4-60 23-80 (82)
68 PF14732 UAE_UbL: Ubiquitin/SU 90.0 0.49 1.1E-05 30.5 3.4 63 5-68 7-76 (87)
69 PF10209 DUF2340: Uncharacteri 89.9 1.2 2.6E-05 30.8 5.5 56 3-58 22-105 (122)
70 TIGR01682 moaD molybdopterin c 89.9 0.89 1.9E-05 28.2 4.5 52 2-58 21-73 (80)
71 cd01771 Faf1_UBX Faf1 UBX doma 88.4 2.7 5.9E-05 26.5 6.0 55 3-59 21-78 (80)
72 cd00754 MoaD Ubiquitin domain 88.0 1 2.3E-05 27.4 3.8 52 2-58 21-73 (80)
73 PLN02799 Molybdopterin synthas 87.9 0.58 1.3E-05 29.1 2.7 52 2-58 24-75 (82)
74 PF13019 Telomere_Sde2: Telome 87.3 2.5 5.5E-05 30.5 5.9 50 2-53 20-72 (162)
75 PF02597 ThiS: ThiS family; I 87.1 0.48 1E-05 28.6 1.9 54 2-58 17-70 (77)
76 PF10790 DUF2604: Protein of U 86.9 2.1 4.5E-05 26.8 4.6 55 3-58 12-68 (76)
77 PF14836 Ubiquitin_3: Ubiquiti 85.3 4 8.7E-05 26.6 5.6 54 3-58 20-77 (88)
78 TIGR01687 moaD_arch MoaD famil 84.8 2.4 5.2E-05 26.5 4.4 50 6-58 24-81 (88)
79 COG5417 Uncharacterized small 83.2 2.6 5.6E-05 27.0 3.9 54 4-58 24-80 (81)
80 PF09379 FERM_N: FERM N-termin 81.0 4.2 9E-05 24.7 4.3 58 1-59 11-75 (80)
81 PRK00753 psbL photosystem II r 80.7 1.3 2.9E-05 24.5 1.6 19 75-93 20-38 (39)
82 TIGR02958 sec_mycoba_snm4 secr 80.1 5.3 0.00012 32.9 5.7 56 3-60 18-79 (452)
83 KOG2086|consensus 79.4 3.5 7.7E-05 33.5 4.4 52 3-54 322-374 (380)
84 cd06406 PB1_P67 A PB1 domain i 79.0 3.1 6.7E-05 26.7 3.2 30 1-31 15-44 (80)
85 KOG2982|consensus 78.0 3 6.4E-05 33.7 3.5 53 5-58 356-414 (418)
86 smart00295 B41 Band 4.1 homolo 76.2 11 0.00023 26.4 5.7 57 1-59 18-81 (207)
87 PF08337 Plexin_cytopl: Plexin 76.1 4 8.6E-05 34.7 3.9 56 2-58 207-286 (539)
88 cd06539 CIDE_N_A CIDE_N domain 74.7 17 0.00036 23.2 5.7 53 7-62 21-73 (78)
89 COG5227 SMT3 Ubiquitin-like pr 73.7 4.9 0.00011 26.7 3.1 51 3-56 41-91 (103)
90 CHL00038 psbL photosystem II p 73.5 2.5 5.3E-05 23.4 1.4 19 75-93 19-37 (38)
91 PF02991 Atg8: Autophagy prote 73.2 8.6 0.00019 25.6 4.3 54 3-59 39-96 (104)
92 PF10407 Cytokin_check_N: Cdc1 73.2 3.3 7.1E-05 26.1 2.1 29 3-31 9-37 (73)
93 PF12754 Blt1: Cell-cycle cont 72.2 1.2 2.6E-05 35.2 0.0 44 6-51 103-160 (309)
94 PF02419 PsbL: PsbL protein; 71.6 2.3 4.9E-05 23.4 1.0 19 75-93 18-36 (37)
95 PTZ00380 microtubule-associate 71.2 7.3 0.00016 26.8 3.7 54 3-59 47-103 (121)
96 PF02017 CIDE-N: CIDE-N domain 69.8 25 0.00053 22.4 5.6 53 7-62 21-73 (78)
97 PF14533 USP7_C2: Ubiquitin-sp 69.7 13 0.00029 27.4 5.1 46 2-48 39-90 (213)
98 cd01760 RBD Ubiquitin-like dom 69.6 9.7 0.00021 23.7 3.7 41 1-42 14-56 (72)
99 KOG4583|consensus 69.1 2.1 4.6E-05 34.5 0.7 44 4-49 29-73 (391)
100 PHA02146 hypothetical protein 69.1 4.8 0.0001 25.6 2.2 22 40-61 13-34 (86)
101 smart00266 CAD Domains present 67.2 29 0.00063 21.9 5.8 54 6-62 18-71 (74)
102 cd01615 CIDE_N CIDE_N domain, 65.2 33 0.00071 21.8 5.8 52 6-60 20-71 (78)
103 PRK06437 hypothetical protein; 64.8 19 0.00042 21.7 4.3 45 2-58 16-60 (67)
104 smart00455 RBD Raf-like Ras-bi 64.1 11 0.00024 23.1 3.1 39 1-40 14-52 (70)
105 KOG2013|consensus 62.9 11 0.00025 32.0 3.9 63 5-68 452-518 (603)
106 PF08783 DWNN: DWNN domain; I 62.1 11 0.00023 23.8 2.8 18 5-23 19-36 (74)
107 cd01445 TST_Repeats Thiosulfat 61.6 10 0.00022 25.9 3.0 35 43-77 85-122 (138)
108 PF11069 DUF2870: Protein of u 61.5 9.9 0.00021 25.3 2.7 26 34-59 6-32 (98)
109 cd00565 ThiS ThiaminS ubiquiti 60.8 31 0.00067 20.3 4.7 49 2-58 10-58 (65)
110 COG5100 NPL4 Nuclear pore prot 58.9 24 0.00052 29.5 5.0 59 1-59 14-77 (571)
111 cd06411 PB1_p51 The PB1 domain 58.8 21 0.00046 22.8 3.8 30 1-31 11-40 (78)
112 PF05969 PSII_Ycf12: Photosyst 58.7 11 0.00024 20.3 2.1 18 69-86 11-28 (33)
113 PF11620 GABP-alpha: GA-bindin 57.9 10 0.00022 24.8 2.3 50 4-56 10-59 (88)
114 cd01611 GABARAP Ubiquitin doma 56.2 25 0.00053 23.7 4.0 54 3-59 47-104 (112)
115 smart00666 PB1 PB1 domain. Pho 55.1 32 0.00068 20.8 4.2 29 2-31 16-44 (81)
116 PRK11130 moaD molybdopterin sy 54.7 40 0.00088 20.7 4.6 17 6-22 25-41 (81)
117 PF11525 CopK: Copper resistan 54.5 5.6 0.00012 25.0 0.6 16 46-61 8-24 (73)
118 PF09469 Cobl: Cordon-bleu ubi 54.1 29 0.00064 22.2 3.9 39 20-61 6-45 (79)
119 cd01764 Urm1 Urm1-like ubuitin 54.0 36 0.00078 22.0 4.4 51 4-58 26-87 (94)
120 cd06407 PB1_NLP A PB1 domain i 53.7 31 0.00067 21.8 4.0 45 2-47 15-63 (82)
121 PF00788 RA: Ras association ( 53.5 35 0.00076 20.7 4.2 42 1-43 21-68 (93)
122 smart00143 PI3K_p85B PI3-kinas 50.7 14 0.0003 23.5 2.0 19 1-19 4-22 (78)
123 KOG0012|consensus 50.4 20 0.00044 29.2 3.3 57 2-61 18-76 (380)
124 cd06537 CIDE_N_B CIDE_N domain 50.2 67 0.0014 20.6 5.7 53 7-63 21-73 (81)
125 PF14453 ThiS-like: ThiS-like 49.6 33 0.00073 20.5 3.4 45 2-60 11-55 (57)
126 PF02192 PI3K_p85B: PI3-kinase 48.4 14 0.00029 23.5 1.7 19 1-19 4-22 (78)
127 PF02196 RBD: Raf-like Ras-bin 47.4 38 0.00082 20.7 3.6 42 1-43 15-56 (71)
128 PRK08364 sulfur carrier protei 47.3 62 0.0013 19.4 4.6 44 2-57 19-62 (70)
129 cd01816 Raf_RBD Ubiquitin doma 46.6 17 0.00036 23.0 1.8 25 2-27 15-39 (74)
130 TIGR01683 thiS thiamine biosyn 46.3 60 0.0013 19.0 4.6 49 2-58 9-57 (64)
131 PF09269 DUF1967: Domain of un 45.3 12 0.00026 22.9 1.0 20 42-61 46-65 (69)
132 TIGR03595 Obg_CgtA_exten Obg f 44.4 16 0.00035 22.3 1.5 20 42-61 46-65 (69)
133 PF00564 PB1: PB1 domain; Int 42.9 41 0.00088 20.3 3.3 43 2-45 17-62 (84)
134 cd01775 CYR1_RA Ubiquitin doma 41.8 63 0.0014 21.4 4.1 52 2-54 18-80 (97)
135 cd06409 PB1_MUG70 The MUG70 pr 41.7 57 0.0012 21.0 3.9 24 2-26 16-39 (86)
136 cd06538 CIDE_N_FSP27 CIDE_N do 40.7 96 0.0021 19.8 5.7 53 6-62 20-72 (79)
137 CHL00184 ycf12 Ycf12; Provisio 37.9 11 0.00024 20.3 0.0 18 69-86 11-28 (33)
138 PRK08228 L(+)-tartrate dehydra 37.9 5.1 0.00011 30.0 -1.7 35 45-81 133-168 (204)
139 PF11834 DUF3354: Domain of un 37.6 62 0.0013 20.0 3.4 43 7-58 26-68 (69)
140 KOG0400|consensus 37.3 20 0.00043 25.4 1.2 26 6-31 27-53 (151)
141 cd05992 PB1 The PB1 domain is 37.0 86 0.0019 18.6 4.0 28 3-31 16-44 (81)
142 cd01818 TIAM1_RBD Ubiquitin do 36.9 44 0.00096 21.3 2.7 30 2-32 15-44 (77)
143 cd06257 DnaJ DnaJ domain or J- 36.4 33 0.00071 18.8 1.9 27 1-27 6-32 (55)
144 PF07354 Sp38: Zona-pellucida- 35.3 36 0.00079 26.5 2.5 41 16-62 5-45 (271)
145 PRK13686 hypothetical protein; 34.3 20 0.00044 20.4 0.7 17 69-85 21-37 (43)
146 PF02037 SAP: SAP domain; Int 32.9 55 0.0012 17.1 2.3 19 5-25 2-20 (35)
147 cd01787 GRB7_RA RA (RAS-associ 32.8 1.4E+02 0.003 19.3 5.2 59 1-60 17-84 (85)
148 cd06536 CIDE_N_ICAD CIDE_N dom 31.9 1.4E+02 0.003 19.1 5.7 54 6-62 20-75 (80)
149 PF10181 PIG-H: GPI-GlcNAc tra 31.5 22 0.00048 21.7 0.7 14 55-68 2-15 (69)
150 PRK07440 hypothetical protein; 31.4 94 0.002 18.8 3.5 49 2-58 15-63 (70)
151 smart00513 SAP Putative DNA-bi 31.1 75 0.0016 16.4 2.7 19 5-25 2-20 (35)
152 KOG4572|consensus 30.7 56 0.0012 29.9 3.2 54 5-60 14-69 (1424)
153 PRK08561 rps15p 30S ribosomal 30.6 28 0.0006 24.9 1.1 64 6-76 27-95 (151)
154 PF12436 USP7_ICP0_bdg: ICP0-b 30.6 43 0.00093 25.2 2.2 57 3-60 91-151 (249)
155 PF14451 Ub-Mut7C: Mut7-C ubiq 30.5 1.4E+02 0.0031 18.7 4.7 46 2-58 28-73 (81)
156 KOG4250|consensus 30.4 1E+02 0.0022 27.4 4.6 28 3-31 331-358 (732)
157 smart00271 DnaJ DnaJ molecular 30.1 48 0.001 18.6 1.9 27 1-27 7-33 (60)
158 cd06408 PB1_NoxR The PB1 domai 29.9 67 0.0014 20.8 2.7 27 2-32 17-43 (86)
159 PF10598 RRM_4: RNA recognitio 29.7 75 0.0016 20.9 3.0 52 42-96 17-80 (93)
160 TIGR00824 EIIA-man PTS system, 29.7 80 0.0017 20.8 3.2 37 2-38 34-72 (116)
161 TIGR00723 ttdB_fumA_fumB hydro 29.6 8.6 0.00019 27.9 -1.6 31 49-81 125-156 (168)
162 KOG4147|consensus 28.0 26 0.00057 24.0 0.6 20 38-57 89-109 (127)
163 KOG0007|consensus 27.5 19 0.00042 28.4 -0.1 38 5-45 302-339 (341)
164 PRK06043 fumarate hydratase; P 27.5 9.7 0.00021 28.2 -1.7 35 45-81 131-166 (192)
165 cd01776 Rin1_RA Ubiquitin doma 27.4 1.5E+02 0.0032 19.3 4.0 42 2-43 19-62 (87)
166 PRK06488 sulfur carrier protei 27.3 1.4E+02 0.0029 17.4 4.3 45 6-58 14-58 (65)
167 KOG2561|consensus 26.9 24 0.00053 29.8 0.4 48 5-55 58-105 (568)
168 PRK08053 sulfur carrier protei 26.1 1.4E+02 0.003 17.6 3.5 49 2-58 11-59 (66)
169 cd01612 APG12_C Ubiquitin-like 25.6 1.9E+02 0.004 18.4 5.7 56 2-59 21-79 (87)
170 smart00314 RA Ras association 25.6 1.1E+02 0.0023 18.8 3.2 41 1-42 20-65 (90)
171 TIGR00887 2A0109 phosphate:H+ 25.3 62 0.0013 26.0 2.4 22 64-85 200-221 (502)
172 TIGR01439 lp_hng_hel_AbrB loop 25.1 1.1E+02 0.0025 15.8 2.8 31 34-64 5-36 (43)
173 PF06198 DUF999: Protein of un 25.1 62 0.0013 22.3 2.0 16 71-86 120-135 (143)
174 KOG1395|consensus 25.0 50 0.0011 27.3 1.8 18 57-74 457-474 (477)
175 PRK06083 sulfur carrier protei 23.5 1.7E+02 0.0036 18.6 3.7 49 2-58 29-77 (84)
176 COG1153 FwdD Formylmethanofura 22.7 66 0.0014 22.4 1.8 22 41-62 36-58 (128)
177 PF12273 RCR: Chitin synthesis 22.1 63 0.0014 21.8 1.6 20 68-87 1-20 (130)
178 PF00226 DnaJ: DnaJ domain; I 21.9 84 0.0018 17.9 2.0 28 1-28 6-33 (64)
179 PRK06944 sulfur carrier protei 21.5 1.8E+02 0.0038 16.7 3.7 48 2-58 11-58 (65)
180 cd06398 PB1_Joka2 The PB1 doma 21.2 2.4E+02 0.0052 18.1 4.5 42 5-47 23-68 (91)
181 COG3097 Uncharacterized protei 20.8 91 0.002 20.8 2.1 23 5-31 74-96 (106)
182 KOG3103|consensus 20.7 53 0.0011 25.3 1.1 55 37-95 76-147 (249)
183 PRK05659 sulfur carrier protei 20.5 1.9E+02 0.0041 16.7 4.6 48 2-57 11-58 (66)
184 PF12436 USP7_ICP0_bdg: ICP0-b 20.5 80 0.0017 23.8 2.0 29 2-31 195-223 (249)
185 cd01768 RA RA (Ras-associating 20.4 1.6E+02 0.0034 17.9 3.1 44 1-45 17-67 (87)
186 COG2029 Uncharacterized conser 20.2 62 0.0014 23.8 1.3 28 32-59 13-40 (189)
No 1
>PLN02560 enoyl-CoA reductase
Probab=100.00 E-value=3e-39 Score=250.68 Aligned_cols=92 Identities=45% Similarity=0.839 Sum_probs=84.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCC-CCccceeEEec-----cCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhhhhhh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQ-LYPDRQAVRLE-----IKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAE 74 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~-i~~~rQrL~l~-----~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtVf~~E 74 (107)
||+++++||+|||++|+++ .+ ++++||||++. .+|+.|+|+++|+++|+++|++|+||||||||||||||++|
T Consensus 18 lev~~~aTV~dLK~~Isk~-~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLGpQi~wrtVF~~E 96 (308)
T PLN02560 18 LEVPDSATVADLKKAIHKR-KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLGPQVSYRTLFFFE 96 (308)
T ss_pred EEcCCCCcHHHHHHHHHHH-cCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCCCcCchhhhHHHH
Confidence 4789999999999999994 55 58999999964 23558999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcccccc
Q psy12731 75 YAGPLFVYLIFYYRPWIFYG 94 (107)
Q Consensus 75 Y~GPl~i~~lf~~~~~~iy~ 94 (107)
|+|||+||++||++++ ||+
T Consensus 97 Y~GPl~i~~l~y~~~~-~y~ 115 (308)
T PLN02560 97 YLGPLLIYPLFYFFPQ-VYK 115 (308)
T ss_pred hhhHHHHHHHHHHhhh-hhc
Confidence 9999999999999999 997
No 2
>KOG1639|consensus
Probab=100.00 E-value=1.7e-34 Score=217.57 Aligned_cols=103 Identities=43% Similarity=0.799 Sum_probs=90.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcccee--EEeccCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhhhhhhhhhhH
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQA--VRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPL 79 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQr--L~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtVf~~EY~GPl 79 (107)
+.+.+.|++|++++|+++..++.+.|+| |+.+.+||+|.|+.+|+++|+.+|.|++||||||||||||||++||+|||
T Consensus 18 ~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLGpQI~wrtvF~~EYlGPL 97 (297)
T KOG1639|consen 18 DLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLGPQISWRTVFFAEYLGPL 97 (297)
T ss_pred cCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccCCccchhhhhHHHhhchH
Confidence 4578899999999888866778885554 55667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCcCC
Q psy12731 80 FVYLIFYYRPWIFYGSEAASKPYSYVAQ 107 (107)
Q Consensus 80 ~i~~lf~~~~~~iy~~~~~~~~~~~~~~ 107 (107)
++|++||+++..+||..+. +|++|+
T Consensus 98 lvy~~Fy~~p~~vyg~~~~---i~~~~~ 122 (297)
T KOG1639|consen 98 LVYPLFYYRPTLVYGKDAV---IHPLQR 122 (297)
T ss_pred HhHhHHHhchheeechhhc---cCHHHH
Confidence 9999999999999998753 777663
No 3
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.69 E-value=6.1e-17 Score=102.59 Aligned_cols=58 Identities=45% Similarity=0.705 Sum_probs=53.9
Q ss_pred cCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
++++||++||++|+++...++++||||+++++|+.|+|+++|+++|+++|++||||||
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence 5889999999999995456789999999889999999999999999999999999998
No 4
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=6.3e-17 Score=102.17 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++|++||++||++|++ ..+++++||||+ ++|+.|+|++||++||+++|++||+
T Consensus 16 ~~v~~~~TV~~LK~~I~~-~~~~~~~~qrLi--~~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 16 VKCNPDDTIGDLKKLIAA-QTGTRPEKIVLK--KWYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred EEeCCCCcHHHHHHHHHH-HhCCChHHEEEE--eCCcCCCCCCCHHHcCCCCCCEEEE
Confidence 378999999999999999 579999999998 8899999999999999999999986
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.63 E-value=3.7e-16 Score=98.00 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=51.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||+++|++|++ ..|+|+++|||+ ++|+.|+|++||++||+++++||++
T Consensus 13 l~v~~~~tV~~lK~~i~~-~~gip~~~q~Li--~~Gk~L~D~~tL~~~~i~~~~tl~l 67 (74)
T cd01793 13 LEVTGQETVSDIKAHVAG-LEGIDVEDQVLL--LAGVPLEDDATLGQCGVEELCTLEV 67 (74)
T ss_pred EEECCcCcHHHHHHHHHh-hhCCCHHHEEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999874
No 6
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.62 E-value=6.2e-16 Score=96.75 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=52.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||+++|++|++ .+|+++++|||+ |+|+.|+|+++|++||++++++||+
T Consensus 13 l~v~~~~TV~~lK~~I~~-~~gi~~~~q~Li--~~G~~L~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQA-AEGVDPCCQRWF--FSGKLLTDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred EEECCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999986
No 7
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=1.9e-15 Score=96.25 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=51.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
+++++++||++||++|++ ..+++++||||...++|+.|+|+++|++||+++|++|+
T Consensus 17 ~~v~~~~TV~~lK~~I~~-~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~ 72 (80)
T cd01792 17 VSLRDSMTVSELKQQIAQ-KIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVL 72 (80)
T ss_pred EEcCCCCcHHHHHHHHHH-HhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEE
Confidence 367899999999999999 57999999999555899999999999999999999886
No 8
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.58 E-value=2e-15 Score=95.98 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=50.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..+++++||||+ ++|+.|+|+ +|++||+++|++|++
T Consensus 16 l~v~~~~TV~~LK~~I~~-~~~~~~~~qrL~--~~Gk~L~d~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 16 LSVPPDETVEGLKKRISQ-RLKVPKERLALL--HRETRLSSG-KLQDLGLGDGSKLTL 69 (78)
T ss_pred EEECCcCHHHHHHHHHHH-HhCCChHHEEEE--ECCcCCCCC-cHHHcCCCCCCEEEE
Confidence 478999999999999999 579999999998 999999998 999999999999985
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=2.2e-15 Score=94.47 Aligned_cols=55 Identities=27% Similarity=0.451 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..|+|+++|+|. ++|+.|+|+++|++||++++++|++
T Consensus 13 l~v~~~~tV~~lK~~I~~-~~gi~~~~q~L~--~~G~~L~D~~tL~~~~i~~~~tl~l 67 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQ-RERVQADQFWLS--FEGRPMEDEHPLGEYGLKPGCTVFM 67 (74)
T ss_pred EEECCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999864
No 10
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.58 E-value=2.4e-15 Score=94.24 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..|+++++|||. ++|+.|+|+.+|++|||+++++|++
T Consensus 15 l~v~~~~tV~~lK~~i~~-~~gi~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~l~l 69 (74)
T cd01807 15 LQVSEKESVSTLKKLVSE-HLNVPEEQQRLL--FKGKALADDKRLSDYSIGPNAKLNL 69 (74)
T ss_pred EEECCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999975
No 11
