Query psy12734
Match_columns 217
No_of_seqs 115 out of 1297
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3595|consensus 99.9 6.6E-23 1.4E-27 201.3 14.3 193 2-197 969-1165(1395)
2 PF12781 AAA_9: ATP-binding dy 99.8 8.5E-22 1.8E-26 159.6 2.9 91 106-197 1-98 (228)
3 PF12777 MT: Microtubule-bindi 99.7 1.6E-17 3.5E-22 142.6 9.5 89 2-90 256-344 (344)
4 COG5245 DYN1 Dynein, heavy cha 99.2 2.1E-12 4.6E-17 123.5 0.8 190 2-195 2346-2543(3164)
5 PF12781 AAA_9: ATP-binding dy 98.9 3.1E-10 6.7E-15 92.2 1.1 47 169-216 15-61 (228)
6 KOG3595|consensus 98.8 3.9E-08 8.5E-13 97.9 11.1 185 3-216 921-1132(1395)
7 PF12777 MT: Microtubule-bindi 95.9 0.0039 8.5E-08 53.8 1.8 91 2-94 207-304 (344)
8 PF15188 CCDC-167: Coiled-coil 89.5 5 0.00011 27.4 8.7 52 7-58 3-64 (85)
9 PF06005 DUF904: Protein of un 88.8 5 0.00011 26.4 9.3 53 4-56 13-65 (72)
10 COG4026 Uncharacterized protei 84.8 6.7 0.00014 31.7 7.6 43 16-58 135-177 (290)
11 COG3074 Uncharacterized protei 83.0 8 0.00017 25.2 6.0 16 31-46 54-69 (79)
12 PF05377 FlaC_arch: Flagella a 81.8 9.4 0.0002 23.7 5.9 37 19-55 3-39 (55)
13 COG5245 DYN1 Dynein, heavy cha 81.2 2.4 5.3E-05 43.6 4.7 62 9-70 2311-2372(3164)
14 PF10779 XhlA: Haemolysin XhlA 80.3 14 0.00029 24.1 8.7 52 7-58 4-55 (71)
15 COG4026 Uncharacterized protei 80.2 9.4 0.0002 30.9 6.9 35 4-38 144-178 (290)
16 PF04949 Transcrip_act: Transc 80.1 18 0.0004 27.2 8.0 54 7-60 82-135 (159)
17 PF06810 Phage_GP20: Phage min 79.9 24 0.00053 26.8 9.7 44 4-47 22-68 (155)
18 PRK02119 hypothetical protein; 79.7 15 0.00032 24.2 7.1 47 10-56 3-49 (73)
19 PF11932 DUF3450: Protein of u 78.8 35 0.00075 28.0 11.3 95 7-102 54-152 (251)
20 PF12718 Tropomyosin_1: Tropom 77.5 21 0.00046 26.7 7.9 29 26-54 111-139 (143)
21 cd07666 BAR_SNX7 The Bin/Amphi 77.2 19 0.00042 29.6 8.2 65 9-90 177-241 (243)
22 PF12325 TMF_TATA_bd: TATA ele 75.8 28 0.0006 25.4 7.8 13 42-54 73-85 (120)
23 PF10224 DUF2205: Predicted co 75.3 22 0.00048 23.9 7.3 39 5-43 19-57 (80)
24 PF05278 PEARLI-4: Arabidopsis 75.2 47 0.001 27.7 9.9 41 15-55 192-232 (269)
25 KOG1962|consensus 74.6 18 0.00039 29.1 7.2 38 18-55 153-190 (216)
26 PF04102 SlyX: SlyX; InterPro 74.5 21 0.00045 23.2 7.5 43 14-56 2-44 (69)
27 COG3883 Uncharacterized protei 74.2 50 0.0011 27.5 10.9 54 3-56 39-92 (265)
28 PF02609 Exonuc_VII_S: Exonucl 73.8 18 0.00038 22.1 6.7 50 4-53 1-50 (53)
29 PRK10884 SH3 domain-containing 73.5 32 0.00069 27.5 8.4 32 22-53 124-155 (206)
30 PF05278 PEARLI-4: Arabidopsis 72.6 21 0.00045 29.8 7.2 57 4-60 188-244 (269)
31 PRK09039 hypothetical protein; 72.3 30 0.00064 30.0 8.6 55 3-57 131-185 (343)
32 PRK14064 exodeoxyribonuclease 71.4 21 0.00047 23.6 5.9 55 3-57 7-61 (75)
33 TIGR01280 xseB exodeoxyribonuc 71.4 22 0.00047 23.0 5.8 54 3-56 2-55 (67)
34 PRK00846 hypothetical protein; 70.8 29 0.00062 23.2 7.7 48 11-58 8-55 (77)
35 PRK10698 phage shock protein P 70.4 56 0.0012 26.4 9.6 61 6-66 89-149 (222)
36 COG3074 Uncharacterized protei 70.2 27 0.00059 22.7 7.2 33 20-52 8-40 (79)
37 PF10234 Cluap1: Clusterin-ass 69.7 62 0.0014 27.0 9.5 45 12-56 193-237 (267)
38 PRK00977 exodeoxyribonuclease 69.6 23 0.00049 23.8 5.7 54 3-56 11-64 (80)
39 PF00261 Tropomyosin: Tropomyo 69.6 54 0.0012 26.7 9.1 47 9-55 176-222 (237)
40 PRK14063 exodeoxyribonuclease 69.5 25 0.00054 23.4 5.9 54 3-56 6-59 (76)
41 PRK14066 exodeoxyribonuclease 69.5 25 0.00055 23.3 5.9 54 3-56 5-58 (75)
42 PF11594 Med28: Mediator compl 69.5 25 0.00054 25.0 6.1 43 11-53 37-79 (106)
43 KOG0804|consensus 69.2 33 0.00071 30.7 8.0 49 3-51 355-403 (493)
44 PF00261 Tropomyosin: Tropomyo 69.2 36 0.00078 27.7 8.0 51 3-53 114-164 (237)
45 PRK00295 hypothetical protein; 68.9 29 0.00062 22.5 7.4 43 14-56 3-45 (68)
46 PF07544 Med9: RNA polymerase 67.2 27 0.00059 23.5 5.8 45 11-55 23-70 (83)
47 PF08317 Spc7: Spc7 kinetochor 67.1 81 0.0017 27.0 10.4 46 14-59 214-259 (325)
48 PRK11637 AmiB activator; Provi 65.7 73 0.0016 28.3 9.9 43 11-53 77-119 (428)
49 KOG2264|consensus 65.4 42 0.0009 31.2 8.1 51 6-56 97-147 (907)
50 PRK04406 hypothetical protein; 64.7 38 0.00083 22.4 7.9 44 13-56 8-51 (75)
51 PRK14068 exodeoxyribonuclease 64.2 37 0.0008 22.6 5.9 54 3-56 7-60 (76)
52 COG1722 XseB Exonuclease VII s 63.6 43 0.00093 22.6 6.9 55 3-57 11-65 (81)
53 PRK11637 AmiB activator; Provi 63.4 54 0.0012 29.1 8.7 48 6-53 79-126 (428)
54 PRK10884 SH3 domain-containing 62.4 79 0.0017 25.3 9.4 14 13-26 97-110 (206)
55 PRK15422 septal ring assembly 62.1 45 0.00097 22.3 6.3 8 37-44 60-67 (79)
56 PRK02793 phi X174 lysis protei 61.7 43 0.00093 22.0 7.5 43 14-56 6-48 (72)
57 PF04012 PspA_IM30: PspA/IM30 61.4 82 0.0018 25.1 9.6 55 6-60 88-142 (221)
58 PF11932 DUF3450: Protein of u 61.1 69 0.0015 26.2 8.3 50 10-59 43-92 (251)
59 PRK00736 hypothetical protein; 60.6 43 0.00094 21.7 7.4 42 15-56 4-45 (68)
60 KOG0804|consensus 60.6 71 0.0015 28.7 8.5 39 17-55 390-428 (493)
61 PF05377 FlaC_arch: Flagella a 60.3 39 0.00084 21.0 6.7 45 11-55 2-46 (55)
62 KOG4196|consensus 60.0 67 0.0015 23.7 7.5 42 7-48 72-113 (135)
63 PRK04325 hypothetical protein; 60.0 47 0.001 21.9 7.7 44 13-56 6-49 (74)
64 PF08614 ATG16: Autophagy prot 59.6 84 0.0018 24.6 10.9 54 6-59 99-152 (194)
65 PRK09343 prefoldin subunit bet 59.2 59 0.0013 23.5 6.8 39 18-56 73-111 (121)
66 PF04048 Sec8_exocyst: Sec8 ex 58.4 67 0.0014 23.9 7.2 39 3-41 73-111 (142)
67 KOG0980|consensus 58.2 1.6E+02 0.0035 28.9 10.9 54 3-56 446-499 (980)
68 PF07889 DUF1664: Protein of u 57.9 73 0.0016 23.4 8.1 39 11-49 63-101 (126)
69 PF06428 Sec2p: GDP/GTP exchan 57.8 64 0.0014 22.7 6.9 49 5-53 11-60 (100)
70 PRK14069 exodeoxyribonuclease 57.7 50 0.0011 23.0 5.8 52 3-54 9-60 (95)
71 PF10146 zf-C4H2: Zinc finger- 57.0 1.1E+02 0.0023 25.0 9.1 39 16-54 25-63 (230)
72 PF09728 Taxilin: Myosin-like 56.6 95 0.0021 26.5 8.6 51 6-56 248-298 (309)
73 PF05384 DegS: Sensor protein 56.4 89 0.0019 23.9 8.1 13 54-66 125-137 (159)
74 PF10498 IFT57: Intra-flagella 56.4 79 0.0017 27.6 8.2 55 6-60 238-296 (359)
75 PF09730 BicD: Microtubule-ass 55.4 77 0.0017 30.4 8.4 52 2-56 359-410 (717)
76 COG3883 Uncharacterized protei 55.0 77 0.0017 26.4 7.4 76 5-88 34-109 (265)
77 PF15030 DUF4527: Protein of u 54.3 1.1E+02 0.0024 25.2 8.0 42 29-70 92-133 (277)
78 PF09325 Vps5: Vps5 C terminal 54.0 1.1E+02 0.0024 24.3 8.3 23 34-56 167-189 (236)
79 PF08826 DMPK_coil: DMPK coile 53.7 56 0.0012 20.8 7.6 45 5-49 7-58 (61)
80 PRK13169 DNA replication intia 53.4 81 0.0018 22.6 8.4 52 5-56 4-55 (110)
81 PF01920 Prefoldin_2: Prefoldi 53.3 49 0.0011 22.7 5.4 25 29-53 75-99 (106)
82 PF12999 PRKCSH-like: Glucosid 53.2 1.1E+02 0.0023 23.9 8.4 46 10-55 126-171 (176)
83 PF11544 Spc42p: Spindle pole 53.2 65 0.0014 21.4 7.8 48 7-54 3-50 (76)
84 PRK13729 conjugal transfer pil 53.0 70 0.0015 29.0 7.4 9 46-54 106-114 (475)
85 PRK14067 exodeoxyribonuclease 52.8 68 0.0015 21.5 5.8 52 3-54 8-59 (80)
86 PF14131 DUF4298: Domain of un 52.6 45 0.00098 22.8 5.0 33 18-50 2-34 (90)
87 COG2900 SlyX Uncharacterized p 52.3 65 0.0014 21.2 7.7 46 12-57 4-49 (72)
88 PRK02119 hypothetical protein; 52.0 66 0.0014 21.1 8.4 55 2-56 2-56 (73)
89 PRK04325 hypothetical protein; 51.5 68 0.0015 21.1 8.3 53 4-56 4-56 (74)
