Query psy12731
Match_columns 107
No_of_seqs 140 out of 582
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:15:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dzj_A Synaptic glycoprotein S 99.8 1.7E-20 5.8E-25 121.0 5.3 60 2-61 29-88 (88)
2 1yx5_B Ubiquitin; proteasome, 99.8 7.2E-19 2.5E-23 114.1 6.4 68 1-71 15-85 (98)
3 1v6e_A Cytoskeleton-associated 99.7 1E-17 3.6E-22 108.6 5.2 65 1-66 23-92 (95)
4 3plu_A Ubiquitin-like modifier 99.7 3.7E-17 1.3E-21 106.9 5.1 55 1-58 36-90 (93)
5 1wju_A NEDD8 ultimate buster-1 99.7 8.1E-17 2.8E-21 106.5 5.6 56 1-59 34-89 (100)
6 1uh6_A Ubiquitin-like 5; beta- 99.7 8.4E-17 2.9E-21 106.4 4.7 55 1-58 43-97 (100)
7 1t0y_A Tubulin folding cofacto 99.6 2.1E-16 7.2E-21 106.9 5.7 64 1-65 22-90 (122)
8 4b6w_A Tubulin-specific chaper 99.6 4E-16 1.4E-20 100.1 5.2 61 2-63 20-85 (86)
9 3phx_B Ubiquitin-like protein 99.6 5.3E-16 1.8E-20 96.4 5.4 55 1-58 19-73 (79)
10 2bwf_A Ubiquitin-like protein 99.6 8.8E-16 3E-20 94.4 5.4 57 1-60 18-74 (77)
11 2kk8_A Uncharacterized protein 99.6 7.6E-16 2.6E-20 98.0 4.9 55 1-58 25-80 (84)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 1.9E-15 6.6E-20 95.2 6.3 62 1-65 22-85 (87)
13 2lxa_A Ubiquitin-like protein 99.6 1.8E-15 6.2E-20 97.3 5.7 53 3-58 20-74 (87)
14 2faz_A Ubiquitin-like containi 99.6 1.5E-15 5E-20 94.0 5.1 55 1-58 18-73 (78)
15 2wyq_A HHR23A, UV excision rep 99.6 2.7E-15 9.1E-20 94.1 6.1 58 1-60 20-79 (85)
16 2hj8_A Interferon-induced 17 k 99.6 1.8E-15 6.2E-20 96.4 5.1 56 1-59 19-74 (88)
17 3u5e_m 60S ribosomal protein L 99.6 2.3E-16 7.7E-21 107.3 0.9 73 1-76 15-89 (128)
18 4fbj_B NEDD8; effector-HOST ta 99.6 1.8E-15 6.2E-20 96.5 5.0 55 1-58 15-69 (88)
19 4ajy_B Transcription elongatio 99.6 1.6E-15 5.4E-20 102.9 4.6 70 1-76 16-94 (118)
20 2kan_A Uncharacterized protein 99.6 2.8E-15 9.4E-20 97.2 5.6 56 1-59 29-85 (94)
21 1ndd_A NEDD8, protein (ubiquit 99.6 3.1E-15 1.1E-19 91.3 5.5 55 1-58 15-69 (76)
22 3m63_B Ubiquitin domain-contai 99.6 3.1E-15 1.1E-19 98.2 5.4 60 1-63 42-101 (101)
23 4a20_A Ubiquitin-like protein 99.6 3.6E-15 1.2E-19 97.9 5.7 54 2-58 37-92 (98)
24 3v6c_B Ubiquitin; structural g 99.6 3.3E-15 1.1E-19 95.5 5.2 55 1-58 32-86 (91)
25 2dzi_A Ubiquitin-like protein 99.6 3.9E-15 1.3E-19 92.3 5.4 55 1-58 22-76 (81)
26 3dbh_I NEDD8; cell cycle, acti 99.6 3.4E-15 1.2E-19 94.0 5.2 55 1-58 27-81 (88)
27 1uel_A HHR23B, UV excision rep 99.6 5.9E-15 2E-19 95.3 6.4 58 1-60 15-74 (95)
28 3n3k_B Ubiquitin; hydrolase, p 99.6 3.3E-15 1.1E-19 93.4 5.0 55 1-58 18-72 (85)
29 2kd0_A LRR repeats and ubiquit 99.6 3.3E-15 1.1E-19 95.0 5.0 56 1-59 26-81 (85)
30 1wgd_A Homocysteine-responsive 99.6 5.6E-15 1.9E-19 94.9 5.9 54 2-58 25-82 (93)
31 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.8E-15 1.3E-19 99.2 5.2 56 1-59 41-97 (105)
32 2fnj_B Transcription elongatio 99.6 3.2E-15 1.1E-19 101.4 4.7 72 1-78 16-96 (118)
33 1v5o_A 1700011N24RIK protein; 99.5 5.3E-15 1.8E-19 96.8 5.5 58 1-61 26-84 (102)
34 3m62_B UV excision repair prot 99.5 6E-15 2E-19 97.4 5.7 57 1-60 16-72 (106)
35 2uyz_B Small ubiquitin-related 99.5 3.4E-15 1.2E-19 92.7 4.2 55 1-58 18-72 (79)
36 2l7r_A Ubiquitin-like protein 99.5 4.9E-15 1.7E-19 95.5 5.1 55 1-58 32-86 (93)
37 1sif_A Ubiquitin; hydrophobic 99.5 5.4E-15 1.9E-19 94.3 5.2 55 1-58 24-78 (88)
38 3a9j_A Ubiquitin; protein comp 99.5 6.7E-15 2.3E-19 89.8 5.4 55 1-58 15-69 (76)
39 4eew_A Large proline-rich prot 99.5 5.2E-15 1.8E-19 93.7 4.9 54 1-58 32-85 (88)
40 2daf_A FLJ35834 protein; hypot 99.5 4E-15 1.4E-19 100.9 4.5 56 1-59 31-86 (118)
41 3mtn_B UBA80, ubcep1, ubiquiti 99.5 6.7E-15 2.3E-19 91.8 5.2 55 1-58 18-72 (85)
42 2kdb_A Homocysteine-responsive 99.5 5.8E-15 2E-19 97.0 5.1 56 1-58 40-98 (99)
43 1v5t_A 8430435I17RIK protein; 99.5 9E-15 3.1E-19 93.8 5.7 56 2-58 23-79 (90)
44 1wy8_A NP95-like ring finger p 99.5 1.4E-14 4.7E-19 91.8 6.3 54 2-58 25-78 (89)
45 4dwf_A HLA-B-associated transc 99.5 9.2E-15 3.1E-19 92.9 4.9 54 1-58 20-73 (90)
46 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 1.1E-14 3.9E-19 93.3 5.4 55 1-58 16-70 (96)
47 1yqb_A Ubiquilin 3; structural 99.5 8.6E-15 2.9E-19 95.8 4.9 56 1-59 36-91 (100)
48 4hcn_B Polyubiquitin, ubiquiti 99.5 9.5E-15 3.2E-19 94.8 5.0 55 1-58 37-91 (98)
49 1wx8_A Riken cDNA 4931431F19; 99.5 8.5E-15 2.9E-19 94.3 4.4 56 1-59 31-86 (96)
50 2kjr_A CG11242; UBL, ubiquitin 99.5 1.3E-14 4.5E-19 94.6 5.3 59 1-60 32-94 (95)
51 2klc_A Ubiquilin-1; ubiquitin- 99.5 1.3E-14 4.6E-19 94.9 5.1 57 1-60 39-95 (101)
52 2kj6_A Tubulin folding cofacto 99.5 1.2E-14 4E-19 95.3 4.7 60 1-63 31-97 (97)
53 1ttn_A DC-UBP, dendritic cell- 99.5 2.2E-14 7.6E-19 94.4 5.9 58 1-61 38-95 (106)
54 1wgg_A Ubiquitin carboxyl-term 99.5 1E-14 3.5E-19 94.9 4.2 54 1-58 22-75 (96)
55 3b1l_X E3 ubiquitin-protein li 99.2 1.8E-15 6E-20 93.1 0.0 55 1-58 15-69 (76)
56 2kdi_A Ubiquitin, vacuolar pro 99.5 2.6E-14 8.8E-19 95.6 5.1 62 1-65 24-88 (114)
57 1wx7_A Ubiquilin 3; ubiquitin- 99.5 2.8E-14 9.6E-19 93.7 4.8 56 1-59 31-86 (106)
58 1we6_A Splicing factor, putati 99.5 4.6E-14 1.6E-18 93.5 5.9 55 1-58 45-100 (111)
59 1wyw_B Ubiquitin-like protein 99.5 2.5E-14 8.4E-19 92.9 4.3 55 1-58 36-90 (97)
60 1we7_A SF3A1 protein; structur 99.5 3.7E-14 1.3E-18 94.6 5.3 55 1-58 50-104 (115)
61 1j8c_A Ubiquitin-like protein 99.5 5.1E-14 1.7E-18 95.7 5.3 56 1-59 46-101 (125)
62 1wxv_A BAG-family molecular ch 99.5 8.6E-14 2.9E-18 89.0 5.9 56 2-60 22-83 (92)
63 1v2y_A 3300001G02RIK protein; 99.5 1.3E-14 4.3E-19 96.5 1.9 56 1-59 22-93 (105)
64 1v86_A DNA segment, CHR 7, way 99.5 3.6E-14 1.2E-18 91.9 3.9 56 1-60 31-86 (95)
65 1x1m_A Ubiquitin-like protein 99.5 1.2E-13 4.1E-18 91.1 6.4 56 2-60 39-98 (107)
66 3vdz_A Ubiquitin-40S ribosomal 99.5 6.2E-14 2.1E-18 93.1 5.0 55 1-58 50-104 (111)
67 3rt3_B Ubiquitin-like protein 99.4 8E-14 2.7E-18 96.6 5.4 55 1-58 96-150 (159)
68 2kzr_A Ubiquitin thioesterase 99.4 9.4E-14 3.2E-18 88.2 5.3 59 3-62 17-78 (86)
69 2ojr_A Ubiquitin; lanthide-bin 99.4 1.1E-13 3.6E-18 91.8 5.2 55 1-58 50-104 (111)
70 3l0w_B Monoubiquitinated proli 99.4 1.3E-13 4.3E-18 97.9 5.6 55 1-58 15-69 (169)
71 1se9_A Ubiquitin family; ubiqu 99.4 1.4E-13 4.6E-18 94.3 5.2 51 1-53 32-88 (126)
72 2dzm_A FAS-associated factor 1 99.4 1.3E-13 4.6E-18 90.8 4.4 59 1-61 23-83 (100)
73 1wf9_A NPL4 family protein; be 99.4 2.1E-13 7.3E-18 90.1 4.7 58 1-61 21-94 (107)
74 3rt3_B Ubiquitin-like protein 99.4 3.2E-13 1.1E-17 93.5 5.5 56 1-58 17-73 (159)
75 3u30_A Ubiquitin, linear DI-ub 99.4 3.2E-13 1.1E-17 95.0 5.3 56 1-59 35-90 (172)
76 1wgh_A Ubiquitin-like 3, HCG-1 99.4 4.1E-13 1.4E-17 90.6 5.5 55 1-57 31-94 (116)
77 3q3f_A Ribonuclease/ubiquitin 99.4 3.5E-13 1.2E-17 97.7 5.2 55 1-58 120-174 (189)
78 1wia_A Hypothetical ubiquitin- 99.4 2.8E-13 9.5E-18 87.0 4.2 55 1-61 22-77 (95)
79 3b08_A Polyubiquitin-C, ubiqui 99.4 4.3E-13 1.5E-17 91.3 5.3 55 1-58 91-145 (152)
80 3b08_A Polyubiquitin-C, ubiqui 99.4 5.3E-13 1.8E-17 90.9 5.4 57 1-60 15-71 (152)
81 3u30_A Ubiquitin, linear DI-ub 99.4 4.4E-13 1.5E-17 94.2 4.9 55 1-58 111-165 (172)
82 2gow_A HCG-1 protein, ubiquiti 99.4 6.9E-13 2.4E-17 90.5 5.6 61 1-63 32-103 (125)
83 3u5c_f 40S ribosomal protein S 99.3 8.9E-14 3E-18 97.6 0.0 55 1-58 15-69 (152)
84 3ai5_A Yeast enhanced green fl 99.3 4.5E-12 1.5E-16 97.7 5.2 55 1-58 248-302 (307)
85 3shq_A UBLCP1; phosphatase, hy 99.2 6.8E-12 2.3E-16 96.9 3.5 58 1-59 19-77 (320)
86 1oqy_A HHR23A, UV excision rep 99.2 1.5E-11 5.2E-16 96.7 5.5 54 1-56 22-77 (368)
87 1wjn_A Tubulin-folding protein 99.2 4.1E-11 1.4E-15 77.4 6.4 63 2-65 28-96 (97)
88 2xzm_9 RPS31E; ribosome, trans 99.0 2.9E-11 9.9E-16 87.7 0.0 49 1-57 15-63 (189)
89 2io1_B Small ubiquitin-related 98.9 8.4E-10 2.9E-14 71.5 4.3 54 2-58 23-76 (94)
90 1wm3_A Ubiquitin-like protein 98.9 1.8E-09 6E-14 66.4 4.4 54 2-58 17-70 (72)
91 3a4r_A Nfatc2-interacting prot 98.9 2.9E-09 9.7E-14 66.8 5.2 55 2-59 24-78 (79)
92 2io0_B Small ubiquitin-related 98.8 5.5E-09 1.9E-13 67.4 5.0 54 2-58 21-74 (91)
93 2d07_B Ubiquitin-like protein 98.7 1.2E-08 4.2E-13 65.7 4.7 54 2-58 33-86 (93)
94 1wz0_A Ubiquitin-like protein 98.7 1.9E-08 6.4E-13 66.4 4.8 55 2-59 40-94 (104)
95 2k8h_A Small ubiquitin protein 98.7 2.2E-08 7.6E-13 66.7 4.5 54 2-58 42-95 (110)
96 2eke_C Ubiquitin-like protein 98.6 4.5E-08 1.6E-12 64.9 4.2 54 2-58 46-99 (106)
97 2pjh_A Protein NPL4, nuclear p 98.5 9.1E-08 3.1E-12 60.1 4.4 58 1-59 18-78 (80)
98 3kyd_D Small ubiquitin-related 98.1 4.2E-06 1.5E-10 56.1 4.4 54 2-58 56-109 (115)
99 3pge_A SUMO-modified prolifera 98.0 4.6E-06 1.6E-10 60.7 4.3 53 2-57 44-96 (200)
100 3tix_A Ubiquitin-like protein 97.9 1.2E-05 4.3E-10 58.6 4.6 54 2-58 72-125 (207)
101 4efo_A Serine/threonine-protei 97.7 2.4E-05 8.3E-10 50.7 3.7 46 1-49 28-75 (94)
102 3goe_A DNA repair protein RAD6 97.7 7.1E-05 2.4E-09 47.2 5.2 54 1-57 24-78 (82)
103 3v7o_A Minor nucleoprotein VP3 97.5 1.3E-05 4.3E-10 59.2 0.0 53 2-57 36-88 (227)
104 2kc2_A Talin-1, F1; FERM, adhe 97.4 8.5E-05 2.9E-09 50.6 3.1 57 2-59 27-120 (128)
105 2jxx_A Nfatc2-interacting prot 97.2 0.00073 2.5E-08 43.8 5.5 54 2-58 42-95 (97)
106 2bps_A YUKD protein; ubiquitin 97.0 0.00099 3.4E-08 41.9 4.6 56 2-58 22-80 (81)
107 3uf8_A Ubiquitin-like protein 97.0 0.00064 2.2E-08 49.2 4.1 53 2-57 36-88 (209)
108 3ix6_A TS, tsase, thymidylate 96.9 0.00017 5.8E-09 56.6 0.0 54 2-58 36-89 (360)
109 4da1_A Protein phosphatase 1K, 96.4 0.00048 1.6E-08 53.5 0.0 53 2-57 45-97 (389)
110 3qx1_A FAS-associated factor 1 96.1 0.015 5.2E-07 35.9 5.8 55 3-59 24-81 (84)
111 2dzk_A UBX domain-containing p 95.8 0.026 8.9E-07 36.7 5.9 59 3-62 30-91 (109)
112 2daj_A KIAA0977 protein, COBL- 95.7 0.012 4.3E-07 37.5 4.0 57 1-61 25-82 (91)
113 2l76_A Nfatc2-interacting prot 95.5 0.02 7E-07 37.0 4.6 53 3-58 37-89 (95)
114 3ivf_A Talin-1; FERM domain, c 95.5 0.019 6.6E-07 44.0 5.1 58 2-59 18-82 (371)
115 2al3_A TUG long isoform; TUG U 95.0 0.073 2.5E-06 34.0 5.9 57 1-60 24-80 (90)
116 1wj4_A KIAA0794 protein; UBX d 95.0 0.041 1.4E-06 36.7 4.9 60 3-64 60-122 (124)
117 4e71_A Plexin-B2, MM1; transme 94.2 0.082 2.8E-06 35.0 4.8 56 3-58 30-107 (111)
118 2cr5_A Reproduction 8; UBX dom 93.8 0.12 4.2E-06 33.4 5.1 57 3-61 40-98 (109)
119 1s3s_G P47 protein; AAA ATPase 93.7 0.18 6.3E-06 33.5 6.0 54 3-56 69-123 (127)
120 1y8x_B Ubiquitin-activating en 93.6 0.13 4.4E-06 33.2 4.8 62 1-63 9-86 (98)
121 4a3p_A Ubiquitin carboxyl-term 93.4 0.18 6.2E-06 36.2 5.9 56 3-59 146-206 (217)
122 3jyu_A Ubiquitin carboxyl-term 93.3 0.29 9.8E-06 35.5 6.9 64 3-67 158-226 (231)
123 2r2o_A Plexin-B1; effector dom 92.5 0.28 9.6E-06 33.6 5.5 54 3-57 47-124 (138)
124 3h6n_A Plexin-D1; structural g 89.5 0.49 1.7E-05 31.9 4.3 57 3-59 23-102 (127)
125 2kvr_A Ubiquitin carboxyl-term 89.2 0.22 7.4E-06 33.4 2.4 29 3-32 62-90 (130)
126 4e74_A Plexin-A4; RBD, structu 89.1 0.46 1.6E-05 31.6 3.9 56 3-58 33-111 (117)
127 3onh_A Ubiquitin-activating en 85.8 1.5 5.1E-05 29.5 4.9 54 6-61 19-79 (127)
128 3po0_A Small archaeal modifier 85.4 0.96 3.3E-05 27.5 3.6 50 2-58 23-82 (89)
129 1wgy_A RAP guanine nucleotide 85.0 1.1 3.7E-05 29.2 3.8 62 3-65 26-92 (104)
130 1oey_A P67-PHOX, neutrophil cy 84.5 3.3 0.00011 25.7 5.8 58 1-59 18-81 (83)
131 3rpf_C Molybdopterin convertin 83.8 1.5 5E-05 25.9 3.8 51 2-58 17-67 (74)
132 1vjk_A Molybdopterin convertin 83.8 1.3 4.4E-05 27.6 3.7 52 2-58 32-91 (98)
133 3kuz_A Plexin-C1; structural g 79.4 3.9 0.00013 27.4 5.0 55 3-57 45-122 (126)
134 2dhz_A RAP guanine nucleotide 77.0 4.2 0.00014 27.0 4.6 62 3-65 26-98 (120)
135 2q5w_D Molybdopterin convertin 76.6 3.4 0.00012 24.1 3.8 50 2-58 21-70 (77)
136 2ylm_A Ubiquitin carboxyl-term 75.8 1.3 4.4E-05 35.9 2.2 29 2-31 41-69 (530)
137 3hm6_X Plexin-B1; structural g 75.3 4.7 0.00016 33.8 5.4 56 3-58 280-358 (644)
138 2juo_A GA-binding protein alph 71.4 4.3 0.00015 25.6 3.3 49 5-56 11-59 (89)
139 1ryj_A Unknown; beta/alpha pro 70.3 10 0.00034 22.0 4.8 45 2-58 19-63 (70)
140 3qa8_A MGC80376 protein; kinas 70.3 8 0.00027 32.2 5.7 45 2-48 327-371 (676)
141 2qjl_A URM1, ubiquitin-related 69.9 6.1 0.00021 24.5 3.9 16 5-20 30-45 (99)
142 3ig3_A Plxna3 protein; plexin 68.5 4.6 0.00016 33.7 3.8 57 2-58 252-331 (627)
143 1tt5_B Ubiquitin-activating en 68.4 3.2 0.00011 32.8 2.8 67 2-69 346-430 (434)
144 2g1e_A Hypothetical protein TA 68.1 1.9 6.6E-05 25.9 1.2 56 2-58 20-83 (90)
145 2nvu_B Maltose binding protein 67.4 6.2 0.00021 32.9 4.5 58 2-60 717-790 (805)
146 3u52_E Phenol hydroxylase comp 66.9 20 0.00068 23.7 6.0 59 2-62 43-110 (119)
147 3arc_L Photosystem II reaction 66.7 2.2 7.6E-05 22.6 1.1 19 75-93 18-36 (37)
148 3arc_Y Protein YCF12; PSII, me 66.6 4.4 0.00015 20.4 2.2 18 69-86 7-24 (29)
149 2eel_A Cell death activator CI 65.5 22 0.00077 22.3 6.2 53 7-62 28-80 (91)
150 1tyg_B YJBS; alpha beta barrel 63.4 16 0.00054 22.5 4.8 49 2-58 31-80 (87)
151 4eut_A Serine/threonine-protei 60.6 7.1 0.00024 29.1 3.4 45 2-49 327-373 (396)
152 1rws_A Hypothetical protein PF 58.9 6.9 0.00024 23.1 2.5 43 2-56 26-68 (77)
153 2ylm_A Ubiquitin carboxyl-term 58.8 23 0.00077 28.5 6.2 56 2-58 357-418 (530)
154 1f0z_A THis protein; ubiquitin 58.1 21 0.00072 20.2 4.5 49 2-58 11-59 (66)
155 2l32_A Small archaeal modifier 57.8 23 0.00077 20.9 4.7 44 2-58 16-59 (74)
156 3fn2_A Putative sensor histidi 57.0 11 0.00036 24.5 3.2 58 7-73 35-92 (106)
157 2c7h_A RBBP6, retinoblastoma-b 55.9 11 0.00039 23.5 3.2 50 5-59 27-78 (86)
158 1ip9_A BEM1 protein; ubiquitin 54.7 7 0.00024 24.5 2.0 55 2-60 27-84 (85)
159 2k0q_A Putative uncharacterize 53.6 4 0.00014 24.9 0.7 16 46-61 8-24 (74)
160 3ny5_A Serine/threonine-protei 53.3 8 0.00027 24.7 2.2 25 2-27 29-53 (96)
161 1fm0_D Molybdopterin convertin 52.2 23 0.00078 20.5 4.1 48 4-58 23-74 (81)
162 3dwg_C 9.5 kDa culture filtrat 46.0 9.9 0.00034 23.0 1.7 53 5-58 24-86 (93)
163 3bz1_y Protein YCF12; electron 43.7 16 0.00056 20.2 2.2 18 69-86 24-41 (46)
164 2cu3_A Unknown function protei 41.6 46 0.0016 18.6 4.2 48 2-58 10-57 (64)
165 1wgk_A Riken cDNA 2900073H19 p 40.7 16 0.00054 23.5 2.1 48 7-58 43-101 (114)
166 2ahq_A Sigma-54, RNA polymeras 40.5 20 0.0007 21.6 2.5 45 6-70 15-59 (76)
167 1f2r_I Inhibitor of caspase-ac 40.0 71 0.0024 20.3 5.5 53 7-62 37-91 (100)
168 2hj1_A Hypothetical protein; s 39.3 35 0.0012 21.4 3.6 49 2-57 31-81 (97)
169 4gdk_A Ubiquitin-like protein 38.8 68 0.0023 19.8 5.0 53 2-58 25-82 (91)
170 2k9x_A Tburm1, uncharacterized 38.8 14 0.00049 23.6 1.7 48 7-58 35-95 (110)
171 3ge3_C Toluene-4-monooxygenase 37.8 72 0.0024 19.7 5.2 54 2-57 20-79 (84)
172 2ej7_A HCG3 gene; HCG3 protein 37.0 38 0.0013 19.7 3.4 27 1-27 15-41 (82)
173 1ibx_B Chimera of IGG binding 36.9 95 0.0032 21.1 5.6 53 7-62 82-136 (145)
174 2r2q_A Gamma-aminobutyric acid 36.3 47 0.0016 21.1 3.9 54 3-58 50-106 (110)
175 2l52_A Methanosarcina acetivor 35.5 33 0.0011 21.0 3.0 16 3-19 25-40 (99)
176 2k5p_A THis protein, thiamine- 35.1 55 0.0019 19.4 3.9 46 5-58 16-62 (78)
177 3he4_B Synzip5; heterodimeric 34.7 24 0.00083 18.9 1.9 13 6-18 2-14 (46)
178 4gmv_A RAS-associated and plec 33.6 1.1E+02 0.0038 22.6 6.1 59 1-60 46-113 (281)
179 1rrb_A RAF-1 RBD, RAF proto-on 32.9 23 0.0008 22.9 2.0 17 2-18 34-50 (107)
180 4df3_A Fibrillarin-like rRNA/T 32.4 22 0.00076 25.5 2.0 33 44-78 69-101 (233)
181 1v8c_A MOAD related protein; r 32.1 29 0.00099 23.7 2.5 55 2-58 19-80 (168)