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=3e-15 Score=93.09 Aligned_cols=55 Identities=33% Similarity=0.503 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 14 l~v~~~~TV~~lK~~I~~-~~~i~~~~~~Li--~~Gk~L~d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 14 IEIAEDASVKDFKEAVSK-KFKANQEQLVLI--FAGKILKDTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred EEECCCChHHHHHHHHHH-HhCCCHHHEEEE--ECCeEcCCCCcHHHcCCCCCCEEEE
Confidence 478899999999999999 579999999988 9999999999999999999999975
No 12
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.57 E-value=3.3e-15 Score=92.58 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||+++|++|++ ..|+++++|+|+ ++|+.|+|+.+|++||+++|++||+
T Consensus 13 ~~v~~~~tV~~lK~~i~~-~~gi~~~~q~Li--~~G~~L~d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAK-RQGVPPDQLRVI--FAGKELRNTTTIQECDLGQQSILHA 67 (70)
T ss_pred EEECCCChHHHHHHHHHH-HHCCCHHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999999985
No 13
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.56 E-value=5.1e-15 Score=92.49 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=52.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vK 59 (107)
+++++++||++||++|++ ..|+|+++|||+ ++|+.|+|+ .+|++||+++|++|+++
T Consensus 14 l~v~~~~TV~~lK~~I~~-~~gip~~~q~Li--~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 14 LDVDPDLELENFKALCEA-ESGIPASQQQLI--YNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred EEECCcCCHHHHHHHHHH-HhCCCHHHeEEE--ECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 478999999999999999 689999999998 999999987 68999999999999985
No 14
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.55 E-value=8.1e-15 Score=93.25 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=47.3
Q ss_pred cCCCcHHHHHHHHHhHh-CCC-CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 4 SGSFTVKDIKKEVHKAK-SQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~-~~i-~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+.++||++||++|+++. +++ ++++|||+ |+||.|+|++||++|||++|++||+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLI--y~GKiL~D~~TL~dygI~~gstlhL 72 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLI--HCGRKLKDDQTLDFYGIQSGSTIHI 72 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEE--eCCcCCCCCCcHHHcCCCCCCEEEE
Confidence 46889999999999943 456 59999999 9999999999999999999999985
No 15
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.54 E-value=9.9e-15 Score=93.02 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=50.3
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++||.+||++|++ ..|+++++|||+ ++||.|+|+.+|++||+++|++|++
T Consensus 19 v~~~~TV~~lK~~i~~-~~gi~~~~QrLi--~~Gk~L~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 19 LSRLTKVEELREKIQE-LFNVEPECQRLF--YRGKQMEDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred cCCcCcHHHHHHHHHH-HhCCCHHHeEEE--eCCEECCCCCCHHHcCCCCCCEEEE
Confidence 6889999999999999 689999999998 9999999999999999999999974
No 16
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.53 E-value=1.2e-14 Score=97.15 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..|+++++|||+ ++|+.|+|+++|++|||+++++|++
T Consensus 42 leV~~~~TV~~lK~kI~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~~~stL~l 96 (103)
T cd01802 42 LRVSPFETVISVKAKIQR-LEGIPVAQQHLI--WNNMELEDEYCLNDYNISEGCTLKL 96 (103)
T ss_pred EEeCCCCcHHHHHHHHHH-HhCCChHHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999874
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.51 E-value=2.3e-14 Score=89.71 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=51.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCC--CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++ ++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 l~v~~~~TV~~lK~~i~~-~~~i~~~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 15 IEVDPDDTVAELKEKIEE-EKGCDYPPEQQKLI--YSGKILKDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred EEECCCCcHHHHHHHHHH-hhCCCCChhHeEEE--ECCEEccCCCCHHHcCCCCCCEEEE
Confidence 478899999999999999 5888 99999998 8999999999999999999998874
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.51 E-value=2.2e-14 Score=87.97 Aligned_cols=55 Identities=27% Similarity=0.538 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||.+||++|++ ..++++++|+|. ++|+.|+|++||++||+++|++|++
T Consensus 10 ~~v~~~~tV~~lK~~i~~-~~~~~~~~~~L~--~~G~~L~d~~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAE-ETGIPPEQQRLI--YNGKELDDDKTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EEEETTSBHHHHHHHHHH-HHTSTGGGEEEE--ETTEEESTTSBTGGGTTSTTEEEEE
T ss_pred EEECCCCCHHHhhhhccc-ccccccccceee--eeeecccCcCcHHHcCCCCCCEEEE
Confidence 478999999999999999 588999999998 9999999999999999999999875
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.50 E-value=2.4e-14 Score=91.90 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=49.2
Q ss_pred CcccCCCcHHHHHHHHHhHhC-CCCccceeEEeccCCeecCCcchhhhcC--CCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKS-QLYPDRQAVRLEIKGKILKDSDDVKSLG--LKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~-~i~~~rQrL~l~~~Gk~L~D~ktL~~~g--i~~g~tL~v 58 (107)
+++++++||++||++|++..+ ..++++|||+ |+||.|+|++||++|+ +.+|.|||+
T Consensus 18 ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI--y~GKiLkD~~tL~~~~~~~~~~~tiHL 76 (79)
T cd01790 18 VSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI--YSGKLLPDHLKLRDVLRKQDEYHMVHL 76 (79)
T ss_pred EecCCcChHHHHHHHHHHhcCCCCChhHeEEE--EcCeeccchhhHHHHhhcccCCceEEE
Confidence 356899999999999998543 3568999999 9999999999999996 999999986
No 20
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.50 E-value=2.6e-14 Score=90.15 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..|+|+++|+|. ++|+.|+|+++|++||+++|++|++
T Consensus 12 l~v~~~~TV~~lK~~i~~-~~gip~~~q~L~--~~G~~L~d~~tL~~~~i~~g~~l~v 66 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHE-ETGMPAGKQKLQ--YEGIFIKDSNSLAYYNLANGTIIHL 66 (76)
T ss_pred EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCEEcCCCCcHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999998864
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=2.7e-14 Score=87.95 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..|+++++|||. ++|+.|.|+++|++||+++|++|++
T Consensus 14 i~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 14 LSISSQATFGDLKKMLAP-VTGVEPRDQKLI--FKGKERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEECCCCcHHHHHHHHHH-hhCCChHHeEEe--eCCcccCccCcHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 8999999999999999999999986
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.50 E-value=3.4e-14 Score=88.28 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 ~~v~~~~tV~~lK~~i~~-~~g~~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred EEECCcCcHHHHHHHHHH-HhCCCHHHeEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 478899999999999999 689999999998 8999999999999999999998874
No 23
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.49 E-value=5e-14 Score=87.54 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=51.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 ~~v~~~~tv~~lK~~i~~-~~g~~~~~qrL~--~~g~~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred EEECCCCCHHHHHHHHhH-hhCCChhhEEEE--ECCeEccCCCCHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 9999999999999999999998874
No 24
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.48 E-value=4.5e-14 Score=89.17 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEe-ccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l-~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
|+|++++||++||++|++ ..++|++||+|.. .++|+.|+|+.+|++||+++|++|++
T Consensus 14 v~v~~~~Tv~~lK~~i~~-~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 14 VTTLSEDTVLDLKQFIKT-LTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEECCCCCHHHHHHHHHH-HHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEE
Confidence 578999999999999999 6899999999982 13899999999999999999999876
No 25
>PTZ00044 ubiquitin; Provisional
Probab=99.48 E-value=4.8e-14 Score=88.20 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=51.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..|+|+++|||. ++|+.|+|+++|++||++++++|++
T Consensus 15 l~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 15 FNFEPDNTVQQVKMALQE-KEGIDVKQIRLI--YSGKQMSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred EEECCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEEccCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999998874
No 26
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.47 E-value=6.6e-14 Score=86.18 Aligned_cols=56 Identities=20% Similarity=0.431 Sum_probs=51.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+++++++||.+||++|++ ..|+++++|+|. ++|+.|+|+++|++||+++|++|++-
T Consensus 15 ~~v~~~~tv~~lK~~i~~-~~gi~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 15 FTVEEEITVLDLKEKIAE-EVGIPVEQQRLI--YSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 367899999999999999 689999999998 89999999999999999999999863
No 27
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.39 E-value=4.1e-13 Score=85.10 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=48.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCC-CCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLK-NGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~-~g~tL~v 58 (107)
+++++++||++||++|++ +.|+|+++||| ++|+.|. |+++|++||++ +|+++|+
T Consensus 17 l~v~~~~TV~~lK~kI~~-~~gip~~~QrL---~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 17 LTVRPDMTVAQLKDKVFL-DYGFPPAVQRW---VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHEEE---EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 478999999999999999 69999999998 6788885 77899999999 7898875
No 28
>KOG0005|consensus
Probab=99.38 E-value=2.7e-13 Score=82.88 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=52.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++|+++|+.+|+.+++ ++|+||.+|||+ |.||++.|++|-++|++..|+.||+
T Consensus 15 idIep~DkverIKErvEE-keGIPp~qqrli--~~gkqm~DD~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YAGKQMNDDKTAAHYNLLGGSVLHL 69 (70)
T ss_pred EeeCcchHHHHHHHHhhh-hcCCCchhhhhh--hccccccccccHHHhhhccceeEee
Confidence 478999999999999999 799999999998 9999999999999999999999885
No 29
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.36 E-value=1.3e-12 Score=78.99 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=53.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+++++++||++||++|++ ..++++++|+|. ++|+.|+|+.+|++|+++++++|+++++
T Consensus 12 ~~~~~~~ti~~lK~~i~~-~~~~~~~~~~l~--~~g~~l~d~~~l~~~~v~~~~~i~v~~~ 69 (69)
T cd01769 12 LEVSPDDTVAELKAKIAA-KEGVPPEQQRLI--YAGKILKDDKTLSDYGIQDGSTLHLVLR 69 (69)
T ss_pred EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence 357889999999999999 578999999997 8999999999999999999999999864
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.32 E-value=1.7e-12 Score=77.54 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=47.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~ 54 (107)
+++++++||++||++|++ ..++++++|+|. ++|+.|+|+++|++||+++|+
T Consensus 14 ~~v~~~~tv~~lk~~i~~-~~~~~~~~~~L~--~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 14 LEVKPSDTVSELKEKIAE-LTGIPVEQQRLI--YKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCEECCCCCCHHHcCCcCCC
Confidence 468899999999999999 689999999998 889999999999999999875
No 31
>KOG0004|consensus
Probab=99.31 E-value=9.2e-13 Score=93.53 Aligned_cols=55 Identities=22% Similarity=0.452 Sum_probs=51.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|+++++||.++|++|++ +++||+++|||+ +.|++|+|.+||+||+|+..+|||+
T Consensus 15 ~eve~~~ti~~~Kakiq~-~egIp~dqqrli--fag~qLedgrtlSDY~Iqkestl~l 69 (156)
T KOG0004|consen 15 LEVEANDTIDNVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 69 (156)
T ss_pred eeecccccHHHHHHhhhc-ccCCCchhhhhh--hhhcccccCCccccccccccceEEE
Confidence 378999999999999999 799999999998 9999999999999999999999874
No 32
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.28 E-value=6.2e-12 Score=83.88 Aligned_cols=56 Identities=29% Similarity=0.459 Sum_probs=50.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||.+||.+|+. +.+++|++|+|. ++|+.|. |++||++|||.+|+.|+++
T Consensus 19 L~V~~~~TVg~LK~lImQ-~f~V~P~dQkL~--~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 19 LLVSANQTLKELKIQIMH-AFSVAPFDQNLS--IDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred EEeCccccHHHHHHHHHH-HhcCCcccceee--ecCceeccCCccHHhcCCCCCCEEEEE
Confidence 478999999999999999 689999999998 6699995 6789999999999998865
No 33
>KOG0003|consensus
Probab=99.24 E-value=6.4e-13 Score=89.74 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=56.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--EeccCCcch
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDLGPQIG 66 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDlGpQi~ 66 (107)
++++|++||+++|++|.. ++|+|+++|+|+ ++|++|+|..|+++||++..+||+ .|=+|--|+
T Consensus 15 le~EpS~ti~~vKA~i~~-~~Gi~~~~~~L~--~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~ 79 (128)
T KOG0003|consen 15 LEVEPSDTIDNVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (128)
T ss_pred EEecccchHHHHHHHhcc-ccCCCHHHHHHH--hcccccccCCcccccCccchhhhhhhHHHhcCCCC
Confidence 578999999999999999 799999999988 999999999999999999988764 666676554
No 34
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.23 E-value=9.5e-12 Score=84.46 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=45.9
Q ss_pred ccCCCcHHHHHHHHHhHh----CC--CCccceeEEeccCCeecCCcchhhhcC------CCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAK----SQ--LYPDRQAVRLEIKGKILKDSDDVKSLG------LKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~----~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~g------i~~g~tL~v 58 (107)
+++++||++||++|++.. ++ .++++|||+ |+||.|+|++||++|+ +...+|+|+
T Consensus 22 ~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI--ysGKiLeD~~TL~d~~~p~g~~~~~~~TmHv 87 (113)
T cd01814 22 YPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI--SAGKILENSKTVGECRSPVGDIAGGVITMHV 87 (113)
T ss_pred cChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE--eCCeecCCCCcHHHhCCcccccCCCceEEEE
Confidence 578999999999999533 33 449999999 9999999999999999 666778775
No 35
>KOG0010|consensus
Probab=99.20 E-value=1.4e-11 Score=100.49 Aligned_cols=55 Identities=27% Similarity=0.506 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+.|..++||++||++|++ ..+++++||+|+ |.||+|||++||..|||+||.|||+
T Consensus 29 ~~V~~~ssV~qlKE~I~~-~f~a~~dqlvLI--faGrILKD~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 29 VNVASDSSVLQLKELIAQ-RFGAPPDQLVLI--YAGRILKDDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred EecccchHHHHHHHHHHH-hcCCChhHeeee--ecCccccChhhHHHcCCCCCcEEEE
Confidence 467899999999999999 579999999998 9999999999999999999999984
No 36
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=3e-11 Score=96.51 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=50.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCC---CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~---i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
|+|++++||.+||++|++ ..| +++++|||+ ++||.|+|+++|++|||+++++|++
T Consensus 15 IeV~~~~TV~dLK~kI~~-~~g~~~ip~~~QkLI--y~GkiL~Dd~tL~dy~I~e~~~Ivv 72 (378)
T TIGR00601 15 IDMEPDETVKELKEKIEA-EQGKDAYPVAQQKLI--YSGKILSDDKTVREYKIKEKDFVVV 72 (378)
T ss_pred EEeCCcChHHHHHHHHHH-hhCCCCCChhHeEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 578999999999999999 466 999999998 9999999999999999999998874
No 37
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.16 E-value=6.3e-11 Score=76.59 Aligned_cols=55 Identities=16% Similarity=0.356 Sum_probs=51.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|.+++|++.||+++++ +.++++++|||. |+|+.|++++|+++||+++|++|++
T Consensus 26 ~~v~~~~~l~~l~~~y~~-~~gi~~~~~rf~--f~G~~L~~~~T~~~l~m~d~d~I~v 80 (87)
T cd01763 26 FKIKRSTPLKKLMEAYCQ-RQGLSMNSVRFL--FDGQRIRDNQTPDDLGMEDGDEIEV 80 (87)
T ss_pred EEEcCCCHHHHHHHHHHH-HhCCCccceEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence 368899999999999999 689999999998 9999999999999999999999875