90 PF14818 DUF4482: Domain of un 51.5 33 0.00072 25.7 4.4 32 30-61 20-51 (141)
91 PF14257 DUF4349: Domain of un 51.2 90 0.002 25.6 7.5 26 8-33 131-156 (262)
92 PF04136 Sec34: Sec34-like fam 50.5 1.1E+02 0.0024 23.2 10.3 55 3-57 1-55 (157)
93 KOG4657|consensus 50.4 1.4E+02 0.003 24.3 8.3 52 5-56 54-105 (246)
94 TIGR02977 phageshock_pspA phag 50.4 1.3E+02 0.0028 24.1 10.1 59 7-65 90-148 (219)
95 PF04420 CHD5: CHD5-like prote 50.2 67 0.0015 24.5 6.1 7 37-43 63-69 (161)
96 PF11471 Sugarporin_N: Maltopo 50.2 52 0.0011 20.8 4.5 26 8-33 31-56 (60)
97 PF04102 SlyX: SlyX; InterPro 50.0 68 0.0015 20.7 7.3 50 8-57 3-52 (69)
98 PF08317 Spc7: Spc7 kinetochor 49.5 1.1E+02 0.0024 26.1 8.0 60 3-62 185-248 (325)
99 PRK15422 septal ring assembly 49.5 77 0.0017 21.2 7.6 37 19-55 7-43 (79)
100 PF04880 NUDE_C: NUDE protein, 49.5 26 0.00057 27.0 3.7 18 3-20 8-25 (166)
101 KOG1003|consensus 49.4 1.3E+02 0.0029 23.9 8.6 49 9-57 144-192 (205)
102 TIGR02894 DNA_bind_RsfA transc 49.2 1.2E+02 0.0026 23.3 7.8 22 37-58 111-132 (161)
103 PRK11020 hypothetical protein; 48.9 99 0.0021 22.3 9.3 46 8-53 4-54 (118)
104 PF02388 FemAB: FemAB family; 48.0 8 0.00017 34.2 0.8 62 7-68 247-311 (406)
105 PF11559 ADIP: Afadin- and alp 48.0 1.1E+02 0.0025 22.7 8.5 48 7-54 57-104 (151)
106 PF06810 Phage_GP20: Phage min 47.6 1.2E+02 0.0027 23.0 7.9 51 4-54 15-68 (155)
107 PRK00888 ftsB cell division pr 47.2 1E+02 0.0022 21.8 6.5 35 10-44 28-62 (105)
108 PF10805 DUF2730: Protein of u 46.9 1E+02 0.0022 21.8 7.6 54 9-67 35-88 (106)
109 COG1579 Zn-ribbon protein, pos 46.6 1.6E+02 0.0036 24.1 9.5 54 3-56 53-115 (239)
110 PF04977 DivIC: Septum formati 46.5 78 0.0017 20.4 6.0 33 10-42 18-50 (80)
111 PF06156 DUF972: Protein of un 46.4 1.1E+02 0.0023 21.8 8.2 51 6-56 5-55 (107)
112 TIGR03185 DNA_S_dndD DNA sulfu 45.5 2.7E+02 0.0058 26.3 10.8 13 136-148 572-585 (650)
113 KOG3647|consensus 45.5 1.8E+02 0.004 24.4 9.0 40 17-56 120-159 (338)
114 cd07637 BAR_ACAP3 The Bin/Amph 45.4 1.1E+02 0.0024 24.3 6.8 62 10-71 3-68 (200)
115 PF09789 DUF2353: Uncharacteri 45.0 1.7E+02 0.0036 25.2 8.1 55 4-58 128-182 (319)
116 TIGR02338 gimC_beta prefoldin, 44.9 1.1E+02 0.0024 21.6 6.8 36 20-55 71-106 (110)
117 PF06419 COG6: Conserved oligo 44.9 2.7E+02 0.0058 26.2 10.3 65 3-67 39-103 (618)
118 cd07639 BAR_ACAP1 The Bin/Amph 44.1 1.6E+02 0.0035 23.4 7.7 73 10-82 3-81 (200)
119 cd00632 Prefoldin_beta Prefold 44.1 1E+02 0.0022 21.5 5.9 24 29-52 76-99 (105)
120 KOG0977|consensus 44.1 1.6E+02 0.0035 27.3 8.4 52 5-56 109-160 (546)
121 PF08614 ATG16: Autophagy prot 43.9 1.1E+02 0.0024 24.0 6.7 11 78-89 174-184 (194)
122 PF13094 CENP-Q: CENP-Q, a CEN 43.5 1.4E+02 0.0031 22.5 8.4 51 3-53 21-71 (160)
123 TIGR02894 DNA_bind_RsfA transc 43.5 1.5E+02 0.0032 22.8 8.3 25 32-56 120-144 (161)
124 PF13874 Nup54: Nucleoporin co 43.2 1.4E+02 0.0029 22.2 8.2 59 3-61 31-89 (141)
125 PF10224 DUF2205: Predicted co 42.9 1E+02 0.0022 20.7 8.3 58 9-71 16-73 (80)
126 COG0216 PrfA Protein chain rel 42.8 1.8E+02 0.004 25.2 8.0 54 3-56 34-102 (363)
127 KOG1003|consensus 42.7 1.7E+02 0.0037 23.3 9.7 54 3-56 82-135 (205)
128 KOG4674|consensus 42.7 1E+02 0.0023 32.7 7.6 51 2-52 1250-1300(1822)
129 PF12718 Tropomyosin_1: Tropom 42.7 1.4E+02 0.0031 22.3 9.8 42 9-50 14-55 (143)
130 smart00787 Spc7 Spc7 kinetocho 42.3 1.6E+02 0.0035 25.2 7.8 33 24-56 205-237 (312)
131 PRK00846 hypothetical protein; 41.9 1E+02 0.0023 20.5 8.1 52 6-57 10-61 (77)
132 COG1382 GimC Prefoldin, chaper 41.8 1.4E+02 0.0029 21.8 7.0 23 3-25 21-43 (119)
133 KOG0980|consensus 41.2 1.9E+02 0.0042 28.4 8.6 57 3-59 488-544 (980)
134 PRK13729 conjugal transfer pil 41.0 85 0.0018 28.5 6.0 45 9-53 76-120 (475)
135 PF04201 TPD52: Tumour protein 40.7 1.7E+02 0.0036 22.5 8.4 37 9-45 29-65 (162)
136 PF13815 Dzip-like_N: Iguana/D 40.7 1.4E+02 0.0029 21.5 6.6 41 12-52 76-116 (118)
137 PF04111 APG6: Autophagy prote 40.6 2.3E+02 0.005 24.2 10.6 9 94-102 143-151 (314)
138 PF03962 Mnd1: Mnd1 family; I 39.8 1.8E+02 0.004 22.8 7.3 16 6-21 80-95 (188)
139 PF08372 PRT_C: Plant phosphor 39.8 1E+02 0.0022 23.6 5.5 65 9-73 52-116 (156)
140 KOG2391|consensus 39.7 2.1E+02 0.0046 24.8 7.9 10 124-133 311-320 (365)
141 PF04129 Vps52: Vps52 / Sac2 f 39.7 2.7E+02 0.0059 25.5 9.3 54 3-56 8-61 (508)
142 PF10473 CENP-F_leu_zip: Leuci 39.6 1.6E+02 0.0035 22.0 9.8 27 16-42 59-85 (140)
143 PRK14065 exodeoxyribonuclease 39.4 1.2E+02 0.0026 20.6 5.7 37 20-56 26-62 (86)
144 PF10481 CENP-F_N: Cenp-F N-te 37.6 2.3E+02 0.005 23.8 7.6 59 13-71 43-101 (307)
145 PF08580 KAR9: Yeast cortical 37.3 3E+02 0.0066 26.4 9.4 75 3-94 200-278 (683)
146 KOG4571|consensus 36.9 2.5E+02 0.0053 23.8 7.7 37 20-56 245-281 (294)
147 PRK02793 phi X174 lysis protei 36.5 1.2E+02 0.0027 19.8 8.1 50 7-56 6-55 (72)
148 KOG4343|consensus 36.2 2.3E+02 0.0051 26.2 7.9 47 7-53 293-339 (655)
149 KOG0996|consensus 35.6 5.1E+02 0.011 26.6 12.6 58 133-194 636-698 (1293)
150 KOG0976|consensus 33.9 2.4E+02 0.0052 27.7 7.9 52 5-56 354-405 (1265)
151 KOG3564|consensus 33.9 2.2E+02 0.0047 26.1 7.3 61 2-63 49-109 (604)
152 PF08499 PDEase_I_N: 3'5'-cycl 33.8 25 0.00054 22.2 1.2 35 150-184 21-58 (59)
153 PF05667 DUF812: Protein of un 33.8 1.8E+02 0.004 27.3 7.3 43 17-59 441-483 (594)
154 PF05667 DUF812: Protein of un 33.7 3.8E+02 0.0082 25.2 9.3 40 5-44 324-363 (594)
155 KOG0933|consensus 33.6 4.4E+02 0.0096 26.6 9.7 43 11-53 817-859 (1174)
156 smart00502 BBC B-Box C-termina 33.2 1.7E+02 0.0036 20.3 7.8 45 11-55 2-46 (127)
157 TIGR02449 conserved hypothetic 32.5 1.4E+02 0.003 19.2 7.4 45 20-64 4-48 (65)
158 PF05384 DegS: Sensor protein 32.3 2.3E+02 0.005 21.7 7.6 49 5-53 23-71 (159)
159 KOG2685|consensus 32.2 3.5E+02 0.0075 24.2 8.2 56 6-64 348-403 (421)
160 PF02996 Prefoldin: Prefoldin 32.2 1.8E+02 0.0039 20.4 6.3 38 17-54 78-115 (120)
161 PF10498 IFT57: Intra-flagella 32.2 1.8E+02 0.0039 25.4 6.6 52 3-54 267-318 (359)
162 PRK04778 septation ring format 32.2 3.2E+02 0.0069 25.4 8.6 49 4-52 378-426 (569)
163 cd07593 BAR_MUG137_fungi The B 32.0 2.7E+02 0.0059 22.4 7.9 39 5-43 117-155 (215)
164 PRK09039 hypothetical protein; 31.9 3.4E+02 0.0073 23.5 9.7 6 186-191 316-321 (343)
165 PF09325 Vps5: Vps5 C terminal 31.8 2E+02 0.0044 22.8 6.6 23 66-90 212-234 (236)
166 KOG0288|consensus 31.4 3.8E+02 0.0083 24.0 9.3 38 4-41 29-66 (459)
167 PRK09458 pspB phage shock prot 31.1 1.5E+02 0.0032 19.7 4.5 26 8-33 41-66 (75)
168 COG1842 PspA Phage shock prote 31.1 2.9E+02 0.0063 22.4 9.9 54 6-59 89-142 (225)
169 COG5374 Uncharacterized conser 30.8 2.7E+02 0.0057 21.9 7.4 38 12-49 139-176 (192)
170 PF10168 Nup88: Nuclear pore c 30.8 2.3E+02 0.005 27.3 7.6 13 41-53 636-648 (717)
171 cd00584 Prefoldin_alpha Prefol 30.6 2.1E+02 0.0045 20.6 6.3 35 19-53 90-124 (129)
172 PF14197 Cep57_CLD_2: Centroso 30.6 1.5E+02 0.0034 19.2 8.1 49 8-56 4-52 (69)
173 COG4949 Uncharacterized membra 29.6 2.9E+02 0.0063 23.8 7.1 31 4-34 300-330 (424)
174 PF05010 TACC: Transforming ac 29.5 3E+02 0.0064 22.1 8.4 12 23-34 143-154 (207)
175 cd07628 BAR_Atg24p The Bin/Amp 29.4 2.7E+02 0.0059 21.6 9.7 42 3-44 5-46 (185)
176 smart00787 Spc7 Spc7 kinetocho 29.4 3.6E+02 0.0079 23.0 10.4 64 11-74 206-269 (312)
177 KOG3647|consensus 29.2 3E+02 0.0066 23.1 7.0 62 9-70 133-194 (338)
