RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12731
(107 letters)
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 88
Score = 76.1 bits (187), Expect = 6e-20
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
+V T+ +IK K Q YP RQ++RL+ KGK LKD D ++ L + ++ +DL
Sbjct: 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein
AT2G30105; ubiquitin-like protein, NESG, leucine-rich
repeat, structural genomics; NMR {Arabidopsis thaliana}
Length = 85
Score = 46.5 bits (111), Expect = 2e-08
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
VS TVKD+K ++ + + P Q +L KGK+L ++ +K + +G +
Sbjct: 27 SVSPDCTVKDLKSQLQP-ITNVLPRGQ--KLIFKGKVLVETSTLKQSDVGSGAKL 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 45.7 bits (107), Expect = 4e-07
Identities = 15/77 (19%), Positives = 29/77 (37%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDL 61
+ TVK +K+++ K + +L GKIL D ++ + + V +
Sbjct: 23 RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82
Query: 62 GPQIGWSTVFMAEYAGP 78
+ G T E +
Sbjct: 83 KTKAGQGTSAPPEASPT 99
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: d.15.1.1
Length = 107
Score = 43.3 bits (101), Expect = 7e-07
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 5 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
G +++ +K+ + + PD + + L G+ LKD + G++ G V
Sbjct: 43 GGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 94
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 41.2 bits (97), Expect = 3e-06
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V+ + T++ +K+E+ + + + +PD+ L GKILKD D + G+++G V
Sbjct: 37 SVTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 88
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae}
Length = 106
Score = 41.2 bits (97), Expect = 3e-06
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++ S T+ + K ++ + + +L GK+L+DS V GLK+GD V
Sbjct: 17 DLEPSNTILETKTKLAQ-SISCEESQI--KLIYSGKVLQDSKTVSECGLKDGDQV 68
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 40.4 bits (95), Expect = 6e-06
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V+ + T++ +K+E+ + + + +PD+ L GKILKD D + G+++G V
Sbjct: 32 SVTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 83
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 40.1 bits (94), Expect = 8e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V + +V+ K+E+ K + + + D+ L GKILKD D + G+ +G V
Sbjct: 40 AVPENSSVQQFKEEISK-RFKSHTDQL--VLIFAGKILKDQDTLSQHGIHDGLTV 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 96
Score = 39.7 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++ + V+ KK++ K DR L GKIL+D D + G+ +G V
Sbjct: 32 FLAENSNVRRFKKQISK-YLHCNADRL--VLIFTGKILRDQDILSQRGILDGSTV 83
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural
genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 125
Score = 40.2 bits (94), Expect = 1e-05
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V + +V+ K+ + K + + D+ L GKILKD D + G+ +G V
Sbjct: 47 AVPENSSVQQFKEAISK-RFKSQTDQL--VLIFAGKILKDQDTLIQHGIHDGLTV 98
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed;
ubiquitin fold, structural genomics, D7WSU128E protein;
HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Length = 95
Score = 39.4 bits (92), Expect = 2e-05
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD---MVFI 58
+V T ++K+++H + L P Q ++ KG + + ++ + + +G +V
Sbjct: 32 KVPLDSTGSELKQKIHS-ITGLPPAMQ--KVMYKGL-VPEDKTLREIKVTSGAKIMVVGS 87
Query: 59 KDLGPQIG 66
GP G
Sbjct: 88 TISGPSSG 95
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Length = 90
Score = 38.0 bits (88), Expect = 4e-05
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAV-RLEIKGKILKDSDDVKSLGLKNGDMV 56
+S TV D+K+ + + + P+RQ + L++KGK ++ + +L LK +
Sbjct: 23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI 77
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats,
UBL conjugation pathway, nucleus, phosphoprotein; HET:
1PE; 2.40A {Saccharomyces cerevisiae}
Length = 101
Score = 38.1 bits (89), Expect = 6e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V+ TV K+ ++K + + Q RL GKILKD V+S +++G V