182 1bq0_A DNAJ, HSP40; chaperone, 31.7 50 0.0017 20.2 3.4 48 1-48 9-65 (103)
183 1c1y_B Proto-onkogene serine/t 30.1 28 0.00094 21.3 1.9 27 2-29 17-43 (77)
184 3utn_X Thiosulfate sulfurtrans 29.6 42 0.0014 25.2 3.2 35 44-78 104-139 (327)
185 2ctp_A DNAJ homolog subfamily 29.3 44 0.0015 19.3 2.7 27 2-28 14-40 (78)
186 1wjz_A 1700030A21RIK protein; 29.2 53 0.0018 19.5 3.1 28 1-28 22-49 (94)
187 3hk0_A Growth factor receptor- 28.3 1.1E+02 0.0036 22.3 5.1 59 1-60 23-88 (256)
188 2kl0_A Putative thiamin biosyn 28.3 92 0.0031 18.1 5.0 48 2-58 11-58 (73)
189 1eo6_A GATE-16, golgi-associat 27.6 58 0.002 20.9 3.2 54 3-58 51-107 (117)
190 1zrj_A E1B-55KDA-associated pr 27.5 47 0.0016 18.4 2.4 18 6-25 12-29 (50)
191 1h1j_S THO1 protein; SAP domai 27.3 47 0.0016 18.5 2.4 19 5-25 6-24 (51)
192 1d4b_A CIDE B, human cell deat 26.6 51 0.0018 21.8 2.8 51 7-61 54-104 (122)
193 1hdj_A Human HSP40, HDJ-1; mol 26.3 39 0.0013 19.4 2.0 27 2-28 10-36 (77)
194 3ivf_A Talin-1; FERM domain, c 26.1 1.4E+02 0.0049 22.1 5.7 56 1-58 100-164 (371)
195 3ady_A DOTD; 3-layer(BAB) sand 25.9 6.2 0.00021 27.1 -1.9 13 58-70 117-129 (148)
196 2l05_A Serine/threonine-protei 25.8 33 0.0011 21.8 1.7 27 2-29 33-59 (95)
197 2l5g_A GPS2 protein, G protein 25.1 13 0.00043 19.8 -0.3 15 4-18 5-19 (38)
198 2v1y_A Phosphatidylinositol-4, 24.4 37 0.0013 21.9 1.8 19 1-19 34-52 (108)
199 2do1_A Nuclear protein HCC-1; 24.1 77 0.0026 17.8 2.9 19 5-25 11-29 (55)
200 3m95_A Autophagy related prote 23.9 1.3E+02 0.0046 19.6 4.5 43 3-47 59-101 (125)
201 1wgr_A Growth factor receptor- 23.6 50 0.0017 20.9 2.3 58 1-59 24-90 (100)
202 2c3g_A Alpha-amylase G-6; carb 23.0 23 0.00079 22.5 0.6 21 50-73 3-23 (98)
203 3h9d_A ATG8, microtubule-assoc 22.8 77 0.0026 20.5 3.1 43 3-47 54-96 (119)
204 1wxm_A A-RAF proto-oncogene se 22.6 69 0.0024 19.9 2.7 29 1-30 22-50 (86)
205 2kmc_A Fermitin family homolog 22.3 43 0.0015 21.5 1.7 56 3-59 39-97 (102)
206 2kvu_A MKL/myocardin-like prot 21.9 75 0.0026 19.2 2.7 19 5-25 27-45 (75)
207 2isb_A Fumarase, FUM-1; NP_069 21.3 4.9 0.00017 28.8 -3.2 32 48-81 148-180 (192)
208 3rui_B Autophagy-related prote 21.3 1.7E+02 0.0059 18.8 4.7 43 3-47 53-95 (118)
No 1
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=120.99 Aligned_cols=60 Identities=37% Similarity=0.578 Sum_probs=56.7
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+|+|++||++||++|++++++++++||||++.++||+|+|++||++|||++|++||||||
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KDL 88 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECCC
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEeC
Confidence 789999999999999995489999999999777899999999999999999999999998
No 2
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.76 E-value=7.2e-19 Score=114.06 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=54.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--Eecc-CCcchhhhhh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDL-GPQIGWSTVF 71 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDl-GpQi~wrtVf 71 (107)
++|++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|+ ++++ |+|++||||=
T Consensus 15 ~~v~~~~TV~~LK~~I~~-~~gi~~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v~ 85 (98)
T 1yx5_B 15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSVD 85 (98)
T ss_dssp EECCTTCBHHHHHHHHHH-HTCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---------
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccCC
Confidence 468899999999999999 689999999998 899999999999999999999887 7788 7999999985
No 3
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1e-17 Score=108.57 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=57.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCee----cCCcchhhhcCCCCCceEEEeccCCcch
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI----LKDSDDVKSLGLKNGDMVFIKDLGPQIG 66 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~----L~D~ktL~~~gi~~g~tL~vKDlGpQi~ 66 (107)
+++++++||++||++|++ +.|+|+++|||.+.. .|+. ++|+++|++|||++|++||+.|+|||+.
T Consensus 23 ~~v~~~~TV~~lK~ki~~-~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~ 92 (95)
T 1v6e_A 23 KRYSRSLTIAEFKCKLEL-VVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGP 92 (95)
T ss_dssp EEECTTSBHHHHHHHHHH-HTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSS
T ss_pred EEcCccCHHHHHHHHHHH-HHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccc
Confidence 368899999999999999 699999999998432 2454 4899999999999999999999999984
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.68 E-value=3.7e-17 Score=106.85 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=52.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++|++||++||++|++ +.|+|+++|||+ ++|+.|+|+.||++|+|++|+||++
T Consensus 36 v~v~p~DTI~~LK~~I~~-k~Gip~~qQrLi--f~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 36 VKCLGEDSVGDFKKVLSL-QIGTQPNKIVLQ--KGGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp EEEETTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEECCcCHHHHHHHHHHH-HhCCCHHHEEEE--eCCEEccCcCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999975
No 5
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=8.1e-17 Score=106.47 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=52.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||++||++|++ +.++|+++|||+ |+||+|+|++||++|||++|++|++-
T Consensus 34 lev~~~~TV~~lK~kI~~-k~gip~~qQrLI--~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 34 LETRLHITGRELRSKIAE-TFGLQENYIKIV--INKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEESSSBHHHHHHHHHH-HTTCCSTTCEEE--ETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEeCCcCHHHHHHHHHHH-HHCcCHHHeEEE--eCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 478999999999999999 699999999998 99999999999999999999998753
No 6
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=8.4e-17 Score=106.39 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=52.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
|+|+|++||++||++|++ ++|++++||||+ +.||+|+|++||++|||++++||++
T Consensus 43 lev~p~dTV~~lK~~Ia~-k~Gip~~qQrLi--~~Gk~L~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAA-QTGTRWNKIVLK--KWYTIFKDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred EEeCCCCcHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 699999999998 9999999999999999999999975
No 7
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.64 E-value=2.1e-16 Score=106.90 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=56.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCee---c-CCcchhhhcCCCCCceEEEeccCCcc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI---L-KDSDDVKSLGLKNGDMVFIKDLGPQI 65 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~---L-~D~ktL~~~gi~~g~tL~vKDlGpQi 65 (107)
+++++++||++||++|++ +.|+|+++|||++.. +|+. | +|+++|++|||++|++||++|+|||+
T Consensus 22 ~~v~~~~TV~~lK~ki~~-~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~ 90 (122)
T 1t0y_A 22 KKYPAGMSLNDLKKKLEL-VVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN 90 (122)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC
T ss_pred EEeCCCCcHHHHHHHHHH-HhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC
Confidence 367899999999999999 699999999999432 3453 4 78999999999999999999999998
No 8
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.62 E-value=4e-16 Score=100.14 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=55.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEec-----cCCeecCCcchhhhcCCCCCceEEEeccCC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-----IKGKILKDSDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~-----~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGp 63 (107)
.+++++||++||++|++ +.|+|+++|||++. +.|+.|+|+++|++|||++|++||+-|.-|
T Consensus 20 r~~~s~TI~~lK~ki~~-~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFT-HFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp EEETTSBHHHHHHHHHT-TSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred EcCccCcHHHHHHHHHH-HHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 47899999999999999 79999999999852 358899999999999999999999999876
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=96.39 Aligned_cols=55 Identities=29% Similarity=0.303 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 19 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~l~l 73 (79)
T 3phx_B 19 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM 73 (79)
T ss_dssp EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEECCcChHHHHHHHHHh-hcCCCHHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999874
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.60 E-value=8.8e-16 Score=94.41 Aligned_cols=57 Identities=28% Similarity=0.400 Sum_probs=53.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++.+
T Consensus 18 ~~v~~~~tV~~LK~~i~~-~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 18 VNVAPESTVLQFKEAINK-ANGIPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HhCCCHHHEEEE--ECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 468899999999999999 589999999998 999999999999999999999999875
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=7.6e-16 Score=97.98 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=51.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCee-cCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKI-LKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~-L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..|+|+++|||+ ++|+. |+|+++|++|||++|++|++
T Consensus 25 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIER-SQHIPVSKQTLI--VDGIVILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCCSSSBHHHHTCCTTSCEEE
T ss_pred EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCEEecCCcCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 99999 99999999999999999976
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.9e-15 Score=95.23 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=55.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--EeccCCcc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDLGPQI 65 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDlGpQi 65 (107)
++|++++||++||++|++ ..++++++|||. ++|+.|+|+++|++|+++++++|+ ++-+|..+
T Consensus 22 ~~v~~~~tV~~lK~~i~~-~~gi~~~~qrL~--~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~ 85 (87)
T 1wh3_A 22 YAINPNSFILGLKQQIED-QQGLPKKQQQLE--FQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPS 85 (87)
T ss_dssp EEECSSSBHHHHHHHHHH-HTCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSC
T ss_pred EEeCCCChHHHHHHHHHH-HhCCChHHEEEE--ECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 478899999999999999 689999999998 899999999999999999999875 66666554
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.8e-15 Score=97.34 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=49.3
Q ss_pred ccCCCcHHHHHHHH-HhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEE
Q psy12731 3 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I-~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~v 58 (107)
+++++||++||++| ++ .+|+|+++|||+ |+||.|+|++||++|+| ++|++|++
T Consensus 20 v~~~~TV~~lK~~I~~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISE-EKASHISEIKLL--LKGKVLHDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CCTTCBHHHHHHHHHHT-TSCSSSTTEEEE--ETTEECCTTCBHHHHCCCGGGCEEEE
T ss_pred CCCCCcHHHHHHHHHHH-hcCCChHHEEEE--ECCEECcCcCCHHHcCCCCCCCEEEE
Confidence 45999999999999 88 689999999999 99999999999999999 68999875
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=1.5e-15 Score=94.03 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=51.5
Q ss_pred Cc-ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 ME-VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 ve-v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++ |++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 18 l~~v~~~~tv~~lK~~i~~-~~gip~~~qrL~--~~g~~L~d~~tL~~~~i~~g~~i~l 73 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQE-LFHVEPGLQRLF--YRGKQMEDGHTLFDYEVRLNDTIQL 73 (78)
T ss_dssp EEEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTTTTTCCTTCEEEE
T ss_pred EeccCCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 35 8999999999999999 689999999998 8999999999999999999999985
No 15
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.58 E-value=2.7e-15 Score=94.09 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=52.9
Q ss_pred CcccCCCcHHHHHHHHHhHh--CCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~--~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
++|++++||++||++|+++. .++++++|||+ ++|+.|+|+++|++||+++|++|++-.
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE--ETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred EEECCCCCHHHHHHHHHhhccccCCCHHHeEEE--ECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 47889999999999999931 79999999998 899999999999999999999998754
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=96.38 Aligned_cols=56 Identities=29% Similarity=0.302 Sum_probs=52.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||++||++|++ ..++|+++|||+ ++|+.|+|+++|++|||++|++|++-
T Consensus 19 ~~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 19 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEESSSBHHHHHHHHHH-HTCSCTTTEEEE--SSSSCCCTTSBHHHHHCSTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 468899999999999999 699999999998 99999999999999999999999864
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.58 E-value=2.3e-16 Score=107.25 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=11.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE--EEeccCCcchhhhhhhhhhh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV--FIKDLGPQIGWSTVFMAEYA 76 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL--~vKDlGpQi~wrtVf~~EY~ 76 (107)
++|++++||++||++|++ ..++|+++|||. ++|+.|+|++||++|||++|++| +++..|..+.|....++++.
T Consensus 15 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~la~k~ 89 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKY 89 (128)
T ss_dssp -----------------------------------------------------------------CCCHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH-HhCcChHHEEEE--ECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHHHHHHh
Confidence 578999999999999999 689999999998 99999999999999999999976 48899999999998888764
No 18
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.57 E-value=1.8e-15 Score=96.50 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=51.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++|+++|||. ++|+.|+|++||++|||++|++|++
T Consensus 15 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~l~l 69 (88)
T 4fbj_B 15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL 69 (88)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCcChhHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999998874
No 19
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.57 E-value=1.6e-15 Score=102.92 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=58.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCC-------CceEE--EeccCCcchhhhhh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN-------GDMVF--IKDLGPQIGWSTVF 71 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~-------g~tL~--vKDlGpQi~wrtVf 71 (107)
+++++++||.+||++|++ +.|+|+++|||+ ++||.|+|++||++|||++ ++||+ ++ +| =.|-.+.