178 PF03961 DUF342: Protein of un 28.9 4.2E+02 0.0092 23.7 8.8 32 6-37 331-362 (451)
179 PF10779 XhlA: Haemolysin XhlA 28.8 1.7E+02 0.0036 18.9 8.8 46 14-59 4-49 (71)
180 PF08232 Striatin: Striatin fa 28.7 2.4E+02 0.0052 20.8 6.7 25 35-59 16-40 (134)
181 PF08172 CASP_C: CASP C termin 28.5 3.4E+02 0.0073 22.4 7.9 47 7-53 84-130 (248)
182 KOG4010|consensus 28.5 3E+02 0.0065 21.8 9.0 29 9-37 44-72 (208)
183 PF08172 CASP_C: CASP C termin 28.5 1.2E+02 0.0026 25.0 4.7 34 12-45 2-35 (248)
184 PF13094 CENP-Q: CENP-Q, a CEN 28.3 2.6E+02 0.0056 21.0 7.4 51 11-61 22-72 (160)
185 PF06667 PspB: Phage shock pro 28.0 1.7E+02 0.0037 19.4 4.5 26 8-33 41-66 (75)
186 KOG4643|consensus 27.9 6.5E+02 0.014 25.5 10.0 48 6-53 478-525 (1195)
187 PRK04406 hypothetical protein; 27.8 1.8E+02 0.004 19.1 8.2 49 7-55 9-57 (75)
188 TIGR02976 phageshock_pspB phag 27.8 1.7E+02 0.0037 19.4 4.5 25 9-33 42-66 (75)
189 PRK00295 hypothetical protein; 27.7 1.7E+02 0.0038 18.8 7.9 48 9-56 5-52 (68)
190 PHA00728 hypothetical protein 27.4 1.2E+02 0.0026 22.1 3.8 28 8-35 4-31 (151)
191 PF03962 Mnd1: Mnd1 family; I 27.0 3.1E+02 0.0067 21.5 7.6 51 9-59 69-125 (188)
192 PF06160 EzrA: Septation ring 27.0 4.3E+02 0.0093 24.5 8.5 50 4-53 374-423 (560)
193 COG1422 Predicted membrane pro 26.8 3.3E+02 0.0072 21.7 6.9 19 12-30 75-93 (201)
194 PF14817 HAUS5: HAUS augmin-li 26.8 5.6E+02 0.012 24.4 10.7 46 9-54 79-124 (632)
195 COG5185 HEC1 Protein involved 26.8 4.5E+02 0.0097 24.1 8.0 30 3-32 369-398 (622)
196 PF02403 Seryl_tRNA_N: Seryl-t 26.7 2.2E+02 0.0048 19.7 7.3 27 9-35 36-62 (108)
197 COG5117 NOC3 Protein involved 26.6 5E+02 0.011 23.8 10.7 74 15-91 375-455 (657)
198 PF11570 E2R135: Coiled-coil r 26.6 2.7E+02 0.0058 20.6 7.0 46 3-48 9-54 (136)
199 PF15233 SYCE1: Synaptonemal c 26.4 2.7E+02 0.0059 20.6 7.6 40 5-44 9-48 (134)
200 PF02183 HALZ: Homeobox associ 26.4 1.5E+02 0.0032 17.5 5.9 36 14-49 3-38 (45)
201 PF03148 Tektin: Tektin family 26.1 4.2E+02 0.0092 23.2 8.0 43 6-48 321-363 (384)
202 PRK00736 hypothetical protein; 26.1 1.9E+02 0.0041 18.6 7.9 48 9-56 5-52 (68)
203 KOG0995|consensus 26.0 5.5E+02 0.012 24.0 9.6 42 3-44 333-374 (581)
204 PF10168 Nup88: Nuclear pore c 25.9 6.1E+02 0.013 24.5 11.8 47 14-60 570-616 (717)
205 COG4372 Uncharacterized protei 25.8 4.8E+02 0.01 23.3 9.0 48 6-53 113-160 (499)
206 PF11570 E2R135: Coiled-coil r 25.8 2.8E+02 0.006 20.5 7.2 45 3-47 70-115 (136)
207 KOG0933|consensus 25.8 7.1E+02 0.015 25.2 9.9 10 201-210 1127-1136(1174)
208 PRK00888 ftsB cell division pr 25.7 2.3E+02 0.005 19.9 5.2 35 17-51 28-62 (105)
209 PF10211 Ax_dynein_light: Axon 25.7 3.3E+02 0.0071 21.3 8.5 29 22-50 126-154 (189)
210 PF10158 LOH1CR12: Tumour supp 25.7 2.4E+02 0.0051 20.8 5.4 7 72-78 116-122 (131)
211 PF04849 HAP1_N: HAP1 N-termin 25.4 4.3E+02 0.0093 22.6 7.8 42 19-60 202-243 (306)
212 PF03449 GreA_GreB_N: Transcri 25.4 1.1E+02 0.0024 20.0 3.3 25 3-27 47-71 (74)
213 KOG4001|consensus 25.3 3.6E+02 0.0078 21.7 7.2 21 10-30 200-220 (259)
214 COG2433 Uncharacterized conser 25.3 3.1E+02 0.0067 25.9 7.0 18 137-154 544-561 (652)
215 TIGR03752 conj_TIGR03752 integ 25.2 5.3E+02 0.011 23.5 8.4 13 169-181 284-296 (472)
216 PF15294 Leu_zip: Leucine zipp 25.1 4.2E+02 0.0091 22.3 7.7 45 7-51 130-174 (278)
217 KOG2010|consensus 24.7 4.6E+02 0.01 22.7 8.9 46 11-56 149-194 (405)
218 KOG3691|consensus 24.4 7.1E+02 0.015 24.7 10.1 73 2-74 82-177 (982)
219 PRK00409 recombination and DNA 24.3 4.5E+02 0.0098 25.6 8.4 52 4-55 522-573 (782)
220 KOG0250|consensus 24.3 7.3E+02 0.016 25.2 9.6 43 11-53 396-438 (1074)
221 PRK04778 septation ring format 24.3 5.8E+02 0.013 23.7 9.2 14 37-50 383-396 (569)
222 cd00890 Prefoldin Prefoldin is 24.2 2.6E+02 0.0057 19.7 6.8 35 19-53 90-124 (129)
223 PRK02224 chromosome segregatio 24.2 5.2E+02 0.011 25.2 8.9 33 18-50 260-292 (880)
224 PF07334 IFP_35_N: Interferon- 23.8 1.6E+02 0.0034 19.6 3.7 24 32-55 2-25 (76)
225 PF10475 DUF2450: Protein of u 23.8 4.3E+02 0.0094 22.0 8.3 39 3-41 61-99 (291)
226 PF05266 DUF724: Protein of un 23.6 3.7E+02 0.008 21.2 8.5 30 23-52 117-146 (190)
227 KOG0981|consensus 23.5 1.8E+02 0.004 27.2 5.2 69 4-72 638-720 (759)
228 PF04420 CHD5: CHD5-like prote 23.3 1.4E+02 0.0031 22.7 4.0 58 3-60 41-103 (161)
229 PRK00979 tetrahydromethanopter 23.2 2.7E+02 0.0059 23.8 5.9 92 70-180 46-146 (308)
230 PF01920 Prefoldin_2: Prefoldi 23.1 2.5E+02 0.0054 19.0 6.1 35 12-46 65-99 (106)
231 PF07106 TBPIP: Tat binding pr 23.0 3.4E+02 0.0074 20.5 11.6 82 3-88 73-156 (169)
232 PF11262 Tho2: Transcription f 23.0 4.6E+02 0.01 22.1 8.4 33 21-53 51-83 (298)
233 PF14193 DUF4315: Domain of un 22.9 2.5E+02 0.0054 19.0 5.5 13 41-53 19-31 (83)
234 TIGR00999 8a0102 Membrane Fusi 22.6 4.1E+02 0.0088 21.3 8.0 30 4-33 18-47 (265)
235 PF14817 HAUS5: HAUS augmin-li 22.6 5.3E+02 0.011 24.5 8.2 51 3-53 80-130 (632)
236 KOG3650|consensus 22.6 2.8E+02 0.0061 19.4 6.5 32 9-40 56-87 (120)
237 PF14389 Lzipper-MIP1: Leucine 22.4 2.5E+02 0.0053 19.1 4.6 63 9-71 8-74 (88)
238 PF04325 DUF465: Protein of un 22.3 1.8E+02 0.004 17.2 5.5 45 5-49 2-46 (49)
239 PF08946 Osmo_CC: Osmosensory 22.2 1.9E+02 0.004 17.2 3.8 27 11-37 7-33 (46)
240 PRK14161 heat shock protein Gr 22.2 3.8E+02 0.0083 20.9 6.7 30 14-43 17-46 (178)
241 cd00632 Prefoldin_beta Prefold 22.1 2.8E+02 0.006 19.2 6.8 19 4-22 15-33 (105)
242 TIGR02169 SMC_prok_A chromosom 22.0 8E+02 0.017 24.5 10.2 14 139-152 549-562 (1164)
243 PF04518 Effector_1: Effector 21.8 5.6E+02 0.012 22.6 10.0 56 6-61 204-266 (379)
244 TIGR01069 mutS2 MutS2 family p 21.5 7.6E+02 0.017 24.0 10.3 34 21-54 527-560 (771)
245 KOG0243|consensus 21.5 7E+02 0.015 25.3 8.9 27 9-35 441-467 (1041)
246 PF10549 ORF11CD3: ORF11CD3 do 21.4 2.2E+02 0.0048 17.8 6.8 43 17-59 7-49 (57)
247 PF13747 DUF4164: Domain of un 21.2 2.8E+02 0.006 18.9 8.0 22 35-56 44-65 (89)
248 cd07665 BAR_SNX1 The Bin/Amphi 21.2 4.6E+02 0.01 21.4 6.9 26 31-56 160-185 (234)
249 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.2 3.3E+02 0.0072 19.8 8.1 21 36-56 90-110 (132)
250 PF06160 EzrA: Septation ring 21.1 5.1E+02 0.011 24.1 7.8 38 36-73 471-508 (560)
251 PRK06975 bifunctional uroporph 21.0 5E+02 0.011 24.7 7.9 35 9-43 385-419 (656)
252 PF05325 DUF730: Protein of un 21.0 3E+02 0.0065 19.2 6.7 44 12-55 74-117 (122)
253 TIGR01061 parC_Gpos DNA topois 20.9 2.9E+02 0.0063 26.7 6.3 45 9-53 427-471 (738)
254 PF02388 FemAB: FemAB family; 20.8 4.9E+02 0.011 23.0 7.4 22 11-32 244-265 (406)
255 PRK14161 heat shock protein Gr 20.8 4.1E+02 0.0089 20.7 6.1 34 20-53 16-49 (178)
256 PF10458 Val_tRNA-synt_C: Valy 20.7 2.3E+02 0.0051 17.8 6.7 49 8-56 3-58 (66)
257 TIGR01069 mutS2 MutS2 family p 20.5 6E+02 0.013 24.7 8.4 33 11-43 524-556 (771)
258 PRK03947 prefoldin subunit alp 20.5 3.5E+02 0.0076 19.7 7.3 40 16-55 94-133 (140)
259 KOG0994|consensus 20.3 5.6E+02 0.012 26.5 7.9 56 5-60 1650-1705(1758)
260 PRK00373 V-type ATP synthase s 20.3 3.9E+02 0.0086 21.0 6.1 22 29-50 149-170 (204)
261 PRK14625 hypothetical protein; 20.2 2E+02 0.0043 20.5 3.9 26 2-27 2-27 (109)
262 KOG3119|consensus 20.1 5.1E+02 0.011 21.5 7.7 41 16-56 208-248 (269)
No 1
>KOG3595|consensus