Sbjct: 43 NVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 94
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling
proteins; 1.15A {Saccharomyces cerevisiae} SCOP:
d.15.1.1 PDB: 2bwe_S
Length = 77
Score = 37.2 bits (87), Expect = 7e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V+ TV K+ ++K + + Q RL GKILKD V+S +++G V
Sbjct: 19 NVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 70
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 36.1 bits (84), Expect = 2e-04
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++ TVK +K+++ K + Q +L GKIL D +K + + V
Sbjct: 16 DIDPEETVKALKEKIESEKGKDAFPVAGQ--KLIYAGKILNDDTALKEYKIDEKNFV 70
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 36.1 bits (84), Expect = 2e-04
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ TVK +K+++ K + Q +L GKIL D ++ + + V
Sbjct: 21 RMEPDETVKVLKEKIEAEKGRDAFPVAGQ--KLIYAGKILSDDVPIRDYRIDEKNFV 75
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 37.1 bits (85), Expect = 3e-04
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAV-RLEIKGKILKDSDDVKSLGLKNGDMVFIK 59
++++ TV+ ++ E+ + K+Q+ P+RQ + L+ KGK D+ + +L LK + +
Sbjct: 19 VDLTDQDTVEVLRHEIFR-KTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77
Query: 60 DLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFY 93
+ + G +
Sbjct: 78 GSTEADIEDACSLPDNIGEVVDDFDDADEREESV 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.001
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 13 KKEVHKAKS--QLY-PDRQAVRLEIKGKI 38
K+ + K ++ +LY D A L IK +
Sbjct: 19 KQALKKLQASLKLYADD-SAPALAIKATM 46
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDD-VKSLGLKNGDMV 56
EV + TV +K ++H R +L G L D + G+ +
Sbjct: 30 EVDRTETVSSLKDKIHI-VENTPIKRM--QLYYSGIELADDYRNLNEYGITEFSEI 82
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 33.5 bits (77), Expect = 0.002
Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++ + + +K+++ + L +Q +LE +G++L+D + G+++ D
Sbjct: 22 YAINPNSFILGLKQQIE-DQQGLPKKQQ--QLEFQGQVLQDWLGLGIYGIQDSD 72
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog;
UFD1, NPL4, AAA, protein binding, transport protein;
NMR {Mus musculus}
Length = 80
Score = 33.3 bits (76), Expect = 0.002
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 2 EVSGSFTVKDIKKEVHKAKS------QLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGD 54
+ T K+V K +Y +R G+I S + L +K+GD
Sbjct: 19 TATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-----TGEITASSSKSLHLLKIKHGD 73
Query: 55 MVFI 58
++F+
Sbjct: 74 LLFL 77
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
d.15.1.1
Length = 111
Score = 33.6 bits (77), Expect = 0.003
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 4 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
S S V +K+++ + Q+ ++Q +L K LKD+ + + G+++
Sbjct: 49 SLSENVGSLKEKIA-GEIQIPANKQ--KLSGKAGFLKDNMSLAHYNVGAGEIL 98
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 33.6 bits (77), Expect = 0.003
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ V + TV +K+ +H A + P Q R G+ L D + L + +V
Sbjct: 38 LVVRSTDTVFHMKRRLH-AAEGVEPGSQ--RWFFSGRPLTDKMKFEELKIPKDYVV 90
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 33.0 bits (76), Expect = 0.003
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+V V +K+ V K + +Q RL KGK L D + +
Sbjct: 23 QVPEDELVSTLKQLVS-EKLNVPVRQQ--RLLFKGKALADGKRLSDYSIGPNS 72
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 33.0 bits (76), Expect = 0.003
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52
V VK+ K+ + A + ++Q RL +G++L+D ++ +
Sbjct: 21 IVGAQMNVKEFKEHIA-ASVSIPSEKQ--RLIYQGRVLQDDKKLQEYNVGG 68
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold,
GP78-binding, chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 32.6 bits (75), Expect = 0.004
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52
V VK+ K+ + A + ++Q RL +G++L+D ++ +
Sbjct: 33 IVGAQMNVKEFKEHIA-ASVSIPSEKQ--RLIYQGRVLQDDKKLQEYNVGG 80
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome,
ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A
2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 32.3 bits (74), Expect = 0.004
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+EV ++ +K+ V K + + D+ R+ GK L + V++ L+ +V
Sbjct: 15 VEVDSDTSILQLKEVVAK-QQGVPADQL--RVIFAGKELPNHLTVQNCDLEQQSIV 67
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; NMR {Homo sapiens}
Length = 93
Score = 32.4 bits (74), Expect = 0.006
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNG 53
EV+G TV IK V + + P+ Q + + G L+D + G++
Sbjct: 32 FEVTGQETVAQIKAHVA-SLEGIAPEDQ--VVLLAGAPLEDEATLGQCGVEAL 81
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 32.4 bits (74), Expect = 0.007
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+++ + V+ IK+ V K + P +Q RL GK + D + G
Sbjct: 27 IDIEPTDKVERIKERVE-EKEGIPPQQQ--RLIYSGKQMNDEKTAADYKILGGS 77
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B
2nvu_I* 3dqv_A 1bt0_A
Length = 76
Score = 31.8 bits (73), Expect = 0.007
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++ + V+ IK+ V + K + P +Q RL GK + D + G
Sbjct: 16 DIEPTDKVERIKERVEE-KEGIPPQQQ--RLIYSGKQMNDEKTAADYKILGGS 65
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 32.5 bits (74), Expect = 0.009
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ + V IK ++H + + +Q +L+ +G +KDS+ + + +G ++
Sbjct: 50 FTLPLTDQVSVIKVKIH-EATGMPAGKQ--KLQYEGIFIKDSNSLAYYNMASGAVI 102
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase,
deamidati bacterial effector, cell cycle-protein
binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 31.5 bits (72), Expect = 0.012
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++ + V+ IK+ V + K + P +Q RL GK + D + G
Sbjct: 16 DIEPTDKVERIKERVEE-KEGIPPQQQ--RLIYSGKQMNDEKTAADYKILGGS 65
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 31.2 bits (71), Expect = 0.013
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
EV + TV +K++V + D L +GK L+D + GLK V
Sbjct: 19 YEVRLTQTVAHLKQQVS-GLEGVQDDLF--WLTFEGKPLEDQLPLGEYGLKPLSTV 71
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural
genomics, protein structure initiative, PSI; NMR {Homo
sapiens}
Length = 125
Score = 31.9 bits (72), Expect = 0.016
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 1 MEVSGSFTVKDIKKEVHKA-----KSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
S + + DI K V+ + + +RL +G+ L + + +L L G
Sbjct: 32 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 31.8 bits (72), Expect = 0.019
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ +S S +V ++K ++ + K ++ +Q + + G L+D + S GL G V
Sbjct: 17 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV 71
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; ENDPLASMIC reticulum
stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 93
Score = 31.1 bits (70), Expect = 0.019
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 2 EVSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++V +K + + P+ Q RL GK+L D ++ L K
Sbjct: 25 SGDRGWSVGHLKAHLSRVYPERPRPEDQ--RLIYSGKLLLDHQCLRDLLPKQEK 76
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23);
'structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 95
Score = 31.1 bits (70), Expect = 0.020
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMV 56
TV +K + ++L +G++L+ + + SL + N ++
Sbjct: 23 VARPEDTVGTLKSKYFPG------QESQMKLIYQGRLLQDPARTLSSLNITNNCVI 72
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative, hydrolase; NMR {Mus musculus}
Length = 86
Score = 31.0 bits (70), Expect = 0.022
Identities = 10/60 (16%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDD---VKSLGLKNGDMVFI 58
+S +++++ ++ + + P Q + + + L SD + L +++GDM+ +
Sbjct: 16 GLSSRTRLRELQGQIAA-ITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIV 74
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 30.9 bits (70), Expect = 0.042
Identities = 4/56 (7%), Positives = 9/56 (16%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V V + Q + + + D +
Sbjct: 15 EVVEEFTPVVLATPIPEE-VQQAQTEIK--LFNKWSFEEVEVKDASLVDYVQVRQP 67