T Consensus 16 ldve~sdTV~~lK~kI~~-~~giPp~qQrLI--~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr-~~--~~fE~l~ 89 (118)
T 4ajy_B 16 TDAKESSTVFELKRIVEG-ILKRPPDEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-AD--DTFEALC 89 (118)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC-CS--SCCCCCC
T ss_pred EEcCCCChHHHHHHHHHH-HHCCCHHHeEEE--eCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe-cC--CCccceE
Confidence 478999999999999999 689999999998 9999999999999999999 99886 44 33 2455555
Q ss_pred hhhhh
Q psy12731 72 MAEYA 76 (107)
Q Consensus 72 ~~EY~ 76 (107)
+..|-
T Consensus 90 i~p~s 94 (118)
T 4ajy_B 90 IEPFS 94 (118)
T ss_dssp BCCCC
T ss_pred EecCC
Confidence 55443
No 20
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=2.8e-15 Score=97.17 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=52.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vK 59 (107)
++|++++||++||++|++ ..++|+++|||+ ++|+.|+|+ +||++|||++|++|++-
T Consensus 29 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 29 VEVDRTETVSSLKDKIHI-VENTPIKRMQLY--YSGIELADDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp EEECTTCBHHHHHHHHHH-HSSSCTTTEEEE--ETTEEECCTTSBHHHHTCCTTEEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHEEEE--ECCEECCCCcccHHHCCCCCCCEEEEE
Confidence 478999999999999999 699999999998 999999999 99999999999998753
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.57 E-value=3.1e-15 Score=91.28 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=51.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 ~~v~~~~tv~~lK~~i~~-~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL 69 (76)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEECCCChHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 8999999999999999999998763
No 22
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.1e-15 Score=98.17 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=54.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGp 63 (107)
++|++++||++||++|++ ..++++++|||. ++|+.|+|+++|++|||++|++|++-.-.|
T Consensus 42 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~P 101 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINK-ANGIPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHLVKSQP 101 (101)
T ss_dssp BCCCTTSBHHHHHHHHHH-HHSCCSTTCCEE--ETTEECCTTSBTTTTTCCTTEEEEECCCC-
T ss_pred EEeCCCCCHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCcCcHHHCCCCCCCEEEEEeCCC
Confidence 478999999999999999 589999999998 999999999999999999999999876554
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.56 E-value=3.6e-15 Score=97.90 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=50.2
Q ss_pred cccCCCcHHHHHHHH-HhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I-~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~v 58 (107)
+|++++||++||++| ++ .+|+++++|||+ ++|+.|+|+++|++||| ++|++|++
T Consensus 37 ~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dy~I~~~g~ti~l 92 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISE-EKASHISEIKLL--LKGKVLHDNLFLSDLKVTPANSTITV 92 (98)
T ss_dssp EECTTCBHHHHHHHHHHT-TSCSCGGGEEEE--ETTEEECTTCBGGGSCCBTTBCEEEE
T ss_pred ecCCCChHHHHHHHHHHH-hcCCChhhEEEE--ECCEECcCcCCHHHcCcCCCCCEEEE
Confidence 567999999999999 76 689999999998 99999999999999999 99999875
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.56 E-value=3.3e-15 Score=95.49 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..|+++++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 32 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l 86 (91)
T 3v6c_B 32 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 86 (91)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHh-hhCCChhhEEEE--ECCeECCCcCcHHHCCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999999985
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=92.30 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 22 ~~v~~~~tV~~LK~~i~~-~~~i~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l 76 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSE-KLNVPVRQQRLL--FKGKALADGKRLSDYSIGPNSKLNL 76 (81)
T ss_dssp EEECSSCBHHHHHHHHHH-HTCCCTTTCEEE--ETTEECCTTSBGGGGTCCSSBCCEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 8999999999999999999999875
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.56 E-value=3.4e-15 Score=93.98 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 27 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 27 IDIEPTDKVERIKERVEE-KEGIPPQQQRLI--YSGKQMNDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCcCHHHEEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 9999999999999999999999875
No 27
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=5.9e-15 Score=95.30 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=52.6
Q ss_pred CcccCCCcHHHHHHHHHhHh--CCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~--~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
++|++++||++||++|+++. .|+++++|||+ ++|+.|+|+++|++|||++|++|++-.
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 47889999999999999932 78999999998 899999999999999999999998654
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=3.3e-15 Score=93.39 Aligned_cols=55 Identities=25% Similarity=0.492 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||.+||++|++ ..++|+++|||. ++|+.|+|++||++|+|+++++|++
T Consensus 18 ~~v~~~~tV~~lK~~i~~-~~~ip~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l 72 (85)
T 3n3k_B 18 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIHNHSALYL 72 (85)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETBEECCTTCBTTTTTCCTTCEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCCCHHHEEEE--ECCeECCCCCCHHHCCCCCCCEEEE
Confidence 468899999999999999 589999999998 8999999999999999999998874
No 29
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=3.3e-15 Score=95.00 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=52.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++|++-
T Consensus 26 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQP-ITNVLPRGQKLI--FKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEECTTSBHHHHHHHHHH-HHCCCTTTCEEE--ETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 478899999999999999 689999999998 99999999999999999999999874
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=5.6e-15 Score=94.85 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=50.0
Q ss_pred cccCCCcHHHHHHHHHhHhC--CCCccceeEEeccCCeecCCcchhhhc--CCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKS--QLYPDRQAVRLEIKGKILKDSDDVKSL--GLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~--~i~~~rQrL~l~~~Gk~L~D~ktL~~~--gi~~g~tL~v 58 (107)
++++++||++||++|++ .. ++++++|||+ ++|+.|+|+++|++| +|+++++||+
T Consensus 25 ~v~~~~TV~~lK~~I~~-~~~~~i~~~~QrLi--~~Gk~L~D~~tL~~~~~~i~~~~~i~l 82 (93)
T 1wgd_A 25 SGDRGWSVGHLKAHLSR-VYPERPRPEDQRLI--YSGKLLLDHQCLRDLLPKQEKRHVLHL 82 (93)
T ss_dssp ECCTTSCHHHHHHHHHH-HSTTCCCTTTCEEE--ETTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred ecCCCCcHHHHHHHHHH-HhcCCCChHHeEEE--ECCEECcCcCCHHHHhcCCCCCCEEEE
Confidence 46699999999999999 56 9999999998 999999999999999 9999999874
No 31
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=3.8e-15 Score=99.19 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCC-CCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGL-KNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi-~~g~tL~vK 59 (107)
++|+|++||++||++|++ +.|+|+++|||+ ++|+.++|++||++||| ++|+++|+-
T Consensus 41 l~V~ps~TV~~LK~~I~~-k~Gipp~~QRli--~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 41 LTVRPDMTVASLKDMVFL-DYGFPPVLQQWV--IGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEECCcChHHHHHHHHHH-HhCCCHHHEEEe--ccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 478999999999999999 589999999987 89998899999999999 599998853
No 32
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.55 E-value=3.2e-15 Score=101.43 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=61.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCC-------CCceEE--EeccCCcchhhhhh
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLK-------NGDMVF--IKDLGPQIGWSTVF 71 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~-------~g~tL~--vKDlGpQi~wrtVf 71 (107)
++|++++||++||++|++ ++|+|+++|||+ ++||.|+|++||++|||+ +++||+ ++ .|- .|-.+.
T Consensus 16 lev~~sdTV~~lK~kI~~-~egIP~~qQrLi--~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g--~fe~l~ 89 (118)
T 2fnj_B 16 TDAKESSTVFELKRIVEG-ILKRPPEEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADD--TFEALR 89 (118)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSS--CBCCCC
T ss_pred EEeCCcChHHHHHHHHHH-HhCCCHHHeEEE--ECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCC--ceeeeE
Confidence 478999999999999999 699999999998 999999999999999999 688775 67 433 466777
Q ss_pred hhhhhhh
Q psy12731 72 MAEYAGP 78 (107)
Q Consensus 72 ~~EY~GP 78 (107)
+..|--|
T Consensus 90 i~~~s~p 96 (118)
T 2fnj_B 90 IEPFSSP 96 (118)
T ss_dssp BCCCCCC
T ss_pred EecCCCC
Confidence 6666544
No 33
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=5.3e-15 Score=96.83 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=53.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vKDl 61 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|+ +||++|||++|++|++..-
T Consensus 26 i~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCEL-ESGVPAEEAQIV--YMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEECTTCBHHHHHHHHHH-HTCCCGGGBCEE--ETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEcCCCCCHHHHHHHHHH-HHCcChHHeEEE--ECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 468999999999999999 699999999998 899999887 7999999999999998754
No 34
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6e-15 Score=97.37 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=52.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
++|++++||.+||++|++ ..++++++|||+ ++|+.|+|+++|++|||++|++|++--
T Consensus 16 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQ-SISCEESQIKLI--YSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp ECCCTTSBHHHHHHHHHH-TTTSCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEECCCCcHHHHHHHHHH-HHCCChhhEEEE--ECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 478999999999999999 689999999998 999999999999999999999998653
No 35
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.55 E-value=3.4e-15 Score=92.67 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ +.++|+++|||. |+|+.|+|++|+++||+++|++|++
T Consensus 18 ~~v~~~~tv~~lk~~i~~-~~gi~~~~qrL~--~~G~~L~d~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 18 FKVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCHHHHTCCTTEEEEE
T ss_pred EEECCCChHHHHHHHHHH-HHCCCcccEEEE--ECCEEeCCCCCHHHcCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999999874
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=4.9e-15 Score=95.54 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++|+++|||+ ++|+.|+|+++|++|||++|++|++
T Consensus 32 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 32 FEVTGQETVAQIKAHVAS-LEGIAPEDQVVL--LAGAPLEDEATLGQCGVEALTTLEV 86 (93)
T ss_dssp EECCSSCBHHHHHHHHHH-HHTCCGGGCEEE--ETTEECCTTSBHHHHTCCSSCEEEE
T ss_pred EEeCCCCcHHHHHHHHHH-HhCcChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 478999999999999999 689999999998 8999999999999999999999875
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=5.4e-15 Score=94.27 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|++||++||+++|++|++
T Consensus 24 l~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 78 (88)
T ss_dssp EECCTTSBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBSGGGTCCTTCEEEE
T ss_pred EEECCCChHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 478899999999999999 689999999998 8999999999999999999998764
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.54 E-value=6.7e-15 Score=89.78 Aligned_cols=55 Identities=24% Similarity=0.449 Sum_probs=51.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 i~v~~~~tv~~lK~~i~~-~~~i~~~~q~L~--~~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQRESTLHL 69 (76)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 8999999999999999999998874
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=93.67 Aligned_cols=54 Identities=17% Similarity=0.460 Sum_probs=50.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++||+ +|++||+
T Consensus 32 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i-~g~~i~l 85 (88)
T 4eew_A 32 FIVGAQMNVKEFKEHIAA-SVSIPSEKQRLI--YQGRVLQDDKKLQEYNV-GGKVIHL 85 (88)
T ss_dssp EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTC-TTEEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCCCcHHHcCC-CCcEEEE
Confidence 468899999999999999 589999999998 99999999999999999 8999985
No 40
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4e-15 Score=100.87 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=52.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+++++++||++||+++++ ..++|+++|||+ |+||.|+|++||++|||++|.|||+-
T Consensus 31 v~v~~d~TV~dLKe~ls~-~~~iP~e~qrLI--y~GKiLKD~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSH-LLGIPHSVLQIR--YSGKILKNNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp EEECSSSCSHHHHHHHHH-HHTCCTTTEEEE--ETTEEECSSCCHHHHSCCSSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHh-hhCCChHHEEEE--ECCeEcCCcchHHHcCCCCCCEEEEE
Confidence 468899999999999999 589999999998 99999999999999999999999853
No 41
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=6.7e-15 Score=91.83 Aligned_cols=55 Identities=25% Similarity=0.475 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||.+||++|++ ..++|+++|||. ++|+.|+|+++|++|+++++++|++
T Consensus 18 ~~v~~~~tV~~lK~~i~~-~~~i~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~l~l 72 (85)
T 3mtn_B 18 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKWSTLFL 72 (85)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 9999999999999999999998874
No 42
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=97.01 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=50.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCC-ccceeEEeccCCeecCCcchhhhc--CCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDVKSL--GLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~-~~rQrL~l~~~Gk~L~D~ktL~~~--gi~~g~tL~v 58 (107)
+++++++||++||++|+++.++.+ +++|||+ |+||.|+|++||++| +|+++++|++
T Consensus 40 l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 40 ISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp EEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred EEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 367999999999999998446666 5999999 999999999999999 9999999986
No 43
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.54 E-value=9e-15 Score=93.79 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=51.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEec-cCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~-~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++++||++||++|++ ..+++++||||+.. ++|+.|+|+++|++|||++|++|++
T Consensus 23 ~v~~~~TV~~lK~~I~~-~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp SCCSSSBHHHHHHHHHH-HTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEE
T ss_pred EeCCCCCHHHHHHHHHH-HHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 78999999999999999 69999999998733 7899999999999999999999985
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=1.4e-14 Score=91.76 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=50.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|++++||++||++|++ ..++++++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 25 ~v~~~~tV~~lK~~i~~-~~gip~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l 78 (89)
T 1wy8_A 25 DVSRKATIEELRERVWA-LFDVRPECQRLF--YRGKQLENGYTLFDYDVGLNDIIQL 78 (89)
T ss_dssp EECTTCBHHHHHHHHHH-HSCCCTTTEEEE--ETTEECCSSSBHHHHTCCTTCEEEE
T ss_pred ecCCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCeECCCCCCHHHCCCCCCCEEEE
Confidence 48999999999999999 689999999998 8999999999999999999998763
No 45
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.52 E-value=9.2e-15 Score=92.87 Aligned_cols=54 Identities=17% Similarity=0.460 Sum_probs=50.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|+++|++||| +|++||+
T Consensus 20 ~~v~~~~tV~~lK~~i~~-~~gip~~~qrLi--~~Gk~L~d~~tL~~~~i-~g~~i~l 73 (90)
T 4dwf_A 20 FIVGAQMNVKEFKEHIAA-SVSIPSEKQRLI--YQGRVLQDDKKLQEYNV-GGKVIHL 73 (90)
T ss_dssp EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTC-TTEEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCeECCCCCCHHHcCC-CCcEEEE
Confidence 468899999999999999 589999999998 99999999999999999 8998874
No 46
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.52 E-value=1.1e-14 Score=93.30 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++++++|||. ++|+.|+|++||++|||++|++|++
T Consensus 16 ~~v~~~~TV~~LK~~i~~-~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 16 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHh-hhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 9999999999999999999998874
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=8.6e-15 Score=95.78 Aligned_cols=56 Identities=29% Similarity=0.549 Sum_probs=52.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|++||++|||++|++|++-
T Consensus 36 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 36 FSVTDTCTIQQLKEEISQ-RFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp EEEETTCBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 478899999999999999 689999999998 89999999999999999999998754
No 48
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.5e-15 Score=94.81 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++++++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 37 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 37 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTCBSGGGTCCTTEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HhCCChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999998874
No 49
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=8.5e-15 Score=94.28 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=52.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|++||++|||++|++||+-
T Consensus 31 ~~v~~~~TV~~LK~~I~~-~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 31 FFLAENSNVRRFKKQISK-YLHCNADRLVLI--FTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp EEEETTCCHHHHHHHHHH-HTCSCTTTBCCE--ETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 468899999999999999 689999999998 89999999999999999999999753
No 50
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.3e-14 Score=94.63 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCe---ec-CCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK---IL-KDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk---~L-~D~ktL~~~gi~~g~tL~vKD 60 (107)
+++++++||++||++|++ +.|+|+++|||.+...|+ .| +|+++|++|||++|++|++-|
T Consensus 32 ~~v~~~~TV~~LK~kI~~-~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 32 VKLAKDLTVAQLKTKLEI-LTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEETTCBHHHHHHHHHH-HHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEeCccCHHHHHHHHHHH-HHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 367899999999999999 699999999998432355 45 899999999999999999987
No 51
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=94.92 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=52.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|+++|++|||++|++|++-.
T Consensus 39 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 39 FAVPENSSVQQFKEEISK-RFKSHTDQLVLI--FAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp EEECSCCCHHHHHHHHHH-HHTCCGGGEEEE--ETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 478899999999999999 689999999998 899999999999999999999998654
No 52
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=1.2e-14 Score=95.26 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=52.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC---ee---c-CCcchhhhcCCCCCceEEEeccCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG---KI---L-KDSDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G---k~---L-~D~ktL~~~gi~~g~tL~vKDlGp 63 (107)
+++++++||++||++|++ +.|+|+++|||+ +.| +. | +|+++|++|||++|++|++-|.=|
T Consensus 31 ~~v~~~~TV~~LK~kIe~-~~Gip~~~QrLi--~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p 97 (97)
T 2kj6_A 31 ARFSPQMSVEAVKEKLWK-KCGTSVNSMALE--LYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP 97 (97)
T ss_dssp EEECTTCCHHHHHHHHHH-HHCCCTTSEEEE--EECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred EEeCCCChHHHHHHHHHH-HHCcCHHHeEEE--EecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence 368899999999999999 699999999998 544 43 4 889999999999999999998644
No 53
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=2.2e-14 Score=94.42 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
++|++++||++||++|++ ..|+++++|||+ ++|+.|+|+++|++|||++|++||+-.-
T Consensus 38 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 38 LVVRSTDTVFHMKRRLHA-AEGVEPGSQRWF--FSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp EEECTTSHHHHHHHHHHH-TTCCCSTTCEEE--ETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred EEeCCCCcHHHHHHHHHH-HHCcCcccEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 468899999999999999 699999999998 8999999999999999999999987653
No 54
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=1e-14 Score=94.86 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=50.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||.+||++|++ ..+++++||||+ ++|+.|+|+ +|++|||++|++|++
T Consensus 22 l~v~~~~TV~~lK~~I~~-~tgip~~~QkLi--~~Gk~L~D~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFA-LTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp EEEESSSCHHHHHHHHHH-HTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEEC
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCcCCCCC-CHHHCCCCCCCEEEE
Confidence 478899999999999999 699999999998 999999999 999999999999985
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.24 E-value=1.8e-15 Score=93.11 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=51.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 15 ~~v~~~~tV~~lK~~i~~-~~gi~~~~qrL~--~~gk~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAK-QQGVPADQLRVI--FAGKELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 478899999999999999 689999999998 9999999999999999999999874
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.6e-14 Score=95.57 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=54.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE--eccC-Ccc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI--KDLG-PQI 65 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v--KDlG-pQi 65 (107)
++|++++||++||++|++ ..++|+++|||+ ++|+.|+|++||++|||++|++|++ +-.| .++
T Consensus 24 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~ 88 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--WAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMG 88 (114)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCC
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCcee
Confidence 478899999999999999 689999999998 8999999999999999999998864 4444 444
No 57
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=2.8e-14 Score=93.74 Aligned_cols=56 Identities=29% Similarity=0.549 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||.+||++|++ ..++++++|||+ ++|+.|+|+++|++|||++|++|++-
T Consensus 31 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 31 FSVTDTCTIQQLKEEISQ-RFKAHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp EEEETTCCHHHHHHHHHH-HHTCCTTTEEEE--ETTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEE
Confidence 478899999999999999 689999999998 89999999999999999999998754
No 58
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=4.6e-14 Score=93.47 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=51.2
Q ss_pred CcccC-CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSG-SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~-~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++ ++||++||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 45 l~v~~l~~TV~~LK~~I~~-~~gip~~~QrL~--~~Gk~L~D~~tL~~y~I~~g~~l~l 100 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAG-EIQIPANKQKLS--GKAGFLKDNMSLAHYNVGAGEILTL 100 (111)
T ss_dssp EEESCSSSBHHHHHHHHHH-HTTCCTTTSEEE--CSSSBCCTTSBTTTTTCSSSCEEEE
T ss_pred EEecCCCCcHHHHHHHHHH-HHCCCHHHeEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 46787 9999999999999 699999999998 8999999999999999999998874
No 59
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.48 E-value=2.5e-14 Score=92.86 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ +.++++++|||+ |+|+.|+|++||++|++++|++|++
T Consensus 36 l~v~~~~tv~~lK~~i~~-~~gip~~~qrLi--f~Gk~L~d~~tl~dy~i~~g~~I~l 90 (97)
T 1wyw_B 36 FKVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV 90 (97)
T ss_dssp EEEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCHHHHTCCTTCEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCCChhhEEEE--ECCeEcCCCCCHHHCCCCCCCEEEE
Confidence 468899999999999999 689999999998 9999999999999999999999874
No 60
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.48 E-value=3.7e-14 Score=94.57 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++++++|||+ ++|+.|+|+++|++|||++|++|++
T Consensus 50 l~v~~~~TV~~LK~~I~~-~~gip~~~QrL~--~~Gk~L~D~~tL~~y~i~~g~~i~l 104 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHE-ATGMPAGKQKLQ--YEGIFIKDSNSLAYYNMASGAVIHL 104 (115)
T ss_dssp EEECSCSBTHHHHHHHHH-HSSCCTTTEEEE--ETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCCChHHEEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence 468899999999999999 699999999998 8999999999999999999998874
No 61
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=5.1e-14 Score=95.70 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||.+||++|++ ..++++++|||+ ++|+.|+|++||++|||++|++|++-
T Consensus 46 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~~gstI~lv 101 (125)
T 1j8c_A 46 FAVPENSSVQQFKEAISK-RFKSQTDQLVLI--FAGKILKDQDTLIQHGIHDGLTVHLV 101 (125)
T ss_dssp EEECTTCCHHHHHHHHHH-HHCSCSSSEEEE--ETTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 478899999999999999 689999999998 89999999999999999999998754
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=8.6e-14 Score=89.00 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=50.3
Q ss_pred cccC-----CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC-cchhhhcCCCCCceEEEec
Q psy12731 2 EVSG-----SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~-----~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D-~ktL~~~gi~~g~tL~vKD 60 (107)
++++ ++||.+||++|++ ..++++++|||+ ++|+.|+| +++|++|||++|++|++-+
T Consensus 22 ~v~~~~~~~~~TV~~LK~~i~~-~~gip~~~qrL~--~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 22 HVTSQQGSSEPVVQDLAQVVEE-VIGVPQSFQKLI--FKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EECCCSSSSSCBHHHHHHHHHH-HTCCCTTTCEEE--ETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EECCCcCcccCcHHHHHHHHHH-HHCcCHHHEEEE--ECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 5666 4999999999999 689999999998 89999988 6689999999999998765
No 63
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.3e-14 Score=96.54 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=48.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcc---------------ceeEEeccCCeecC-CcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPD---------------RQAVRLEIKGKILK-DSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~---------------rQrL~l~~~Gk~L~-D~ktL~~~gi~~g~tL~vK 59 (107)
|+|++++||++||++|++ +.+++++ +|||+ ++|+.|+ |++||++|||++|++|+|.