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.15 E-value=9.1e-11 Score=75.58 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=51.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-----ec-CCcchhhhcCCCCCceEEEeccCC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----IL-KDSDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-----~L-~D~ktL~~~gi~~g~tL~vKDlGp 63 (107)
.++++.||.+||++++. ..|++|+.|||.+ ++|+ .| +|+++|++||+++|++|||.|.=|
T Consensus 18 r~~~~~Tv~~lK~kl~~-~~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~p 83 (84)
T cd01789 18 KYSRGLTIAELKKKLEL-VVGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVSG 83 (84)
T ss_pred ecCCCCcHHHHHHHHHH-HHCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCCC
Confidence 37899999999999999 6899999999963 4444 36 678899999999999999999765
No 39
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.09 E-value=1.6e-10 Score=74.36 Aligned_cols=62 Identities=24% Similarity=0.428 Sum_probs=48.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEec--cCCe---ec-CCcchhhhcCCCCCceEEEeccCCc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK---IL-KDSDDVKSLGLKNGDMVFIKDLGPQ 64 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~--~~Gk---~L-~D~ktL~~~gi~~g~tL~vKDlGpQ 64 (107)
.++++.||.+||++|+. ..|++++.|+|.+. .++. .+ +|+++|.+||+++|.+|+|.|..|+
T Consensus 19 r~~~~~Tv~eLK~kl~~-~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p~ 86 (87)
T PF14560_consen 19 RFPKSITVSELKQKLEK-LTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNPS 86 (87)
T ss_dssp EEETTSBHHHHHHHHHH-HHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T--
T ss_pred EcCCCCCHHHHHHHHHH-HhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCCC
Confidence 46789999999999999 68999999999864 2332 34 4678999999999999999999885
No 40
>KOG0011|consensus
Probab=98.76 E-value=8e-09 Score=81.06 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=50.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCC--CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQ--LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++.|+.||.++|++|+. ..| +++++|+|+ ++||.|+|+.|+.+|+++++..|+|
T Consensus 15 iev~Pe~tV~evK~kIet-~~g~dyP~~~QkLI--y~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 15 IEVKPEDTVVEVKKKIET-EKGPDYPAEQQKLI--YSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred eecCcchhHHHHHHHHHh-ccCCCCchhhheee--ecceeccCCcchhhhccccCceEEE
Confidence 578999999999999998 455 999999998 9999999999999999999997765
No 41
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.69 E-value=2.1e-08 Score=61.80 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=48.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCc-cceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~-~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
.|.+++|+..|++.+++ ..++++ +..+|. |+|+.|.+++|++++|+++|++|.+.
T Consensus 16 ~v~~~~~~~~l~~~~~~-~~~i~~~~~~~l~--fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 16 KVKPTTTVSKLIEKYCE-KKGIPPEESIRLI--FDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEETTSCCHHHHHHHHH-HHTTTT-TTEEEE--ETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EECCCCcHHHHHHHHHH-hhCCCccceEEEE--ECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 57899999999999999 588999 888888 99999999999999999999999763
No 42
>KOG0001|consensus
Probab=98.58 E-value=1.6e-07 Score=55.85 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=50.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++.+..+|..+|.+|+. ..++++++|++. +.|+.|.|+.++.+|+|..++++++.
T Consensus 15 ~~~~~~~i~~~k~~i~~-~~~~~~~~q~~~--~~~~~l~d~~~l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 15 EVSPSDTIEVVKAKIRD-KEGIPVDQQRLI--FGGKPLEDGRTLADYNIQEGSTLHLV 69 (75)
T ss_pred EecCCCHHHHHHHHHHh-hcCCCCeeEEEE--ECCEECcCCCcHHHhCCCCCCEEEEE
Confidence 57889999999999999 689999999987 88999999999999999999998743
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.45 E-value=2.6e-07 Score=63.06 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=43.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~ 52 (107)
+++.++.||.+||++|+. .-+-+|+.|||. ..+..|+|++||++||+.+
T Consensus 16 ~dakes~tVlelK~~ieg-I~k~pp~dQrL~--kd~qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 16 TDAKESTTVYELKRIVEG-ILKRPPEDQRLY--KDDQLLDDGKTLGDCGFTS 64 (119)
T ss_pred eecCCcccHHHHHHHHHH-HhcCChhHheee--cCceeecccccHHHcCccc
Confidence 367899999999999999 578899999997 6678899999999999943
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.37 E-value=1.1e-06 Score=49.29 Aligned_cols=56 Identities=36% Similarity=0.538 Sum_probs=49.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
.+++++|++++|++|.+ +.+.++++++|. .+|..+++...+.++++.+++++++..
T Consensus 13 ~~~~~~tv~~l~~~i~~-~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 13 LVPSGTTVADLKEKLAK-KLGLPPEQQRLL--VNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EcCCCCcHHHHHHHHHH-HHCcChHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 45689999999999999 567899999998 889999988888899999999998764
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.35 E-value=2.7e-07 Score=59.14 Aligned_cols=59 Identities=34% Similarity=0.541 Sum_probs=35.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC-eec--CCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G-k~L--~D~ktL~~~gi~~g~tL~vKD 60 (107)
|++++++|+.+||++|++ ..+++.+.|.|....++ ..+ .+++||+++|++.|+-||++-
T Consensus 18 ie~~~~~t~~~L~~kI~~-~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 18 IEVSPSSTLSDLKEKISE-QLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp EEE-TTSBHHHHHHHHHH-HS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred EEcCCcccHHHHHHHHHH-HcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence 578999999999999999 57899999988654443 345 467899999999999999873
No 46
>KOG4248|consensus
Probab=98.12 E-value=2.4e-06 Score=75.17 Aligned_cols=55 Identities=16% Similarity=0.487 Sum_probs=51.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+...+||+++|..|.+ +-+|+.+.|||+ +.|++|.|+|++.+||| +|-+||+-|=
T Consensus 19 ig~q~ti~~~~d~~r~-~~ni~s~~qr~i--~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 19 IGAQMTIKEFKDHIRA-SVNIPSEKQRLI--YQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred echHHHHHHHHHHHHH-hcccccccceee--ecceeeccchhhhhccC-CCeEEEeecc
Confidence 5567899999999999 689999999999 99999999999999999 9999998876
No 47
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.91 E-value=2.2e-05 Score=53.21 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=35.9
Q ss_pred cccCCCcHHHHHHHHHhHh----CC--CCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731 2 EVSGSFTVKDIKKEVHKAK----SQ--LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~----~~--i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~ 54 (107)
..++++||.+||+.|...- +. ..++..||+ +.||.|+|++||+++++..|.
T Consensus 19 ~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI--~~GriL~d~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 19 RFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLI--YAGRILEDNKTLSDCRLPSGE 75 (111)
T ss_dssp EE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEE--ETTEEE-SSSBTGGGT--TTS
T ss_pred ccCccChHHHHHHHHHHHCccccccCCCChhhEEEE--eCCeecCCcCcHHHhCCCCCC
Confidence 4578999999999998631 11 234555666 999999999999999887654
No 48
>KOG4495|consensus
Probab=97.65 E-value=3.5e-05 Score=51.35 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=41.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~ 52 (107)
+.+++.||.+||.+++. ...-|++.|||.+-..-..|.|.+||+++|..+
T Consensus 17 da~es~tV~elK~~l~g-i~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 17 DAKESSTVFELKRKLEG-ILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred ecCccccHHHHHHHHHH-HHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 56899999999999999 566799999997433346789999999997654
No 49
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.43 E-value=0.00022 Score=47.26 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS 47 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~ 47 (107)
.++||..||++|-+. -.-.+++.||++.++|+.|.|+..|+.
T Consensus 22 ~~~Tv~~LK~lIR~~-~p~~~s~~rLRlI~~Gr~L~d~t~l~~ 63 (97)
T PF10302_consen 22 NTTTVAWLKQLIRER-LPPEPSRRRLRLIYAGRLLNDHTDLSS 63 (97)
T ss_pred CcccHHHHHHHHHhh-cCCCCccccEEeeecCcccCccchhhh
Confidence 789999999999995 334566666777799999999887654
No 50
>KOG3493|consensus
Probab=97.39 E-value=3.5e-05 Score=47.90 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=44.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
|...+++||.|+|..|+. ..|..+++..|. --+...+|.-+|++|.+.+|..+
T Consensus 16 vKCn~dDtiGD~KKliaa-QtGT~~~kivl~--k~~~i~kd~I~L~dyeihdg~~l 68 (73)
T KOG3493|consen 16 VKCNTDDTIGDLKKLIAA-QTGTRPEKIVLK--KWYTIFKDHITLSDYEIHDGMNL 68 (73)
T ss_pred EEeCCcccccCHHHHHHH-hhCCChhHhHHH--hhhhhhhcccceeeEEeccCccE
Confidence 356799999999999999 589999987764 44567799999999999998754
No 51
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.33 E-value=0.00056 Score=43.63 Aligned_cols=56 Identities=13% Similarity=0.288 Sum_probs=43.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccC-C--eecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK-G--KILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~-G--k~L~D~ktL~~~gi~~g~tL~vK 59 (107)
.|+|..+|..+|++|.+. -++ ..+|||.+... | ..|.+.+||++|||=+...|.+-
T Consensus 16 ~vnPy~pI~k~K~kI~~~-~~~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 16 RVNPYSPIRKIKEKIRRS-RNC-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred EeCCcchHHHHHHHHHHh-hCc-ccceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 578999999999999993 444 55999986433 3 34688999999999877776653
No 52
>KOG1872|consensus
Probab=97.31 E-value=0.00035 Score=57.37 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=49.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++.++|+..+|+++.. ..|.+|+||++. .+|+.++|+-.....+|+++.+|++
T Consensus 20 l~~d~t~~vlKaqlf~-LTgV~PeRQKv~--vKGg~a~dd~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 20 LSTDETPSVLKAQLFA-LTGVPPERQKVM--VKGGLAKDDVDWGALQIKPNETLMM 72 (473)
T ss_pred ccCCCchHHHHHHHHH-hcCCCccceeEE--EecccccccccccccccCCCCEEEe
Confidence 7899999999999999 699999999987 9999999997788899999999985
No 53
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.28 E-value=0.00027 Score=44.60 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=38.7
Q ss_pred cccCCCcHHHHHHHHHhHhCCC---Cccce-eEEec-cCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQL---YPDRQ-AVRLE-IKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i---~~~rQ-rL~l~-~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
.++.+.+|++|...+.+. -+. .+..+ .+.+. .+|..|++++||+++||.+|+.|+++
T Consensus 18 ~lP~~vpv~~li~~l~~~-~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 18 ALPADVPVAELIPELVEL-LGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEETTSBTTHHHHHHHHH-S---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EcCCCCcHHHHHHHHHHH-hCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 467889999999999883 444 22222 24555 78999999999999999999999863
No 54
>KOG0006|consensus
Probab=97.18 E-value=0.00028 Score=56.09 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=45.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
|+|+.+..|.+||+.+++ ..|+++++.|++ |.||.|.|+.|++.+.+.-.+.+|
T Consensus 18 v~v~~~t~I~~lke~Vak-~~gvp~D~L~vi--FaGKeLs~~ttv~~cDL~qqs~~h 71 (446)
T KOG0006|consen 18 VEVDSDTSIFQLKEVVAK-RQGVPADQLRVI--FAGKELSNDTTVQNCDLSQQSATH 71 (446)
T ss_pred EEEecCCCHHHHHHHHHH-hhCCChhheEEE--EeccccccCceeecccccccchhh
Confidence 478899999999999999 699999999988 999999999998866554444433
No 55
>KOG3206|consensus
Probab=96.40 E-value=0.0086 Score=44.98 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=51.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEec----cCCeecC-CcchhhhcCCCCCceEEEeccCCcc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----IKGKILK-DSDDVKSLGLKNGDMVFIKDLGPQI 65 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~----~~Gk~L~-D~ktL~~~gi~~g~tL~vKDlGpQi 65 (107)
+.+++.||+++|.++.. ..|.+++..+|-+- .++..|. +++.|..|+..+|..||+.|.-+|-
T Consensus 18 r~~~~ltl~q~K~KLe~-~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~ 85 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLEL-LTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQS 85 (234)
T ss_pred hcCCcCcHHHHHhhhhh-hhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCccc
Confidence 35789999999999999 68999999998751 1234564 5678999999999999999997764
No 56
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.04 E-value=0.015 Score=36.75 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=40.9
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc-CCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL-GLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~-gi~~g~tL~vK 59 (107)
|+++++|.|+++.+.. .+. .-..-...+..+|+.|+|...+++. |+++|++|.++
T Consensus 1 v~~~d~v~dvrq~L~~-~~~-t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAE-SPE-TCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHh-Ccc-ccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 6789999999999999 332 1122223345899999888888775 68899988765
No 57
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.57 E-value=0.039 Score=34.00 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=37.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
|.++|++|+.++-++.-+ +.++++++-.|. +++|.|+-+-++.-.|+.+|++|-
T Consensus 11 vkvtp~~~l~~VL~eac~-k~~l~~~~~~L~--h~~k~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 11 VKVTPNTTLNQVLEEACK-KFGLDPSSYDLK--HNNKPLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp E---TTSBHHHHHHHHHH-HTT--GGG-EEE--ETTEEESSS-BHHHH---SS-EEE
T ss_pred EEECCCCCHHHHHHHHHH-HcCCCccceEEE--ECCEEeccccceeecCCCCCCEEe
Confidence 467899999999888877 689999976666 999999988899999999999874
No 58
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.44 E-value=0.082 Score=33.98 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=44.6
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--------CcchhhhcCCCCCceEEEecc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--------DSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--------D~ktL~~~gi~~g~tL~vKDl 61 (107)
...++||++|.+-|.. .+ ..++.-+|...|=.|.+. .+.||++.|+.....|.|.|+
T Consensus 21 F~~~~tl~~l~~fv~~-~~-~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~d~ 85 (85)
T cd01774 21 FLFTQSLRVIHDFLFS-LK-ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQDL 85 (85)
T ss_pred eCCCCcHHHHHHHHHh-CC-CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEecC
Confidence 3578999999999977 33 456677777556567775 356999999999999999885
No 59
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.37 E-value=0.094 Score=32.79 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=43.2
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK 59 (107)
.++++||++|.+-+.. ..+.....-.|...+-.+.+.+ ++||.+.|+...++|.++
T Consensus 21 F~~~~tl~~v~~~v~~-~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 21 FPSSDTLRTVYEFVSA-ALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eCCCCcHHHHHHHHHH-cccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 4689999999999966 3555555566766677788864 479999999888888875
No 60
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.05 E-value=0.072 Score=33.17 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccc-eeEEeccCCeecCCc--chhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKGKILKDS--DDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~r-QrL~l~~~Gk~L~D~--ktL~~~gi~~g~tL~vK 59 (107)
..+++||.+|.+-|... ...+... =.|...+-.+.+.++ +||++.|+...++|+|+
T Consensus 23 F~~~~tl~~l~~~v~~~-~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 23 FPKSDTLQDLYDFVESQ-LFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EETTSBHHHHHHHHHHH-HHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred ECCcchHHHHHHHHHHh-cCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 46899999999999883 3333332 466655667888543 69999999999999886
No 61
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.89 E-value=0.16 Score=32.14 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.5
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC-CcchhhhcCCCCCc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGD 54 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~ 54 (107)
.+.++||++|.+-|....+......-.|...+-.|.|. +++||+|.|+.+..