Probab=99.89 E-value=6.6e-23 Score=201.29 Aligned_cols=193 Identities=37% Similarity=0.576 Sum_probs=180.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM 81 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l 81 (217)
.+|+....++..++.++..+..++.+|.+++.+|++|..||.+..+.+......++||++++++++.|+|+++..+|..+
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~ 1048 (1395)
T KOG3595|consen 969 DEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSL 1048 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhhhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccC
Q psy12734 82 VYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKN 161 (217)
Q Consensus 82 ~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~ 161 (217)
+. .|...+....+ +..++++..+++++.....|...|+|.|+++++|++++.++.+||+++||++++..||++.++.+
T Consensus 1049 ~~-~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~ 1126 (1395)
T KOG3595|consen 1049 LR-LWESLCTQLKI-VLSNFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESEN 1126 (1395)
T ss_pred HH-HhHHhcCcccc-cccccchHhhcCchHhhcchhhccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhc
Confidence 88 89998888888 88899999999999999999999999999999999999999999999999999999999999989
Q ss_pred ccccccC----CCcchHHHhhhcccccccccCCcccCchh
Q psy12734 162 NLKWNSE----GLPPDELSIQNGILSTRGCHFPLCIDPQT 197 (217)
Q Consensus 162 ~l~v~~~----~l~~le~ai~~G~iv~~~~~~p~~idp~~ 197 (217)
++.++++ ++..++.|+++|.+++. ++.-+.+||..
T Consensus 1127 ~~~~i~~~~~~~l~~le~a~~~g~~il~-~~~~e~~d~~l 1165 (1395)
T KOG3595|consen 1127 KLQVISFNEKEFLRQLENALRFGEPVLI-EDVNEELDPAL 1165 (1395)
T ss_pred ccceeeccchhHHHHHHhHhccCCceec-cchhhhhchhh
Confidence 9999997 89999999999998875 55555566643
No 2
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.84 E-value=8.5e-22 Score=159.59 Aligned_cols=91 Identities=43% Similarity=0.562 Sum_probs=67.7
Q ss_pred ccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccCccccccC----CCcchHHHhhhcc
Q psy12734 106 ELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSE----GLPPDELSIQNGI 181 (217)
Q Consensus 106 ~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~----~l~~le~ai~~G~ 181 (217)
+|+++.++..|..+|||.|++|+|||+++.++.||||+|||+++|.+||+++++ +++.++++ |++++|.|+++|.
T Consensus 1 ~L~d~~~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~-~~l~v~~~~~~~~~~~le~air~G~ 79 (228)
T PF12781_consen 1 MLSDDVEIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYK-NDLEVTSFSDSNFLKQLENAIRFGK 79 (228)
T ss_dssp ---------HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCC-CCEEEEETTSTCHHHHHHHHHHCT-
T ss_pred CCccccchhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhh-hcccccccchHhHHHHHHHHHHcCC
Confidence 478899999999999999999999999999999999999999999999999875 45889987 8899999999999
Q ss_pred cccc---cccCCcccCchh
Q psy12734 182 LSTR---GCHFPLCIDPQT 197 (217)
Q Consensus 182 iv~~---~~~~p~~idp~~ 197 (217)
+++. .+.++++++|-.
T Consensus 80 ~llIe~v~e~~dp~l~plL 98 (228)
T PF12781_consen 80 PLLIENVGESLDPILDPLL 98 (228)
T ss_dssp EEEEC-GCSCHHCTCHHHH
T ss_pred eeeecccccccChhhhhhh
Confidence 8764 234556666654
No 3
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=99.72 E-value=1.6e-17 Score=142.65 Aligned_cols=89 Identities=40% Similarity=0.705 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM 81 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l 81 (217)
.+|++.+.+++.|+.+++.++.+|++|.+|+.+|++|..||.+++..++.+...++||++++|||++|+|||+++||..+
T Consensus 256 ~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~l 335 (344)
T PF12777_consen 256 KEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEYRQEL 335 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhh
Q psy12734 82 VYVDWQSNI 90 (217)
Q Consensus 82 ~~~~w~~~~ 90 (217)
++..|..++
T Consensus 336 ~~~~W~~~l 344 (344)
T PF12777_consen 336 LKKMWKPYL 344 (344)
T ss_dssp HHHH-----
T ss_pred HHHhccccC
Confidence 876798753
No 4
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.22 E-value=2.1e-12 Score=123.47 Aligned_cols=190 Identities=11% Similarity=-0.010 Sum_probs=156.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM 81 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l 81 (217)
.+|+-...+++-.+.++...+.++.+.-.+++.|.-|..+|....+++.+....|+||+..++++.+|+|.+++.-|..+
T Consensus 2346 ~~YSl~I~~Vh~~~~~md~v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk~m~eL~g~~~~sS~~~~y~g~l~~~~Ra~~ 2425 (3164)
T COG5245 2346 SYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIE 2425 (3164)
T ss_pred HHHHHHHHHHHhHhhhhhhHHHhhhhceeeeeecceecccccchHhhccHHHHHhhcCCcchheeeeeeccccHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhhHHHhh-hhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcC-CCcceeecchhhHHHHHHhccc
Q psy12734 82 VYVDWQSNI-TKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRG-CHFPLCIDPQTQALKWIRNRED 159 (217)
Q Consensus 82 ~~~~w~~~~-~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~-~r~PlliDP~~~~~~wl~~~~~ 159 (217)
.. ...-.+ +++.+.......+++.++....-.+|... ..|+.+||.-+.+.. .-.|+++||..++..-+.++++
T Consensus 2426 ~~-~~~~~Is~~F~~k~~~~r~fI~~~Vq~~e~~K~~~c---~tDy~lEN~~i~~~~qd~~~~L~dpss~ivt~~~~~y~ 2501 (3164)
T COG5245 2426 FG-MSFIRISKEFRDKEIRRRQFITEGVQKIEDFKEEAC---STDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYD 2501 (3164)
T ss_pred Hh-hhHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHh---cchhcchhhHHHhhccccHhHhcCcHHHHHHhhHHHhc
Confidence 64 233333 24444444455555556555555567554 568899998776654 5568999999999999999999
Q ss_pred cCccccccC----CCcchHHHhhhcc--cccccccCCcccCc
Q psy12734 160 KNNLKWNSE----GLPPDELSIQNGI--LSTRGCHFPLCIDP 195 (217)
Q Consensus 160 ~~~l~v~~~----~l~~le~ai~~G~--iv~~~~~~p~~idp 195 (217)
++.....++ |...+++|+++|. ++.+++-|++.|.|
T Consensus 2502 ~kkail~sf~e~~f~~~L~~a~r~gs~~iI~daE~~d~~i~r 2543 (3164)
T COG5245 2502 EKKAILGSFREMEFAFGLSQARREGSDKIIGDAEALDEEIGR 2543 (3164)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHhccceEecchhhhhhhhhh
Confidence 887888887 8899999999999 44567778877776
No 5
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.91 E-value=3.1e-10 Score=92.16 Aligned_cols=47 Identities=47% Similarity=0.774 Sum_probs=40.0
Q ss_pred CCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734 169 GLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQ 216 (217)
Q Consensus 169 ~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~~ 216 (217)
|||.|..|++||.++..+.+||++|||+++|.+||++++++ ++.|+.
T Consensus 15 GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~~-~l~v~~ 61 (228)
T PF12781_consen 15 GLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYKN-DLEVTS 61 (228)
T ss_dssp T--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCCC-CEEEEE
T ss_pred CCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhhh-cccccc
Confidence 99999999999999999999999999999999999999764 477654
No 6
>KOG3595|consensus
Probab=98.78 E-value=3.9e-08 Score=97.93 Aligned_cols=185 Identities=26% Similarity=0.407 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCH
Q psy12734 3 KYVGAMTERQKLQE-------ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTW 75 (217)
Q Consensus 3 ~y~~~~~e~~~l~~-------~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~ 75 (217)
.|.+....+++++. +.+.+...++.....+..+.....+-+..++....+...+-.++..+...+..++.+..