T Consensus 22 v~V~~~~TV~dLK~~I~~-~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~dD~~tL~dygI~~g~~l~lv 93 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTEDRKKLRDYGIRNRDEVSFI 93 (105)
T ss_dssp EEECTTCBHHHHHHHHHH-HHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECCSSSBHHHHTCCSSEEEEEE
T ss_pred EEECCCChHHHHHHHHHH-HhCCCcccccCcceeeeeecceeEEEE--eCCcCccCCcCCHHHcCCCCCCEEEEE
Confidence 578999999999999999 5788875 45877 9999996 6799999999999999853
No 64
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=3.6e-14 Score=91.93 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=50.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
+++++++||++||++|++ ..++++++|||. ++|+.| |+.+|++|||++|++|++-+
T Consensus 31 i~v~~~~TV~~LK~~I~~-~tgip~~~QrL~--~~Gk~L-dd~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHS-ITGLPPAMQKVM--YKGLVP-EDKTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp EEECTTSBHHHHHHHHHH-HHCSCSTTCCCB--SSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHeEEE--ECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence 478999999999999999 689999999998 999999 55599999999999998754
No 65
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.2e-13 Score=91.14 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred cccCC-CcHHHHHHHHHhHhC--CCCccc-eeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 2 EVSGS-FTVKDIKKEVHKAKS--QLYPDR-QAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~~-~TV~~LK~~I~~~~~--~i~~~r-QrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
+|+++ +||.+||++|++ .. ++++++ |||+ ++|+.|+|+++|++||+++|++|++-.
T Consensus 39 ~v~~~~~TV~~LK~~i~~-~~~~gip~~~~qrLi--~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 39 EYSLGGYSISFLKQLIAG-KLQESVPDPELIDLI--YCGRKLKDDQTLDFYGIQPGSTVHVLR 98 (107)
T ss_dssp SSCCCCCBHHHHHHHHHH-HCTTTCCCSSSEEEE--ETTEECCTTCBHHHHTCCTTCEEEEEE
T ss_pred ccCcccCCHHHHHHHHHH-HhccCCChhhcEEEE--ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 36676 999999999999 57 999999 9998 999999999999999999999998643
No 66
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.45 E-value=6.2e-14 Score=93.13 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++|++
T Consensus 50 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 50 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred EEeCCCCCHHHHHHHHHH-HhCCChHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 468899999999999999 589999999998 9999999999999999999998874
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.45 E-value=8e-14 Score=96.60 Aligned_cols=55 Identities=29% Similarity=0.303 Sum_probs=51.6
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..|+|+++|||. ++|+.|+|++||++|||++|++|++
T Consensus 96 ~~v~~~~tV~~lK~~i~~-~~gip~~~q~L~--~~G~~L~d~~tL~~y~i~~g~~l~l 150 (159)
T 3rt3_B 96 YEVRLTQTVAHLKQQVSG-LEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFM 150 (159)
T ss_dssp EEECTTSBHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEeCCCCCHHHHHHHHHH-HHCCCHHHEEEE--ECCeecCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999999874
No 68
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.45 E-value=9.4e-14 Score=88.21 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=53.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEeccC
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vKDlG 62 (107)
+++++||.+||++|++ +.++++++|||...+.+|.|+ |+++|++|||++|++|+++|-.
T Consensus 17 l~~~~Tv~~Lk~~I~~-~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAA-ITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHH-HTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHH-HhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 8899999999999999 689999999998666678884 6889999999999999999864
No 69
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=91.82 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++++++|||. ++|+.|+|+++|++||+++|++|++
T Consensus 50 l~v~~~~TV~~LK~~I~~-~~gip~~~qrLi--~~Gk~L~D~~tL~~~gI~~gs~I~l 104 (111)
T 2ojr_A 50 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCTTTEEEE--ETTEECCSSCBTTTTTCCTTCEEEE
T ss_pred EEeCCCCCHHHHHHHHHH-HHCcCcccEEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 468899999999999999 589999999998 8999999999999999999999874
No 70
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.43 E-value=1.3e-13 Score=97.95 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=51.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++|||++|++||+
T Consensus 15 l~v~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~~y~I~~gstI~L 69 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 69 (169)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCTTTEEEE--ETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEeCCCCCHHHHHHHHHH-HHCcCHHHEEEE--ECCccccCcCcHHHcCCCCCCEEEE
Confidence 478999999999999999 689999999998 9999999999999999999998874
No 71
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=1.4e-13 Score=94.32 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=44.9
Q ss_pred CcccCCCcHHHHHHHHHhH----hCCCCc--cceeEEeccCCeecCCcchhhhcCCCCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKA----KSQLYP--DRQAVRLEIKGKILKDSDDVKSLGLKNG 53 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~----~~~i~~--~rQrL~l~~~Gk~L~D~ktL~~~gi~~g 53 (107)
++++|++||++||++|++. ++++|+ ++|||+ |+||.|+|++||++|+|++|
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI--y~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI--SAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE--ETTEECCTTSBGGGGSCCTT
T ss_pred eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE--ECCeECcCCCcHHHcCCCcC
Confidence 3678999999999999431 567886 899998 99999999999999999988
No 72
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=90.80 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=50.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE--Eecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF--IKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~--vKDl 61 (107)
|+|++++||++||++|++ +.|+||+||||..-..|+ |+|+++|++|+|++|++|| +.|+
T Consensus 23 v~v~~~~TV~~LK~~I~~-~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILEN-ELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred EEECCCCcHHHHHHHHHH-HHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 478999999999999999 699999999996212566 9999999999999999886 4555
No 73
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=2.1e-13 Score=90.06 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=51.9
Q ss_pred Cccc-CCCcHHHHHHHHHhHhCCCCccceeEEeccCCe-----------e----cCCcchhhhcCCCCCceEEEecc
Q psy12731 1 MEVS-GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----------I----LKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~-~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk-----------~----L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
|+|+ +++||.+||++|++ +.++++++|||+ +.|+ . ++|++||++|||++|++||+.+.
T Consensus 21 v~v~~~~~Tv~~LK~kI~~-~~gip~~~QrL~--~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQD-QLQIPIHNQTLS--TNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp EEECCTTSBHHHHHHHHHH-HSCCCTTTCCCB--SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred EEECCCCCcHHHHHHHHHH-HhCcCcccCEEE--ECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 4678 99999999999999 689999999997 5655 4 57899999999999999999988
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.39 E-value=3.2e-13 Score=93.51 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=50.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc-CCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~-~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..|+|+++|||.+ + +|+.|+|++||++|||++|++|++
T Consensus 17 l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~~-~~~g~~L~d~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAV-HPSGVALQDRVPLASQGLGPGSTVLL 73 (159)
T ss_dssp EECCTTCCHHHHHHHHHH-HHCCCGGGEEEEE-ETTCCBCCTTSCGGGGTCCTTCEEEE
T ss_pred EEeCCCCcHHHHHHHHHH-HhCCCHHHEEEEE-cCCCCCCCCCCCHHHcCCCCCCEEEE
Confidence 478999999999999999 6899999999864 5 799999999999999999998863
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=94.96 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=51.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
++|++++||.+||++|++ ..++++++|||. ++|+.|+|+++|++|||++|++|++-
T Consensus 35 l~v~~~~tV~~lK~~I~~-~~gip~~~QrL~--~~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 35 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--ECCccccccCCHhHcCCcccceeeee
Confidence 478999999999999999 689999999998 89999999999999999999988743
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=4.1e-13 Score=90.64 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=47.2
Q ss_pred CcccCCCcHHHHHHHHHhH-----hCCC--CccceeEEeccCCeecCCcchhhhcCCCCC--ceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKA-----KSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNG--DMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~-----~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g--~tL~ 57 (107)
++|++++||++||++|+++ ++++ ++++|||+ |+||.|+|++||++|+|+.+ ++||
T Consensus 31 lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI--y~GK~LeD~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHGNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE--ETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE--ECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4789999999999999983 2454 69999998 99999999999999999766 4554
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.38 E-value=3.5e-13 Score=97.68 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||.+||++|++ ..++|+++|||+ ++|+.|+|++||++|||++|++|++
T Consensus 120 l~V~~s~TV~~LK~kI~~-~~gIp~~~QrLi--~~Gk~L~D~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 174 (189)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTCBGGGGTCCTTCEEEE
T ss_pred EEeCCCCcHHHHHHHHHh-ccCCCHHHEEEE--ECCEECCCCCCHHHCCCCCCCEEEE
Confidence 478999999999999999 589999999998 9999999999999999999999874
No 78
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=2.8e-13 Score=87.05 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=49.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCc-chhhhcCCCCCceEEEecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~-ktL~~~gi~~g~tL~vKDl 61 (107)
++|++++||++||++|++ .. +++|||+ ++|+.|+|+ ++|++|||++|++||+-.-
T Consensus 22 ~~v~~~~TV~~LK~~i~~-~~---~~~qrLi--~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 22 AVARPEDTVGTLKSKYFP-GQ---ESQMKLI--YQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp EEECSSSBHHHHHHHHSS-ST---TTTCEEE--ETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred EEECCCCcHHHHHHHHHh-hC---cCcEEEE--ECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 468899999999999999 44 9999998 999999999 9999999999999987554
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.38 E-value=4.3e-13 Score=91.34 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|++||++||+++|++|++
T Consensus 91 ~~v~~~~tv~~lK~~i~~-~~gi~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 91 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEeCCCCcHHHHHHHHHH-HhCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 467899999999999999 689999999998 8999999999999999999999875
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.37 E-value=5.3e-13 Score=90.88 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=52.1
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
+++++++||++||++|++ ..++|+++|||. ++|+.|+|+++|++||+++|++|++..
T Consensus 15 ~~v~~~~tv~~lK~~i~~-~~gip~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp EECCTTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HHCcChHHeEEE--ECCeECcCcccHHHhccCCCCeeEEEe
Confidence 468899999999999999 689999999998 899999999999999999999987543
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=94.24 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++||.+||++|++ +.|+|+++|||+ ++|+.|+|++||++|||++|++|++
T Consensus 111 l~v~~~~tV~~lK~~I~~-~~gip~~~q~L~--~~g~~L~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 111 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCCEE--ETTEECCTTSBSGGGTCCTTCEEEE
T ss_pred EEecCCCCHHHHHHHHHH-HhCCCceeEEEE--ECCccCCCCCcHHHhCCCCCCEEEE
Confidence 368899999999999999 689999999998 9999999999999999999999985
No 82
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.36 E-value=6.9e-13 Score=90.51 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=50.3
Q ss_pred CcccCCCcHHHHHHHHHhH-----hCCC--CccceeEEeccCCeecCCcchhhhcCCCCCc--eEE--EeccCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKA-----KSQL--YPDRQAVRLEIKGKILKDSDDVKSLGLKNGD--MVF--IKDLGP 63 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~-----~~~i--~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~--tL~--vKDlGp 63 (107)
++|++++||++||++|++. ++++ ++++|||+ |+||.|+|++||++|+|++++ +|+ ++-.||
T Consensus 32 lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI--y~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~ 103 (125)
T 2gow_A 32 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHGNVTLGALKLPFGKTTVMHLVARETLP 103 (125)
T ss_dssp EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE--SSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCS
T ss_pred EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE--ECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCC
Confidence 4789999999999999983 2566 58999998 999999999999999999775 443 555443
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.34 E-value=8.9e-14 Score=97.64 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=0.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++|+++|||+ ++|+.|+|+.||++|||++|++|++
T Consensus 15 l~V~~~~TV~~LK~~I~~-~~gip~~~QrLi--~~Gk~L~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp ----------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHH-HhCCCHHHEEEE--ECCEEccccCcHHHcCCCCCCEEEE
Confidence 578999999999999999 689999999998 9999999999999999999998863
No 84
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.26 E-value=4.5e-12 Score=97.73 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=51.7
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++|++++||++||++|++ ..++++++|||+ ++|+.|+|+++|++|||+++++|++
T Consensus 248 leV~~s~TV~dLK~kI~~-~~GIp~~~QRLi--~~Gk~L~D~~TLsdygI~~gstL~L 302 (307)
T 3ai5_A 248 LEVEPSDTIENVKAKIQD-KEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 302 (307)
T ss_dssp EEECTTCBHHHHHHHHHH-HHCCCGGGCEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcChHHEEEE--eCCeecCCCCCHHHcCCCCCCEEEE
Confidence 478899999999999999 689999999998 8999999999999999999999985
No 85
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.20 E-value=6.8e-12 Score=96.95 Aligned_cols=58 Identities=28% Similarity=0.451 Sum_probs=50.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEE-eccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
|++++++||++||++|++ ..|+||+||||+ ..++|+.|+|+.+|++|||++|++|++-
T Consensus 19 v~v~~~~Tv~~lK~~I~~-~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 19 VDLTDQDTVEVLRHEIFR-KTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp EEEETTSBHHHHHHHHHH-HHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred EEECCCCcHHHHHHHHHH-HHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 478999999999999999 689999999986 2268999999999999999999999853
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.19 E-value=1.5e-11 Score=96.69 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=49.7
Q ss_pred CcccCCCcHHHHHHHHHhH--hCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 1 MEVSGSFTVKDIKKEVHKA--KSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~--~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
|+|++++||.+||++|++. +.++++++|||+ |+||.|+|+++|++|||++|++|
T Consensus 22 leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 22 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECSSSBTTTTCCCTTSCE
T ss_pred EEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCCcCCHHHcCCCCCCEE
Confidence 4789999999999999984 257999999998 99999999999999999999987
No 87
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.19 E-value=4.1e-11 Score=77.40 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=52.7
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccC--C---eec-CCcchhhhcCCCCCceEEEeccCCcc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G---KIL-KDSDDVKSLGLKNGDMVFIKDLGPQI 65 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~--G---k~L-~D~ktL~~~gi~~g~tL~vKDlGpQi 65 (107)
.+++++||.+||++|++ ..|+++++|||.+..+ + ..| +|+++|++||+.+|++|+|.|.-|.-
T Consensus 28 ~l~~~~TV~~LK~~i~~-~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s 96 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSR-LLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS 96 (97)
T ss_dssp EEETTSBHHHHHHHHHT-TTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred ECCCCCCHHHHHHHHHH-HHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence 46788999999999999 6899999999985421 1 225 67889999999999999999987754
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.02 E-value=2.9e-11 Score=87.68 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++|++++||++||++|++ .+++|+++|||+ ++|+.|+|++||+ +++||+
T Consensus 15 LeV~~sdTV~~LK~kI~~-keGIP~~qQRLI--f~GK~LeD~~TLs-----~~STLh 63 (189)
T 2xzm_9 15 YTLEQGTSVLDLKSQISQ-DMGFEIDMMTLV--NNGFIAPNTELVT-----DDVTYY 63 (189)
T ss_dssp ---------------------------------------------------------
T ss_pred EEECCcChHHHHHHHHHH-HhCcChhHEEEE--ecCeECCCCCccc-----CCCEEE
Confidence 578999999999999999 699999999998 9999999999998 777765
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=8.4e-10 Score=71.52 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=50.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.++++++.|++++++ +.++++++|||+ |+|+.|.+++|.+++++++|++|++
T Consensus 23 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv 76 (94)
T 2io1_B 23 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV 76 (94)
T ss_dssp EEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTCEEEE
T ss_pred EECCCCHHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 67899999999999999 689999999998 9999999999999999999998864
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.88 E-value=1.8e-09 Score=66.43 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.++++++.|++++++ +.|++++++|+. |+|+.|.+++|.+++++++|++|++
T Consensus 17 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 17 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EECTTSCTHHHHHHHHH-HHTCCTTTCEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EECCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 689999999998 9999999999999999999999976
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.87 E-value=2.9e-09 Score=66.76 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=51.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+|.++++++.|++++++ +.|++++++|+. |+|+.|.+++|.+++++.+|++|+|-
T Consensus 24 ~i~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 24 SLSPDSPLKVLMSHYEE-AMGLSGHKLSFF--FDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EECTTSCHHHHHHHHHH-HHTCTTCCCEEE--ETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999999999999 689999999998 99999999999999999999999873
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.81 E-value=5.5e-09 Score=67.38 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=50.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.++++++.|++++++ +.|++++++|+. |+|+.|.+++|.+++++++|++|.+
T Consensus 21 ~vk~~t~l~kl~~~y~~-~~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv 74 (91)
T 2io0_B 21 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV 74 (91)
T ss_dssp EEETTSCTHHHHHHHHH-HTTCCSTTEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 699999999998 9999999999999999999998864
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.72 E-value=1.2e-08 Score=65.74 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=50.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.+++++..|++++++ +.+++++++||. |+|+.|.+++|.+++++.+|++|++
T Consensus 33 ~v~~~t~l~kl~~~y~~-~~gi~~~~~rf~--fdG~~l~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 33 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp EEETTSCHHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEccCCHHHHHHHHHHH-HhCCCccceEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 689999999988 9999999999999999999998864
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=1.9e-08 Score=66.39 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=51.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
+|.+++++..|++++++ +.+++++++||+ |+|+.|.+++|.+++++.+|++|++.
T Consensus 40 kVk~~t~l~kL~~~y~e-k~gi~~~~~rf~--FdG~~l~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 40 KIKRHTPLSKLMKAYCE-RQGLSMRQIRFR--FDGQPINETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp EECTTSCHHHHHHHHHH-HHTCCTTTSCEE--SSSSBCCTTSCTTTTTCCTTEEEEEC
T ss_pred EEcCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 57899999999999999 689999999998 99999999999999999999998753
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.66 E-value=2.2e-08 Score=66.72 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=50.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.+++++..|++++++ +.++++++|||+ |+|+.|.+++|.+++++.+|++|.+
T Consensus 42 kVk~~t~l~kL~~ay~e-k~gi~~~~~rfi--FdG~~L~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 42 RIKSRTALKKLIDTYCK-KQGISRNSVRFL--FDGTPIDETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp EECTTSSHHHHHHHHHH-HHTCCSSSCEEE--SSSCBCCSSSHHHHHHCSSEEEEEE
T ss_pred EECCCChHHHHHHHHHH-HhCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 689999999998 9999999999999999999999865
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.58 E-value=4.5e-08 Score=64.85 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=50.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.+++++..|++++++ +.+++++++|+. |+|+.|.+++|.+++++.+|++|.+
T Consensus 46 kIk~tt~l~kL~~ay~e-k~gi~~~~~rF~--FdG~rl~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 46 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp EEETTSCTHHHHHHHHH-HHTCCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EeCCCCHHHHHHHHHHH-HhCCCcccEEEE--ECCeEcCCCCCHHHcCCCCCCEEEE
Confidence 57899999999999999 689999999988 9999999999999999999999865
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.53 E-value=9.1e-08 Score=60.15 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC-eec--CCcchhhhcCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G-k~L--~D~ktL~~~gi~~g~tL~vK 59 (107)
|++++++|+.+|+++|++ ..+++++.|.+.+.+.. +.| .++.+|+++|++.|+.|++.