T Consensus 21 F~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 21 FNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 46789999999999983222222344565556678885 47799999998643
No 62
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.58 E-value=0.23 Score=30.77 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=39.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK 59 (107)
.++++||.+|.+-|.. . +.....-+|...+-.+.+.| ++||++.|+. .+.+.++
T Consensus 19 F~~~~tl~~l~~fv~~-~-~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 19 FNSTHKLSDVRDFVES-N-GPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred eCCCCCHHHHHHHHHH-c-CCCCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4689999999999988 2 23344456665667788854 6799999998 4555544
No 63
>KOG1769|consensus
Probab=94.37 E-value=0.12 Score=34.44 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=47.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|.-+++.+.|.+...+ +.|++.+..|+. |+|+.+++.+|=++.+.++|++|-+
T Consensus 36 kikr~t~LkKLM~aYc~-r~Gl~~~s~RFl--FdG~rI~~~~TP~~L~mEd~D~Iev 89 (99)
T KOG1769|consen 36 KIKRHTPLKKLMKAYCE-RQGLSMNSLRFL--FDGQRIRETHTPADLEMEDGDEIEV 89 (99)
T ss_pred EeecCChHHHHHHHHHH-HcCCccceEEEE--ECCcCcCCCCChhhhCCcCCcEEEE
Confidence 35567888999999999 689999999988 9999999999999999999998854
No 64
>KOG0013|consensus
Probab=94.31 E-value=0.069 Score=40.25 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=44.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~ 54 (107)
+..-+|+.++|.+++. ..+.++-.||+. ++|+.|-|...|+++++..|.
T Consensus 163 a~~~Dtv~eik~~L~A-aeg~D~~sQrif--~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 163 APHYDTVGEIKRALRA-AEGVDPLSQRIF--FSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred ccCcCcHHHHHHHHHH-hhccchhhheee--ccCCceeccccceeeeecCCC
Confidence 4567899999999999 689999999988 999999999999999999995
No 65
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.77 E-value=0.38 Score=30.16 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=41.8
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vK 59 (107)
.+.++|+++|.+-+.. ..+ ....-.|...+-.|.+.+ ++||++.|+...++|++-
T Consensus 21 F~~~~tl~~v~~fV~~-~~~-~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 21 FKAREQLAAVRLFVEL-NTG-NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred eCCCChHHHHHHHHHH-cCC-CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4678999999999987 332 234456766677888864 479999999999888764
No 66
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=91.94 E-value=0.26 Score=31.74 Aligned_cols=58 Identities=26% Similarity=0.460 Sum_probs=40.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeec--------CC------cchhhhcCCCCCceEEEeccC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--------KD------SDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L--------~D------~ktL~~~gi~~g~tL~vKDlG 62 (107)
|+++++.|.+++-+.+.+ .+.+...+=.|+ .+++.| +. +++|.+. +.+|..|+|-|-.
T Consensus 1 i~v~~~~TL~~lid~L~~-~~~~qlk~PSlt--~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCE-KPEFQLKKPSLT--TANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHH-STTT--SS-EEE--SSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETT
T ss_pred CCcCccchHHHHHHHHHh-ChhhhcCCCccc--CCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCC
Confidence 578999999999999999 565554444454 444432 21 4678888 8999999998863
No 67
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.75 E-value=1.5 Score=28.19 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=44.8
Q ss_pred cCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC---cchhhhcCCCCCceEEEec
Q psy12731 4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D---~ktL~~~gi~~g~tL~vKD 60 (107)
..++|+++|-.-+.. .+.+++.-.|...+=.|.+.. +.||++.|+....+|+|-|
T Consensus 23 ~~~~~L~~v~~fv~~--~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 23 PEQAKLLALVRHVQS--KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCCCcHHHHHHHHHh--cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 467899999998888 367888888876677777742 4699999999999998865
No 68
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=89.97 E-value=0.49 Score=30.49 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHhHhCCCCccc----eeEEeccCCe---ecCCcchhhhcCCCCCceEEEeccCCcchhh
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDR----QAVRLEIKGK---ILKDSDDVKSLGLKNGDMVFIKDLGPQIGWS 68 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~r----QrL~l~~~Gk---~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wr 68 (107)
..+|+.+|-++|-+.+-|+..-. .++.. ..+- .-..+++|+++||++|+.|.+.|.=-...|+
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ily-d~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q~~~~~ 76 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILY-DSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQDFNLE 76 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE--SSSSSSTTCTTSBGGGGT--TT-EEEEEETTTTEEEE
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEE-cCCcchhhhcccCChhHcCCCCCCEEEEEEcCCCcEEE
Confidence 46899999998876444443311 12221 1121 2223578999999999999999986555554
No 69
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.92 E-value=1.2 Score=30.78 Aligned_cols=56 Identities=32% Similarity=0.415 Sum_probs=37.5
Q ss_pred ccC-CCcHHHHHHHHHhH---hCCCCcccee------EEe--------------ccC-Ceec---CCcchhhhcCCCCCc
Q psy12731 3 VSG-SFTVKDIKKEVHKA---KSQLYPDRQA------VRL--------------EIK-GKIL---KDSDDVKSLGLKNGD 54 (107)
Q Consensus 3 v~~-~~TV~~LK~~I~~~---~~~i~~~rQr------L~l--------------~~~-Gk~L---~D~ktL~~~gi~~g~ 54 (107)
|+. +.||+||++.+.+. .++++|-|-. |.- ..+ +-.| ++++||.++||.+++
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 454 88999998877763 4667766642 111 011 1345 677899999999999
Q ss_pred eEEE
Q psy12731 55 MVFI 58 (107)
Q Consensus 55 tL~v 58 (107)
+|-+
T Consensus 102 EiSf 105 (122)
T PF10209_consen 102 EISF 105 (122)
T ss_pred eeee
Confidence 9854
No 70
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.89 E-value=0.89 Score=28.18 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=30.8
Q ss_pred cccCC-CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGS-FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~-~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++ +||.+|++.+.++.+.+-..+..+..-.+++...+ +.-+++|++|-+
T Consensus 21 ~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai 73 (80)
T TIGR01682 21 ELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAF 73 (80)
T ss_pred ECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEE
Confidence 45656 89999999999853332221222222245655553 456788888754
No 71
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.38 E-value=2.7 Score=26.52 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=43.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--C-cchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D-~ktL~~~gi~~g~tL~vK 59 (107)
...++|+++|-+-+.. .+.++..-+|.-++=.|.+. | +.||++.|+....+|.|.
T Consensus 21 F~~t~~L~~l~~fv~~--~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 21 FLGDTPLQVLLNFVAS--KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eCCCCcHHHHHHHHHh--cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3578999999999987 36777777887667677774 2 469999999998888874
No 72
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.00 E-value=1 Score=27.38 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=31.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCC-CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i-~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++.||.+|.+.+.++.+.. ...+..+..-.+|+..+ .+.-+++|++|.+
T Consensus 21 ~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i 73 (80)
T cd00754 21 ELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAI 73 (80)
T ss_pred ECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEE
Confidence 4556899999999999843320 00122222225676665 3345788888865
No 73
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=87.95 E-value=0.58 Score=29.12 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=31.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++.++||.+|++.+..+.+++...+.....-.+|+... .+.-+++|++|-+
T Consensus 24 ~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 24 ELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred ECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 567789999999999874444333222222224565543 2334678888754
No 74
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=87.31 E-value=2.5 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccce-eEEeccCCeec--CCcchhhhcCCCCC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQ-AVRLEIKGKIL--KDSDDVKSLGLKNG 53 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQ-rL~l~~~Gk~L--~D~ktL~~~gi~~g 53 (107)
.+++++||.+|+..|.+ ..+++...| .|.. ..++.| .++..+.++.-.+.
T Consensus 20 ~lp~~ttv~dL~~~l~~-~~~~~~~~~~~L~~-~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 20 SLPSTTTVSDLKDRLSE-RLPIPSSSQLYLTT-NSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred eCCCCCcHHHHHHHHHh-hcCCCccceeEEEE-eCCCeeCCCccccHHhhccCcC
Confidence 56789999999999999 577777775 2432 334444 44555666654443
No 75
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=87.10 E-value=0.48 Score=28.65 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=36.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++...||.+|.+.+..+.+.+. .+.++....+|+...+ .-.+.-+++|++|.+
T Consensus 17 ~~~~~~tv~~ll~~l~~~~p~~~-~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 17 EVPEGSTVRDLLEALAERYPELA-LRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAI 70 (77)
T ss_dssp EESSTSBHHHHHHHHCHHTGGGH-TTTTEEEEETTEEEGG--GTTTSBEETTEEEEE
T ss_pred ecCCCCcHHHHHHHHHhhccccc-cCccEEEEECCEEcCC--ccCCcCcCCCCEEEE
Confidence 45678999999999998543332 2233333367877776 244566788888865
No 76
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=86.89 E-value=2.1 Score=26.75 Aligned_cols=55 Identities=15% Similarity=0.361 Sum_probs=37.5
Q ss_pred ccCCCcHHHHHHHHHh--HhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHK--AKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~--~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.++++..--+.++--+ ...+-|++...|. +.+|..|+-++.++|+|+.+|-+|++
T Consensus 12 ANvnaPLh~v~akALe~sgNvgQP~ENWElk-De~G~vlD~~kKveD~GftngvkLFL 68 (76)
T PF10790_consen 12 ANVNAPLHPVRAKALEQSGNVGQPPENWELK-DESGQVLDVNKKVEDFGFTNGVKLFL 68 (76)
T ss_pred cCCCCcchHHHHHHHhhccccCCCcccceee-ccCCcEeeccchhhhccccccceEEE
Confidence 3444444444333222 1345678887775 47899999999999999999998864
No 77
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.33 E-value=4 Score=26.62 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=35.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccC--C-eecCC-cchhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G-KILKD-SDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~--G-k~L~D-~ktL~~~gi~~g~tL~v 58 (107)
.+..+||+.++..+.+ ...+ ...-||...+. + -.|.+ +.|+++.|+.+|-+|.+
T Consensus 20 FSk~DTI~~v~~~~rk-lf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 20 FSKTDTIGFVEKEMRK-LFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp E-TTSBHHHHHHHHHH-HCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred ccccChHHHHHHHHHH-HhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 4678999999999999 4677 55567763332 2 34655 46999999999988764
No 78
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=84.84 E-value=2.4 Score=26.51 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHhHhCCCCc----cce----eEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 6 SFTVKDIKKEVHKAKSQLYP----DRQ----AVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~----~rQ----rL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.+||.+|.+.+.++.++... +.- .+..-.+|+..+++.. .-+++|++|.+
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i 81 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAI 81 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEE
Confidence 78999999999985432111 100 0111145555543321 45788888865
No 79
>COG5417 Uncharacterized small protein [Function unknown]
Probab=83.22 E-value=2.6 Score=26.97 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=35.4
Q ss_pred cCCCcHHHHHHHHHhHhCCC---CccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 4 SGSFTVKDIKKEVHKAKSQL---YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i---~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+.--+|+.+-....+ ..++ +.+--.++...+++.|.++..|.+|+|.+|+-|.+
T Consensus 24 ~d~~pikklIdivwe-~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 24 PDYLPIKKLIDIVWE-SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred cccchHHHHHHHHHH-HhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 444566666555555 2332 23322344448899999999999999999997753
No 80
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=81.02 E-value=4.2 Score=24.68 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=38.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCC-ccceeEEe--ccCC--eecCCcchhhhcCCC--CCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLY-PDRQAVRL--EIKG--KILKDSDDVKSLGLK--NGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~-~~rQrL~l--~~~G--k~L~D~ktL~~~gi~--~g~tL~vK 59 (107)
+++++++|+.++=++|.+ +-++. .+--.|.. ..+| ..|+.+++|.+.... ...+++++
T Consensus 11 ~~v~~~~t~~~l~~~v~~-~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 11 FEVDPKTTGQDLLEQVCD-KLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEEETTSBHHHHHHHHHH-HHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred EEEcCCCcHHHHHHHHHH-HcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 368899999999999999 56764 22234543 2233 457888899888766 33456654
No 81
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=80.67 E-value=1.3 Score=24.53 Aligned_cols=19 Identities=26% Similarity=0.516 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHhhccccc
Q psy12731 75 YAGPLFVYLIFYYRPWIFY 93 (107)
Q Consensus 75 Y~GPl~i~~lf~~~~~~iy 93 (107)
|.|.|+|+.+-.+|++|++
T Consensus 20 y~GlLlifvl~vLFssYff 38 (39)
T PRK00753 20 YLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 8899999988888888775
No 82
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=80.05 E-value=5.3 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=41.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCC------CccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQL------YPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i------~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
++.+..|.|+--.|-+ .-+- .+...+|. ..+|.+|+.++||.+.||.||+.|++.-
T Consensus 18 LPa~~PvaellP~ll~-~~~~~~~~~~~~~~w~L~-r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 18 LPADVPVAELIPDLVD-LLDDRGAAELGAVRWALA-RAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred cCCCCcHHHHHHHHHH-HhCcccccCCCCcceEEe-cCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 4678888998888877 3321 12233332 3679999999999999999999998764
No 83
>KOG2086|consensus
Probab=79.45 E-value=3.5 Score=33.51 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=42.2
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC-cchhhhcCCCCCc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDVKSLGLKNGD 54 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D-~ktL~~~gi~~g~ 54 (107)
++.+-||.|++.-|...+++.+.+-+-|...|=-|.|.| +.||++.|+.+..
T Consensus 322 fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 322 FNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred ccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 456789999999999877887777777776677899965 5699999997754
No 84
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=79.03 E-value=3.1 Score=26.69 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=26.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
|.++++.+..+|.++|++ +.++++++..|.