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident
ubiquitin-like domain member...; UBL domain, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 99
Score = 30.3 bits (68), Expect = 0.048
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAK-SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++TV +K + S+ Q RL G++L D +K + K +
Sbjct: 41 SCFLNWTVGKLKTHLSNVYPSKPLTKDQ--RLVYSGRLLPDHLQLKDILRKQDE 92
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_9
Length = 189
Score = 30.9 bits (69), Expect = 0.048
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS 42
+ +V D+K ++ D L G I ++
Sbjct: 15 YTLEQGTSVLDLKSQIS-QDMGFEIDMM--TLVNNGFIAPNT 53
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15,
structure, northeast structural genomics consortium,
protein structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 29.7 bits (67), Expect = 0.053
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
EV + TV +K++V + D L +GK L+D + GLK
Sbjct: 19 YEVRLTQTVAHLKQQVSG-LEGVQDDLF--WLTFEGKPLEDQLPLGEYGLKPLS 69
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 29.2 bits (66), Expect = 0.074
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+EV S T++++K ++ + + PD+Q RL GK L+D + + N
Sbjct: 18 LEVEPSDTIENVKAKIQDKE-GIPPDQQ--RLIFAGKQLEDGRTLSDYNIHNHS 68
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 28.9 bits (65), Expect = 0.13
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+EV S T++++K ++ + + PD+Q RL GK L+D + ++
Sbjct: 18 LEVEPSDTIENVKAKIQDKEG-IPPDQQ--RLIFAGKQLEDGRTLSDYNIQKWS 68
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 28.4 bits (64), Expect = 0.15
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-ILKDSDDVKSLGLKNGDMV 56
+EV T+ +K+++ + + +Q L + G IL++ V+ + +
Sbjct: 25 LEVDYRDTLLVVKQKIER-SQHIPVSKQ--TLIVDGIVILREDLTVEQCQIVPTSDI 78
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 28.6 bits (64), Expect = 0.19
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+EV S T+ ++K ++ + + PD+Q RL GK L+D + ++
Sbjct: 24 LEVESSDTIDNVKSKIQDKEG-IPPDQQ--RLIWAGKQLEDGRTLSDYNIQRES 74
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical
protein, structural genomics, NPPSFA; NMR {Arabidopsis
thaliana} SCOP: d.15.1.1
Length = 107
Score = 28.6 bits (63), Expect = 0.19
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 41 DSDDVKSLGLKNGDMVFIK 59
+ + SL L +G MV++
Sbjct: 74 PNLRISSLNLAHGSMVYLA 92
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 105
Score = 28.0 bits (62), Expect = 0.33
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI--------------KGKILKDSDDVKS 47
V + TV D+KK + + QL +R+ I K+ +D ++
Sbjct: 23 VVVQNATVLDLKKAI-QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81
Query: 48 LGLKNGDMV-FIKDL 61
G++N D V FIK L
Sbjct: 82 YGIRNRDEVSFIKKL 96
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 27.8 bits (62), Expect = 0.39
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+EV S T++++K ++ + + PD+Q RL GK L+D + ++
Sbjct: 16 LEVEPSDTIENVKAKIQDKEG-IPPDQQ--RLIFAGKQLEDGRTLSDYNIQKES 66
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex
protein TAS3; PIN, rossmann fold, SPOC, alpha-helical
hairpin, heterochrom silencing, RITS, RNAI, argonaute;
2.90A {Saccharomyces cerevisiae}
Length = 207
Score = 28.2 bits (62), Expect = 0.40
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDLGPQIGWSTVFMAEYAGPLF 80
+ ++ G ++ + L +++ D+ + QIG F
Sbjct: 93 EMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE----QIGGLPSLPFLACISDF 145
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier,
signaling protein; NMR {Trypanosoma brucei}
Length = 110
Score = 27.6 bits (61), Expect = 0.41
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDLGPQIG 66
R +VR G + ++ + LG+++ D+ ++ Q G
Sbjct: 63 SRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE----QTG 101
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 116
Score = 27.7 bits (61), Expect = 0.49
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQA-----VRLEIKGKILKDSDDVKSLGLKNGD 54
S + + DI K V+ + + Q +RL +G+ L + + +L L G
