RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12731
(107 letters)
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 37.7 bits (87), Expect = 2e-05
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQA-VRLEIKGKILKDSDDVKSLGLKNGD---MVF 57
+S TV D+K+ + + + P+RQ + L++KGK ++ + +L LK M+
Sbjct: 23 TLSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81
Query: 58 IKDLGPQIG 66
++ GP G
Sbjct: 82 TRESGPSSG 90
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 37.0 bits (86), Expect = 3e-05
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ V+ TV K+ ++K + + Q RL GKILKD V+S +++G V
Sbjct: 15 VNVAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 67
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 36.8 bits (85), Expect = 4e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ +S S +V ++K ++ + K ++ +Q + + G L+D + S GL G V
Sbjct: 15 VSLSSSMSVSELKAQITQ-KIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV 69
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 37.2 bits (86), Expect = 4e-05
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-----DSDDVKSL---GLKN 52
++ S TV+ +K + + ++ L + + +D++ L ++N
Sbjct: 27 KQLPDSMTVQKVKGLLSR-LLKVPVSEL--LLSYESSKMPGREIELENDLQPLQFYSVEN 83
Query: 53 GDMVFIKDLGPQIG 66
GD + ++ GP G
Sbjct: 84 GDCLLVRWSGPSSG 97
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 35.2 bits (81), Expect = 2e-04
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+ + V IK ++H+ + + +Q +L+ +G +KDS+ + + NG ++
Sbjct: 26 FTLPLTDQVSVIKVKIHE-ATGMPAGKQ--KLQYEGIFIKDSNSLAYYNMANGAVI 78
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 34.8 bits (80), Expect = 2e-04
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
+ + TVK +K+++ K + +L GKIL D ++ + + V +
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVV 74
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.2 bits (81), Expect = 2e-04
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 2 EVSGSFTVKDIKKEVH-KAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
++V +K + + P+ Q RL GK+L D ++ L K
Sbjct: 25 SGDRGWSVGHLKAHLSRVYPERPRPEDQ--RLIYSGKLLLDHQCLRDLLPKQEK 76
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 35.0 bits (80), Expect = 3e-04
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+++ TVK +K+++ K + +L GKIL D +K + + V
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 70
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 34.8 bits (80), Expect = 3e-04
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 3 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
G +++ +K+ + + PD + + L G+ LKD + G++ G V
Sbjct: 34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 87
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 34.1 bits (78), Expect = 4e-04
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDVKSLGLKNGDMV 56
+ S V+D+ + V + Q +L KGK LK + +LG+++G V
Sbjct: 20 QQGSSEPVVQDLAQVVE-EVIGVPQSFQ--KLIFKGKSLKEMETPLSALGIQDGCRV 73
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 32.3 bits (73), Expect = 0.003
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSD-DVKSLGLKNGDMVFI 58
++V+ F + + + +S + + ++ ++L D + S GLK+GDMV +
Sbjct: 26 LQVNPDFELSNFRVLCE-LESGVPAEEA--QIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 31.7 bits (72), Expect = 0.003
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKN 52
V VK+ K+ + + ++Q RL +G++L+D ++ +
Sbjct: 15 FIVGAQMNVKEFKEHIAA-SVSIPSEKQ--RLIYQGRVLQDDKKLQEYNVGG 63
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 30.7 bits (69), Expect = 0.010
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 1 MEVSGSFTVKDIKKEV------HKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGD 54
+ TV +K+ V K +L GK+L++S VK +
Sbjct: 23 KAFPDATTVSALKETVISEWPREKENGPKTVKEV--KLISAGKVLENSKTVKDYRSPVSN 80
Query: 55 M 55
+
Sbjct: 81 L 81
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 30.7 bits (69), Expect = 0.011
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFI 58
+E T ++++ K +++ I K L+ ++ G+ + +
Sbjct: 34 LETRLHITGRELRS---KIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMV 88
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 29.3 bits (65), Expect = 0.044
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQ-------------AVRLEIKGKILKDSDD-VK 46
+ V + TV D+KK + + QL +R+ L G+ L + ++
Sbjct: 22 VVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLR 80
Query: 47 SLGLKNGDMV 56
G++N D V
Sbjct: 81 DYGIRNRDEV 90
>d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 167
Score = 29.3 bits (65), Expect = 0.058
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 27 RQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK-DLGPQIGWSTVFMAEYAGPLFVYLIF 85
R+ + + + D K+ G+K+GD+V + D G + + V G + ++