T Consensus 921 ~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~ 1000 (1395)
T KOG3595|consen 921 KYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQ 1000 (1395)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544 55555556666666666666777777777777777778888889999999999999999
Q ss_pred HHHHHHHHhhHHHhhhhcccccCCCCCcccccCCHHHHH--------------------HHHHcCCCCCchhhhhhHHhh
Q psy12734 76 EFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMIS--------------------QWNSEGLPPDELSIQNGILST 135 (217)
Q Consensus 76 ~~r~~l~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~--------------------~W~~~glp~d~~~~en~ii~~ 135 (217)
.++.+ ..+|....+.+....+. +.++..+. .|...+.+ ..+...
T Consensus 1001 ~Ls~e--~~rW~~~~~~~~~~~~~-------l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~~~~-------~~~~~~ 1064 (1395)
T KOG3595|consen 1001 GLSGE--KERWSETSEQFSKQYSR-------LVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESLCTQ-------LKIVLS 1064 (1395)
T ss_pred hcccc--hHHHHHHHHHHHHHHhh-------hhHHHHhhhhhhhhccccCHHHHHHHHHHhHHhcCc-------cccccc
Confidence 99988 56899988776543211 11222222 33222111 111222
Q ss_pred cCCCcceeecchhhHHHHHHhccccCccccccCCCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccC
Q psy12734 136 RGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVN 215 (217)
Q Consensus 136 ~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~ 215 (217)
+....+.+.||+. ...|.. -++|.+..+++||.++..+.+||+++||+.++..|++++++.+++.++
T Consensus 1065 ~~~~~~~l~~~~~-~~~w~~------------~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i 1131 (1395)
T KOG3595|consen 1065 NFSLISMLVDPTE-ILNWNI------------RGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVI 1131 (1395)
T ss_pred ccchHhhcCchHh-hcchhh------------ccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhccccee
Confidence 3344455666652 223332 299999999999999999999999999999999999999998887765
Q ss_pred C
Q psy12734 216 Q 216 (217)
Q Consensus 216 ~ 216 (217)
.
T Consensus 1132 ~ 1132 (1395)
T KOG3595|consen 1132 S 1132 (1395)
T ss_pred e
Confidence 3
No 7
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.92 E-value=0.0039 Score=53.84 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKI-------RWTADLATLEQNRNQLIGACLLSGAFLCYTSAFT 74 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~-------rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~ 74 (217)
.+|.++.++++|++.+++.++..++.++..+.....+.. ..+..++....+...+..+...+...+..+..|.
T Consensus 207 ~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 207 VKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 467777777777777666665555555555555544444 4444444444555666777788888899998888
Q ss_pred HHHHHHHHHhhHHHhhhhcc
Q psy12734 75 WEFRQQMVYVDWQSNITKLS 94 (217)
Q Consensus 75 ~~~r~~l~~~~w~~~~~~~~ 94 (217)
.++..+ +.||...+..+.
T Consensus 287 ~~L~~E--~~RW~~~~~~l~ 304 (344)
T PF12777_consen 287 SGLSGE--KERWSEQIEELE 304 (344)
T ss_dssp HCCHHH--HHCCHCHHHHHH
T ss_pred hhhcch--hhhHHHHHHHHH
Confidence 888888 568998876653
No 8
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=89.51 E-value=5 Score=27.35 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLIS----------GLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~----------~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
+..|++.+++.++.+..+|++++.-+. +++.|.......+...++++..|-+
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467888899999999999988887553 3456777777777777777766633
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.80 E-value=5 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++.++..+.-|+.++++.+.+-.....-...|..+..+.++.....+.++..+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333333333333333333333
No 10
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.76 E-value=6.7 Score=31.69 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
+...+++.|++...+--..|-.+.++.+..++..+.++..|-+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333444444444444444444444444433
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.96 E-value=8 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHhHHHHHhHHHHHH
Q psy12734 31 LISGLGREKIRWTADL 46 (217)
Q Consensus 31 ll~~L~~e~~rw~~~~ 46 (217)
--..|..|+..|++.+
T Consensus 54 eneqlk~e~~~WQerl 69 (79)
T COG3074 54 ENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 12
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.76 E-value=9.4 Score=23.75 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
.+.+.++.+.+..++.+.+|.....++++.++...+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544433
No 13
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=81.16 E-value=2.4 Score=43.61 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT 70 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~ 70 (217)
+|.++++-+...++.+|..++.+.+.|..-+.+-+..++..-.+......|..-+.+-+...
T Consensus 2311 ~E~kRI~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~v~~~~~rs 2372 (3164)
T COG5245 2311 EEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRS 2372 (3164)
T ss_pred hHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHhhhhc
Confidence 34444444555667788888888888888887777777766666655555554444444433
No 14
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.29 E-value=14 Score=24.14 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
...+....+.++++.+.++...+.-...++.....-.+++++++.....+.|
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555666666666666655544
No 15
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.22 E-value=9.4 Score=30.86 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGRE 38 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e 38 (217)
|++...++..|..++.+.+..++..+.-++.|..|
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333
No 16
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=80.10 E-value=18 Score=27.23 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
..+++..+...++.+.+.|..+.........|+..|.+.+++...+...|++..
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L 135 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRL 135 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666677899999999999988888777664
No 17
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.93 E-value=24 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHhHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADK---LISGLGREKIRWTADLA 47 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~---ll~~L~~e~~rw~~~~~ 47 (217)
|.....++..++.++......|+..+. =...|..+...|+..+.
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444444555555555555444444443 33444455666666665
No 18
>PRK02119 hypothetical protein; Provisional
Probab=79.69 E-value=15 Score=24.24 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+...++.++..++.++.-.+..+..|.....+=+..+..+...+..|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888888888888888777777666677776666554
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.84 E-value=35 Score=27.98 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhCCCCHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLS----GAFLCYTSAFTWEFRQQMV 82 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~----aa~l~y~g~l~~~~r~~l~ 82 (217)
...++..++.+++.++...+..++.++.+..+..+.+.++++++.....+.+-+.-. ..|+.---||..+.|..=+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl 133 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERL 133 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 334444455555555555555555566666666666666665555555543322111 1233333477777776644
Q ss_pred HhhHHHhhhhcccccCCCCC
Q psy12734 83 YVDWQSNITKLSIPIVSDFR 102 (217)
Q Consensus 83 ~~~w~~~~~~~~i~~~~~~~ 102 (217)
. .+...+.+..++....|+
T Consensus 134 ~-~L~~~l~~~dv~~~ek~r 152 (251)
T PF11932_consen 134 A-RLRAMLDDADVSLAEKFR 152 (251)
T ss_pred H-HHHHhhhccCCCHHHHHH
Confidence 3 466666666665544343
No 20
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.48 E-value=21 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 26 EAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 26 ~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
+..++-+..|..+...|...++.+..++.
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444455555556665555555543
No 21
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.22 E-value=19 Score=29.58 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQS 88 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~~ 88 (217)
.++..+..++++++.+++.|++.++ .|.+||+..-.. -+-++++.|+..... +.++++. .|..
T Consensus 177 ~dr~~~~~ev~~~e~kve~a~~~~k---~e~~Rf~~~k~~------------D~k~~~~~yae~~i~-~~~~~~~-~We~ 239 (243)
T cd07666 177 ADRDLLKEEIEKLEDKVECANNALK---ADWERWKQNMQT------------DLRSAFTDMAENNIS-YYEECLA-TWES 239 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------HHHHHHHHHHHHHHH-HHHHHHH-HHHH
Confidence 3445666666666666666655533 666666643211 122355555554433 3334454 5776
Q ss_pred hh
Q psy12734 89 NI 90 (217)
Q Consensus 89 ~~ 90 (217)
++
T Consensus 240 fl 241 (243)
T cd07666 240 FL 241 (243)
T ss_pred Hh
Confidence 65
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.80 E-value=28 Score=25.38 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q psy12734 42 WTADLATLEQNRN 54 (217)
Q Consensus 42 w~~~~~~l~~~~~ 54 (217)
....+.+++.+++
T Consensus 73 L~~el~~l~~ry~ 85 (120)
T PF12325_consen 73 LEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.27 E-value=22 Score=23.92 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
++..+++..|+..+..+-.+++.++.....|..|..-.+
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554444444333
No 24
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=75.17 E-value=47 Score=27.70 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 15 QEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 15 ~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+.+.+...++++..+..+..+..+..+-+..+.++..+...
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555544433
No 25
>KOG1962|consensus
Probab=74.60 E-value=18 Score=29.12 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 18 TDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
.+.+.+.++.+++-+...+.+.++-+.++..++++.+.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555444444433
No 26
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.47 E-value=21 Score=23.17 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++.++..++.++.-.+..+..|.....+=+..+..++..+..|
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777766666666666666666544
No 27
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.19 E-value=50 Score=27.51 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+|.....++..++.+++.+..+++....-++.+..+.++-+..+.+++.++..+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555444
No 28
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=73.76 E-value=18 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
|++++.+.+.+-.+++.-...|+.+-.+...-..-.......++..+.+.
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776666666666666655555555555555555444
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.55 E-value=32 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 22 MRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 22 ~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+.++..++..+..|..+..+..+++..++++.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555444444444
No 30
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.56 E-value=21 Score=29.81 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
|+.+..+++...+.++.....++....-+...+.+...+.+.+.++..++..+--.+
T Consensus 188 ~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 188 HETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666666666666666666666666666666666665554443
No 31
>PRK09039 hypothetical protein; Validated
Probab=72.32 E-value=30 Score=29.98 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
.|.+...++..|..+++.+...+...+..|..++.+...-+.++++++.+++...
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666665543
No 32
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=71.38 E-value=21 Score=23.64 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
.|++++.+.+.+-.+++.-.-.|+.+-.+...-..-....+..++..+.++..++
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~~l~ 61 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVV 61 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888887777777777777777777776666666666666666666655443
No 33
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=71.35 E-value=22 Score=23.01 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-.-.|+.+-.+...-..-.......++..+.+...+
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l 55 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRKL 55 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777666777666666655555556666666665555544
No 34
>PRK00846 hypothetical protein; Provisional
Probab=70.78 E-value=29 Score=23.22 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
-+.++.++..++.++.-.+..+..|.....+=+..+..++.++..+.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888888888888888888888887777777777776655533
No 35
>PRK10698 phage shock protein PspA; Provisional
Probab=70.43 E-value=56 Score=26.41 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAF 66 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~ 66 (217)
.+..++......++..+..++.....+..|.....+.+.++.+.+.+...|.+..-.+.+.