T Consensus 15 Irvp~~~~y~~L~~ki~~-kLkl~~e~i~Ls 44 (80)
T cd06406 15 IQVARGLSYATLLQKISS-KLELPAEHITLS 44 (80)
T ss_pred EEcCCCCCHHHHHHHHHH-HhCCCchhcEEE
Confidence 467899999999999999 688998888887
No 85
>KOG2982|consensus
Probab=77.97 E-value=3 Score=33.74 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEE-eccCCeec-----CCcchhhhcCCCCCceEEE
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGKIL-----KDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~Gk~L-----~D~ktL~~~gi~~g~tL~v 58 (107)
-.-||.|++..+.. +-|..+.|.||. +..+||.- .-.+.|-.|+|++|+.+.+
T Consensus 356 ~~~TV~D~~~~Ld~-~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 356 MTRTVLDFMKILDP-KVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eehHHHHHHHHhcc-ccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 34699999999999 689999999997 44556543 3356788999999998765
No 86
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=76.18 E-value=11 Score=26.42 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=37.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEe--ccC--C--eecCCcchhhhcCCC-CCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL--EIK--G--KILKDSDDVKSLGLK-NGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l--~~~--G--k~L~D~ktL~~~gi~-~g~tL~vK 59 (107)
+.+++++|++++.+.+.+ +.|+ ++.+-..| ... + ..|+.++++.+...+ ....+++|
T Consensus 18 ~~~~~~~t~~ev~~~v~~-~~~l-~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 18 FEVDSSTTAEELLETVCR-KLGI-RESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEECCCCCHHHHHHHHHH-HhCC-CccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 357899999999999999 6788 34443322 111 1 356667777777655 34456555
No 87
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=76.14 E-value=4 Score=34.66 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=32.3
Q ss_pred cccCCCcHHHHHHHHHhHh-CCCCccceeEE-----e----ccCCe-ecCCc-------------chhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAK-SQLYPDRQAVR-----L----EIKGK-ILKDS-------------DDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~-~~i~~~rQrL~-----l----~~~Gk-~L~D~-------------ktL~~~gi~~g~tL~ 57 (107)
.|=..+||.++|++|-+.. .+.|-++ |-. | ...|. .|.|+ .||.+|+|.+|+++-
T Consensus 207 kVLdCDTItQVKeKiLDavyk~~p~S~-rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~va 285 (539)
T PF08337_consen 207 KVLDCDTITQVKEKILDAVYKNTPYSQ-RPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGATVA 285 (539)
T ss_dssp EEETTSBHHHHHHHHHHHHTTTS-GGG-S--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEEEE
T ss_pred EEEecCcccHHHHHHHHHHHcCCCCCC-CCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCceEE
Confidence 3456789999999999853 2333322 211 1 12233 45543 169999999999875
Q ss_pred E
Q psy12731 58 I 58 (107)
Q Consensus 58 v 58 (107)
+
T Consensus 286 L 286 (539)
T PF08337_consen 286 L 286 (539)
T ss_dssp E
T ss_pred E
Confidence 3
No 88
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=74.73 E-value=17 Score=23.23 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.+||+++..+ +.+++.+--+|.|..+|..++|++=+.. +.+.+.+.+--.|
T Consensus 21 ~sL~EL~~K~~~-~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L~~g 73 (78)
T cd06539 21 SSLQELISKTLD-ALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVLEKG 73 (78)
T ss_pred cCHHHHHHHHHH-HhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEECCC
Confidence 578999999998 5778776778888899999988875542 4466666655444
No 89
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=4.9 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=41.7
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
+..++|...|-...++ +.|=..+.-|+. ++|+.++-++|=++.+..++..|
T Consensus 41 iKktT~f~klm~af~~-rqGK~m~slRfL--~dG~rI~~dqTP~dldmEdnd~i 91 (103)
T COG5227 41 IKKTTTFKKLMDAFSR-RQGKNMSSLRFL--FDGKRIDLDQTPGDLDMEDNDEI 91 (103)
T ss_pred EeccchHHHHHHHHHH-HhCcCcceeEEE--EcceecCCCCChhhcCCccchHH
Confidence 4567788888888888 577777777766 99999999999999998887755
No 90
>CHL00038 psbL photosystem II protein L
Probab=73.51 E-value=2.5 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHhhccccc
Q psy12731 75 YAGPLFVYLIFYYRPWIFY 93 (107)
Q Consensus 75 Y~GPl~i~~lf~~~~~~iy 93 (107)
|.|.|+|+.+-.++++|++
T Consensus 19 y~GLLlifvl~vlfssyff 37 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYFF 37 (38)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7899999988778887765
No 91
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=73.22 E-value=8.6 Score=25.62 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=35.3
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc----CCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL----GLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~----gi~~g~tL~vK 59 (107)
|+.+.||.++...|.+ +-.++++ |.|.+-.++.....+.|+++. . .++..||+.
T Consensus 39 vp~~~tv~qf~~~ir~-rl~l~~~-~alfl~Vn~~lp~~s~tm~elY~~~k-deDGFLY~~ 96 (104)
T PF02991_consen 39 VPKDLTVGQFVYIIRK-RLQLSPE-QALFLFVNNTLPSTSSTMGELYEKYK-DEDGFLYMT 96 (104)
T ss_dssp EETTSBHHHHHHHHHH-HTT--TT-S-EEEEBTTBESSTTSBHHHHHHHHB--TTSSEEEE
T ss_pred EcCCCchhhHHHHhhh-hhcCCCC-ceEEEEEcCcccchhhHHHHHHHHhC-CCCCeEEEE
Confidence 5789999999999999 5677775 677665666555777777552 3 234466653
No 92
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=73.20 E-value=3.3 Score=26.09 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=23.9
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
..|+.|+.+|+.+|.++..+++|+...+.
T Consensus 9 t~~~~tl~~L~~eI~~~f~kLYP~~~~~~ 37 (73)
T PF10407_consen 9 TDPNNTLSQLKEEIEERFKKLYPNEPELE 37 (73)
T ss_pred eCCCCcHHHHHHHHHHHHHHHCCCCCCce
Confidence 46899999999999997777888776554
No 93
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=72.20 E-value=1.2 Score=35.22 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHhH---------hCCCCcccee-----EEeccCCeecCCcchhhhcCCC
Q psy12731 6 SFTVKDIKKEVHKA---------KSQLYPDRQA-----VRLEIKGKILKDSDDVKSLGLK 51 (107)
Q Consensus 6 ~~TV~~LK~~I~~~---------~~~i~~~rQr-----L~l~~~Gk~L~D~ktL~~~gi~ 51 (107)
+.||.|+|..++.+ ..+++.+..+ |. ++.|.+-|.+||.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL--~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLL--YKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhhe--ecCccCCCcCcHHHHHhc
Confidence 68999999999982 2567777766 76 889999889998876544
No 94
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=71.60 E-value=2.3 Score=23.42 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHhhccccc
Q psy12731 75 YAGPLFVYLIFYYRPWIFY 93 (107)
Q Consensus 75 Y~GPl~i~~lf~~~~~~iy 93 (107)
|.|.|+|+.+-.++++|++
T Consensus 18 Y~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 8899999988878887765
No 95
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=71.16 E-value=7.3 Score=26.83 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=37.3
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc-C-CC-CCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL-G-LK-NGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~-g-i~-~g~tL~vK 59 (107)
|+.+.||.++...|.+ +-++++++ +.+-.++..+..+.++++. . =+ ++..||+.
T Consensus 47 VP~d~tV~qF~~iIRk-rl~l~~~k--~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~ 103 (121)
T PTZ00380 47 LPRDATVAELEAAVRQ-ALGTSAKK--VTLAIEGSTPAVTATVGDIADACKRDDGFLYVS 103 (121)
T ss_pred cCCCCcHHHHHHHHHH-HcCCChhH--EEEEECCccCCccchHHHHHHHhcCCCCeEEEE
Confidence 7899999999999999 67888887 4443456555667776552 1 12 34567764
No 96
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=69.77 E-value=25 Score=22.38 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.+||+++..+ +.+++.+--+|.|..+|...+|++=+. .+.+.+.+.+-.-|
T Consensus 21 ~sL~eL~~K~~~-~l~~~~~~~~lvL~eDGT~VddEeyF~--tLp~nT~lm~L~~g 73 (78)
T PF02017_consen 21 SSLEELLEKACD-KLQLPEEPVRLVLEEDGTEVDDEEYFQ--TLPDNTVLMLLEKG 73 (78)
T ss_dssp SSHHHHHHHHHH-HHT-SSSTCEEEETTTTCBESSCHHHC--CSSSSEEEEEEESS
T ss_pred CCHHHHHHHHHH-HhCCCCcCcEEEEeCCCcEEccHHHHh--hCCCCCEEEEECCC
Confidence 588999999998 577887777888888999999887554 34556666554444
No 97
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=69.73 E-value=13 Score=27.36 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=26.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc---ceeEEeccCCee---cCCcchhhhc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD---RQAVRLEIKGKI---LKDSDDVKSL 48 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~---rQrL~l~~~Gk~---L~D~ktL~~~ 48 (107)
-|+.+.||.||.+++++ +-+++.+ +.||.-..++|. +..+.++++.
T Consensus 39 ~vpk~~tV~Dll~~l~~-k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 39 LVPKTGTVSDLLEELQK-KVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp --BTT-BHHHHHHHHHT-T----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EECCCCCHHHHHHHHHH-HcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 36889999999999999 4566544 444443456654 5666777655
No 98
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=69.59 E-value=9.7 Score=23.69 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=31.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC--eecCCc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--KILKDS 42 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G--k~L~D~ 42 (107)
|.+.|+.||.|+-+++-+ +-++.++.-.+.+..++ +++..+
T Consensus 14 V~vrpg~ti~d~L~~~c~-kr~l~~~~~~v~~~~~~~~~~~~~~ 56 (72)
T cd01760 14 VPVRPGMSVRDVLAKACK-KRGLNPECCDVFLLGLDEKKPLDLD 56 (72)
T ss_pred EEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEecCCCcCCcCch
Confidence 457899999999999999 68999999888755455 555433
No 99
>KOG4583|consensus
Probab=69.11 E-value=2.1 Score=34.53 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=31.9
Q ss_pred cCCCcHHHHHHHHHhHhCCCC-ccceeEEeccCCeecCCcchhhhcC
Q psy12731 4 SGSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDVKSLG 49 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i~-~~rQrL~l~~~Gk~L~D~ktL~~~g 49 (107)
+-.-||++||.-++.-.++=+ ..-|||+ |+||.|.|...+.|.-
T Consensus 29 dl~wtv~~Lk~hls~VyPskpl~~dqrli--Ysgkllld~qcl~d~l 73 (391)
T KOG4583|consen 29 DLKWTVGDLKVHLSQVYPSKPLELDQRLI--YSGKLLLDHQCLTDWL 73 (391)
T ss_pred hhhhhHHHHhhhHhhcCCCCCchhhHHHH--hhccccccchhHHHHH
Confidence 345699999999998444433 3456777 9999999988776543
No 100
>PHA02146 hypothetical protein
Probab=69.08 E-value=4.8 Score=25.56 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=15.5
Q ss_pred CCcchhhhcCCCCCceEEEecc
Q psy12731 40 KDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 40 ~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+-++-..+.||++|.+..|-.+
T Consensus 13 da~rf~~ehgi~ng~ef~v~~~ 34 (86)
T PHA02146 13 DAERFMAEHGITNGTEFTVTNI 34 (86)
T ss_pred cHHHHHHHhCcCCCcEEEeecc
Confidence 3344567788888888777655
No 101
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=67.22 E-value=29 Score=21.90 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
..|.++|+.+..+ +.+++.+--+|.|..+|..++|++=+. .+.+++.+.+--.|
T Consensus 18 A~sL~eL~~K~~~-~l~l~~~~~~l~L~eDGT~VddEeyF~--tLp~nt~l~~L~~g 71 (74)
T smart00266 18 ASSLEELLSKVCD-KLALPDSPVTLVLEEDGTIVDDEEYFQ--TLPDNTELMALEKG 71 (74)
T ss_pred cCCHHHHHHHHHH-HhCCCCCCcEEEEecCCcEEccHHHHh--cCCCCcEEEEEcCC
Confidence 3578999999999 577876667788888999998887554 24455555554333
No 102
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=65.20 E-value=33 Score=21.83 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
..|.++|+.+..+ +.+++..--+|.|..+|..++|++=+.. +.+.+.+.+--
T Consensus 20 A~sL~eL~~K~~~-~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l~ 71 (78)
T cd01615 20 ASSLEELLSKACE-KLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLLE 71 (78)
T ss_pred cCCHHHHHHHHHH-HcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEEC
Confidence 3578999999999 5778766667888899999988875542 34555555533
No 103
>PRK06437 hypothetical protein; Provisional
Probab=64.77 E-value=19 Score=21.69 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=28.7
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++++||.+|-+. .+++++...+. -+|+.+. .+.-+++|++|-+
T Consensus 16 ~i~~~~tv~dLL~~-----Lgi~~~~vaV~--vNg~iv~-----~~~~L~dgD~Vei 60 (67)
T PRK06437 16 EIDHELTVNDIIKD-----LGLDEEEYVVI--VNGSPVL-----EDHNVKKEDDVLI 60 (67)
T ss_pred EcCCCCcHHHHHHH-----cCCCCccEEEE--ECCEECC-----CceEcCCCCEEEE
Confidence 45677788877433 36666555443 7888887 4445678887654
No 104
>smart00455 RBD Raf-like Ras-binding domain.
Probab=64.11 E-value=11 Score=23.13 Aligned_cols=39 Identities=33% Similarity=0.324 Sum_probs=30.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK 40 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~ 40 (107)
|.+.|+.|+.|+-+.+-+ +-|+.++.-.+.+.-..++|+
T Consensus 14 V~vrpg~tl~e~L~~~~~-kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 14 VKVRPGKTVRDALAKALK-KRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred EEECCCCCHHHHHHHHHH-HcCCCHHHEEEEEcCCCccee
Confidence 357799999999999999 689999988877433445654
No 105
>KOG2013|consensus
Probab=62.91 E-value=11 Score=32.00 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEE--eccCCeec--CCcchhhhcCCCCCceEEEeccCCcchhh
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVR--LEIKGKIL--KDSDDVKSLGLKNGDMVFIKDLGPQIGWS 68 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~--l~~~Gk~L--~D~ktL~~~gi~~g~tL~vKDlGpQi~wr 68 (107)
...|+.+|-.+|-+.+.++.|+-+-|- |.+.- .- ..+++|++.||.+|+-+.++|.+-...-+
T Consensus 452 ~~~~~~~L~D~ivk~r~~~~pdvsll~~~Li~~~-d~e~n~~k~lsel~i~ngsli~~~~e~~d~~~~ 518 (603)
T KOG2013|consen 452 RKSTLRDLVDKIVKTRLGYLPDVSLLDDDLIDDM-DFEDNLDKTLSELGILNGSLINVKDEILDPVLE 518 (603)
T ss_pred ccchHHHHHHHHHHHHhccCcccchhhhhhcccc-cchhhhhhhHHhhCCCCCceEeeecccCCccee
Confidence 456889998888886677766543221 11211 12 23689999999999999999987665544
No 106
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=62.10 E-value=11 Score=23.79 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhHhCCC
Q psy12731 5 GSFTVKDIKKEVHKAKSQL 23 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i 23 (107)
...+|.|||.+|.++ .++
T Consensus 19 ~~Isv~dLKr~I~~~-~~l 36 (74)
T PF08783_consen 19 TSISVFDLKREIIEK-KKL 36 (74)
T ss_dssp SEEEHHHHHHHHHHH-HT-
T ss_pred CeeEHHHHHHHHHHH-hCC
Confidence 457999999999873 444
No 107
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=61.62 E-value=10 Score=25.86 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=27.9
Q ss_pred chhhhcCCCCCceEEEeccC---Ccchhhhhhhhhhhh
Q psy12731 43 DDVKSLGLKNGDMVFIKDLG---PQIGWSTVFMAEYAG 77 (107)
Q Consensus 43 ktL~~~gi~~g~tL~vKDlG---pQi~wrtVf~~EY~G 77 (107)
+.+++.||..+++|++=|=+ ---+.|..|+++|+|
T Consensus 85 ~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G 122 (138)
T cd01445 85 AMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCG 122 (138)
T ss_pred HHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcC
Confidence 35788899999988888843 456778899999988
No 108
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=61.55 E-value=9.9 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=19.7
Q ss_pred cCCeecCCcchhhhcC-CCCCceEEEe
Q psy12731 34 IKGKILKDSDDVKSLG-LKNGDMVFIK 59 (107)
Q Consensus 34 ~~Gk~L~D~ktL~~~g-i~~g~tL~vK 59 (107)
+.||.|..+++|++|- -.+.+.|.||
T Consensus 6 ~aGK~l~~~k~l~dy~GkNEKtKiivK 32 (98)
T PF11069_consen 6 WAGKELQRGKKLSDYIGKNEKTKIIVK 32 (98)
T ss_pred eccccccCCCcHHHhcCCCcceeEEEE
Confidence 7899999999999983 3334566655
No 109
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.82 E-value=31 Score=20.28 Aligned_cols=49 Identities=33% Similarity=0.454 Sum_probs=30.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||.+|.+.+ ++++++..+. .+|+.+..+ .-++.-+++|++|-+
T Consensus 10 ~~~~~~tv~~ll~~l-----~~~~~~i~V~--vNg~~v~~~-~~~~~~L~~gD~V~i 58 (65)
T cd00565 10 EVEEGATLAELLEEL-----GLDPRGVAVA--LNGEIVPRS-EWASTPLQDGDRIEI 58 (65)
T ss_pred EcCCCCCHHHHHHHc-----CCCCCcEEEE--ECCEEcCHH-HcCceecCCCCEEEE
Confidence 567788998887654 3455555443 678777533 223345788887754
No 110
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=58.87 E-value=24 Score=29.52 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=44.2
Q ss_pred CcccCCCcHHHHHHHHHhH-hCCCCccceeEEeccC--Cee--cCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKA-KSQLYPDRQAVRLEIK--GKI--LKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~-~~~i~~~rQrL~l~~~--Gk~--L~D~ktL~~~gi~~g~tL~vK 59 (107)
+++.++++.+-|-.++-.. -++.+|++..+.-..+ |.. +..++|+.+.|++.|..||+.