Sbjct: 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 89
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation,
inhibitor, TETR intermediate, ligase, nucleus,
phosphoprotein; HET: VMX; 2.61A {Homo sapiens}
Length = 115
Score = 27.7 bits (61), Expect = 0.55
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDLGPQIG 66
++R +G+ + D+ K LG++ D+ V+ + Q G
Sbjct: 77 PMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE----QCG 115
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.60A {Homo
sapiens} SCOP: d.15.1.1
Length = 94
Score = 27.1 bits (60), Expect = 0.64
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 7 FTVKD---IKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDL 61
F +K + K + + + +R G+ + ++D L +++ D VF +
Sbjct: 22 FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81
Query: 62 G 62
G
Sbjct: 82 G 82
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid;
1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Length = 149
Score = 27.2 bits (60), Expect = 0.79
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 64 QIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAQ 107
QI + E AGP F YR W+ + + S +
Sbjct: 101 QIRGIGLSPEEAAGPRFADARTLYRTWVLEALQECQRTISPLEH 144
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule,
structural genomics, sentrin2, NPPFSA; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 104
Score = 26.7 bits (59), Expect = 0.87
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDLGPQIG 66
+ +R G+ + ++D L +++ D VF + Q
Sbjct: 61 SMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ----QTS 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM,
ligase/protein binding complex; 1.90A {Saccharomyces
cerevisiae} SCOP: d.15.1.1
Length = 106
Score = 26.8 bits (59), Expect = 0.92
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 25 PDRQAVRLEIKGKILKDSDDVKSLGLKNGDM--VFIKDLGPQIG 66
+ ++R G ++ + L +++ D+ + QIG
Sbjct: 66 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE----QIG 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.5 bits (61), Expect = 0.99
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59
D V L + L L GD V +K
Sbjct: 35 DNSVVSL--------SQPKMDELQLFRGDTVLLK 60
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens}
SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A
3kyc_D* 3rzw_C
Length = 97
Score = 26.4 bits (58), Expect = 1.1
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++R +G+ + D+ K LG++ D++
Sbjct: 58 PMNSLRFLFEGQRIADNHTPKELGMEEEDVI 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.30A {Homo
sapiens} SCOP: d.15.1.1
Length = 91
Score = 26.3 bits (58), Expect = 1.1
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ +R G+ + ++D L +++ D +
Sbjct: 42 SMRQIRFRFDGQPINETDTPAQLEMEDEDTI 72
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport
protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A*
3hu1_A* 1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 26.7 bits (59), Expect = 1.4
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59
D V L + L L GD V +K
Sbjct: 35 DNSVVSL--------SQPKMDELQLFRGDTVLLK 60
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel,
two helices, protein transport; 1.20A {Homo sapiens}
SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Length = 72
Score = 25.9 bits (57), Expect = 1.4
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 21 SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ + +R G+ + ++D L +++ D +
Sbjct: 33 ERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 68
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 26.2 bits (57), Expect = 1.5
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKD 60
+E T ++++ ++ +++ I K L+ ++ G+ + + +
Sbjct: 34 LETRLHITGRELRSKI---AETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90
Query: 61 L----GPQIG 66
L GP G
Sbjct: 91 LKQSSGPSSG 100
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells,
cytoplasmic 2- interacting protein, ubiquitin like
homologue; NMR {Homo sapiens}
Length = 97