T Consensus 89 ~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 89 AALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888999999999999999999999999998887776555543
No 36
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.15 E-value=27 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
..+.|++.|-..|.-|+-|.+..+++-..+..+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 344445555555555555554444444444333
No 37
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.70 E-value=62 Score=27.03 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
..|+..++.-...|+++++-+.+|+.=.--..+.++.++.+++.+
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 38
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=69.62 E-value=23 Score=23.82 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-...|+.+-.+...-..-.......+...+.+...|
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l 64 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKL 64 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777666666666666666666555555555555555555555444
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.55 E-value=54 Score=26.66 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
..+..|..++..+..+.+.|+.-+..|+.+..+....+...+.++..
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555544444444444433
No 40
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=69.55 E-value=25 Score=23.39 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-.-.|+.+-++...-..-....+..++..+.+...+
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l 59 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVI 59 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766666666666666655555555555555555555444
No 41
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=69.48 E-value=25 Score=23.30 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-+-.|+.+-++...-..-.......++..+.+...|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVL 58 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777776666666666666555555555555555555544443
No 42
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=69.45 E-value=25 Score=24.99 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
...++++..+.+..+.+.+.|+..+.+...-|+.-+.+++...
T Consensus 37 e~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~ 79 (106)
T PF11594_consen 37 EQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQH 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456778888888889999999999999999998877776554
No 43
>KOG0804|consensus
Probab=69.25 E-value=33 Score=30.73 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQ 51 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~ 51 (217)
.|....+++..++.+...++.....++..+..++....+|+.++...+.
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777777777777777777666653
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.21 E-value=36 Score=27.69 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+|.++.++...++.+++.+..+++.++.-+..|..++....+.+..++..-
T Consensus 114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 566666677777777777777777777777777666666665555554433
No 45
>PRK00295 hypothetical protein; Provisional
Probab=68.94 E-value=29 Score=22.50 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+++++..++.++.-.+..+..|.....+=+..+..++.++..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777666677777666554
No 46
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=67.15 E-value=27 Score=23.50 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGL---GREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L---~~e~~rw~~~~~~l~~~~~~ 55 (217)
...+...+.....|++.|+.++.++ +.-.+.|.+.++.++.++..
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999885 45667888888888877643
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.10 E-value=81 Score=26.99 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
++.++......++.-++.+..+..++.++...++++..+...+...
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555555544444333
No 48
>PRK11637 AmiB activator; Provisional
Probab=65.68 E-value=73 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+..++.+++.++.++...+.-++.+..+...-+..+.+++.++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444443
No 49
>KOG2264|consensus
Probab=65.36 E-value=42 Score=31.16 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+...++++|..++++...+++..++++...+.|+.+.+..+++-+..++.+
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 334455566666777777777777777766666666666666666655544
No 50
>PRK04406 hypothetical protein; Provisional
Probab=64.72 E-value=38 Score=22.41 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.++.++..++.++.-.+..+..|.....+=+..+..+..++..|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888877777777777776655
No 51
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=64.24 E-value=37 Score=22.60 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-...|+.+-.+...-..-....+..+...+.+...+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l 60 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDL 60 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777766666666666666666555554444445555555544444433
No 52
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=63.59 E-value=43 Score=22.58 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
.|++++.+.+.+-..++.-.-.|+.|-.....-..-....+..+...+.++..+.
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~ 65 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLL 65 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888777777777777777777666555555555555555555554443
No 53
>PRK11637 AmiB activator; Provisional
Probab=63.42 E-value=54 Score=29.13 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
....++..++.++...+..+...+.-+..++.++..-+..++..+..+
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443333
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.44 E-value=79 Score=25.28 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy12734 13 KLQEETDIMMRRLE 26 (217)
Q Consensus 13 ~l~~~~~~~~~kl~ 26 (217)
.++.++++++.+|.
T Consensus 97 ~le~el~~l~~~l~ 110 (206)
T PRK10884 97 DLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 55
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=62.15 E-value=45 Score=22.33 Aligned_cols=8 Identities=13% Similarity=0.584 Sum_probs=3.0
Q ss_pred HHHhHHHH
Q psy12734 37 REKIRWTA 44 (217)
Q Consensus 37 ~e~~rw~~ 44 (217)
.|+..|++
T Consensus 60 ~E~~~Wqe 67 (79)
T PRK15422 60 EQQNGWQE 67 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 56
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.73 E-value=43 Score=21.95 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++.++..++.++.-.+..+..|.....+=+..+..+..++..|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777666677766666544
No 57
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.42 E-value=82 Score=25.09 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
.+..++..++..+...+..+..+...+..|...+.+-..++.+++.+...+.+..
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888888888888888888888777765554
No 58
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.12 E-value=69 Score=26.20 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
++..+..+.+.....++..++.+..|.....+-+..++..+.++..|...
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555555555555433
No 59
>PRK00736 hypothetical protein; Provisional
Probab=60.61 E-value=43 Score=21.65 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 15 QEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 15 ~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+.++..++.++.-.+..+..|.....+=+..+..+..++..|
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666667777777776666666666666665544
No 60
>KOG0804|consensus
Probab=60.56 E-value=71 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
.+++++..+..-+.+-..|...+.-|..++++++.....
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKE 428 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333333444444445555566666555555543
No 61
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.33 E-value=39 Score=21.02 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+..+|.++......+..+++-+..+..+.++..+.+..+-.-++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888889999999999999999988888887766543
No 62
>KOG4196|consensus
Probab=60.04 E-value=67 Score=23.68 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
.+..++.||.+-....+.++....-+..+..|..-|...++.
T Consensus 72 Rv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 72 RVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555555555555555444433
No 63
>PRK04325 hypothetical protein; Provisional
Probab=60.03 E-value=47 Score=21.88 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.++.++..++.++.--+..+..|.....+=+..+..+..++..|
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777776666666666666665544
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=59.59 E-value=84 Score=24.64 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
....+...++..+.....+|...+..+..|..+.......+.+..+..+.+-.+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666665555555444433
No 65
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.19 E-value=59 Score=23.54 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 18 TDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.++...+++..+.-++.|+........++.+++..+..+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555444
No 66
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=58.40 E-value=67 Score=23.89 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIR 41 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~r 41 (217)
.|..+.......+..+..++..|..++..+..-..++.+
T Consensus 73 sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~ 111 (142)
T PF04048_consen 73 SYSQILSSISESQERIRELKESLQEAKSLLGCRREELKE 111 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456666666666666666666666666666555555544
No 67
>KOG0980|consensus
Probab=58.15 E-value=1.6e+02 Score=28.87 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+|.+..+++..-+..+..+++........+..++.+..+|..+.++....++.+
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555555555555555555555555555556666666665555444444443
No 68
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.90 E-value=73 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
+..|..+++.+..+++...++.+...++.......++.+
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i 101 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQI 101 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444444444444443333333333
No 69
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=57.80 E-value=64 Score=22.69 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRL-EAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl-~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
..+.+++..++.+++.+...| +.|..++..-..+....+.....++..+
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l 60 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888877 8888888766666666555555555444
No 70
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=57.71 E-value=50 Score=23.02 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.|++++.+.+.+-.+++.-.-.|+.+-.+...-..-....+..++..+.++.
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~ 60 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIE 60 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666655555555555554444444444444444444433
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.96 E-value=1.1e+02 Score=25.02 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
+.++.....|+......+.|..|+.+..+.+......+.
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn 63 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDIN 63 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555544444443
No 72
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=56.57 E-value=95 Score=26.47 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++......|+.+......+-+.+..-+-.+..|...+...+..+..+...|
T Consensus 248 km~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 248 KMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555544444443
No 73
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=56.44 E-value=89 Score=23.95 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy12734 54 NQLIGACLLSGAF 66 (217)
Q Consensus 54 ~~l~gd~ll~aa~ 66 (217)
+.|++.+-++..|
T Consensus 125 E~l~sqi~vvl~y 137 (159)
T PF05384_consen 125 ENLVSQIGVVLNY 137 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 74
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.43 E-value=79 Score=27.61 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLI----SGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll----~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
++......+..++...-.|++.=++.| ..+-.++..-+.++++.+.++....|.+
T Consensus 238 ~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 238 ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444445555544444444444332 2333444444455555555555554444
No 75
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.37 E-value=77 Score=30.38 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+|..++.++..|..++..+..++..... .-..+..+|...+..+..++..+
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~l 410 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSL 410 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888889999998888888776665555 33345566666666665555443
No 76
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.00 E-value=77 Score=26.44 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHh
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYV 84 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~ 84 (217)
+..-.+...++.+....+..++....-+..+..+...-+..+.+.+.++..+-++.-.....|. -|++++.+
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~--------~r~~~l~~ 105 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV--------ERQELLKK 105 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 3344455556666666666666666666666666666666666666666666666655554443 35555554
Q ss_pred hHHH
Q psy12734 85 DWQS 88 (217)
Q Consensus 85 ~w~~ 88 (217)
|-+.
T Consensus 106 raRA 109 (265)
T COG3883 106 RARA 109 (265)
T ss_pred HHHH
Confidence 4443
No 77
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=54.27 E-value=1.1e+02 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12734 29 DKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT 70 (217)
Q Consensus 29 ~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~ 70 (217)
+.|+..|-.|.-|-.-.---+....+.++.|+.++.-.-+|+
T Consensus 92 n~Li~~llqel~RHg~~~~lLse~a~~mv~DvALaEYaAtFL 133 (277)
T PF15030_consen 92 NRLITHLLQELHRHGPANHLLSELAQSMVNDVALAEYAATFL 133 (277)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444443333334444455667766655444443
No 78
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.98 E-value=1.1e+02 Score=24.33 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=11.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 34 GLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 34 ~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+..+...|+..+..++.+++.+
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444443
No 79
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.71 E-value=56 Score=20.77 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMM-------RRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~-------~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
+.-++-++.+..++..++ .+|+.|+.-...|..+..+....++++
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555554 455555555555555555555555443
No 80
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.40 E-value=81 Score=22.58 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+.......++..+..+...+...+..+..|-.|..+..-....|...+..+
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777888888888888888888888888888888887777777666543
No 81
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.29 E-value=49 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 29 DKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 29 ~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+..++.+..+...+...+.+++..+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443333
No 82
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=53.18 E-value=1.1e+02 Score=23.93 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
..+.++.+.+..+.-++.-.+++........+|+.++.+++.++..
T Consensus 126 ~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 126 YREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666677777777788888888888877654
No 83
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=53.18 E-value=65 Score=21.42 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.+++-..|...+..-+.-+++...++++|..++....+--..++....
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888888888888887776666665553
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.95 E-value=70 Score=28.99 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy12734 46 LATLEQNRN 54 (217)
Q Consensus 46 ~~~l~~~~~ 54 (217)
+++++.+.+
T Consensus 106 IkeLEaE~~ 114 (475)
T PRK13729 106 IEKLGQDNA 114 (475)
T ss_pred HHHHHHHHH
Confidence 333333333
No 85
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=52.84 E-value=68 Score=21.54 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.|++++.+.+.+-.+++.-...|+.+-++...-..-....+..+...+.+..