T Consensus 14 ve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ 77 (571)
T COG5100 14 VEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLE 77 (571)
T ss_pred eeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEE
Confidence 4778899998888877652 2567888988875444 332 456889999999999998864
No 111
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.83 E-value=21 Score=22.76 Aligned_cols=30 Identities=7% Similarity=0.119 Sum_probs=26.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
|.+++..+..+|.++|++ +...++++-.|.
T Consensus 11 i~v~~g~~y~~L~~~ls~-kL~l~~~~~~LS 40 (78)
T cd06411 11 LRAPRGADVSSLRALLSQ-ALPQQAQRGQLS 40 (78)
T ss_pred EEccCCCCHHHHHHHHHH-HhcCChhhcEEE
Confidence 467899999999999999 578899988887
No 112
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=58.75 E-value=11 Score=20.27 Aligned_cols=18 Identities=28% Similarity=0.598 Sum_probs=14.3
Q ss_pred hhhhhhhhhhHHHHHHHH
Q psy12731 69 TVFMAEYAGPLFVYLIFY 86 (107)
Q Consensus 69 tVf~~EY~GPl~i~~lf~ 86 (107)
.++++--+||++|..+++
T Consensus 11 ~l~liv~aGP~VI~lLa~ 28 (33)
T PF05969_consen 11 SLALIVLAGPLVIFLLAA 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHhhHHHh
Confidence 457788899999988763
No 113
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=57.93 E-value=10 Score=24.76 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=28.9
Q ss_pred cCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
+-+.++..||..++. +-+++.+.=.+.| ....|+.+++|-+-||+....+
T Consensus 10 DI~epl~~Lk~lLe~-Rl~~~L~~~~f~L--QD~~L~~~k~L~dQcVqgeGlV 59 (88)
T PF11620_consen 10 DIREPLSTLKKLLER-RLGISLSDYEFWL--QDIQLEPHKSLVDQCVQGEGLV 59 (88)
T ss_dssp ESSSBGGGHHHHSHH-HH-S--SS-EEEE--TTEE--TTSBTTTSS----SEE
T ss_pred ecCCcHHHHHHHHHH-hhCCCcCCCeEEe--ccceecCCccHHHhhccccCEE
Confidence 345678889999998 5677665555542 3445999999999999886654
No 114
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=56.20 E-value=25 Score=23.67 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=35.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh----cCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS----LGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~----~gi~~g~tL~vK 59 (107)
|+.+.||.++...|.+ +-++.++ +.|.+-.++.....+.++++ ++- ++..||+.
T Consensus 47 Vp~~~tv~~f~~~irk-~l~l~~~-~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~ 104 (112)
T cd01611 47 VPSDLTVGQFVYIIRK-RIQLRPE-KALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMT 104 (112)
T ss_pred ecCCCCHHHHHHHHHH-HhCCCcc-ceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEE
Confidence 6899999999999998 5667665 45654345544456666654 343 24566653
No 115
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=55.08 E-value=32 Score=20.79 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=21.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
.++++.|-.+|+.+|++ +.+.+.+..+|.
T Consensus 16 ~~~~~~s~~dL~~~i~~-~~~~~~~~~~l~ 44 (81)
T smart00666 16 SVPRDISFEDLRSKVAK-RFGLDNQSFTLK 44 (81)
T ss_pred EECCCCCHHHHHHHHHH-HhCCCCCCeEEE
Confidence 46789999999999999 456655455555
No 116
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=54.73 E-value=40 Score=20.73 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHHhHhCC
Q psy12731 6 SFTVKDIKKEVHKAKSQ 22 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~ 22 (107)
.+||.+|++.+.++.++
T Consensus 25 ~~tv~~l~~~L~~~~~~ 41 (81)
T PRK11130 25 FPTVEALRQHLAQKGDR 41 (81)
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 57999999999985444
No 117
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=54.54 E-value=5.6 Score=25.04 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=11.8
Q ss_pred hhcCCCCCceEE-Eecc
Q psy12731 46 KSLGLKNGDMVF-IKDL 61 (107)
Q Consensus 46 ~~~gi~~g~tL~-vKDl 61 (107)
++.-+++|+|+| |||-
T Consensus 8 ksi~LkDGstvyiFKDG 24 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDG 24 (73)
T ss_dssp EEEEBTTSEEEEEETTS
T ss_pred eeEecCCCCEEEEEcCC
Confidence 345689999997 6763
No 118
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=54.05 E-value=29 Score=22.19 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=20.5
Q ss_pred hCCCCccceeEE-eccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 20 KSQLYPDRQAVR-LEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 20 ~~~i~~~rQrL~-l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+..++|+.--|. ...++..|+=+++|.++|| -+||..|-
T Consensus 6 KCEfdp~htvLLrD~~s~e~LdLsKSLndlGi---rELYA~D~ 45 (79)
T PF09469_consen 6 KCEFDPEHTVLLRDYQSGEELDLSKSLNDLGI---RELYAWDT 45 (79)
T ss_dssp HTT--TTSEEEES-SS---B--TTS-HHHHT----SEEEEEE-
T ss_pred ccccCcceEEEeecCCCCCcccccccHHHhhH---HHHHhhcc
Confidence 355677665543 3456788998999999999 57888875
No 119
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=54.04 E-value=36 Score=21.96 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=32.2
Q ss_pred cCCCcHHHHHHHHHhHhCCCCccceeEEeccCC------eecCCcch---h--hhcCCCCCceEEE
Q psy12731 4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG------KILKDSDD---V--KSLGLKNGDMVFI 58 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G------k~L~D~kt---L--~~~gi~~g~tL~v 58 (107)
++.+||.++-+.+.+. .+..+.++... +| ..|-|+.. + .++-+++|++|.+
T Consensus 26 ~~~~tV~dll~~L~~~---~~~~~~~lf~~-~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 26 EKPVTVGDLLDYVASN---LLEERPDLFIE-GGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVF 87 (94)
T ss_pred CCCCcHHHHHHHHHHh---CchhhhhhEec-CCcccCCEEEEECCccccccCCcccCCCCcCEEEE
Confidence 3578999999999884 34556655422 22 23444443 3 3467899998865
No 120
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=53.69 E-value=31 Score=21.82 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=27.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCc-cceeEE-eccCC--eecCCcchhhh
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYP-DRQAVR-LEIKG--KILKDSDDVKS 47 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~-~rQrL~-l~~~G--k~L~D~ktL~~ 47 (107)
.++++.+..+|+++|.+ +.++.. ..-.|. ++..| ..|..+.-|++
T Consensus 15 ~l~~~~~~~~L~~~i~~-r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 15 RLPPSWGFTELKQEIAK-RFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EcCCCCCHHHHHHHHHH-HhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 46889999999999999 456543 222333 22334 33444444544
No 121
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=53.51 E-value=35 Score=20.75 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=28.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCC--ccceeE--EeccCC--eecCCcc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLY--PDRQAV--RLEIKG--KILKDSD 43 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~--~~rQrL--~l~~~G--k~L~D~k 43 (107)
|.|++++|+.++-+.+.+ +.++. ++.=.| .....| +.|.+++
T Consensus 21 i~v~~~tTa~evi~~~l~-k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 21 IKVSSSTTAREVIEMALE-KFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEETTSBHHHHHHHHHH-HTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 357899999999999999 57773 344455 333333 6776544
No 122
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=50.71 E-value=14 Score=23.54 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=16.4
Q ss_pred CcccCCCcHHHHHHHHHhH
Q psy12731 1 MEVSGSFTVKDIKKEVHKA 19 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~ 19 (107)
++++.++|+.++|+.+-++
T Consensus 4 l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 4 LRVLREATLSTIKHELFKQ 22 (78)
T ss_pred EEccccccHHHHHHHHHHH
Confidence 4688999999999988774
No 123
>KOG0012|consensus
Probab=50.39 E-value=20 Score=29.16 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC--cchhhhcCCCCCceEEEecc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD--SDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D--~ktL~~~gi~~g~tL~vKDl 61 (107)
+|..+....+++..+.. ..+++.+..-|+ +++..+.+ ..++.++|+++++++-++--
T Consensus 18 ~v~~dg~L~nl~aL~~~-d~g~~~~~~~li--~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 18 PVTTDGELNNLAALCWK-DTGIVYDPSDLI--YNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ccccccchhhHHHHHHH-HhCcccchhhcc--cCCCccccchhhhhhhcccccceeEeccCC
Confidence 45566777889999998 689999887777 89888864 45799999999999877654
No 124
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=50.20 E-value=67 Score=20.65 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccCC
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGp 63 (107)
.+.+||+.+-.+ ..+++. .-+|.|..+|..++|++=+. .+.+.+.+.+--.|-
T Consensus 21 ~sL~EL~~K~~~-~L~~~~-~~~lvLeeDGT~Vd~EeyF~--tLpdnT~lm~L~~gq 73 (81)
T cd06537 21 ASLQELLAKALE-TLLLSG-VLTLVLEEDGTAVDSEDFFE--LLEDDTCLMVLEQGQ 73 (81)
T ss_pred cCHHHHHHHHHH-HhCCCC-ceEEEEecCCCEEccHHHHh--hCCCCCEEEEECCCC
Confidence 578888888888 466753 47788889999998887554 245667776655553
No 125
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=49.63 E-value=33 Score=20.50 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
+++.++|..+||+++.. ..+ -++ ++|=+.+++.. +++|++|++..
T Consensus 11 ~~~~~~tl~~lr~~~k~-----~~D--I~I--~NGF~~~~d~~-----L~e~D~v~~Ik 55 (57)
T PF14453_consen 11 ETEENTTLFELRKESKP-----DAD--IVI--LNGFPTKEDIE-----LKEGDEVFLIK 55 (57)
T ss_pred EcCCCcCHHHHHHhhCC-----CCC--EEE--EcCcccCCccc-----cCCCCEEEEEe
Confidence 56788899999887655 122 233 78877766554 56788887643
No 126
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=48.39 E-value=14 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.2
Q ss_pred CcccCCCcHHHHHHHHHhH
Q psy12731 1 MEVSGSFTVKDIKKEVHKA 19 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~ 19 (107)
++++.++|+.++|+.+=++
T Consensus 4 l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEETT-BHHHHHHHHHHH
T ss_pred EEccCcCcHHHHHHHHHHH
Confidence 4688999999999988764
No 127
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=47.42 E-value=38 Score=20.69 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=28.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSD 43 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~k 43 (107)
|.+-|+.||.|.-+.+-+ +-++.++.-.+.+....+.|.-+.
T Consensus 15 V~vrpg~ti~d~L~~~~~-kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 15 VQVRPGMTIRDALSKACK-KRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEE-TTSBHHHHHHHHHH-TTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEcCCCCHHHHHHHHHH-HcCCCHHHEEEEEcCCCccccCCC
Confidence 356799999999999999 678998887766434556665333
No 128
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=47.28 E-value=62 Score=19.44 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=26.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++++++||.+|-+.+ ++++.. .....+|..... +.-+++|++|-
T Consensus 19 ~~~~~~tv~~ll~~l-----~~~~~~--v~v~vNg~iv~~-----~~~l~~gD~Ve 62 (70)
T PRK08364 19 EWRKGMKVADILRAV-----GFNTES--AIAKVNGKVALE-----DDPVKDGDYVE 62 (70)
T ss_pred EcCCCCcHHHHHHHc-----CCCCcc--EEEEECCEECCC-----CcCcCCCCEEE
Confidence 456778988886554 344433 333367776643 34467777764
No 129
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=46.55 E-value=17 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=12.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDR 27 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~r 27 (107)
+|-|..|+.|--.+..+ .-++.++.
T Consensus 15 ~vrpG~tl~daL~KaLk-~R~l~pe~ 39 (74)
T cd01816 15 NVRPGMTLRDALAKALK-VRGLQPEC 39 (74)
T ss_pred EecCCcCHHHHHHHHHH-HcCCChhH
Confidence 34455555555555444 34454443
No 130
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=46.33 E-value=60 Score=18.99 Aligned_cols=49 Identities=33% Similarity=0.468 Sum_probs=28.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++++||.+|.+.+ +++++.-.+ ..+|+.+..+ .-+++-+++|++|-+
T Consensus 9 ~~~~~~tv~~ll~~l-----~~~~~~v~v--~vN~~iv~~~-~~~~~~L~~gD~vei 57 (64)
T TIGR01683 9 EVEDGLTLAALLESL-----GLDPRRVAV--AVNGEIVPRS-EWDDTILKEGDRIEI 57 (64)
T ss_pred EcCCCCcHHHHHHHc-----CCCCCeEEE--EECCEEcCHH-HcCceecCCCCEEEE
Confidence 466778888887654 344444333 3677776422 123345778887643
No 131
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=45.30 E-value=12 Score=22.93 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=13.8
Q ss_pred cchhhhcCCCCCceEEEecc
Q psy12731 42 SDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 42 ~ktL~~~gi~~g~tL~vKDl 61 (107)
++.|...|+++|++|.+-|.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHcCCCCCCEEEEcCE
Confidence 46789999999999987664
No 132
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=44.35 E-value=16 Score=22.33 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=16.9
Q ss_pred cchhhhcCCCCCceEEEecc
Q psy12731 42 SDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 42 ~ktL~~~gi~~g~tL~vKDl 61 (107)
++.|.+.|+++|++|.+-|.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHcCCCCCCEEEEccE
Confidence 56799999999999987653
No 133
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=42.88 E-value=41 Score=20.28 Aligned_cols=43 Identities=9% Similarity=0.319 Sum_probs=28.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEE-eccCC--eecCCcchh
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKG--KILKDSDDV 45 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~G--k~L~D~ktL 45 (107)
.++++.|..+|+++|+++ .+.....-+|. .+..| ..|.++..|
T Consensus 17 ~~~~~~s~~~L~~~i~~~-~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl 62 (84)
T PF00564_consen 17 SLPSDVSFDDLRSKIREK-FGLLDEDFQLKYKDEDGDLVTISSDEDL 62 (84)
T ss_dssp EECSTSHHHHHHHHHHHH-HTTSTSSEEEEEEETTSSEEEESSHHHH
T ss_pred EcCCCCCHHHHHHHHHHH-hCCCCccEEEEeeCCCCCEEEeCCHHHH
Confidence 467888999999999994 55654555555 23345 445555433
No 134
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=41.83 E-value=63 Score=21.45 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=32.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccc-eeEEeccCC--eecC-Ccch-------hhhcCCCCCc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKG--KILK-DSDD-------VKSLGLKNGD 54 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~r-QrL~l~~~G--k~L~-D~kt-------L~~~gi~~g~ 54 (107)
.++.++||.|+-..+.+ +..++.+. =+|.+..+| ++|. .++. |+..|-++.+
T Consensus 18 s~~l~tTv~eli~~L~r-K~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D 80 (97)
T cd01775 18 SCPLNTTVSELIPQLAK-KFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERD 80 (97)
T ss_pred EcCCcCcHHHHHHHHHH-hhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCC
Confidence 46789999999999999 56666533 345443443 5564 3432 4555554444
No 135
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=41.72 E-value=57 Score=21.01 Aligned_cols=24 Identities=4% Similarity=0.012 Sum_probs=20.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD 26 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~ 26 (107)
.+.|+..+.+|++.|++ +.|+...