T Consensus 18 i~v~~~~t~~~L~~~I~~-~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 18 ITATKRETAATFLKKVAK-EFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCSSCCHHHHHHHHHH-HTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEcCCcChHHHHHHHHHH-HcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 578999999999999999 57899999888754443 334 36779999999999999875
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.06 E-value=4.2e-06 Score=56.14 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=49.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|.+++++..|++.+.+ +.|++++++|+. |+|+.|.+++|.+++++.+|++|.+
T Consensus 56 kIk~tt~L~KLm~aY~e-r~Gl~~~~irFl--FDG~rI~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 56 KVKMTTHLKKLKESYCQ-RQGVPMNSLRFL--FEGQRIADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp EEETTSCTHHHHHHHHH-HHTCCTTSEEEE--ETTEECCTTCCTTTTTCCTTCEEEE
T ss_pred EEccCChHHHHHHHHHH-HhCCChhhEEEE--ECCeECCCCCCHHHcCCCCCCEEEE
Confidence 56789999999999999 579999999988 9999999999999999999999864
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.02 E-value=4.6e-06 Score=60.74 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=49.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
+|.+++++..|++.+.+ +.|++++++|+. |+|+.|.+++|.+++++.+|++|.
T Consensus 44 kIk~~t~l~kL~~ay~e-r~Gi~~~~~RF~--FdG~rI~~~~TP~dL~MEdgD~Id 96 (200)
T 3pge_A 44 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE 96 (200)
T ss_dssp EECTTSCTHHHHHHHHH-HHSSCGGGEEEE--ETTEECCTTCCTTTTTCCTTEEEE
T ss_pred EEecCCHHHHHHHHHHH-HhCCChhhEEEE--ECCEEcCCCCCHHHcCCCCCCEEE
Confidence 57899999999999999 689999999998 999999999999999999999885
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.2e-05 Score=58.56 Aligned_cols=54 Identities=9% Similarity=0.195 Sum_probs=50.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|.+++++..|++.+.+ +.+++++++|+. |+|+.|.+++|.+++++.+|++|.+
T Consensus 72 KIKrtTpL~KLmeAYcE-RqGL~~~sIRFL--FDGqRI~~ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 72 KIKKTTPLRRLMEAFAK-RQGKEMDSLTFL--YDGIEIQADQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp EEETTSCTHHHHHHHHH-HTTCCGGGSCEE--ETTEECCSSCCTTTTTCCTTEEEEE
T ss_pred EEccCChHHHHHHHHHH-HhCCCcccEEEE--ECCeecCCCCCHHHcCCCCCCEEEE
Confidence 57789999999999999 689999999998 9999999999999999999999854
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.74 E-value=2.4e-05 Score=50.74 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=36.9
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--CcchhhhcC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDVKSLG 49 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D~ktL~~~g 49 (107)
+.+.++.||..+|++|++ +.|+++++|+|. ++|+.|. .++.-..|.
T Consensus 28 v~I~~~etv~~~ke~V~e-qTgIp~~~Q~LL--~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 28 IYIHSYNTATIFHELVYK-QTKIISSNQELI--YEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEETTCBHHHHHHHHHH-HHCCCGGGEEEE--ETTEEECCCTTCBGGGSC
T ss_pred EEeccchHHHHHHHHHHH-HhCCCHHHHHHH--hCCCccccCCCCccccCC
Confidence 357899999999999999 689999999998 8887764 344444444
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.70 E-value=7.1e-05 Score=47.24 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=48.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcc-ceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++|.+++||.+|-+..-+ +.+++++ +.||. |.|..|..+.++++|++.+|+.|-
T Consensus 24 f~I~~~t~v~kLi~ayc~-~~~I~~~~~Irll--FDGdRLdp~~tp~DlemeD~D~ID 78 (82)
T 3goe_A 24 LSIPVDFTVKDLIKRYCT-EVKISFHERIRLE--FEGEWLDPNDQVQSTELEDEDQVS 78 (82)
T ss_dssp EEEETTSBHHHHHHHHHH-HHTCCCCTTCEEE--ETTEECCTTSBGGGSSCCTTCEEE
T ss_pred EEecCCCCHHHHHHHHHH-HcCCCcCceEEEE--EcCcccCccCChhhhCCcCCceee
Confidence 367899999999999998 5789999 77777 999999999999999999999874
No 103
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.53 E-value=1.3e-05 Score=59.25 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=0.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
+|.+++++..|++.+.+ +.|++++++|+. |+|+.+.+++|.+++++++|++|.
T Consensus 36 KIKrtTpL~KLM~AYcE-RqGLs~~siRFL--FDGqRI~dddTPadL~MEDGDtID 88 (227)
T 3v7o_A 36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE 88 (227)
T ss_dssp --------------------------------------------------------
T ss_pred EEccCChHHHHHHHHHH-HhCCCccceEEE--ECCEecCCCCCHHHcCCCCCCEEE
Confidence 57789999999999999 689999999988 999999999999999999999884
No 104
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.42 E-value=8.5e-05 Score=50.63 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=46.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc-------------------------------------ceeEEeccCCeecCCcch
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD-------------------------------------RQAVRLEIKGKILKDSDD 44 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~-------------------------------------rQrL~l~~~Gk~L~D~kt 44 (107)
.|+.+.||.+++..|.+ +-|++.. +|+|..+..+..|++++|
T Consensus 27 ~VD~S~~V~~lv~~Ic~-kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srt 105 (128)
T 2kc2_A 27 MVDDSKTVTDMLMTICA-RIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRT 105 (128)
T ss_dssp EEEECSSHHHHHHHHHH-HHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSC
T ss_pred EeCCCcCHHHHHHHHHH-HhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCc
Confidence 47889999999999999 5677644 666653345678899999
Q ss_pred hhhcCCCCCceEEEe
Q psy12731 45 VKSLGLKNGDMVFIK 59 (107)
Q Consensus 45 L~~~gi~~g~tL~vK 59 (107)
|.+.||.++++|.+|
T Consensus 106 L~EQGI~e~~tllLR 120 (128)
T 2kc2_A 106 LREQGVEEHETLLLR 120 (128)
T ss_dssp HHHHTCCTTSEEEEE
T ss_pred HHHcCCCCCCEEEEE
Confidence 999999999999876
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.20 E-value=0.00073 Score=43.81 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=48.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.|.++++...|.+...+ +.+++++..|+. |+|..|..++|.+++++.+|++|-|
T Consensus 42 kIk~~t~l~kLm~aY~~-~~g~~~~~vrF~--FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 42 SLSRDSPLKTLMSHYEE-AMGLSGRKLSFF--FDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp EEETTSCHHHHHHHHHH-HTTCSSSCCEEE--ETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred EECCCChHHHHHHHHHH-HHCCCcccEEEE--ECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 45788999999999999 689999887877 9999999999999999999999865
No 106
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.00 E-value=0.00099 Score=41.93 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=44.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc---ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD---RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~---rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
.++...||+.|++.+.+. .+++.. .=.++...++..|.++++|++|+|++|+.|.+
T Consensus 22 RIP~~~tvK~Li~~l~ea-~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 22 RLSDYHPVKKVIDIAWQA-QSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEETTSBTTHHHHHHHHH-SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred ECCCchhHHHHHHHHHHH-hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 567889999999999984 555442 13456668899999999999999999998864
No 107
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.99 E-value=0.00064 Score=49.15 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=48.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++..+++...|+++.++ +.|++++++|+. |+|+.+.+++|-.+.+..++++|.
T Consensus 36 ~i~~~~~l~kl~~~y~~-~~g~~~~~~~f~--fdG~~i~~~~Tpk~L~~ed~d~I~ 88 (209)
T 3uf8_A 36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIE 88 (209)
T ss_dssp EEETTSCTHHHHHHHHH-HHTCCGGGCEEE--ETTEECCTTCCTTTTTCCTTEEEE
T ss_pred EEeeCCHHHHHHHHHHH-hhCCChheEEEE--ECCEeccCCCChHHhhhcccccch
Confidence 56789999999999999 689999999998 999999999999999999998774
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.85 E-value=0.00017 Score=56.60 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+|.++++...|++++++ +.|++++++|+. ++|+.|.+++|.+++++++|++|.+
T Consensus 36 kIk~~t~l~kLm~aY~~-r~G~~~~~~rFl--FdG~rI~~~~TP~~L~MEDgD~Idv 89 (360)
T 3ix6_A 36 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQTPEDLDMEDNDIIEA 89 (360)
T ss_dssp ---------------------------------------------------------
T ss_pred EEecCChHHHHHHHHHH-HhCCCcceEEEE--ECCeECCCCCChHHcCCCccchhhh
Confidence 57789999999999999 689999999988 9999999999999999999999853
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.44 E-value=0.00048 Score=53.53 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=0.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
+|..+++...|++..++ +.|++++++|+. |+|+.|.+++|-+++++++|++|.
T Consensus 45 ~i~~~~~~~~l~~~y~~-~~g~~~~~~~f~--f~G~~i~~~~Tp~~l~med~d~i~ 97 (389)
T 4da1_A 45 KIKKTTPLRRLMEAFAK-RQGKEMDSLRFL--YDGIRIQADQAPEDLDMEDNDIIE 97 (389)
T ss_dssp --------------------------------------------------------
T ss_pred EECCCChHHHHHHHHHH-HhCCCcceEEEE--ECCEEcCCCCCHHHcCCCCCCEee
Confidence 56788999999999999 689999999987 999999999999999999999874
No 110
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.15 E-value=0.015 Score=35.86 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=44.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC---CcchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~---D~ktL~~~gi~~g~tL~vK 59 (107)
...++||.+|.+-|.. .+.++...+|...+-.|.+. .++||++.|+...++|+|.
T Consensus 24 F~~~~tl~~v~~fv~~--~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 24 FLASNKLQIVFDFVAS--KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EETTSBHHHHHHHHHH--TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHH--cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 4578999999999988 35667777777556678883 4679999999999999875
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.76 E-value=0.026 Score=36.74 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=47.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--C-cchhhhcCCCCCceEEEeccC
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D-~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.++||.+|.+-|.. ..+.+...-.|...+-.|.+. | ++||++.|+...++|+++...
T Consensus 30 F~~~~tl~~v~~fV~~-~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~ 91 (109)
T 2dzk_A 30 FPSDAPLEEARQFAAQ-TVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAG 91 (109)
T ss_dssp ECTTSBHHHHHHHHHH-HHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCS
T ss_pred eCCCCCHHHHHHHHHh-ccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECc
Confidence 4678999999999998 445555566677666778886 3 679999999999999999874
No 112
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.012 Score=37.49 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=47.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEe-ccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-EIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l-~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
+.|+|..+..++--.|=+ +..++|+.--|.- .-.+..|+=+++|.+||+++ ||.+|-
T Consensus 25 vRVSP~vpL~ellp~IC~-Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 25 VRVSPHASLQELAPIICS-KCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEECSSSCTTTHHHHHHH-HTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred EEeCCCCcHHHHHHHHhh-cccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 358999999999999999 6889999987762 33578899899999999965 888885
No 113
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.53 E-value=0.02 Score=36.96 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=46.5
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+..++..+.|.+...+ +.|+++++.|+. ++|..+.++.|-++.++.+|++|-+
T Consensus 37 IK~tt~l~KL~~aYc~-r~gv~~~sirFl--fDG~rI~~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 37 LRMSEPLQSVVDHMAT-HLGVSPSRILLL--FGETELSPTATPRTLKLGVADIIDC 89 (95)
T ss_dssp ECSSSCTHHHHHHHHH-HHTSCGGGEEEE--ETTEECCTTSCHHHHTCCSSCEEEE
T ss_pred EecCChHHHHHHHHHh-hcCCChhhEEEE--ECCcCCCCCCCHhHcCCCCCCEEEE
Confidence 4566777888899888 689999999988 9999999999999999999998854
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.48 E-value=0.019 Score=43.97 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=45.2
Q ss_pred cccCCCcHHHHHHHHHhHhCC---CCccceeEEe----ccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRL----EIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~---i~~~rQrL~l----~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
.++|++||.|+-..|-++.+. .+++.=.|.. +-+|+.|++.+||+.|++.+|+.+.++
T Consensus 18 ~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 18 QFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 568999999999999884332 2455556765 346788999999999999999988765
No 115
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.01 E-value=0.073 Score=34.00 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=45.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
|.|.|++|+.|+-++--+ +.|+++++-.|. +.+|.|+=+-.+.-.|+.+|++|.+..
T Consensus 24 VKvtp~t~L~~VL~eaC~-K~gl~~~~~~Lk--h~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 24 VKVTPSTVLLQVLEDTCR-RQDFNPSEYDLK--FQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ECCCTTSBHHHHHHHHHH-HTTCCGGGCEEE--ETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred EEECCCCCHHHHHHHHHH-HhCCChhhCeEE--eCCEeccccceeEecCCCCCCEEEEEE
Confidence 468999999997555444 368998877766 999999888888889999999887643
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.98 E-value=0.041 Score=36.70 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=48.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeec--CC-cchhhhcCCCCCceEEEeccCCc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--KD-SDDVKSLGLKNGDMVFIKDLGPQ 64 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L--~D-~ktL~~~gi~~g~tL~vKDlGpQ 64 (107)
...++||.+|.+-|.. . +.++..-.|...+-.|.| .| ++||++.|+...++|+|..+.+.
T Consensus 60 F~~~~tl~~V~~fV~~-~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d~~ 122 (124)
T 1wj4_A 60 LPEQAKLLALVKHVQS-K-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPS 122 (124)
T ss_dssp EETTSCHHHHHHHHHH-H-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCST
T ss_pred eCCCCCHHHHHHHHHh-c-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEccCC
Confidence 4578999999999988 4 666667777766778888 33 68999999999999999887654
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.18 E-value=0.082 Score=34.97 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=34.3
Q ss_pred ccCCCcHHHHHHHHHhHh-CCCCccce----eEEec----cCCeecCCc-------------chhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAK-SQLYPDRQ----AVRLE----IKGKILKDS-------------DDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~-~~i~~~rQ----rL~l~----~~Gk~L~D~-------------ktL~~~gi~~g~tL~v 58 (107)
|-..+||.++|++|-.+. .+.|-++. -+-|. ..|+.|.|. .||+.|+|.+|++|-+
T Consensus 30 VLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l 107 (111)
T 4e71_A 30 VLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLIL 107 (111)
T ss_dssp EETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred eeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEE
Confidence 446899999999999753 34444331 11122 235666552 2799999999999864
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.79 E-value=0.12 Score=33.37 Aligned_cols=57 Identities=7% Similarity=0.110 Sum_probs=45.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecC--CcchhhhcCCCCCceEEEecc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~--D~ktL~~~gi~~g~tL~vKDl 61 (107)
...++||.+|.+-|.. . +..+..-+|...+-.|.|. .++||++.|+...++|+|.++
T Consensus 40 F~~~~tl~~v~~fv~~-~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 40 FFKSWNSQVLLDWMMK-V-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EESSSBTHHHHHHHHH-H-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred eCCCCCHHHHHHHHHh-c-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 3578999999999997 3 4455666776556677885 367999999999999999876
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.73 E-value=0.18 Score=33.50 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCC-cchhhhcCCCCCceE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDVKSLGLKNGDMV 56 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D-~ktL~~~gi~~g~tL 56 (107)
.+.++||.+|.+-|....++.....-.|...+-.|.+.| ++||++.|+.+...|
T Consensus 69 F~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 69 FNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred eCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 467899999999999843444455667766677888865 689999999885443
No 120
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=93.59 E-value=0.13 Score=33.20 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=42.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEec--cCCe--------ecCC------cchhhhcCCCCCceEEEeccCC
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK--------ILKD------SDDVKSLGLKNGDMVFIKDLGP 63 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~--~~Gk--------~L~D------~ktL~~~gi~~g~tL~vKDlGp 63 (107)
++++++.|.+++-+.+.+ .+.+...+=.|+.. .+++ .|+. +++|.+.|+.+|.+|+|-|---
T Consensus 9 l~v~~~~TL~~lid~L~~-~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~~ 86 (98)
T 1y8x_B 9 IQFSPSAKLQEVLDYLTN-SASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT 86 (98)
T ss_dssp EECCTTCBHHHHHHHHHH-CTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTC
T ss_pred EEECCchhHHHHHHHHHh-ChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCCC
Confidence 478999999999999999 45544433344311 0133 3332 3568999999999999988643
No 121
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.39 E-value=0.18 Score=36.25 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=43.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCcc-ceeEEecc---CCeecCC-cchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEI---KGKILKD-SDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~---~Gk~L~D-~ktL~~~gi~~g~tL~vK 59 (107)
++..+||.+|++.+.+ ..+++++ .-||-..+ +...|.| ++||+++++.++.+|.+.
T Consensus 146 ~Sk~~ti~~l~~~~~~-~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 146 FSKADTIDTIEKEIRK-IFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp ECTTSBHHHHHHHHHH-HTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred EcccchHHHHHHHHHH-HhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 5788999999999999 5889987 46776322 2345665 569999999999988753
No 122
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.27 E-value=0.29 Score=35.53 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=47.0
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCcc-ceeEEecc---CCeecCC-cchhhhcCCCCCceEEEeccCCcchh
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEI---KGKILKD-SDDVKSLGLKNGDMVFIKDLGPQIGW 67 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~-rQrL~l~~---~Gk~L~D-~ktL~~~gi~~g~tL~vKDlGpQi~w 67 (107)
++..+||.+|++.+.+ ..+++++ .-||-..+ +...|.| ++||+++++.++.+|.+.=-...-+|
T Consensus 158 ~Sk~~ti~~l~~~~~~-~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 158 FSKADTIATIEKEMRK-LFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp ECTTCBHHHHHHHHHH-HTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred ecccCcHHHHHHHHHH-HhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 4788999999999999 5889987 47887533 2355665 57999999999998765332233344
No 123
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.49 E-value=0.28 Score=33.55 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=34.9
Q ss_pred ccCCCcHHHHHHHHHhHh-CCCCcccee-----EEec----cCCe-ecCCc-------------chhhhcCCCCCceEE
Q psy12731 3 VSGSFTVKDIKKEVHKAK-SQLYPDRQA-----VRLE----IKGK-ILKDS-------------DDVKSLGLKNGDMVF 57 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~-~~i~~~rQr-----L~l~----~~Gk-~L~D~-------------ktL~~~gi~~g~tL~ 57 (107)
|-..+||.++|++|-++. .+.|-++ | +-|. ..|+ .|.|. .||+.|+|.+|++|-
T Consensus 47 VLdCDTItQvKeKiLDavYk~~PySq-RP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~ 124 (138)
T 2r2o_A 47 VLDCDTISQAKEKMLDQLYKGVPLTQ-RPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVA 124 (138)
T ss_dssp EETTCBHHHHHHHHHHHHTTTSCGGG-CCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEE
T ss_pred EeccccHHHHHHHHHHHHHcCCcccc-CCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEE
Confidence 446789999999999853 3444332 2 1111 2243 35543 279999999999985
No 124
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.45 E-value=0.49 Score=31.92 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=35.7
Q ss_pred ccCCCcHHHHHHHHHhHh-CCCCcc------ceeEEe--ccCCe-ecCCc-------------chhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAK-SQLYPD------RQAVRL--EIKGK-ILKDS-------------DDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~-~~i~~~------rQrL~l--~~~Gk-~L~D~-------------ktL~~~gi~~g~tL~vK 59 (107)
|-..+||.++|++|-++. .+.|-+ ...|-. ...|+ .|.|. .||+.|+|.+|++|-+.
T Consensus 23 VLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 23 AMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp EETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred eeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence 446799999999999753 344433 222211 11233 25442 27999999999998653
No 125
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.21 E-value=0.22 Score=33.44 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=25.7
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRL 32 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l 32 (107)
|..++|+.++|+.|++ ..|+++++|||..