Score = 26.1 bits (57), Expect = 1.5
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 7 FTVK---DIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++ +K + + + + + G L + LG+++GD++
Sbjct: 41 VSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLI 93
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 26.8 bits (59), Expect = 1.7
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 2 EVSGSFTVKD-IKKEVHKAKSQLYPDRQAVRLEIKGKIL---------KDSDD-----VK 46
+ S S +++ + + A Q+ LE K + L + + +K
Sbjct: 346 QFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLK 405
Query: 47 SLGLKNGDMVFIKD 60
LGL +G + + D
Sbjct: 406 ELGLVDGQELAVAD 419
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division,
nuclear protein, ubiquitin-like modifier, UBL
conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1
PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B
3uip_B* 1tgz_B* 2bf8_B
Length = 79
Score = 25.5 bits (56), Expect = 1.8
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++R +G+ + D+ K LG++ D++
Sbjct: 40 PMNSLRFLFEGQRIADNHTPKELGMEEEDVI 70
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens}
SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A
2k1f_A
Length = 93
Score = 25.6 bits (56), Expect = 1.9
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ +R G+ + ++D L +++ D +
Sbjct: 54 SMRQIRFRFDGQPINETDTPAQLEMEDEDTI 84
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil,
cytoplasm, methylation, nucleus, transcription; 1.00A
{Mus musculus} PDB: 3a4s_C 3rd2_A
Length = 79
Score = 25.2 bits (55), Expect = 2.2
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 21 SQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ + G L + LGL++GD++
Sbjct: 40 EAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLI 75
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 25.5 bits (57), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 44 DVKSLGLKNGDMVFIKDLG-PQIGWSTV 70
VK L L G++V ++ P +GW+ V
Sbjct: 99 GVKGLSLIEGNVVKLRSRRLPHMGWNEV 126
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2);
beta-barrel, structural genomics, PSI-2, protein
structure initiative; NMR {Archaeoglobus fulgidus}
Length = 146
Score = 25.3 bits (56), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 43 DDVKSLGLKNGDMVFIK 59
+D +LGL+ GD V +K
Sbjct: 60 EDWNALGLQEGDRVKVK 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP,
oligomerization, ubiquitin insertion, hydrolase binding;
2.17A {Bacillus amyloliquefaciens}
Length = 189
Score = 25.3 bits (55), Expect = 3.9
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+EV S T++++K ++ K + PD+Q RL GK L+D + ++ +
Sbjct: 120 LEVEPSDTIENVKAKIQD-KEGIPPDQQ--RLIFAGKQLEDGRTLSDYNIQKESTL 172
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural
genomics, PSI-biology, Pro structure initiative; NMR
{Homo sapiens}
Length = 95
Score = 25.0 bits (54), Expect = 4.0
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ L L + ++L L D++
Sbjct: 57 SPSRILLLFGETELSPTATPRTLKLGVADII 87
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 25.2 bits (56), Expect = 4.4
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 9 VKDIKKEVHKAKSQLYPDRQAVRL 32
V ++ + ++ ++Y D L
Sbjct: 38 VDEVFRRLNSDALRIYYDSPDEEL 61
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 1.74A {Exiguobacterium sibiricum} PDB:
3mqu_A 3nl9_A
Length = 171
Score = 25.1 bits (54), Expect = 4.5
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 3 VSGSFTVKDIKKEVHKAK-SQLYPDRQAVRLEIKGKILK 40
V + + V +A ++L PD Q + E K++K
Sbjct: 110 VEAGLEPGPLFEIVQQANMAKLGPDGQPIFRESDQKVMK 148
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 25.3 bits (56), Expect = 5.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 43 DDVKSLGLKNGDMVFIK 59
++ K LGLK GD V +
Sbjct: 654 EEAKRLGLKEGDYVMLV 670
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 25.3 bits (55), Expect = 5.3
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 43 DDVKSLGLKNGDMVFI 58
D ++ G+KNGD++
Sbjct: 777 IDAEARGIKNGDLIRA 792