Sbjct: 36 RETYAVNGREPVYISPVDAKARGIKDGDIVRVFNDRGQLLAGAVVSDNFPKGIVRIHEGA 95
Query: 86 YYRPWIFYGSE 96
+Y P GS
Sbjct: 96 WYGPVGKDGST 106
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 28.0 bits (62), Expect = 0.097
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MEVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
++ + T+ D+KK + ++ ++ L+ I KD + + +G +
Sbjct: 43 VKCNTDDTIGDLKKLIAA-QTGTRWNKI--VLKKWYTIFKDHVSLGDYEIHDGMNL 95
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 27.0 bits (59), Expect = 0.39
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 45 VKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLI 84
+K + +K + LG G + +A+ A VY I
Sbjct: 67 LKVMPIKRDSKIL--YLGASAGTTPSHVADIADKGIVYAI 104
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 25.6 bits (56), Expect = 0.54
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
+VS T++++++ V A + P+ Q RL +GK L++ + + D++
Sbjct: 18 DVSRKATIEELRERVW-ALFDVRPECQ--RLFYRGKQLENGYTLFDYDVGLNDII 69
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Escherichia coli [TaxId: 562]}
Length = 209
Score = 26.3 bits (57), Expect = 0.62
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 8 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDV 45
+ DI V + +YP + G++ +
Sbjct: 161 SEDDITARVQTQEHAIYP--LVISWFADGRLKMHENAA 196
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal
domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.9 bits (57), Expect = 0.63
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 26 DRQAVRLEIKGKILKDSDDVKSLGLKNGDMVFIK 59
D V L + L L GD V +K
Sbjct: 15 DNSVVSL--------SQPKMDELQLFRGDTVLLK 40
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.1 bits (57), Expect = 0.64
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 2 EVSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
V + +V+ K+ + K + + D+ + GKILKD D + G+ +G V
Sbjct: 47 AVPENSSVQQFKEAISK-RFKSQTDQLVLI--FAGKILKDQDTLIQHGIHDGLTV 98
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.1 bits (55), Expect = 0.93
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 7 FTVK---DIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDVKSLGLKNGDMV 56
F +K + K + + + +R G+ + ++D L +++ D +
Sbjct: 16 FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTI 68
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 25.4 bits (55), Expect = 1.8
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 1 MEVSGSFTVKD-IKKEVHKAKSQL-YPDRQAVRLEIKGKIL---------KDSDD----- 44
++ S S +++ + + A Q+ P A LE K + L + +
Sbjct: 342 IQFSPSAKLQEVLDYLTNSASLQMKSPAITAT-LEGKNRTLYLQSVTSIEERTRPNLSKT 400
Query: 45 VKSLGLKNGDMVFIKD 60
+K LGL +G + + D
Sbjct: 401 LKELGLVDGQELAVAD 416
>d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 147
Score = 24.3 bits (52), Expect = 3.0
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 38 ILKDSDDVKSLGLKNGDMVFI 58
+ +S D ++ G+KNGD++
Sbjct: 44 MRVNSIDAEARGIKNGDLIRA 64
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 23.6 bits (51), Expect = 3.7
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 35 KGKILKDSDDVKSLGLKNGDMVFIK 59
++ D + L + GD+V I+
Sbjct: 21 MSRVRLDESSRRLLDAEIGDVVEIE 45
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 126
Score = 23.9 bits (52), Expect = 4.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 26 DRQAVRLEIKGKILKDSDDVK 46
RL I G +++ +D K
Sbjct: 73 QDFDNRLRILGTVIEGPEDTK 93
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 94
Score = 23.3 bits (50), Expect = 4.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 41 DSDDVKSLGLKNGDMVFIK 59
+ + SL L +G MV++
Sbjct: 67 PNLRISSLNLAHGSMVYLA 85
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize
(Zea mays) [TaxId: 4577]}
Length = 289
Score = 24.1 bits (52), Expect = 4.9
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 56 VFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAA 98
VF+ +T F + V L Y EA
Sbjct: 46 VFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEAT 88
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD
{Bacillus subtilis [TaxId: 1423]}
Length = 270
Score = 23.8 bits (51), Expect = 5.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 42 SDDVKSLGLKNGDMVFI 58
++D+K+LGLK G V +
Sbjct: 18 TEDLKALGLKKGMTVLV 34
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk
{Methanococcus jannaschii [TaxId: 2190]}
Length = 131
Score = 22.7 bits (49), Expect = 9.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 46 KSLGLKNGDMVFIK 59
+ LK+GD++ I
Sbjct: 115 EQFNLKDGDVIKIL 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 405,521
Number of extensions: 17265
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 39
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)