T Consensus 62 v~k~~~~~~~~~~va~-~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 62 VLKNSSLAEFVQSLSQ-TMGFPQDQIRLWP 90 (130)
T ss_dssp CCTTSBHHHHHHHHHH-HHCCCGGGCEEEE
T ss_pred EeccCcHHHHHHHHHH-HhCCCcccEEEEE
Confidence 5568999999999999 5799999999973
No 126
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.11 E-value=0.46 Score=31.59 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=35.0
Q ss_pred ccCCCcHHHHHHHHHhHh-CCCCccce----eEEecc----CCe-ecCCc-------------chhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAK-SQLYPDRQ----AVRLEI----KGK-ILKDS-------------DDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~-~~i~~~rQ----rL~l~~----~Gk-~L~D~-------------ktL~~~gi~~g~tL~v 58 (107)
|-..+||.++|++|-.+. .+.|-++. -+-|.. .|. .|.|. .||++|+|.+|++|-+
T Consensus 33 VLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l 111 (117)
T 4e74_A 33 ILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVAL 111 (117)
T ss_dssp EETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred eecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEE
Confidence 446789999999998753 34444431 111211 233 34441 2799999999999853
No 127
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=85.77 E-value=1.5 Score=29.53 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeec-----CC--cchhhhcCCCCCceEEEecc
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL-----KD--SDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L-----~D--~ktL~~~gi~~g~tL~vKDl 61 (107)
.+|..+|-+.+.+ +.|+.. ...+.-..+.+.| +| +++|++.|+++|+.|.|.|=
T Consensus 19 ~~TL~dLV~~l~~-~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIRE-KYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHH-HHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHH-hcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 5789998888876 456542 3333211123333 12 57999999999999998874
No 128
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.39 E-value=0.96 Score=27.47 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=29.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCc---c-------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYP---D-------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~---~-------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||.+|.+.+..+.+++.. + .-++. -+|+.... +.-+++|++|.+
T Consensus 23 ~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~--VN~~~v~~-----~~~l~~gDeV~i 82 (89)
T 3po0_A 23 DVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVL--RNGEAAAL-----GEATAAGDELAL 82 (89)
T ss_dssp ECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEE--ETTEECCT-----TSBCCTTCEEEE
T ss_pred ECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEE--ECCEECCC-----CcccCCCCEEEE
Confidence 456788999999999985333211 0 01121 34544432 455888888864
No 129
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.99 E-value=1.1 Score=29.21 Aligned_cols=62 Identities=29% Similarity=0.287 Sum_probs=39.1
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEE-eccCC--eecCCcchh--hhcCCCCCceEEEeccCCcc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKG--KILKDSDDV--KSLGLKNGDMVFIKDLGPQI 65 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~-l~~~G--k~L~D~ktL--~~~gi~~g~tL~vKDlGpQi 65 (107)
+..++|+.+++..+++ +-+...+-+.|. .+++| ..|++++.. ...++..--.+..||.-...
T Consensus 26 ~~v~~sa~eIl~~va~-kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd~~d~L 92 (104)
T 1wgy_A 26 AKVSSIAQEILKVVAE-KIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKDLADTL 92 (104)
T ss_dssp CCTTCBSHHHHHHHHH-HHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECCSSSCC
T ss_pred EeccchHHHHHHHHHH-HhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehHhcccc
Confidence 5678899999999999 456655566665 45666 345655433 33444333345568886554
No 130
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.54 E-value=3.3 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeEEecc---CCeecCCcchhhhc--CCCCC-ceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI---KGKILKDSDDVKSL--GLKNG-DMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~---~Gk~L~D~ktL~~~--gi~~g-~tL~vK 59 (107)
|.|+++.+..+|.++|++ +.+++++...|.... ++..+..++.+++. .++++ -||+.+
T Consensus 18 irvp~~~~y~~L~~~l~~-kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~C~ 81 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSK-KLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWCE 81 (83)
T ss_dssp EEECTTCCHHHHHHHHHH-HTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEEEC
T ss_pred EECCCCCCHHHHHHHHHH-HhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEEEEe
Confidence 468899999999999999 688888888887321 23335445555442 34455 355554
No 131
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=83.82 E-value=1.5 Score=25.92 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=30.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++ +.+||.+|.+.+.. ++++.....++..--+|+...+ .+.-+++|++|.+
T Consensus 17 e~-~~~tv~~ll~~L~~-~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i 67 (74)
T 3rpf_C 17 FI-KANDLKELRAILQE-KEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISL 67 (74)
T ss_dssp EE-ECSSHHHHHHHHHT-CTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEE
T ss_pred ee-CCCcHHHHHHHHHH-CcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEE
Confidence 44 56899999999988 5654432222222245655432 2445888888854
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=83.79 E-value=1.3 Score=27.62 Aligned_cols=52 Identities=23% Similarity=0.431 Sum_probs=30.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc--------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD--------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~--------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||.+|.+.+..+.+++... +.++..-.+|+... .+.-+++|++|-|
T Consensus 32 e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-----~~~~L~dGDeV~i 91 (98)
T 1vjk_A 32 ELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-----WDEELKDGDVVGV 91 (98)
T ss_dssp EECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-----TTCBCCTTCEEEE
T ss_pred ECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-----CCCCCCCCCEEEE
Confidence 4567899999999998843322110 11121123454443 2456889998865
No 133
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=79.40 E-value=3.9 Score=27.42 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=32.7
Q ss_pred ccCCCcHHHHHHHHHhHhC---CCCccc----eeEEe--ccCCeec----------CCc----chhhhcCCCCCceEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKS---QLYPDR----QAVRL--EIKGKIL----------KDS----DDVKSLGLKNGDMVF 57 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~---~i~~~r----QrL~l--~~~Gk~L----------~D~----ktL~~~gi~~g~tL~ 57 (107)
|-..+||.++|++|-.+.. +.|-++ ..|-. ...|..| .+. .||+.|+|.+|++|-
T Consensus 45 VLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatla 122 (126)
T 3kuz_A 45 VLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIK 122 (126)
T ss_dssp EETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEE
T ss_pred eecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEEE
Confidence 4467899999999987533 554432 11110 0011222 221 278999999999985
No 134
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=76.97 E-value=4.2 Score=27.03 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=38.2
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCcc------ceeEE-eccCC--eecCCcch--hhhcCCCCCceEEEeccCCcc
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPD------RQAVR-LEIKG--KILKDSDD--VKSLGLKNGDMVFIKDLGPQI 65 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~------rQrL~-l~~~G--k~L~D~kt--L~~~gi~~g~tL~vKDlGpQi 65 (107)
+..++|+.+++..+++ +-+...+ -+.|. .+++| ..|++++. ....++..--.+..||.-...
T Consensus 26 ~~v~~sa~eIl~~va~-kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~kd~~d~L 98 (120)
T 2dhz_A 26 SRLSASVQDILGSVTE-KLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEAL 98 (120)
T ss_dssp ECTTCCHHHHHHHHHH-HSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECTTTTTTC
T ss_pred EeccccHHHHHHHHHH-HhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehHhcccc
Confidence 5678999999999999 4555443 45554 45666 34565443 355555443445558875544
No 135
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=76.58 E-value=3.4 Score=24.07 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=30.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||.+|.+.+....+.+ .+.......+|+....+ .-+++|++|-+
T Consensus 21 ~~~~~~tv~~ll~~l~~~~p~~--~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i 70 (77)
T 2q5w_D 21 VLEQALTVQQFEDLLFERYPQI--NNKKFQVAVNEEFVQKS-----DFIQPNDTVAL 70 (77)
T ss_dssp CCSSCEEHHHHHHHHHHHCGGG--TTCCCEEEETTEEECTT-----SEECTTCEEEE
T ss_pred ECCCCCCHHHHHHHHHHHCcch--hcceEEEEECCEECCCC-----CCcCCCCEEEE
Confidence 4567789999999998742221 22211222567666532 45788888754
No 136
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=75.81 E-value=1.3 Score=35.85 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=25.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVR 31 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~ 31 (107)
.|..++|+.+||+++++ .-|+++++|||.
T Consensus 41 rv~k~~~~~~l~~~va~-~lg~~~~~~RlW 69 (530)
T 2ylm_A 41 KVLKNSSLAEFVQSLSQ-TMGFPQDQIRLW 69 (530)
T ss_dssp EEETTSBHHHHHHHHHH-HHTSCGGGEEEE
T ss_pred EEcCcCCHHHHHHHHHH-HhCcCcccEEEE
Confidence 35578999999999999 579999999996
No 137
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=75.32 E-value=4.7 Score=33.75 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=35.7
Q ss_pred ccCCCcHHHHHHHHHhH-hCCCCccce----eEEec----cCCe-ecCCc-------------chhhhcCCCCCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKA-KSQLYPDRQ----AVRLE----IKGK-ILKDS-------------DDVKSLGLKNGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~-~~~i~~~rQ----rL~l~----~~Gk-~L~D~-------------ktL~~~gi~~g~tL~v 58 (107)
|-..+||.++|++|-.+ ..+.|-++. -+-|. ..|. .|.|. .||++|+|.+|++|-+
T Consensus 280 VLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~v~L 358 (644)
T 3hm6_X 280 VLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVAL 358 (644)
T ss_dssp EETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEE
T ss_pred eeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcEEEE
Confidence 45689999999999964 245554432 11111 1233 35442 2799999999999864
No 138
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=71.38 E-value=4.3 Score=25.59 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
-+.++..||+.++. +-+++.+-=.+. -....|+.+++|.+-||+....+
T Consensus 11 I~epL~~Lk~LLe~-Rl~i~L~~y~f~--LQd~~L~~~k~LvdQcVqgeGlV 59 (89)
T 2juo_A 11 INEPIGNLKKLLEP-RLQCSLDAHEIC--LQDIQLDPDRSLFDQGVKTDGTV 59 (89)
T ss_dssp SSSBGGGHHHHSHH-HHCSCCSSCEEE--ETTEECCTTSBTTTSSCCCCSEE
T ss_pred ccCcHHHHHHHHHH-HhcCCcccCeEE--eeccccCCCccHHHhhcccccEE
Confidence 45678889999999 578777766655 24555999999999999886644
No 139
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=70.32 E-value=10 Score=22.01 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=29.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++...||.+|.+.+ ++++++-.+ ..+|..+..+. -+++|++|-+
T Consensus 19 ~~~~~~tv~~Ll~~l-----~~~~~~v~v--avN~~~v~~~~-----~L~~gD~V~i 63 (70)
T 1ryj_A 19 ESGAPRRIKDVLGEL-----EIPIETVVV--KKNGQIVIDEE-----EIFDGDIIEV 63 (70)
T ss_dssp EESSCCBHHHHHHHT-----TCCTTTEEE--EETTEECCTTS-----BCCTTCEEEE
T ss_pred ECCCCCcHHHHHHHh-----CCCCCCEEE--EECCEECCCcc-----cCCCCCEEEE
Confidence 456778999998765 344444333 36787776444 5788887754
No 140
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=70.28 E-value=8 Score=32.20 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=35.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL 48 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~ 48 (107)
.++++.|+.+++..|.+ ..+++++.|.+.+. .|-.+..+...+.|
T Consensus 327 ~i~~~~tl~~l~~~i~~-~T~i~~~~q~~~~~-~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 327 PVTENENLQNLKSWLQQ-DTGIPEEEQELLQA-SGLALNSAQPLTQY 371 (676)
T ss_dssp ECCTTCCHHHHHHHHHT-TSCCCSTTCEEESS-SSCCCCTTSCGGGS
T ss_pred ecCCCccHHHHHHHHHH-HhCCCHHHHHHHhc-cCCCCCCCcchhhh
Confidence 46789999999999999 69999999998753 46666655555544
No 141
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=69.93 E-value=6.1 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHhHh
Q psy12731 5 GSFTVKDIKKEVHKAK 20 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~ 20 (107)
+.+||.+|.+.+.++.
T Consensus 30 ~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 30 DPVTVGDLIDHIVSTM 45 (99)
T ss_dssp SCCBHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHC
Confidence 5789999999999853
No 142
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=68.48 E-value=4.6 Score=33.70 Aligned_cols=57 Identities=12% Similarity=0.231 Sum_probs=35.1
Q ss_pred cccCCCcHHHHHHHHHhHh-CCCCccc------eeEEe--ccCCe-ecCCc-------------chhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAK-SQLYPDR------QAVRL--EIKGK-ILKDS-------------DDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~-~~i~~~r------QrL~l--~~~Gk-~L~D~-------------ktL~~~gi~~g~tL~v 58 (107)
.|-..+||.++|++|-++. .+.|-++ ..|-. ...|+ .|.|. .||++|+|.+|++|-+
T Consensus 252 kVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dga~v~L 331 (627)
T 3ig3_A 252 KVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDGSLVAL 331 (627)
T ss_dssp EEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEE
T ss_pred EeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCCceEEE
Confidence 3456899999999999753 3443322 22211 11232 34442 2799999999999864
No 143
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=68.40 E-value=3.2 Score=32.76 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=30.4
Q ss_pred cccCCCcHHHHHHHHHhHhCC--CCccc--------eeEEeccCCeecC------CcchhhhcCCCCCceEEEec--cCC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQ--LYPDR--------QAVRLEIKGKILK------DSDDVKSLGLKNGDMVFIKD--LGP 63 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~--i~~~r--------QrL~l~~~Gk~L~------D~ktL~~~gi~~g~tL~vKD--lGp 63 (107)
+++++.|+.++-+.+.+ +++ +.... .++........|+ -+++|++.|+.+|+.|.|-| +--
T Consensus 346 ~~~~~~tl~~~~~~l~~-~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~d~~~~~ 424 (434)
T 1tt5_B 346 QFSPSAKLQEVLDYLTN-SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQ 424 (434)
T ss_dssp CC-----CTTHHHHHHH-CSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECCCTTCSS
T ss_pred EECCCccHHHHHHHHhc-cCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEECCCCcc
Confidence 45667788888788877 333 21111 2322111112222 15689999999999999999 544
Q ss_pred cchhhh
Q psy12731 64 QIGWST 69 (107)
Q Consensus 64 Qi~wrt 69 (107)
.+.+|.