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 25.2 bits (55), Expect = 5.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 43 DDVKSLGLKNGDMV 56
+ G+ NGD V
Sbjct: 925 TLAAAKGINNGDRV 938
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase;
HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A*
1ogy_A* 2nya_A*
Length = 802
Score = 25.1 bits (55), Expect = 6.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 43 DDVKSLGLKNGDMV 56
+D K+LGL+ G V
Sbjct: 725 EDAKALGLRRGVEV 738
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II,
histidinol-phosphate aminotrans structural genomics,
protein structure initiative; 1.61A {Geobacter
metallireducens gs-15}
Length = 360
Score = 24.8 bits (55), Expect = 7.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 9 VKDIKKEVHKAKSQL--YPDRQAVRL 32
VK I +E+ + L YP + +L
Sbjct: 45 VKAILEELGPDGAALRIYPSASSQKL 70
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 24.9 bits (54), Expect = 7.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 43 DDVKSLGLKNGDMV 56
+ G+KNGD V
Sbjct: 887 ELATLRGIKNGDKV 900
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 24.7 bits (54), Expect = 7.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 43 DDVKSLGLKNGDMV 56
DD K L + GD+V
Sbjct: 733 DDCKQLDVTGGDIV 746
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 24.9 bits (54), Expect = 7.7
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 29 AVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQI----GWSTVFMAEYA 76
A+RLE+ G + D+ LG+ +G I D QI ++ A
Sbjct: 397 ALRLELFGCRVTDAPCSNMLGMLSG---LIAD--SQISASSTQEYLWSPSAA 443
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 24.8 bits (55), Expect = 7.8
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 40 KDSDDVKSLGLKNG-DMVF 57
KD D+ + G+ G + +
Sbjct: 208 KDKHDILNFGIPMGCNFIA 226
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 24.8 bits (55), Expect = 7.9
Identities = 4/19 (21%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 40 KDSDDVKSLGLKNG-DMVF 57
KD +D+ + + G + +
Sbjct: 217 KDKNDILNFAIPMGCNFIA 235
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 24.6 bits (54), Expect = 8.1
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 40 KDSDDVKSLGLKNG-DMVF 57
KD D+ LK D +
Sbjct: 224 KDRHDIVDFALKYNLDFIA 242
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 8.9
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 28/96 (29%)
Query: 14 KEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTVFMA 73
++H ++L + ++ K +++K+ + + + + S +F A
Sbjct: 99 NDIHALAAKLLQENDTTLVKTK-ELIKNYITARIMAKRPF---------DKKSNSALFRA 148
Query: 74 EYAGPLFVYLIF----------------Y--YRPWI 91
G + IF Y Y +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 24.6 bits (53), Expect = 9.1
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 12 IKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIKDLGPQIGWSTV 70
I+K++ + + ++ + D V + NG +V I + +
Sbjct: 272 IRKKIFETDKDFIVGEIIVMQEPLFKTYKIDGKPVSEIIFNNGQLVRIIEAEYTSTFVKA 331
Query: 71 FMAEYAGPLFVY 82
+ +
Sbjct: 332 RGVPGEYLIRHW 343
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 24.5 bits (54), Expect = 9.1
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 9 VKDIKKEVHKAKSQLYPDRQAVRL 32
++ + + YP + L
Sbjct: 49 RSELAARLGEVALNRYPVPSSEAL 72
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 24.4 bits (54), Expect = 9.2
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 42 SDDVKSLGLKNGDMVFIKDLG-PQIGWSTV 70
+ V+ LGL G++ + PQ+GW+ +
Sbjct: 95 APGVRGLGLVPGEVRRFRAGRVPQMGWNAL 124
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation,
UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Length = 127
Score = 24.2 bits (52), Expect = 9.4
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 16 VHKAKSQL-YPDRQAVRLEIKGKILKDSDD-------VKSLGLKNGDMVFIKD 60
V + + YP ++ ++L D D + + L NG ++ D
Sbjct: 26 VVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,635,412
Number of extensions: 87936
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 100
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)