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~ 59 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIR 59 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777666666666666666666665555544444455554544444443
No 86
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=52.63 E-value=45 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 18 TDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
+++++.++.....++..|+.-+++|++....+.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~ 34 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYR 34 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888887666553
No 87
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.30 E-value=65 Score=21.17 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
..+++++.+.+.++.--+..|..|+.-...-...+++++.++..|.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~ 49 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT 49 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777776655555666666665543
No 88
>PRK02119 hypothetical protein; Provisional
Probab=52.04 E-value=66 Score=21.13 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+-.....++..||.+++=.+..++..+..+..-..+..+.+..+..+..++..+
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566788888888888888888888888888888888888888887777554
No 89
>PRK04325 hypothetical protein; Provisional
Probab=51.50 E-value=68 Score=21.12 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
-.....++..||.+++=.+..++..+..+..-+.+..+.+..+..+..++..+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556678888999999999999999999988888888888888887777554
No 90
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=51.47 E-value=33 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12734 30 KLISGLGREKIRWTADLATLEQNRNQLIGACL 61 (217)
Q Consensus 30 ~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~l 61 (217)
.|+..+..|...|..+..+++.+++.|.-++-
T Consensus 20 ELLdrfd~ER~eWE~Q~kemq~kieql~~e~~ 51 (141)
T PF14818_consen 20 ELLDRFDRERQEWEQQWKEMQRKIEQLQKEVK 51 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999999998866553
No 91
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=51.23 E-value=90 Score=25.63 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
+.+...++.+++..+...++...+++
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 92
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=50.54 E-value=1.1e+02 Score=23.25 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
+|.+............+..-..++.+...+..|.........+...+....+.|.
T Consensus 1 ~y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll 55 (157)
T PF04136_consen 1 KYRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLL 55 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4666777777777777777778888888888888777777777777766665553
No 93
>KOG4657|consensus
Probab=50.43 E-value=1.4e+02 Score=24.35 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+....+.+.+.+.+.+++..+.+..+|++.-.++..+..+.+..++.+++.+
T Consensus 54 S~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl 105 (246)
T KOG4657|consen 54 SQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVL 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788888777777777777777777777776666554
No 94
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.43 E-value=1.3e+02 Score=24.08 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGA 65 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa 65 (217)
+..++...+..+...+..+......+..|...+.+.+.++.+++.+...|.+..-.+.+
T Consensus 90 Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 90 ALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777888888888888888888888888888887777666544444
No 95
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=50.18 E-value=67 Score=24.50 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=3.2
Q ss_pred HHHhHHH
Q psy12734 37 REKIRWT 43 (217)
Q Consensus 37 ~e~~rw~ 43 (217)
+|..+|.
T Consensus 63 DeFAkwa 69 (161)
T PF04420_consen 63 DEFAKWA 69 (161)
T ss_dssp TSHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 96
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=50.18 E-value=52 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.136 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
.++.+.||.+++.++.+++.++.-++
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.03 E-value=68 Score=20.70 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
..++..||.+++=.+..++..+..+..-+.+..+.+..+..+..++..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888899999999999999999999988888888887654
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.54 E-value=1.1e+02 Score=26.15 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMM----RRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLL 62 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~----~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll 62 (217)
.++....+...|+....+.. ..|+.++..+..+..+...-+..+.+++.++..+-+.+-.
T Consensus 185 ~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 185 RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444332 3666666666666666666666666666666666555433
No 99
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.54 E-value=77 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
...+.|++.|-..|.-|.-|.+..+.+-..+..+.+.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555555554443
No 100
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.50 E-value=26 Score=27.04 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDI 20 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~ 20 (217)
+|..++.+..-||.++++
T Consensus 8 klN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 8 KLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 677777788888887755
No 101
>KOG1003|consensus
Probab=49.42 E-value=1.3e+02 Score=23.88 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
.+...+...+.++..+-+.+++-+..|+.+.++|...+.....++..+.
T Consensus 144 ~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~ 192 (205)
T KOG1003|consen 144 EELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAK 192 (205)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHH
Confidence 3445556677778888888899999999999999999988888776553
No 102
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.23 E-value=1.2e+02 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=10.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy12734 37 REKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 37 ~e~~rw~~~~~~l~~~~~~l~g 58 (217)
.+...|+..+..|+.+...|..
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544433
No 103
>PRK11020 hypothetical protein; Provisional
Probab=48.93 E-value=99 Score=22.26 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADK-----LISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~-----ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.+|++.|..+++.+..++..|+. ++..+..|.+....+++.++...
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888877764 55555566655555555554443
No 104
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=48.01 E-value=8 Score=34.23 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12734 7 AMTERQKLQEETDIMMRRLEA---ADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLC 68 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~---a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~ 68 (217)
...+++.++.+++++..+++. .+..+..+..++......+++++.-+..--.+..+|++++.
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~ 311 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFI 311 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEE
Confidence 344555666666666665443 33344555555555555555554433222222344444443
No 105
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.97 E-value=1.1e+02 Score=22.70 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.......++.+....+..+++++.-+..++.+...++.....++.++.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555544444444444444443
No 106
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.58 E-value=1.2e+02 Score=22.97 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGR---EKIRWTADLATLEQNRN 54 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~---e~~rw~~~~~~l~~~~~ 54 (217)
|.....+...++.++...+..|..+...|..|.. ..+.++.+++.++....
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3344566677788899999999999999999987 56788888888887765
No 107
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.20 E-value=1e+02 Score=21.80 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTA 44 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~ 44 (217)
....++.+++..+.+++..+.-...|..|..+|++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444455555555544444444445444444443
No 108
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.85 E-value=1e+02 Score=21.76 Aligned_cols=54 Identities=28% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFL 67 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l 67 (217)
.+.+.+++++.....++...+.-++.|-. .+.+..++..+..+-|++-..++.+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt-----~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPT-----RDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55666666777777777777777766632 2334455555555555554444333
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.59 E-value=1.6e+02 Score=24.13 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKL---------ISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~l---------l~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++++.-.++..++.++..+..++.+++.. +.+|..|...|+.....++.++..+
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l 115 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554433 3455666666666666666655544
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.53 E-value=78 Score=20.39 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRW 42 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw 42 (217)
+...+..+++..+.+++..+.-...|..+..++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555
No 111
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.39 E-value=1.1e+02 Score=21.84 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+.......++..+..+...+...+..+..|-.|..+..-....+...+..+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888888777667666655443
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.53 E-value=2.7e+02 Score=26.30 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.2
Q ss_pred cCCCcceeec-chh
Q psy12734 136 RGCHFPLCID-PQT 148 (217)
Q Consensus 136 ~~~r~PlliD-P~~ 148 (217)
.....|++|| |-+
T Consensus 572 ~~~~~p~iiD~p~~ 585 (650)
T TIGR03185 572 SGRRLPVIIDTPLG 585 (650)
T ss_pred cCCCCCEEEcCCcc
Confidence 4556899998 653
No 113
>KOG3647|consensus
Probab=45.47 E-value=1.8e+02 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+++....+|+.+..-.+.|++.++|=+..++...++++.|
T Consensus 120 ~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 120 RLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555444444444444433
No 114
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.44 E-value=1.1e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhC
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR----NQLIGACLLSGAFLCYTS 71 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~----~~l~gd~ll~aa~l~y~g 71 (217)
.++..|.++.+++.+|++..+..+++-+.-.........+-.-+ ...+||..++.++-.+..
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~ 68 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGD 68 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677788888888888887777777555444444444433322 334677776665544443
No 115
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.97 E-value=1.7e+02 Score=25.22 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
.+..+.+.+.+..+.+..+.-+.........+..|.+-+..++..|..++..+.|
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666677777777777777777777777777777788888888777766543
No 116
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.93 E-value=1.1e+02 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
..+.+++..+..++.|.........++.+++..+..
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555544443
No 117
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=44.92 E-value=2.7e+02 Score=26.25 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFL 67 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l 67 (217)
+|....+..+.++..++.++...+....-+..-..+-...-.+++.+..+.+.+.-.--+..+|+
T Consensus 39 ~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~ 103 (618)
T PF06419_consen 39 EFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFL 103 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655555555554444444555555555555554443333344443
No 118
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.13 E-value=1.6e+02 Score=23.41 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhCCCCH--HHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ----LIGACLLSGAFLCYTSAFTW--EFRQQMV 82 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~----l~gd~ll~aa~l~y~g~l~~--~~r~~l~ 82 (217)
.++..|.++.+++.+|++..+...++-+-..........+..-+.. .+||..++.++.-+...|.. .+|..|+
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll 81 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELL 81 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888777777666654444443333333333322 36777777776666554432 3444444
No 119
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.13 E-value=1e+02 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 29 DKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 29 ~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
+..++.+..........+.+++.+
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 120
>KOG0977|consensus
Probab=44.10 E-value=1.6e+02 Score=27.30 Aligned_cols=52 Identities=29% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++...++.+|+.++++...+++.+.+...+-..+...|...+..++.+...+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~ 160 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTL 160 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHH
Confidence 3445566666666666666766666666666666666666666655555443
No 121
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.91 E-value=1.1e+02 Score=23.96 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=5.7
Q ss_pred HHHHHHhhHHHh
Q psy12734 78 RQQMVYVDWQSN 89 (217)
Q Consensus 78 r~~l~~~~w~~~ 89 (217)
..+++. ||...
T Consensus 174 n~~Lv~-Rwm~~ 184 (194)
T PF08614_consen 174 NRELVE-RWMQR 184 (194)
T ss_dssp HHHHHH-HHHHH
T ss_pred HHHHHH-HHHHH
Confidence 344553 67654
No 122
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.47 E-value=1.4e+02 Score=22.48 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.|+........++..++.....++..+.-+.......++=...+.++++..