T Consensus 425 ~~~~~~ 430 (434)
T 1tt5_B 425 TVLFKL 430 (434)
T ss_dssp CCEEC-
T ss_pred cEEEEE
Confidence 444333
No 144
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=68.11 E-value=1.9 Score=25.90 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=30.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc--------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD--------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~--------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++..+||.+|.+.+..+.+++... +.++..-.+|+.....+ -.+.-+++|++|.+
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDL 83 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEE
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEE
Confidence 4556689999999998842322110 01122224555443111 12345888988865
No 145
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=67.37 E-value=6.2 Score=32.90 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=36.9
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccc----------eeEEeccCCeec----C--CcchhhhcCCCCCceEEEec
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDR----------QAVRLEIKGKIL----K--DSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~r----------QrL~l~~~Gk~L----~--D~ktL~~~gi~~g~tL~vKD 60 (107)
+++++.|+.++-+.+.+ +.++.... .++........| + -+++|++.|+++|+.|.|-|
T Consensus 717 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 717 QFSPSAKLQEVLDYLTN-SASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp EECTTSBHHHHHHHHHH-CTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred EECCcChHHHHHHHHHh-hhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 46678899999888888 44422211 222211111221 1 15689999999999999999
No 146
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=66.90 E-value=20 Score=23.71 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=40.2
Q ss_pred cccCCCcHHHHHHHHHhHhC-------CCCccceeEEeccCCeecC--CcchhhhcCCCCCceEEEeccC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKS-------QLYPDRQAVRLEIKGKILK--DSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~-------~i~~~rQrL~l~~~Gk~L~--D~ktL~~~gi~~g~tL~vKDlG 62 (107)
-++|++|-.++-+.+-..-- +++-++-... -+|+... .+++|++.|+.-.+-|.++--|
T Consensus 43 p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~--l~g~pftPD~~kSLaenG~~HKs~lrf~TPg 110 (119)
T 3u52_E 43 LVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWL--LNDEPFTPKADASLKEQGIDHKSMLTVTTPG 110 (119)
T ss_dssp EECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEE--ETTEEECCCTTSBTTTTTCCTTEEEEEECTT
T ss_pred cCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEE--ECCccCCCChhhhHHHcCCCchheEEEeCCC
Confidence 36889999998887665211 2333332223 3688874 5789999999999999887554
No 147
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=66.72 E-value=2.2 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHhhccccc
Q psy12731 75 YAGPLFVYLIFYYRPWIFY 93 (107)
Q Consensus 75 Y~GPl~i~~lf~~~~~~iy 93 (107)
|.|.|+|+.+-.+++.|++
T Consensus 18 y~GLLlifvlavlFssyff 36 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 7899999988878887765
No 148
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=66.59 E-value=4.4 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.633 Sum_probs=14.3
Q ss_pred hhhhhhhhhhHHHHHHHH
Q psy12731 69 TVFMAEYAGPLFVYLIFY 86 (107)
Q Consensus 69 tVf~~EY~GPl~i~~lf~ 86 (107)
.+.++--+||++|..+++
T Consensus 7 ~l~lIv~aGP~VI~lLa~ 24 (29)
T 3arc_Y 7 MIAMIGIAGPMIIFLLAV 24 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChheeehhh
Confidence 456778899999988764
No 149
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.47 E-value=22 Score=22.30 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.+||+++..+ +.+++..--+|.|..+|..++|++-+..+ .+++.+.+---|
T Consensus 28 ~sL~EL~~K~~~-~l~l~~~~~~lvLeeDGT~VddEeyF~tL--p~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLD-ALVIATGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHH-HTTCSSSCEEEEETTTCCBCCCHHHHTTS--CSSEEEEEEETT
T ss_pred CCHHHHHHHHHH-HhcCCCCCcEEEEeeCCcEEechhhhhhC--CCCCEEEEEcCC
Confidence 478889988887 56776556778888899999888766543 355555544333
No 150
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=63.37 E-value=16 Score=22.51 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=29.8
Q ss_pred cccCC-CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGS-FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~-~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++. .||.+|.+.+ ++++.+-.+ ..+|..+..+ ...+.-+++|++|-+
T Consensus 31 el~~~~~Tv~dLL~~L-----~~~~~~vaV--avNg~iV~~~-~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 31 KWKKDTGTIQDLLASY-----QLENKIVIV--ERNKEIIGKE-RYHEVELCDRDVIEI 80 (87)
T ss_dssp CCSSSCCBHHHHHHHT-----TCTTSCCEE--EETTEEECGG-GTTTSBCCSSSEEEE
T ss_pred ECCCCCCcHHHHHHHh-----CCCCCCEEE--EECCEECChh-hcCCcCCCCCCEEEE
Confidence 45566 8999997765 344444333 3677766532 234456888888754
No 151
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=60.55 E-value=7.1 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCC-ee-cCCcchhhhcC
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KI-LKDSDDVKSLG 49 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G-k~-L~D~ktL~~~g 49 (107)
.+.+..|+.++++.+++ ..+++++.|.+. +.+ .. +.-.+..+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~-~t~i~~~~q~~l--~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 327 YIHSYNTATIFHELVYK-QTKIISSNQELI--YEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EECTTCBHHHHHHHHHH-HHCCCSTTEEEE--SSSSEECCCSSCBTTSSC
T ss_pred EcCchhHHHHHHHHHHH-hcCCChhhhHHH--hcCCCCCCCCCCccccCC
Confidence 35688999999999999 579999999987 544 33 33334444443
No 152
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=58.91 E-value=6.9 Score=23.14 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=26.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL 56 (107)
++++.+||.+|.+.+ ++++++..+. .+|+....+ .-+++|++|
T Consensus 26 ~~~~~~Tv~dLl~~L-----~~~~~~v~Va--vNg~~v~~~-----~~L~dGD~V 68 (77)
T 1rws_A 26 EWREGMKVRDILRAV-----GFNTESAIAK--VNGKVVLED-----DEVKDGDFV 68 (77)
T ss_dssp CCCSSCCHHHHHHTT-----TCSSCSSCEE--ETTEEECSS-----SCCCSSCCC
T ss_pred ECCCCCcHHHHHHHh-----CCCCcCEEEE--ECCEECCCC-----CCcCCCCEE
Confidence 566778999986654 3444444433 567766543 346777765
No 153
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=58.76 E-value=23 Score=28.52 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=36.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCC---ccceeEEeccCCe---ecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLY---PDRQAVRLEIKGK---ILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~---~~rQrL~l~~~Gk---~L~D~ktL~~~gi~~g~tL~v 58 (107)
-++.+.||.||-+++++ +-+++ ..+.|+.-.+++| .++++.++++.+=....++++
T Consensus 357 ~vpK~gtV~Dll~~l~k-~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKK-AVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp CCBTTCBHHHHHHHHHT-TCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EcCCCCCHHHHHHHHHH-hcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 36788999999999998 56775 4556665456665 456777776544322444444
No 154
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=58.12 E-value=21 Score=20.17 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=29.3
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||.+|.+.+. +++.+-.+ ..+|.....+ ...+.-+++|++|-+
T Consensus 11 ~~~~~~tv~~ll~~l~-----~~~~~v~v--avN~~~v~~~-~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 11 QCAAGQTVHELLEQLD-----QRQAGAAL--AINQQIVPRE-QWAQHIVQDGDQILL 59 (66)
T ss_dssp CCCTTCCHHHHHHHHT-----CCCSSEEE--EETTEEECHH-HHTTCCCCTTEEECE
T ss_pred EcCCCCcHHHHHHHcC-----CCCCCEEE--EECCEECCch-hcCCcCCCCCCEEEE
Confidence 4567789999988763 33333332 2567665422 233456788887743
No 155
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=57.78 E-value=23 Score=20.95 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++++.+||+||-+ + .+++++.--.. -+|+.+..++ +.+|++|-+
T Consensus 16 ev~~g~Tv~dLL~---~--Lgl~~~~VvV~--vNG~~v~~d~------~l~GD~VeI 59 (74)
T 2l32_A 16 AVDDDGTYADLVR---A--VDLSPHEVTVL--VDGRPVPEDQ------SVEVDRVKV 59 (74)
T ss_dssp ECSTTCSHHHHHH---T--TCCCSSCCCEE--CCCCCCCTTS------SSCCCCEEE
T ss_pred EcCCCCcHHHHHH---H--cCCCcceEEEE--ECCEECCHHH------CCCCCEEEE
Confidence 6788899988843 3 57888776433 6788775444 234666644
No 156
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=56.96 E-value=11 Score=24.52 Aligned_cols=58 Identities=12% Similarity=0.346 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhhhhh
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMA 73 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtVf~~ 73 (107)
.+=++|+++. -...-+--|+. +..|..|.++.-- ..+...+.--+-|++.|||.-|++
T Consensus 35 ~s~~ei~~ky----~~y~~~~lrI~-D~~G~vi~~~~~~----a~~~~~vLa~~g~n~lGW~Ley~l 92 (106)
T 3fn2_A 35 LSEKELKDKY----RYYGRGYVRIT-DKDGQVITYEDGS----VQDKTVFLTNEGANKLGWKLEFLI 92 (106)
T ss_dssp SCHHHHHHHH----SSTTTCEEEEE-CTTSCBCSCCCSC----STTEEEEEEECSCCTTCCEEEEEE
T ss_pred cCHHHHHHHH----hhhcCCcEEEE-cCCCCEEecCCCC----cCcceeehhhcCCCccceEEEEEe
Confidence 3444455444 22334444543 4567777533311 123346678889999999987764
No 157
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=55.90 E-value=11 Score=23.48 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHhHhCCCCccceeEEe--ccCCeecCCcchhhhcCCCCCceEEEe
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRL--EIKGKILKDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~~rQrL~l--~~~Gk~L~D~ktL~~~gi~~g~tL~vK 59 (107)
...+|.|||.+|.++ .++....--|.+ ...|..-+|+..+ |-..++|.+|
T Consensus 27 ~~Isv~dLKr~I~~~-~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVr 78 (86)
T 2c7h_A 27 LHISLCDLKKQIMGR-EKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVR 78 (86)
T ss_dssp SEEEHHHHHHHHHHH-HTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEE
T ss_pred CEEEHHHHHHHHHHH-hCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEE
Confidence 456899999999984 455433323332 2234455554433 3334555554
No 158
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.69 E-value=7 Score=24.47 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=32.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEe---ccCCeecCCcchhhhcCCCCCceEEEec
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRL---EIKGKILKDSDDVKSLGLKNGDMVFIKD 60 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l---~~~Gk~L~D~ktL~~~gi~~g~tL~vKD 60 (107)
-|+++.+..+|+.+|.++ -++. ...+.. ...|..+.++..|+ ..++..+.|.+-|
T Consensus 27 rvP~di~~~~L~dKi~~R-Lk~~--~~~l~~ykde~~g~~i~sD~dl~-~aiqrn~KL~l~~ 84 (85)
T 1ip9_A 27 MLKGDTTYKELRSKIAPR-IDTD--NFKLQTKLFDGSGEEIKTDSQVS-NIIQAKLKISVHD 84 (85)
T ss_dssp EECSCCCHHHHHHHHHHH-HTSS--CEEEEECCSSSCCSCCCSHHHHH-HHHHTTCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHH-hccc--ceEEEEecCCCCCCcccCHHHHH-HHHHhcCeeEEec
Confidence 478999999999999994 4453 333321 22455666555553 2244555555443
No 159
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=53.57 E-value=4 Score=24.85 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=11.7
Q ss_pred hhcCCCCCceEE-Eecc
Q psy12731 46 KSLGLKNGDMVF-IKDL 61 (107)
Q Consensus 46 ~~~gi~~g~tL~-vKDl 61 (107)
+.+-+++|+||| |||-
T Consensus 8 k~v~LkDGstvyiFKDG 24 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDG 24 (74)
T ss_dssp EEEEBTTSCEEEEETTS
T ss_pred eeEecCCCcEEEEEcCC
Confidence 345689999997 6763
No 160
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=53.25 E-value=8 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=12.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccc
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDR 27 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~r 27 (107)
+|-|..|+.|--.+.-+ .-++.++.
T Consensus 29 ~VrpG~tlrdaL~KaLk-~R~L~pe~ 53 (96)
T 3ny5_A 29 PARCGVTVRDSLKKALM-MRGLIPEC 53 (96)
T ss_dssp ECCTTCBHHHHHHHHHH-TTTCCGGG
T ss_pred EecCCcCHHHHHHHHHH-HcCCChHH
Confidence 34455555555444444 33454444
No 161
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=52.21 E-value=23 Score=20.48 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=27.9
Q ss_pred cCCCcHHHHHHHHHhHhCC----CCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 4 SGSFTVKDIKKEVHKAKSQ----LYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~~~~~----i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++..||.+|.+.+..+.++ ++..+-.+. .+|+.... +.-+++|++|.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~--vN~~~v~~-----~~~l~~gD~V~i 74 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAA--VNQTLVSF-----DHPLTDGDEVAF 74 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEE--ETTEECCT-----TCBCCTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEE--ECCEECCC-----CCCCCCCCEEEE
Confidence 3578999999999873211 111122222 45655432 446888888865
No 162
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=46.02 E-value=9.9 Score=22.97 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHhHhCCCCc--------cc--eeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP--------DR--QAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~--------~r--QrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+.+||.+|.+.+.++.+++.. .+ ..+..-.+|+...+..- .+.-+++|++|.|
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i 86 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTI 86 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEE
Confidence 457999999999985443210 00 01111134444432111 2456889998864
No 163
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=43.71 E-value=16 Score=20.22 Aligned_cols=18 Identities=28% Similarity=0.633 Sum_probs=14.4
Q ss_pred hhhhhhhhhhHHHHHHHH
Q psy12731 69 TVFMAEYAGPLFVYLIFY 86 (107)
Q Consensus 69 tVf~~EY~GPl~i~~lf~ 86 (107)
.+.++--+||++|..+++
T Consensus 24 ~LalIv~aGPlVI~LLa~ 41 (46)
T 3bz1_y 24 MIAMIGIAGPMIIFLLAV 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHhhhHHh
Confidence 467788899999988764
No 164
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=41.65 E-value=46 Score=18.59 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++ +.+||.+|.+.+. +++.+-.+ ..+|.....+ .-.+.-+++|++|-+
T Consensus 10 ~~-~~~tv~~ll~~l~-----~~~~~v~v--avN~~~v~~~-~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 10 PL-EGKTLKEVLEEMG-----VELKGVAV--LLNEEAFLGL-EVPDRPLRDGDVVEV 57 (64)
T ss_dssp CC-TTCCHHHHHHHHT-----BCGGGEEE--EETTEEEEGG-GCCCCCCCTTCEEEE
T ss_pred Ec-CCCcHHHHHHHcC-----CCCCcEEE--EECCEECCcc-ccCCcCCCCCCEEEE
Confidence 45 6789999988763 33333332 3567666422 223345788887754
No 165
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=40.74 E-value=16 Score=23.54 Aligned_cols=48 Identities=15% Similarity=0.330 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCC------eecCCcch---h--hhcCCCCCceEEE
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKG------KILKDSDD---V--KSLGLKNGDMVFI 58 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G------k~L~D~kt---L--~~~gi~~g~tL~v 58 (107)
+||.+|.+.+.++ ++..+.+|.. .+| ..+-|++. + .++-+++|++|.|
T Consensus 43 ~TV~~Ll~~L~~~---~~~~~~~lf~-~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 43 WDIRNLLVWIKKN---LLKERPELFI-QGDSVRPGILVLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp CBHHHHHHHHTTT---TCCSCHHHHC-CSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred CCHHHHHHHHHHH---ccchhHhhCc-cCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEE
Confidence 6999999999884 3344555531 223 13434442 2 3467999999876
No 166
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=40.49 E-value=20 Score=21.64 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEeccCCcchhhhh
Q psy12731 6 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTV 70 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlGpQi~wrtV 70 (107)
..+-..+|+.|.+. +..+ ...++|.|++-.+-. ++-|-+|+-|||
T Consensus 15 ~~S~~~Ik~~Ik~l---I~~E-------d~~kPlSD~~I~~~L----------~~~Gi~IaRRTV 59 (76)
T 2ahq_A 15 GLTQGELMKLIKEI---VENE-------DKRKPYSDQEIANIL----------KEKGFKVARRTV 59 (76)
T ss_dssp SCCHHHHHHHHHHH---GGGC-------CSSSCCCHHHHHHHH----------TTTSSCCCHHHH
T ss_pred cccHHHHHHHHHHH---HHhc-------CCCCCCCHHHHHHHH----------HHcCCCccHHHH
Confidence 45778888888883 1111 246778877643322 244678899988
No 167
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=40.00 E-value=71 Score=20.32 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHhHhCCCCcc--ceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 7 FTVKDIKKEVHKAKSQLYPD--RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~--rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.++|+.+..+ +.+++.+ --+|.|..+|..++|++=+.. +.+++.+.+---|
T Consensus 37 ~SL~EL~~K~~~-~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp~nT~lmvL~~g 91 (100)
T 1f2r_I 37 SSLEELRSKACE-LLAIDKSLTPITLVLAEDGTIVDDDDYFLC--LPSNTKFVALACN 91 (100)
T ss_dssp SSHHHHHHHHHH-HHCCCGGGCSCEEEESSSCCBCCSSSSSSS--SCSCCEEEEECSS
T ss_pred CCHHHHHHHHHH-HhccCCCCCceEEEEeeCCcEEechhHhhc--CCCCCEEEEEcCC
Confidence 578899998887 4667653 357778889999988775442 3355666554444
No 168
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=39.35 E-value=35 Score=21.38 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred cccCCCcHHHHHHHHH--hHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVH--KAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~--~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~ 57 (107)
++++.+||+++-++.. .+.+.++.+...+- .+|+..+ .+.-+++|+.|-
T Consensus 31 ~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~--Vng~~v~-----~d~~L~dGDRVE 81 (97)
T 2hj1_A 31 QVDEGITVQTAITQSGILSQFPEIDLSTNKIG--IFSRPIK-----LTDVLKEGDRIE 81 (97)
T ss_dssp EEETTCBHHHHHHHHTHHHHCTTCCTTTSEEE--EEECSCC-----TTCBCCTTCEEE
T ss_pred EcCCCCcHHHHHHHcCCCccCCcccccccEEE--EcCEECC-----CCccCCCCCEEE
Confidence 5778999999887764 22445555554443 4566555 333467777653
No 169
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=38.84 E-value=68 Score=19.76 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=33.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeec-CCcchhh----hcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL-KDSDDVK----SLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L-~D~ktL~----~~gi~~g~tL~v 58 (107)
-|+.+.|++++..-|.+ +-++++++- |.+=.+...+ ..+.+++ .++ ++..||+
T Consensus 25 lVp~~~tv~~~~~~lRk-rL~l~~~~a-lFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv 82 (91)
T 4gdk_A 25 AVERTRTIQGLIDFIKK-FLKLVASEQ-LFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVL 82 (91)
T ss_dssp EEETTCBHHHHHHHHHH-HTTCCSSSC-CEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEE
T ss_pred EcCCCCCHHHHHHHHHH-HhCCCCCCe-EEEEECCccCCChhhHHHHHHHHhC--CCCEEEE
Confidence 36889999999999999 577776543 4321244333 3345543 345 4566665
No 170
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=38.78 E-value=14 Score=23.63 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCC--e------ecCCcchh-----hhcCCCCCceEEE
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKG--K------ILKDSDDV-----KSLGLKNGDMVFI 58 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~G--k------~L~D~ktL-----~~~gi~~g~tL~v 58 (107)
+||.+|-+.+.+. ++..|-+|.. .+| . +|-|++.. .++-+++|++|.|
T Consensus 35 ~TV~dLl~~L~~~---~~~~r~~lf~-~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 35 TNLNGLVQLLKTN---YVKERPDLLV-DQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp CCHHHHHHHHTTT---TCCSCHHHHB-CSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred ccHHHHHHHHHHH---ccccchhhEe-cCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEE
Confidence 5999988888873 3444655532 223 1 45455433 2367999999876
No 171
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=37.84 E-value=72 Score=19.75 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=38.2
Q ss_pred cccCCCcHHHHHHHHHhHhCCC----CccceeEEeccCCee--cCCcchhhhcCCCCCceEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQL----YPDRQAVRLEIKGKI--LKDSDDVKSLGLKNGDMVF 57 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i----~~~rQrL~l~~~Gk~--L~D~ktL~~~gi~~g~tL~ 57 (107)
.|+.++|+.++-++++.-.-|. .|.-.|.+ ..|.. +..+.|+++.|++.-.+|-
T Consensus 20 ~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr--~~G~~~~~Pr~mtVaeaGl~Pme~ve 79 (84)
T 3ge3_C 20 VVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVR--KHRSTELFPRDMTIAESGLNPTEVID 79 (84)
T ss_dssp EEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEE--ETTCSCBCCTTCBHHHHCCCTTCEEE
T ss_pred EecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEE--ECCCcccCCCCCEeeccCCCcceEEE
Confidence 5788999999999988721221 12223444 56766 8999999999999877663
No 172
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.03 E-value=38 Score=19.67 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=21.2
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDR 27 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~r 27 (107)
+.|++++|.++||....+....+-|++
T Consensus 15 Lgv~~~as~~eIk~ayr~l~~~~HPDk 41 (82)
T 2ej7_A 15 LDVPRQASSEAIKKAYRKLALKWHPDK 41 (82)
T ss_dssp TTCCTTCCHHHHHHHHHHHHTTSCTTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 467899999999999888545566665
No 173
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=36.94 E-value=95 Score=21.09 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhHhCCCCc--cceeEEeccCCeecCCcchhhhcCCCCCceEEEeccC
Q psy12731 7 FTVKDIKKEVHKAKSQLYP--DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLG 62 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~--~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDlG 62 (107)
.+.++|+.+..+ +.+++. .--+|.|..+|..++|++=+... .++..+.+---|
T Consensus 82 ~SL~EL~~K~~~-kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~nT~LmvL~~g 136 (145)
T 1ibx_B 82 SCLEDLRSKACD-ILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL--PSNTKFVALASN 136 (145)
T ss_dssp SSHHHHHHHHHH-HHTCSCTTSCCEEEETTTCCBCSSHHHHHHS--CSSCBEEEECSS
T ss_pred CCHHHHHHHHHH-HhcCCCCccccEEEEeeCCcEEechhHhhcC--CCCCEEEEECCC
Confidence 578889988877 456754 46688888999999888765543 355666554444
No 174
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=36.33 E-value=47 Score=21.06 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=33.8
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc--CCC-CCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL--GLK-NGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~--gi~-~g~tL~v 58 (107)
|+.+.||+++...|.+ +-++.+++ .|.+-.++....-+.++++. .-+ ++..||+
T Consensus 50 Vp~~~tv~~~~~~iRk-~l~l~~~~-alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi 106 (110)
T 2r2q_A 50 VPSDLTVGQFYFLIRK-RIHLRPED-ALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYV 106 (110)
T ss_dssp EETTCBHHHHHHHHHH-HTTCCTTS-CCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEE
T ss_pred eCCCCcHHHHHHHHHH-HhcCCCCC-cEEEEECCEecCccChHHHHHHHcCCCCCEEEE
Confidence 6788999999999998 56787754 45443455444455666543 112 2446654
No 175
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.53 E-value=33 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.2
Q ss_pred ccCCCcHHHHHHHHHhH
Q psy12731 3 VSGSFTVKDIKKEVHKA 19 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~ 19 (107)
++ ..||.+|.+.+..+
T Consensus 25 l~-~~tv~~ll~~L~~~ 40 (99)
T 2l52_A 25 LS-GEKVIDVLLSLTDK 40 (99)
T ss_dssp EE-CSSHHHHHHHHHHH
T ss_pred Ee-CCcHHHHHHHHHHH
Confidence 44 68999999999884
No 176
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=35.15 E-value=55 Score=19.36 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHhHhCCCC-ccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 5 GSFTVKDIKKEVHKAKSQLY-PDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~-~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+..||.+|.+.+ +++ +.+-.+- .+|..+.. ...++.-+++|+.|-+
T Consensus 16 ~~~Tl~~LL~~l-----~~~~~~~vAVa--vNg~iVpr-~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 16 ESLNVTELLSAL-----KVAQAEYVTVE--LNGEVLER-EAFDATTVKDGDAVEF 62 (78)
T ss_dssp SCEEHHHHHHHH-----TCSCTTTCCEE--ETTEECCT-THHHHCEECSSBCEEE
T ss_pred CCCcHHHHHHHc-----CCCCCCcEEEE--ECCEECCh-HHcCcccCCCCCEEEE
Confidence 568999886654 344 4444433 67776653 2345556777776643
No 177
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.74 E-value=24 Score=18.93 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=10.9
Q ss_pred CCcHHHHHHHHHh
Q psy12731 6 SFTVKDIKKEVHK 18 (107)
Q Consensus 6 ~~TV~~LK~~I~~ 18 (107)
+.||++||+-|++
T Consensus 2 sntvkelknyiqe 14 (46)
T 3he4_B 2 SNTVKELKNYIQE 14 (46)
T ss_dssp -CCHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 5799999999987
No 178
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=33.64 E-value=1.1e+02 Score=22.61 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=38.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCC-ccceeEE--eccC--CeecCCcchhhh----cCCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLY-PDRQAVR--LEIK--GKILKDSDDVKS----LGLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~-~~rQrL~--l~~~--Gk~L~D~ktL~~----~gi~~g~tL~vKD 60 (107)
|+|++++|+.||-+.+.. +.+.. .+...|. .+.- -+.|.|.+.+-+ -...+++.++|+.