T Consensus 16 ~~~~s~~~~~L~~~I~~-Rl~~d~~ 39 (86)
T cd06409 16 RLRPSESLEELRTLISQ-RLGDDDF 39 (86)
T ss_pred EecCCCCHHHHHHHHHH-HhCCccc
Confidence 35688999999999999 5788764
No 136
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=40.72 E-value=96 Score=19.78 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
..+.++|+.+..+ +.+++. .-+|.|..+|..++|++=+.. +.+.+.+.+--.|
T Consensus 20 A~sL~eL~~K~~~-~l~l~~-~~~lvL~eDGT~Vd~EeyF~t--Lp~nt~l~vL~~g 72 (79)
T cd06538 20 ADSLEDLLNKVLD-ALLLDC-ISSLVLDEDGTGVDTEEFFQA--LADNTVFMVLGKG 72 (79)
T ss_pred cCCHHHHHHHHHH-HcCCCC-ccEEEEecCCcEEccHHHHhh--CCCCcEEEEECCC
Confidence 3578999999999 567743 467778899999988875543 3455555554333
No 137
>CHL00184 ycf12 Ycf12; Provisional
Probab=37.87 E-value=11 Score=20.29 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.8
Q ss_pred hhhhhhhhhhHHHHHHHH
Q psy12731 69 TVFMAEYAGPLFVYLIFY 86 (107)
Q Consensus 69 tVf~~EY~GPl~i~~lf~ 86 (107)
.++++--+||++|..+++
T Consensus 11 ~l~lIv~aGP~VI~lLa~ 28 (33)
T CHL00184 11 SLALIVLAGPLVIVLLAL 28 (33)
T ss_pred HHHHHHHccCHheeehhh
Confidence 456777899999987753
No 138
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=37.87 E-value=5.1 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=26.7
Q ss_pred hhhcCCCCCceEEEeccC-CcchhhhhhhhhhhhhHHH
Q psy12731 45 VKSLGLKNGDMVFIKDLG-PQIGWSTVFMAEYAGPLFV 81 (107)
Q Consensus 45 L~~~gi~~g~tL~vKDlG-pQi~wrtVf~~EY~GPl~i 81 (107)
|..-+|++-..+++-||| |.==|+ +-+|-|||+++
T Consensus 133 L~a~~Ik~v~~V~~~dLGmpEAv~~--l~VedfGP~iV 168 (204)
T PRK08228 133 LAATQVEEIEDAQWRDLGMPETLWV--CRVKEFGPLIV 168 (204)
T ss_pred HHHhhccEEEEeeeccCCCccEEEE--EEEeeccceEE
Confidence 444556666678899999 788876 67899999764
No 139
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=37.58 E-value=62 Score=19.98 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|+++|.+.-++ +.++++.+. ++.+|-.++|=. -|.+|++||+
T Consensus 26 ~SleeLl~ia~~-kfg~~~~~v---~~~dgaeIdDI~-----~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASE-KFGFSATKV---LNEDGAEIDDID-----VIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHH-HhCCCceEE---EcCCCCEEeEEE-----EEEcCCEEEE
Confidence 589999999888 577764442 334454333322 2577788775
No 140
>KOG0400|consensus
Probab=37.28 E-value=20 Score=25.36 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHh-HhCCCCccceeEE
Q psy12731 6 SFTVKDIKKEVHK-AKSQLYPDRQAVR 31 (107)
Q Consensus 6 ~~TV~~LK~~I~~-~~~~i~~~rQrL~ 31 (107)
..|.+|+|++|-+ .+.|++|+|...+
T Consensus 27 K~~~ddvkeqI~K~akKGltpsqIGvi 53 (151)
T KOG0400|consen 27 KLTADDVKEQIYKLAKKGLTPSQIGVI 53 (151)
T ss_pred hcCHHHHHHHHHHHHHcCCChhHceee
Confidence 3588999999987 2479999997544
No 141
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=36.98 E-value=86 Score=18.64 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=20.0
Q ss_pred cc-CCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 3 VS-GSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 3 v~-~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
++ .+.|..+|+++|.+ +.+.+...-++.
T Consensus 16 ~~~~~~s~~~L~~~i~~-~~~~~~~~~~l~ 44 (81)
T cd05992 16 VVSRSISFEDLRSKIAE-KFGLDAVSFKLK 44 (81)
T ss_pred EecCCCCHHHHHHHHHH-HhCCCCCcEEEE
Confidence 44 78999999999999 455554344444
No 142
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=36.91 E-value=44 Score=21.28 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=26.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL 32 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l 32 (107)
-|.|++|++|+-+..-+ +.++.|++--|++
T Consensus 15 ~vrp~~tv~dvLe~aCk-~~~ldp~eh~Lrl 44 (77)
T cd01818 15 YLRPGMSVEDFLESACK-RKQLDPMEHYLRL 44 (77)
T ss_pred EECCCCCHHHHHHHHHH-hcCCChhHheeEE
Confidence 46799999999999999 6899999987775
No 143
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=36.45 E-value=33 Score=18.85 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDR 27 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~r 27 (107)
+.+++++|.+++|....+....+-|++
T Consensus 6 Lgl~~~~~~~~ik~~y~~l~~~~HPD~ 32 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKLALKYHPDK 32 (55)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 467899999999998887433455655
No 144
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=35.27 E-value=36 Score=26.54 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 16 VHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 16 I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
+++ .+-++|.=||.- .+|+.|++...+ +|++..+|.|+|+=
T Consensus 5 l~~-~E~iDP~y~W~G--P~g~~l~gn~~~---nIT~TG~L~~~~F~ 45 (271)
T PF07354_consen 5 LSN-KELIDPTYLWTG--PNGKPLSGNSYV---NITETGKLMFKNFQ 45 (271)
T ss_pred hhh-cccCCCceEEEC--CCCcccCCCCeE---EEccCceEEeeccc
Confidence 344 467899999877 889999877654 58888889999983
No 145
>PRK13686 hypothetical protein; Provisional
Probab=34.30 E-value=20 Score=20.38 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHHHHHHH
Q psy12731 69 TVFMAEYAGPLFVYLIF 85 (107)
Q Consensus 69 tVf~~EY~GPl~i~~lf 85 (107)
.+.++--+||++|..++
T Consensus 21 ~l~lIv~aGP~VI~lLa 37 (43)
T PRK13686 21 FVALIVIAGPVVIFLLA 37 (43)
T ss_pred HHHHHHHcCCHheehhh
Confidence 45677888999998775
No 146
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.87 E-value=55 Score=17.14 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhHhCCCCc
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~ 25 (107)
.+.||.+||+...+ -|++.
T Consensus 2 ~~l~v~eLk~~l~~--~gL~~ 20 (35)
T PF02037_consen 2 SKLTVAELKEELKE--RGLST 20 (35)
T ss_dssp TTSHHHHHHHHHHH--TTS-S
T ss_pred CcCcHHHHHHHHHH--CCCCC
Confidence 36789999999988 35544
No 147
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=32.76 E-value=1.4e+02 Score=19.28 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=38.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccc-eeEE--eccC--CeecCCcchhhh----cCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDR-QAVR--LEIK--GKILKDSDDVKS----LGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~r-QrL~--l~~~--Gk~L~D~ktL~~----~gi~~g~tL~vKD 60 (107)
|.|++++|+.++-+.+.. +.+...+. ..|. .+.- -+.++|.+.+.+ -+..+.+.++|+.
T Consensus 17 l~V~~~~Ta~dV~~~L~~-K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~f~k 84 (85)
T cd01787 17 LEVDERMTARDVCQLLVD-KNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLFFRK 84 (85)
T ss_pred EEEcCCCcHHHHHHHHHH-HhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEEEec
Confidence 468899999999999998 45554433 3443 2222 467888876544 3555666777763
No 148
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.90 E-value=1.4e+02 Score=19.06 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHhHhCCCCcc--ceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPD--RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~--rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
..+.++|+++..+ +.+++.+ .-+|.|..+|..++|++=+.. +.+++.+.+--.|
T Consensus 20 A~sL~eL~~K~~~-~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~~L~~g 75 (80)
T cd06536 20 ASSLEELRIKACE-SLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFVLLAEN 75 (80)
T ss_pred cCCHHHHHHHHHH-HhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEEEECCC
Confidence 3578899999988 5667633 356778889999988875542 4456666554444
No 149
>PF10181 PIG-H: GPI-GlcNAc transferase complex, PIG-H component; InterPro: IPR019328 This entry represents a conserved domain found in PIG-H proteins. PIG-H is a family of conserved proteins that complexes with three other proteins to form the GPI-GnT (glycosylphosphatidylinositol anchor biosynthesis transferase) complex. It appears to be a peripheral membrane protein that faces the cytoplasm and which is involved in the first step in GPI anchor formation. ; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity
Probab=31.49 E-value=22 Score=21.75 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.8
Q ss_pred eEEEeccCCcchhh
Q psy12731 55 MVFIKDLGPQIGWS 68 (107)
Q Consensus 55 tL~vKDlGpQi~wr 68 (107)
-+.++|+|.|++-+
T Consensus 2 llV~~~~GiQl~t~ 15 (69)
T PF10181_consen 2 LLVIPGLGIQLSTK 15 (69)
T ss_pred EEEECCcEEEEEEE
Confidence 46799999999866
No 150
>PRK07440 hypothetical protein; Provisional
Probab=31.38 E-value=94 Score=18.80 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=28.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++..||.+|-+ + .++++.. +....+|..+.- ...++.-+++|++|-+
T Consensus 15 ~~~~~~tl~~lL~---~--l~~~~~~--vav~~N~~iv~r-~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 15 TCSSGTSLPDLLQ---Q--LGFNPRL--VAVEYNGEILHR-QFWEQTQVQPGDRLEI 63 (70)
T ss_pred EcCCCCCHHHHHH---H--cCCCCCe--EEEEECCEEeCH-HHcCceecCCCCEEEE
Confidence 4567788887754 2 2454444 334467777652 2244455778887643
No 151
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=31.08 E-value=75 Score=16.43 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHhHhCCCCc
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~ 25 (107)
.+.|+.+||+...+ .|++.
T Consensus 2 ~~l~~~~Lk~~l~~--~gl~~ 20 (35)
T smart00513 2 AKLKVSELKDELKK--RGLST 20 (35)
T ss_pred CcCcHHHHHHHHHH--cCCCC
Confidence 36789999999888 36654
No 152
>KOG4572|consensus
Probab=30.70 E-value=56 Score=29.89 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcC-CC-CCceEEEec
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLG-LK-NGDMVFIKD 60 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~g-i~-~g~tL~vKD 60 (107)
...|+.+||..|++ .-|+....|.+ +..+|..+.-++.|..+. .+ +.+-|++-+
T Consensus 14 etqT~adLk~aiqk-e~~~aIq~~tf-l~egGecmaadkrl~e~StaGTdTnPiffFn 69 (1424)
T KOG4572|consen 14 ETQTFADLKDAIQK-EVGHAIQDLTF-LDEGGECMAADKRLAEISTAGTDTNPIFFFN 69 (1424)
T ss_pred eeehHHHHHHHHHH-Hhchhhceeee-eecCCcCcccccchhhhccccCCCCceEEee
Confidence 45699999999999 56777766665 457899999888888876 32 234566543
No 153
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=30.57 E-value=28 Score=24.92 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHh-HhCCCCccceeEEeccCCeecCCcchhhhcCCCCCce----EEEeccCCcchhhhhhhhhhh
Q psy12731 6 SFTVKDIKKEVHK-AKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDM----VFIKDLGPQIGWSTVFMAEYA 76 (107)
Q Consensus 6 ~~TV~~LK~~I~~-~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~t----L~vKDlGpQi~wrtVf~~EY~ 76 (107)
+.|.+|+.+.|-+ .+.|.+|++..+ .|.|+--+-+...-.|.. |--+++.|.|....-+|+|=+
T Consensus 27 ~~~~eeve~~I~~lakkG~~pSqIG~-------~LRD~~gip~Vk~vtG~ki~~iLk~~gl~p~iPEDL~~L~~ri 95 (151)
T PRK08561 27 DYSPEEIEELVVELAKQGYSPSMIGI-------ILRDQYGIPDVKLITGKKITEILEENGLAPEIPEDLRNLIKKA 95 (151)
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhh-------hHhhccCCCceeeeccchHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 3677888888776 247899999654 344432222211111221 123467788888888887754
No 154
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=30.56 E-value=43 Score=25.25 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=35.6
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEec--cCC--eecCCcchhhhcCCCCCceEEEec
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKG--KILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~--~~G--k~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
|+.+++|.++-..|.+ .-|++++..-+... .-+ ..++.+.|+....+.+|+-|.|-.
T Consensus 91 v~~~~~v~~l~~~i~~-~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~ 151 (249)
T PF12436_consen 91 VPKNDKVSELVPLINE-RAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQR 151 (249)
T ss_dssp EETT-BGGGTHHHHHH-HHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE
T ss_pred ECCCCCHHHHHHHHHH-HcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEe
Confidence 5778999999999999 57998876533311 123 346778899999999999887655
No 155
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=30.53 E-value=1.4e+02 Score=18.75 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=29.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||+++ |+. .|+|.....+++ .+|+.-.= ++-+++|+.|.|
T Consensus 28 ~~~~~~tvkd~---IEs--LGVP~tEV~~i~-vNG~~v~~-----~~~~~~Gd~v~V 73 (81)
T PF14451_consen 28 PFDGGATVKDV---IES--LGVPHTEVGLIL-VNGRPVDF-----DYRLKDGDRVAV 73 (81)
T ss_pred ecCCCCcHHHH---HHH--cCCChHHeEEEE-ECCEECCC-----cccCCCCCEEEE
Confidence 45677777665 555 588888887654 56655432 255677777654
No 156
>KOG4250|consensus
Probab=30.44 E-value=1e+02 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=25.6
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
++++.|+.++++.|++ ..|+|...|-|.
T Consensus 331 ~~~~ntl~~~~~~I~~-~Tgipe~~qeLL 358 (732)
T KOG4250|consen 331 VHADNTLHSLIERISK-QTGIPEGKQELL 358 (732)
T ss_pred cChhhhHHHHHHHHHH-hhCCCCccceee
Confidence 5789999999999999 699999999887
No 157
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=30.10 E-value=48 Score=18.56 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=19.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDR 27 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~r 27 (107)
+.+++++|..+||+...+....+-|++
T Consensus 7 Lgl~~~~~~~~ik~ay~~l~~~~HPD~ 33 (60)
T smart00271 7 LGVPRDASLDEIKKAYRKLALKYHPDK 33 (60)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 467889999999998887433445555
No 158
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=29.86 E-value=67 Score=20.76 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=21.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL 32 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l 32 (107)
.|+++.+-.+|.++|.+ +.++. |.+++
T Consensus 17 ~v~~~i~f~dL~~kIrd-kf~~~---~~~~i 43 (86)
T cd06408 17 MIGPDTGFADFEDKIRD-KFGFK---RRLKI 43 (86)
T ss_pred EcCCCCCHHHHHHHHHH-HhCCC---CceEE
Confidence 47899999999999999 56763 55553
No 159
>PF10598 RRM_4: RNA recognition motif of the spliceosomal PrP8; InterPro: IPR019582 The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is the pre-mRNA-processing-splicing factor 8 (PrP8) which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa []. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RNA- recognition-motif (RRM) are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [].