T Consensus 46 l~V~~~~TA~dv~~~L~~-k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~~ 113 (281)
T 4gmv_A 46 MMVDERQTVRQVLDNLMD-KSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFME 113 (281)
T ss_dssp EEEETTCBHHHHHHHHHH-HSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEEC
T ss_pred EEECCCCcHHHHHHHHHH-hcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEEe
Confidence 578999999999998888 45554 3333343 1222 278888776544 2455667787764
No 179
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=32.94 E-value=23 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=8.0
Q ss_pred cccCCCcHHHHHHHHHh
Q psy12731 2 EVSGSFTVKDIKKEVHK 18 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~ 18 (107)
+|-|..|+.|--.+..+
T Consensus 34 ~VrpG~tlrdaL~KaLk 50 (107)
T 1rrb_A 34 NVRNGMSLHDCLMKALK 50 (107)
T ss_dssp ECCTTCBHHHHHHHHHH
T ss_pred EecCCcCHHHHHHHHHH
Confidence 34445555544444444
No 180
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=32.37 E-value=22 Score=25.48 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.3
Q ss_pred hhhhcCCCCCceEEEeccCCcchhhhhhhhhhhhh
Q psy12731 44 DVKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGP 78 (107)
Q Consensus 44 tL~~~gi~~g~tL~vKDlGpQi~wrtVf~~EY~GP 78 (107)
.|++.+++.|+++ -|+|---|.-+..+++..||
T Consensus 69 gl~~l~ikpG~~V--ldlG~G~G~~~~~la~~VG~ 101 (233)
T 4df3_A 69 GLIELPVKEGDRI--LYLGIASGTTASHMSDIIGP 101 (233)
T ss_dssp TCSCCCCCTTCEE--EEETCTTSHHHHHHHHHHCT
T ss_pred chhhcCCCCCCEE--EEecCcCCHHHHHHHHHhCC
Confidence 3566788999975 49999999999999999998
No 181
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.14 E-value=29 Score=23.73 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=28.8
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcc-------ceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPD-------RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~-------rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++. +||.+|.+.+....+++... +.++..-.+|......+ -.+.-+++|++|.|
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai 80 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDL 80 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEE
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEE
Confidence 4554 89999999998743322110 01111113454443211 12345788887765
No 182
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=31.71 E-value=50 Score=20.21 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=29.3
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcccee--------EE-eccCCeecCCcchhhhc
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQA--------VR-LEIKGKILKDSDDVKSL 48 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQr--------L~-l~~~Gk~L~D~ktL~~~ 48 (107)
+.|++++|.++||+...+....+-|++.. +. +...=..|.|+..-..|
T Consensus 9 Lgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 65 (103)
T 1bq0_A 9 LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65 (103)
T ss_dssp TSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46889999999999988754445455431 11 12344667776544333
No 183
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=30.15 E-value=28 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=16.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcccee
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQA 29 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQr 29 (107)
+|-|..|+.|--.+..+ +-++.++.=.
T Consensus 17 ~VrpG~tlrdaL~KaLk-~R~L~pe~C~ 43 (77)
T 1c1y_B 17 NVRNGMSLHDCLMKALK-VRGLQPECCA 43 (77)
T ss_dssp ECCTTCBHHHHHHHHHH-TTTCCGGGEE
T ss_pred EecCCcCHHHHHHHHHH-HcCCCHHHeE
Confidence 55666777666666666 4566665543
No 184
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=29.59 E-value=42 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=27.3
Q ss_pred hhhhcCCCCCceEEEeccC-Ccchhhhhhhhhhhhh
Q psy12731 44 DVKSLGLKNGDMVFIKDLG-PQIGWSTVFMAEYAGP 78 (107)
Q Consensus 44 tL~~~gi~~g~tL~vKDlG-pQi~wrtVf~~EY~GP 78 (107)
.++..||.++++|++=|=+ ..-+=|.-+++.|+|.
T Consensus 104 ~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh 139 (327)
T 3utn_X 104 AMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGH 139 (327)
T ss_dssp HHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCC
Confidence 5788899999999988753 3335588888888885
No 185
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.31 E-value=44 Score=19.25 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccce
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQ 28 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQ 28 (107)
.|++++|..+||....+....+-|++.
T Consensus 14 gv~~~as~~eIk~ayr~l~~~~HPDk~ 40 (78)
T 2ctp_A 14 GVSRGASDEDLKKAYRRLALKFHPDKN 40 (78)
T ss_dssp TCCTTCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999885455666653
No 186
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=29.18 E-value=53 Score=19.50 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=22.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccce
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQ 28 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQ 28 (107)
+.|++++|..+||....+....+-|++.
T Consensus 22 Lgv~~~as~~eIk~aYr~l~~~~HPDk~ 49 (94)
T 1wjz_A 22 LGADPSANMSDLKQKYQKLILLYHPDKQ 49 (94)
T ss_dssp TTCCTTCCHHHHHHHHHHTTSSSCSTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999885455667763
No 187
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=28.29 E-value=1.1e+02 Score=22.32 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=34.4
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcc-ceeEE--eccCC--eecCCcchhhhc--CCCCCceEEEec
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPD-RQAVR--LEIKG--KILKDSDDVKSL--GLKNGDMVFIKD 60 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~-rQrL~--l~~~G--k~L~D~ktL~~~--gi~~g~tL~vKD 60 (107)
|.|++++|+.||-+.+.. +.+...+ ...|. ++.-| +.|.|.+.+-+. ....++.++|+.
T Consensus 23 l~V~~~mta~ev~~~l~~-k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~k 88 (256)
T 3hk0_A 23 VEILADMTARDLCQLLVY-KSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFRK 88 (256)
T ss_dssp EEECTTCBHHHHHHHHHC-CC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHH-hcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEec
Confidence 478999999999999988 4454333 33332 22233 788887754332 344566777664
No 188
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=28.27 E-value=92 Score=18.06 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEE
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
++ +..||.+|.+. .++++.+-.+- .+|..+. ....++.-+++|+.|-+
T Consensus 11 e~-~~~Tl~~LL~~-----l~~~~~~vAV~--vNg~iVp-r~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 11 EV-QSASVAALMTE-----LDCTGGHFAVA--LNYDVVP-RGKWDETPVTAGDEIEI 58 (73)
T ss_dssp CC-CCSBHHHHHHH-----TTCCSSSCEEE--ESSSEEC-HHHHTTCBCCTTCEEEE
T ss_pred Ec-CCCcHHHHHHH-----cCCCCCcEEEE--ECCEECC-hHHcCcccCCCCCEEEE
Confidence 34 56788888553 35666555433 6776664 22345566788887754
No 189
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.57 E-value=58 Score=20.92 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhc--CCC-CCceEEE
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSL--GLK-NGDMVFI 58 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~--gi~-~g~tL~v 58 (107)
|+.+.||+++...|.+ +-++.+++ .|.+-.++....-+.++++. .-+ ++..||+
T Consensus 51 Vp~~~tv~~f~~~iRk-~l~l~~~~-alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi 107 (117)
T 1eo6_A 51 VPSDITVAQFMWIIRK-RIQLPSEK-AIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYV 107 (117)
T ss_dssp EETTSBHHHHHHHHHH-HHTCCTTS-CCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEE
T ss_pred cCCCCCHHHHHHhhHH-hhcCCCCC-cEEEEECCEecCccchHHHHHHHhCCCCCEEEE
Confidence 6788999999999998 46777754 45442445443455666542 112 2446665
No 190
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=27.48 E-value=47 Score=18.39 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHHhHhCCCCc
Q psy12731 6 SFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 6 ~~TV~~LK~~I~~~~~~i~~ 25 (107)
..||.+||+.+.++ |++.
T Consensus 12 klkV~eLK~eLk~R--gL~~ 29 (50)
T 1zrj_A 12 RLKVNELREELQRR--GLDT 29 (50)
T ss_dssp GSCHHHHHHHHHHT--TCCC
T ss_pred HCcHHHHHHHHHHc--CCCC
Confidence 57999999999983 5543
No 191
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.34 E-value=47 Score=18.46 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhHhCCCCc
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~ 25 (107)
...||.+||+.+.++ |++.
T Consensus 6 ~kltV~eLK~~Lk~R--GL~~ 24 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKR--NLSV 24 (51)
T ss_dssp GGCCHHHHHHHHHHT--TCCC
T ss_pred HHCcHHHHHHHHHHc--CCCC
Confidence 357999999999983 5554
No 192
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=26.60 E-value=51 Score=21.75 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhhcCCCCCceEEEecc
Q psy12731 7 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61 (107)
Q Consensus 7 ~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~~gi~~g~tL~vKDl 61 (107)
.+.+||+++..+ +.++ ..--+|.|..+|..++|++=+.... +++.+.+---
T Consensus 54 ~SL~EL~~K~~~-~l~l-~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~~ 104 (122)
T 1d4b_A 54 ATRQELLAKALE-TLLL-NGVLTLVLEEDGTAVDSEDFFQLLE--DDTCLMVLQS 104 (122)
T ss_dssp CCSSTHHHHHHH-HHSC-CSSCEEEETTTTEEECSTHHHHHSS--SCCCCCEECS
T ss_pred CCHHHHHHHHHH-Hhcc-CCCcEEEEEeCCcEEechhHhhcCC--CCCEEEEecC
Confidence 466788888877 4566 3455788888999998887555433 4454444333
No 193
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=26.30 E-value=39 Score=19.45 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=20.1
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCccce
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQ 28 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQ 28 (107)
.|++++|.++||....+....+-|++.
T Consensus 10 gv~~~as~~~Ik~ayr~l~~~~HPD~~ 36 (77)
T 1hdj_A 10 GLARGASDEEIKRAYRRQALRYHPDKN 36 (77)
T ss_dssp TCCTTCCHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 578999999999998774344556553
No 194
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=26.14 E-value=1.4e+02 Score=22.10 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=34.5
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccce--eEEecc-------CCeecCCcchhhhcCCCCCceEEE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQ--AVRLEI-------KGKILKDSDDVKSLGLKNGDMVFI 58 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQ--rL~l~~-------~Gk~L~D~ktL~~~gi~~g~tL~v 58 (107)
+++++++|+.|+-+.|.+ +-++.. .. .|.... ....|+-++++.+-+.....++++
T Consensus 100 ~~vd~~tt~~el~~~v~~-~l~L~e-~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 100 IMVDDSKTVTDMLMTICA-RIGITN-HDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEETTSBHHHHHHHHHH-HTTCSC-GGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEECCCCCHHHHHHHHHH-HcCCCC-ccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 367899999999999999 577653 33 333211 123455566676666555556665
No 195
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=25.88 E-value=6.2 Score=27.08 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=11.1
Q ss_pred EeccCCcchhhhh
Q psy12731 58 IKDLGPQIGWSTV 70 (107)
Q Consensus 58 vKDlGpQi~wrtV 70 (107)
++|+|-|+|||.-
T Consensus 117 LRdig~Q~g~rA~ 129 (148)
T 3ady_A 117 LRDIDYQAGKKAS 129 (148)
T ss_dssp HHHHHHHHGGGEE
T ss_pred HHHHHHHhcCceE
Confidence 6788999999964
No 196
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.85 E-value=33 Score=21.76 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=15.6
Q ss_pred cccCCCcHHHHHHHHHhHhCCCCcccee
Q psy12731 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQA 29 (107)
Q Consensus 2 ev~~~~TV~~LK~~I~~~~~~i~~~rQr 29 (107)
+|-|..|+.|--.+..+ .-++.++.=.
T Consensus 33 ~VrpG~tlrdAL~KaLk-~R~L~pe~C~ 59 (95)
T 2l05_A 33 PARCGVTVRDSLKKALM-MRGLIPECCA 59 (95)
T ss_dssp ECCTTCBHHHHHHHHHH-HHTCCGGGEE
T ss_pred EecCCcCHHHHHHHHHH-HcCCCHHHcE
Confidence 45566666666666665 3456555543
No 197
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.07 E-value=13 Score=19.79 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.7
Q ss_pred cCCCcHHHHHHHHHh
Q psy12731 4 SGSFTVKDIKKEVHK 18 (107)
Q Consensus 4 ~~~~TV~~LK~~I~~ 18 (107)
+..+|+++.|++|++
T Consensus 5 ee~mTLeEtkeQi~~ 19 (38)
T 2l5g_A 5 EERMSLEETKEQILK 19 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHH
Confidence 456799999999987
No 198
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=24.45 E-value=37 Score=21.89 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.9
Q ss_pred CcccCCCcHHHHHHHHHhH
Q psy12731 1 MEVSGSFTVKDIKKEVHKA 19 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~ 19 (107)
++++.++|+.++|+.+=++
T Consensus 34 l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 34 LECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEETTCBHHHHHHHHHHH
T ss_pred EEeeccccHHHHHHHHHHH
Confidence 3578899999999988774
No 199
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.06 E-value=77 Score=17.83 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHhHhCCCCc
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~ 25 (107)
...||.+||+.+.++ |++.
T Consensus 11 ~klkV~eLK~~L~~r--GL~~ 29 (55)
T 2do1_A 11 HKLKLAELKQECLAR--GLET 29 (55)
T ss_dssp TTSCHHHHHHHHHHH--TCCC
T ss_pred HHCcHHHHHHHHHHc--CCCC
Confidence 467999999999984 5543
No 200
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=23.87 E-value=1.3e+02 Score=19.57 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS 47 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~ 47 (107)
|+.+.||.++...|.+ +-++.+++ .|.+-.++....-+.++++
T Consensus 59 Vp~~~tv~qf~~~IRk-rl~L~~~~-alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 59 VPSDLTVGQFYFLIRK-RIHLRPED-ALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EETTSBHHHHHHHHHH-HTTCCTTS-CCEEEBTTBCCCTTSBHHH
T ss_pred cCCCCEeeeehhhhHh-hcCCCccc-cEEEEECCccCCccchHHH
Confidence 6789999999999999 57777765 4443234444455666544
No 201
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.56 E-value=50 Score=20.91 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=38.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCcc-ceeEE--ecc--CCeecCCcchhhh----cCCCCCceEEEe
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPD-RQAVR--LEI--KGKILKDSDDVKS----LGLKNGDMVFIK 59 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~-rQrL~--l~~--~Gk~L~D~ktL~~----~gi~~g~tL~vK 59 (107)
|+|++++|+.|+=+.+.+ +.+...+ -..|. .+. --+.++|.+.+-+ -.+.+...++|+
T Consensus 24 i~V~~~~Ta~dv~~~L~~-K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~ 90 (100)
T 1wgr_A 24 VEVAAGATARHVCEMLVQ-RAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFR 90 (100)
T ss_dssp EEECTTCCHHHHHHHHHC-SSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEEC
T ss_pred EEECCCCcHHHHHHHHHH-HcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEe
Confidence 578999999999999999 5565533 33443 222 2367888875433 345666677664
No 202
>2c3g_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; 2.0A {Bacillus halodurans} PDB: 2c3h_A*
Probab=22.96 E-value=23 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=15.7
Q ss_pred CCCCceEEEeccCCcchhhhhhhh
Q psy12731 50 LKNGDMVFIKDLGPQIGWSTVFMA 73 (107)
Q Consensus 50 i~~g~tL~vKDlGpQi~wrtVf~~ 73 (107)
+..+.+||||. |+ +|.+|.+-
T Consensus 3 ~~~~~tVyf~~--p~-~W~~v~~Y 23 (98)
T 2c3g_A 3 MASGLTIYFKK--PD-SWGTPHLY 23 (98)
T ss_dssp CCCEEEEEEEC--CT-TCCSEEEE
T ss_pred cccceEEEEEC--CC-CCCcEEEE
Confidence 45567899998 56 89987653
No 203
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=22.78 E-value=77 Score=20.54 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS 47 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~ 47 (107)
|+.+.||.++...|.+ +-++.+++ .|.+-.++....-+.++++
T Consensus 54 Vp~~~tv~qf~~~iRk-rl~l~~~~-alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 54 VPSDLTVGQFVSVLRK-RVQLEAES-ALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EETTCBHHHHHHHHHH-HHTCCTTS-CCEEEETTEECCTTSBHHH
T ss_pred cCCCCCHHHHHHHHHH-HhCCCccc-eEEEEECCcCCCccchHHH
Confidence 6789999999999999 56777754 4443235554455666654
No 204
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.59 E-value=69 Score=19.87 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=18.0
Q ss_pred CcccCCCcHHHHHHHHHhHhCCCCccceeE
Q psy12731 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAV 30 (107)
Q Consensus 1 vev~~~~TV~~LK~~I~~~~~~i~~~rQrL 30 (107)
|+|-|..|+.|--.+..+ +-++.++.=..
T Consensus 22 V~VrpG~tlrdaL~KaLk-~R~L~pe~C~V 50 (86)
T 1wxm_A 22 VTVRDGMSVYDSLDKALK-VRGLNQDCCVV 50 (86)
T ss_dssp EECCSSCBSHHHHHHHHH-TTTCCSSSEEE
T ss_pred EEecCCcCHHHHHHHHHH-HcCCCHHHeEE
Confidence 356677777776666666 45666655443
No 205
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=22.32 E-value=43 Score=21.50 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=32.4
Q ss_pred ccCCCcHHHHHHHHHhHhCCCC--ccceeEEeccCCeec-CCcchhhhcCCCCCceEEEe
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKIL-KDSDDVKSLGLKNGDMVFIK 59 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~--~~rQrL~l~~~Gk~L-~D~ktL~~~gi~~g~tL~vK 59 (107)
|..+.-|.-+--++-++ .+++ -+--.|--+.+.+-| +-..||..|||++.+.|+|-
T Consensus 39 V~GdlHIGGvmlklVEk-i~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 39 VSGDLHIGGVMLKLVEQ-MNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp ECSCCBHHHHHHHHHHH-HCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred Eeeccccchhhhhhhhh-cccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 44455666666655542 1111 111123223444544 66779999999999998874
No 206
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.92 E-value=75 Score=19.19 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhHhCCCCc
Q psy12731 5 GSFTVKDIKKEVHKAKSQLYP 25 (107)
Q Consensus 5 ~~~TV~~LK~~I~~~~~~i~~ 25 (107)
...||.+||+.+.++ |++.
T Consensus 27 ~klkVaeLK~eLk~R--GL~~ 45 (75)
T 2kvu_A 27 DDMKVAELKQELKLR--SLPV 45 (75)
T ss_dssp TTSCHHHHHHHHHHT--TCCC
T ss_pred HHCcHHHHHHHHHHc--CCCC
Confidence 367999999999983 5554
No 207
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=21.31 E-value=4.9 Score=28.79 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=22.4
Q ss_pred cCCCCCceEEEeccC-CcchhhhhhhhhhhhhHHH
Q psy12731 48 LGLKNGDMVFIKDLG-PQIGWSTVFMAEYAGPLFV 81 (107)
Q Consensus 48 ~gi~~g~tL~vKDlG-pQi~wrtVf~~EY~GPl~i 81 (107)
-+|++-..+.+-||| |.==|+ |-+|=|||+++
T Consensus 148 ~~Ik~v~~v~~~dLGMpEAi~~--leVedfGP~iV 180 (192)
T 2isb_A 148 MSIKKVKGVVWEDLGMPEAVWL--LEVERFGPCIV 180 (192)
T ss_dssp GGEEEEEEEECGGGCTTTSEEE--EEEEEEEEEEE
T ss_pred hheeEEEEEeeccCCCccEEEE--EEEEeeeeEEE
Confidence 445555567888898 787776 66777888653
No 208
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=21.26 E-value=1.7e+02 Score=18.76 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=29.2
Q ss_pred ccCCCcHHHHHHHHHhHhCCCCccceeEEeccCCeecCCcchhhh
Q psy12731 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKS 47 (107)
Q Consensus 3 v~~~~TV~~LK~~I~~~~~~i~~~rQrL~l~~~Gk~L~D~ktL~~ 47 (107)
|+.+.||.++...|.+ +-++.+++ .|.+-.++....-+.++++
T Consensus 53 Vp~~~tv~qf~~~iRk-rl~l~~~~-alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 53 VPADLTVGQFVYVIRK-RIMLPPEK-AIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EETTSBHHHHHHHHHH-HTTCCTTC-CEEEEBTTBCCCTTSBHHH
T ss_pred cCCCCCHHHHHHHHHH-HhCcCCCc-cEEEEECCccCCccchHHH
Confidence 6789999999999999 57777654 4554234443455556544
Done!