Probab=29.75 E-value=75 Score=20.93 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=36.7
Q ss_pred cchhhhcCC-CCCceEEEecc----------CCcchhhhhhhhhhhhhHHHHHHHHh-hccccccCC
Q psy12731 42 SDDVKSLGL-KNGDMVFIKDL----------GPQIGWSTVFMAEYAGPLFVYLIFYY-RPWIFYGSE 96 (107)
Q Consensus 42 ~ktL~~~gi-~~g~tL~vKDl----------GpQi~wrtVf~~EY~GPl~i~~lf~~-~~~~iy~~~ 96 (107)
|..+++|-. ++...+.+||. |-|.| -|+++|.|=++=-.++-. +-..+.|.+
T Consensus 17 D~niadYitaKnNv~i~yKDM~h~N~yGlirGlqFs---sFi~QyyglvlDLliLG~~ra~eiagp~ 80 (93)
T PF10598_consen 17 DHNIADYITAKNNVVINYKDMNHTNSYGLIRGLQFS---SFIFQYYGLVLDLLILGLQRASEIAGPP 80 (93)
T ss_pred CchHHHHHHhhhcceEEEeccHHHhHhcccchhhHH---HHHHHHHHHHHHHHHHccchHHHHcCCC
Confidence 456777764 55778899998 77875 699999997655444443 556677754
No 160
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=29.66 E-value=80 Score=20.83 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=20.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEe--ccCCee
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL--EIKGKI 38 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l--~~~Gk~ 38 (107)
++.++.+.+++++++.+....++.+.+-|.+ .++|.+
T Consensus 34 ~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 34 PFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred EcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 3456667777777776644445444444432 245544
No 161
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=29.57 E-value=8.6 Score=27.91 Aligned_cols=31 Identities=39% Similarity=0.619 Sum_probs=23.5
Q ss_pred CCCCCceEEEeccC-CcchhhhhhhhhhhhhHHH
Q psy12731 49 GLKNGDMVFIKDLG-PQIGWSTVFMAEYAGPLFV 81 (107)
Q Consensus 49 gi~~g~tL~vKDlG-pQi~wrtVf~~EY~GPl~i 81 (107)
.|++-..+++.||| |.==|+ +-+|=|||+++
T Consensus 125 ~Ik~~~~v~~~dLGmpEAi~~--leVedfGPliV 156 (168)
T TIGR00723 125 SVKKVEGVAWEDLGMPEAIWE--LEVEDFGPLIV 156 (168)
T ss_pred cccEEEEEeecCCCCccEEEE--EEEecceeEEE
Confidence 35555678899999 888776 67888898754
No 162
>KOG4147|consensus
Probab=28.04 E-value=26 Score=24.00 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=15.6
Q ss_pred ecC-CcchhhhcCCCCCceEE
Q psy12731 38 ILK-DSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 38 ~L~-D~ktL~~~gi~~g~tL~ 57 (107)
.|+ +++||..|||.++.+|-
T Consensus 89 ~L~d~~ktL~~~GIenETEis 109 (127)
T KOG4147|consen 89 LLKDEDKTLKAAGIENETEIS 109 (127)
T ss_pred eecCccchHHHhccCcchhhh
Confidence 345 46799999999998773
No 163
>KOG0007|consensus
Probab=27.54 E-value=19 Score=28.45 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchh
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDV 45 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL 45 (107)
-+..+..+|++|+. ..+++++-|.++ +.|..|+|+.++
T Consensus 302 ~~~~~~~~k~k~~~-~~~i~~~~q~~~--~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 302 LSENVASLKEKIAD-ESQIPANKQKLR--GEGAFLKDNRSL 339 (341)
T ss_pred cccccccccccccc-ccccchhheeec--cCCcccCccccc
Confidence 34668889999999 688999999988 889999887443
No 164
>PRK06043 fumarate hydratase; Provisional
Probab=27.49 E-value=9.7 Score=28.22 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=26.3
Q ss_pred hhhcCCCCCceEEEeccC-CcchhhhhhhhhhhhhHHH
Q psy12731 45 VKSLGLKNGDMVFIKDLG-PQIGWSTVFMAEYAGPLFV 81 (107)
Q Consensus 45 L~~~gi~~g~tL~vKDlG-pQi~wrtVf~~EY~GPl~i 81 (107)
|..-+|++-..+++.||| |.==|+ +-+|=|||+++
T Consensus 131 Ll~~~Ik~~~~v~~~dLGmpEAi~~--leV~dfGP~iV 166 (192)
T PRK06043 131 LAAESIKRVKAVHWLDLGMPEAVWV--LEVEEFGPLIV 166 (192)
T ss_pred HHHhcccEEEEEeeccCCCccEEEE--EEEeeccceEE
Confidence 444566666678899999 788876 56788999764
No 165
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=27.39 E-value=1.5e+02 Score=19.28 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=29.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC--eecCCcc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--KILKDSD 43 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G--k~L~D~k 43 (107)
-|.|++|+++|=+.++++..=-.|+.=+|.+-.+| ..|.|+.
T Consensus 19 ~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 19 LVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred ecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 47899999999999999433235666677643344 4576554
No 166
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=27.35 E-value=1.4e+02 Score=17.42 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
..|+.+|.+.+ +++++ ++....++..+. ....++.-+++|++|-+
T Consensus 14 ~~tl~~Ll~~l-----~~~~~--~vavavN~~iv~-~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 14 ATTLALLLAEL-----DYEGN--WLATAVNGELVH-KEARAQFVLHEGDRIEI 58 (65)
T ss_pred cCcHHHHHHHc-----CCCCC--eEEEEECCEEcC-HHHcCccccCCCCEEEE
Confidence 45788776553 34443 343336676665 22344556788887743
No 167
>KOG2561|consensus
Probab=26.93 E-value=24 Score=29.79 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCce
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDM 55 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~t 55 (107)
-+.|-.++...|++ +.+++-+..+.+ .+||+|.-.+||.+-|++...+
T Consensus 58 L~i~Gselqa~iak-klgi~enhvKci--~~~Kils~~ktlaeQglk~nq~ 105 (568)
T KOG2561|consen 58 LHITGSELQALIAK-KLGIKENHVKCI--INGKILSCRKTLAEQGLKINQE 105 (568)
T ss_pred cccccHHHHHHHHH-HcCCchhhhhee--eccceeecccchhhhhhhhhhH
Confidence 34566789999999 689988877766 7899999999998888765443
No 168
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.08 E-value=1.4e+02 Score=17.57 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=27.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++.||.+|.+.+. ..... +....++..+.. ..-++.-+++|++|-+
T Consensus 11 ~~~~~~tl~~ll~~l~-----~~~~~--vaVavN~~iv~r-~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 11 QCAAGQTVHELLEQLN-----QLQPG--AALAINQQIIPR-EQWAQHIVQDGDQILL 59 (66)
T ss_pred EcCCCCCHHHHHHHcC-----CCCCc--EEEEECCEEeCh-HHcCccccCCCCEEEE
Confidence 4567789888876533 22223 333367777642 1233344778887643
No 169
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=25.63 E-value=1.9e+02 Score=18.43 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=34.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-ecCCcchhhhc-C-CCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-ILKDSDDVKSL-G-LKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-~L~D~ktL~~~-g-i~~g~tL~vK 59 (107)
-|+++.|+.++..-|.+ +-++.++ +.|.+=.+.. ....+.++++. . -.++..||+.
T Consensus 21 lv~~~~tv~~~~~~lrk-~L~l~~~-~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~ 79 (87)
T cd01612 21 KISATQSFQAVIDFLRK-RLKLKAS-DSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVS 79 (87)
T ss_pred EeCCCCCHHHHHHHHHH-HhCCCcc-CeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEE
Confidence 37899999999999998 5677655 4554322332 22344555441 1 1456777763
No 170
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=25.60 E-value=1.1e+02 Score=18.81 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=27.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcc--ceeEEecc-CC--eecCCc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPD--RQAVRLEI-KG--KILKDS 42 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~--rQrL~l~~-~G--k~L~D~ 42 (107)
|.|++++|+.++-+.+.+ +.++..+ .=.|.-.. +| +.|.++
T Consensus 20 i~v~~~tTa~~Vi~~~l~-k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 20 LRVSSRTTARDVIQQLLE-KFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 357899999999999998 5777653 33444222 33 566543
No 171
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=25.34 E-value=62 Score=26.01 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=16.0
Q ss_pred cchhhhhhhhhhhhhHHHHHHH
Q psy12731 64 QIGWSTVFMAEYAGPLFVYLIF 85 (107)
Q Consensus 64 Qi~wrtVf~~EY~GPl~i~~lf 85 (107)
+-+||.+|++.-+.+++...+.
T Consensus 200 ~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 200 DYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 4589999999988666554443
No 172
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=25.13 E-value=1.1e+02 Score=15.84 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=19.7
Q ss_pred cCCeecCCcchhhhcCCCCCceEEEe-ccCCc
Q psy12731 34 IKGKILKDSDDVKSLGLKNGDMVFIK-DLGPQ 64 (107)
Q Consensus 34 ~~Gk~L~D~ktL~~~gi~~g~tL~vK-DlGpQ 64 (107)
.+|+..--.+-.+..+++.|+.+.+. +-+.+
T Consensus 5 ~kgri~iP~~~r~~l~~~~gd~~~i~~~~~~~ 36 (43)
T TIGR01439 5 KKGQIVIPKEIREKLGLKEGDRLEVIRVEDGE 36 (43)
T ss_pred cCCeEEecHHHHHHcCcCCCCEEEEEEeCCCE
Confidence 44544444455677888888888777 43433
No 173
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=25.08 E-value=62 Score=22.30 Aligned_cols=16 Identities=31% Similarity=0.845 Sum_probs=12.6
Q ss_pred hhhhhhhhHHHHHHHH
Q psy12731 71 FMAEYAGPLFVYLIFY 86 (107)
Q Consensus 71 f~~EY~GPl~i~~lf~ 86 (107)
|.-|--||+.||.+++
T Consensus 120 ~~seiw~pi~iyv~l~ 135 (143)
T PF06198_consen 120 FYSEIWGPIAIYVCLF 135 (143)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5567779999997665
No 174
>KOG1395|consensus
Probab=25.04 E-value=50 Score=27.32 Aligned_cols=18 Identities=44% Similarity=1.139 Sum_probs=15.3
Q ss_pred EEeccCCcchhhhhhhhh
Q psy12731 57 FIKDLGPQIGWSTVFMAE 74 (107)
Q Consensus 57 ~vKDlGpQi~wrtVf~~E 74 (107)
|++.|||.|||..=|+=|
T Consensus 457 yL~~lgpkigwdlrf~~e 474 (477)
T KOG1395|consen 457 YLPGLGPKIGWDLRFIRE 474 (477)
T ss_pred hccccccccccchhhhcc
Confidence 578999999999888755
No 175
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=23.47 E-value=1.7e+02 Score=18.55 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=28.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++.||.+|-+. .++++.+ +....+|..+. ....++.-+++|+.|-+
T Consensus 29 ~~~~~~tl~~LL~~-----l~~~~~~--vAVevNg~iVp-r~~w~~t~L~egD~IEI 77 (84)
T PRK06083 29 QVDISSSLAQIIAQ-----LSLPELG--CVFAINNQVVP-RSEWQSTVLSSGDAISL 77 (84)
T ss_pred EcCCCCcHHHHHHH-----cCCCCce--EEEEECCEEeC-HHHcCcccCCCCCEEEE
Confidence 45667787776443 2454444 33346787774 33355566888887743
No 176
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=22.66 E-value=66 Score=22.36 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=18.3
Q ss_pred CcchhhhcCCCCCceEEEec-cC
Q psy12731 41 DSDDVKSLGLKNGDMVFIKD-LG 62 (107)
Q Consensus 41 D~ktL~~~gi~~g~tL~vKD-lG 62 (107)
|.+.++.+|+++|+++.||. .|
T Consensus 36 np~D~~~Lgv~EGD~VkVkse~G 58 (128)
T COG1153 36 NPEDMKQLGVSEGDKVKVKSEFG 58 (128)
T ss_pred CHHHHHHhCCCcCCeEEEEecCc
Confidence 45668889999999999988 55
No 177
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.09 E-value=63 Score=21.75 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=13.1
Q ss_pred hhhhhhhhhhhHHHHHHHHh
Q psy12731 68 STVFMAEYAGPLFVYLIFYY 87 (107)
Q Consensus 68 rtVf~~EY~GPl~i~~lf~~ 87 (107)
|+|+++=-+..++|+.++.+
T Consensus 1 RW~l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFY 20 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHH
Confidence 56777777777666655543
No 178
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=21.87 E-value=84 Score=17.88 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=21.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccce
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQ 28 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQ 28 (107)
+.|+++++-++||....+....+-|++.
T Consensus 6 Lgl~~~~~~~eik~~y~~l~~~~HPD~~ 33 (64)
T PF00226_consen 6 LGLPPDASDEEIKKAYRRLSKQYHPDKN 33 (64)
T ss_dssp CTSTTTSSHHHHHHHHHHHHHHTSTTTG
T ss_pred CCCCCCCCHHHHHHHHHhhhhccccccc
Confidence 4678999999999988874444666663
No 179
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=21.54 E-value=1.8e+02 Score=16.70 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=26.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+|+.++.+.+.- .+ + +....+|.....+. -.+.-+++|++|-+
T Consensus 11 ~~~~~~tl~~ll~~l~~-----~~-~--~~v~vN~~~v~~~~-~~~~~L~~gD~vei 58 (65)
T PRK06944 11 SLPDGATVADALAAYGA-----RP-P--FAVAVNGDFVARTQ-HAARALAAGDRLDL 58 (65)
T ss_pred ECCCCCcHHHHHHhhCC-----CC-C--eEEEECCEEcCchh-cccccCCCCCEEEE
Confidence 56677899888776433 21 1 23335676654221 22333777887743
No 180
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=21.24 E-value=2.4e+02 Score=18.10 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHhHhCCCCc-cceeEE-eccCCe--ecCCcchhhh
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP-DRQAVR-LEIKGK--ILKDSDDVKS 47 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~-~rQrL~-l~~~Gk--~L~D~ktL~~ 47 (107)
++.+..+|+++|.+ ..++++ ..-.|. .+..|. .|.++.-|.+
T Consensus 23 ~d~~~~~L~~kI~~-~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~ 68 (91)
T cd06398 23 LDLNMDGLREKVEE-LFSLSPDADLSLTYTDEDGDVVTLVDDNDLTD 68 (91)
T ss_pred CCCCHHHHHHHHHH-HhCCCCCCcEEEEEECCCCCEEEEccHHHHHH
Confidence 57899999999999 567776 333444 233563 4555554443
No 181
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=91 Score=20.81 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=17.9
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
+++|..+||+.|++ ++|++-++.
T Consensus 74 Enm~L~eLk~vI~e----IYP~~d~fy 96 (106)
T COG3097 74 ENMTLPELKKVIAE----IYPNQDQFY 96 (106)
T ss_pred hcCCcHHHHHHHHH----HCCCCcEEE
Confidence 57899999999999 566665554
No 182
>KOG3103|consensus
Probab=20.66 E-value=53 Score=25.32 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=31.0
Q ss_pred eecCCcch-hhhcCCCCCc-------eEE-EeccCCcchhhhhhhhhhhhhHHHHHHHHhhc--------cccccC
Q psy12731 37 KILKDSDD-VKSLGLKNGD-------MVF-IKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRP--------WIFYGS 95 (107)
Q Consensus 37 k~L~D~kt-L~~~gi~~g~-------tL~-vKDlGpQi~wrtVf~~EY~GPl~i~~lf~~~~--------~~iy~~ 95 (107)
...+|+.. |++.||.-+. .++ +|-.+.+|== =..-+|||+++++|-++. .+|||-
T Consensus 76 ~~~edEpPLLEELgInf~hI~~KT~~VLnP~r~~~q~i~~----d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi 147 (249)
T KOG3103|consen 76 NDFEDEPPLLEELGINFDHIKQKTRAVLNPFRSADQSIMK----DTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGI 147 (249)
T ss_pred cCCCCCCchHHHhCCCHHHHHHHHhheecccccCceEEec----CcccccchHHHHHHHHHHHhcCceEEEEEeee
Confidence 45667775 6889985442 121 3333322211 123579999998885432 567764
No 183
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.50 E-value=1.9e+02 Score=16.66 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=27.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++++..||.++-+. .++++++-.+. .+|..+..++ -.+.-+++|+.|-
T Consensus 11 ~~~~~~tl~~lL~~-----l~~~~~~vav~--vNg~iv~r~~-~~~~~l~~gD~ve 58 (66)
T PRK05659 11 ELPDGESVAALLAR-----EGLAGRRVAVE--VNGEIVPRSQ-HASTALREGDVVE 58 (66)
T ss_pred EcCCCCCHHHHHHh-----cCCCCCeEEEE--ECCeEeCHHH-cCcccCCCCCEEE
Confidence 45677787777543 35666554443 6776665222 3334477888764
No 184
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=20.45 E-value=80 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=23.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
+++..+|-.+|-++|++ +-+.+|+..||.
T Consensus 195 ~ls~~~tY~~la~~Va~-~l~~dP~~lr~~ 223 (249)
T PF12436_consen 195 WLSKKMTYDQLAEKVAE-HLNVDPEHLRFF 223 (249)
T ss_dssp EEETT--HHHHHHHHHH-HHTS-GGGEEEE
T ss_pred EECCCCCHHHHHHHHHH-HHCCChHHEEEE
Confidence 56788999999999999 688999999987
No 185
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=20.35 E-value=1.6e+02 Score=17.89 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=27.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCC--ccceeEEe--cc--CCeecCCc-chh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLY--PDRQAVRL--EI--KGKILKDS-DDV 45 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~--~~rQrL~l--~~--~Gk~L~D~-ktL 45 (107)
|.|++++|..++-+.+.+ +.++. ++.=.|.- .. ..+.|.|+ +.+
T Consensus 17 i~V~~~~t~~~Vi~~~l~-k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 17 LRVSKDTTAQDVIQQLLK-KFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred EEECCCCCHHHHHHHHHH-HhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 457899999999999998 56766 33334431 12 23566554 444
No 186
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=62 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=22.4
Q ss_pred eccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 32 LEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 32 l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+.|.|+++.-.-..+.+||+..+-++|+
T Consensus 13 ldYdGSqI~~~wA~~~fgI~gdSiVvfr 40 (189)
T COG2029 13 LDYDGSQIRSAWAYRNFGIKGDSIVVFR 40 (189)
T ss_pred ccCchhhhhhhHhHhhcCcCCceEEEEe
Confidence 3488998888888899999888877654
Done!