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~ 71 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNA 71 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777766666665555544444444444444444444444444433
No 123
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.45 E-value=1.5e+02 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=10.0
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 32 ISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 32 l~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+..|..|..........++..+..|
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334434444444444333
No 124
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=43.21 E-value=1.4e+02 Score=22.21 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~l 61 (217)
.|++...+.+.-++.++....+|+....-++.|......-...+.+++.+...|.-.++
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l 89 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLL 89 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777778888888888888888888866556666667777766666544443
No 125
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.92 E-value=1e+02 Score=20.72 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTS 71 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g 71 (217)
.+++.|..++..++..|...-.-+.....|.......-+-|+..+ |+. .+++.|.+.+
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI----~nL-m~~s~v~~s~ 73 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI----GNL-MSSSSVFQST 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHhhhhhhcc
Confidence 346667777777777766666666666666665555544444433 333 4444454443
No 126
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=42.83 E-value=1.8e+02 Score=25.24 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh---------HHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQE------ETDIMMRRLEAADKLISG---------LGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~------~~~~~~~kl~~a~~ll~~---------L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+|.+..++...|+. +...++..++.|+.++.. ...|....+..+..++.+++.|
T Consensus 34 ~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 34 EYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555554 666677788888888874 5677778888888888888766
No 127
>KOG1003|consensus
Probab=42.73 E-value=1.7e+02 Score=23.26 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+|++........+.+++.+..+.+.+...+..|..+.....+.+..+...-+.+
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~ 135 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKL 135 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 577777777777778888888877777777777777666666666665544443
No 128
>KOG4674|consensus
Probab=42.68 E-value=1e+02 Score=32.70 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
+++++...++.+++..+..++..+..-..-+..|..+..+|+.....+-.+
T Consensus 1250 ~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1250 DKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999888877666
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=42.65 E-value=1.4e+02 Score=22.27 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
.....++..+..+..+....+.-|.+|..........++.+.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 130
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.32 E-value=1.6e+02 Score=25.17 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
-+.+++.-+.....++..-...+++++.++..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444333333334444444444333
No 131
>PRK00846 hypothetical protein; Provisional
Probab=41.88 E-value=1e+02 Score=20.52 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
....++..||.+++=.+..++..+..+.....+..+.+..+..+..++..+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777888888888888888888888888888888888888877776653
No 132
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.83 E-value=1.4e+02 Score=21.80 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRL 25 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl 25 (217)
+++....++..++.++.+++.-+
T Consensus 21 ql~~~~~qk~~le~qL~E~~~al 43 (119)
T COG1382 21 QLQKVILQKQQLEAQLKEIEKAL 43 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544433
No 133
>KOG0980|consensus
Probab=41.25 E-value=1.9e+02 Score=28.40 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
+++......+.++.++.....+++..+.-+..+......|...++...+..+.+.+.
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555566666777777777777777777777777777777777766666655444
No 134
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.97 E-value=85 Score=28.47 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
...++||++++..+..++...+....++.+++..+.++..|+.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444334444444555555555555555444
No 135
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=40.73 E-value=1.7e+02 Score=22.55 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTAD 45 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~ 45 (217)
.|+++|+.++.+++..+......|...+.....++.+
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667777777777777777777776666655555544
No 136
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.65 E-value=1.4e+02 Score=21.45 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
+.|...+...+.+++.+..-...+..+...+.+.+..++.+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666655443
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.57 E-value=2.3e+02 Score=24.15 Aligned_cols=9 Identities=22% Similarity=-0.020 Sum_probs=3.5
Q ss_pred ccccCCCCC
Q psy12734 94 SIPIVSDFR 102 (217)
Q Consensus 94 ~i~~~~~~~ 102 (217)
.|.+.+.|.
T Consensus 143 ~I~hdG~fG 151 (314)
T PF04111_consen 143 HIWHDGPFG 151 (314)
T ss_dssp -EEEETTEE
T ss_pred eEeecCCee
Confidence 344444443
No 138
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.85 E-value=1.8e+02 Score=22.76 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIM 21 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~ 21 (217)
....++..++.+++..
T Consensus 80 ~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 80 ELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 139
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=39.83 E-value=1e+02 Score=23.60 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAF 73 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l 73 (217)
++.+.++.+++....-..+++.+++.+.+..+|.++-+.=-.-....+.--..++++.+.|.-|+
T Consensus 52 ~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~ 116 (156)
T PF08372_consen 52 RPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPF 116 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhH
Confidence 34555666666666666667777776666666655433221112233333345667777777765
No 140
>KOG2391|consensus
Probab=39.74 E-value=2.1e+02 Score=24.84 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.9
Q ss_pred CchhhhhhHH
Q psy12734 124 DELSIQNGIL 133 (217)
Q Consensus 124 d~~~~en~ii 133 (217)
++..+|.+|.
T Consensus 311 ~d~aieD~i~ 320 (365)
T KOG2391|consen 311 LDLAIEDAIY 320 (365)
T ss_pred hhhHHHHHHH
Confidence 3455555443
No 141
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.71 E-value=2.7e+02 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|.+...+...|-.+++.|...|+..+.++..-+.++.....++..++.+...+
T Consensus 8 dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l 61 (508)
T PF04129_consen 8 DYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSL 61 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667777778888888888888887777777777777666666655443
No 142
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=39.58 E-value=1.6e+02 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRW 42 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw 42 (217)
.++..+...+.....-+..+.+|+..+
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 143
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=39.45 E-value=1.2e+02 Score=20.59 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.-+.++++++.++..|...-....+++.-++.-...+
T Consensus 26 sFE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL 62 (86)
T PRK14065 26 SFEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQEL 62 (86)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999999999888888877655433
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.55 E-value=2.3e+02 Score=23.83 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTS 71 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g 71 (217)
-|++.++..+.+.+..+.-...|..|..+..+..+.+++..+.|.-|.-.=...|.|+.
T Consensus 43 SlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lE 101 (307)
T PF10481_consen 43 SLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLE 101 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHH
Confidence 34555556666667777777888888888888888888888888777766666666663
No 145
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=37.27 E-value=3e+02 Score=26.36 Aligned_cols=75 Identities=15% Similarity=0.277 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEA----ADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFR 78 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~----a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r 78 (217)
+|-....+.++|+.-++-+-.||+. |+..+..+-+ ......+.+..+...|.+|. ..+|
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e---~L~~r~~~L~~k~~~L~~e~--------------~~LK 262 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACE---ELEDRYERLEKKWKKLEKEA--------------ESLK 262 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 4566667778888877777777764 3333333332 33344455666666666664 2467
Q ss_pred HHHHHhhHHHhhhhcc
Q psy12734 79 QQMVYVDWQSNITKLS 94 (217)
Q Consensus 79 ~~l~~~~w~~~~~~~~ 94 (217)
+++..++|...++..+
T Consensus 263 ~ELiedRW~~vFr~l~ 278 (683)
T PF08580_consen 263 KELIEDRWNIVFRNLG 278 (683)
T ss_pred HHhhhhhHHHHHHHHH
Confidence 7777778887776554
No 146
>KOG4571|consensus
Probab=36.93 E-value=2.5e+02 Score=23.83 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+..+..+.+...+.+|+.+.++.++++.+++++++.+
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677778888888889999999998888655
No 147
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.49 E-value=1.2e+02 Score=19.76 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
...++..||.+++=.+..++..+..+..-+.+..+.+..+..+..++..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888888888888888888888888888888888887777554
No 148
>KOG4343|consensus
Probab=36.16 E-value=2.3e+02 Score=26.21 Aligned_cols=47 Identities=23% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+...+.+.++.+.-++.+|+++..-.+.|..|.....+++..+..+-
T Consensus 293 A~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 293 ACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 33444555677788888999988888889888888888888776543
No 149
>KOG0996|consensus
Probab=35.60 E-value=5.1e+02 Score=26.61 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=34.9
Q ss_pred HhhcCCCcc-eeecchhh---HHHHHHhccccCccccccC-CCcchHHHhhhcccccccccCCcccC
Q psy12734 133 LSTRGCHFP-LCIDPQTQ---ALKWIRNREDKNNLKWNSE-GLPPDELSIQNGILSTRGCHFPLCID 194 (217)
Q Consensus 133 i~~~~~r~P-lliDP~~~---~~~wl~~~~~~~~l~v~~~-~l~~le~ai~~G~iv~~~~~~p~~id 194 (217)
|...+.+.- +++|.... +..+|+.. +|-...| +|..+..-..++.+++..++.|-+.|
T Consensus 636 IsTac~~LdyiVVdt~e~aq~cI~fl~~~----nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfD 698 (1293)
T KOG0996|consen 636 ISTACARLDYIVVDTIETAQECINFLKKN----NLGRATFIILDKIKDHQKKLAPITTPENVPRLFD 698 (1293)
T ss_pred HHHhccccceEEeccHHHHHHHHHHHHHc----CCCceeEEehHhhhhhhhccCCCCCCCCcchHhh
Confidence 334444443 56676544 45566653 3445566 77777766888888777677775544
No 150
>KOG0976|consensus
Probab=33.89 E-value=2.4e+02 Score=27.66 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+..++.+.+...+...+.+++..+.++..|-.+...-+++++.+++++..+
T Consensus 354 ~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 354 NELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555566667778888888888888888888888888888877776444
No 151
>KOG3564|consensus
Probab=33.87 E-value=2.2e+02 Score=26.06 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLS 63 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~ 63 (217)
++..++.....+.+.++.....+|..|...+..+-.+..+-+...+.++.+. .+++|.+.+
T Consensus 49 ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i-~~i~d~l~~ 109 (604)
T KOG3564|consen 49 AELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQI-QLIKDMLKC 109 (604)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHhc
No 152
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=33.84 E-value=25 Score=22.19 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHhccccCccccccC---CCcchHHHhhhccccc
Q psy12734 150 ALKWIRNREDKNNLKWNSE---GLPPDELSIQNGILST 184 (217)
Q Consensus 150 ~~~wl~~~~~~~~l~v~~~---~l~~le~ai~~G~iv~ 184 (217)
..+||...+-.+...=.+. -++.+.+|+++|+++.
T Consensus 21 Vr~WLasTFtrq~~~~~~~ek~~frsV~~AvqagIfv~ 58 (59)
T PF08499_consen 21 VRDWLASTFTRQVTRRRSEEKPKFRSVVHAVQAGIFVE 58 (59)
T ss_pred HHHHHHHHHHhhhhccccccchhHHHHHHHHHhcceec
Confidence 6889887654331000011 6788999999998764
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.77 E-value=1.8e+02 Score=27.29 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
+.......++.....+..+..|...+.+.+.+|..+++.+..+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444456666777778888888889999999998888888766
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.71 E-value=3.8e+02 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTA 44 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~ 44 (217)
.+..++...|+.+++.+...++....-++.+..+...-..
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444444433333
No 155
>KOG0933|consensus
Probab=33.59 E-value=4.4e+02 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.+.|+.+.++.+..+...+..+.++..+......++..+..+.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 156
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=33.16 E-value=1.7e+02 Score=20.34 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+..|...++.+..+.+.....+..+......++.+.......+..
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~ 46 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKA 46 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777666655543
No 157
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.52 E-value=1.4e+02 Score=19.23 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSG 64 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~a 64 (217)
....|++..-.....|..|.....+....+..+-..|+.....|.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544444443
No 158
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.34 E-value=2.3e+02 Score=21.69 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+.+..+.+.++.++++++..+.....-++.|+....+-...+.+.+..+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666666666666666666666666666665555555555555444
No 159
>KOG2685|consensus
Probab=32.22 E-value=3.5e+02 Score=24.18 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSG 64 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~a 64 (217)
..+.|++.+...+..++.+|..|+.-++.|..-..+.+..+.-. -..|.-|-..|.
T Consensus 348 ~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k---~nsL~ID~ekcm 403 (421)
T KOG2685|consen 348 RLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK---ANSLFIDREKCM 403 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcchhccHHHHH
Confidence 45689999999999999999999999999988888887655443 344444443333
No 160
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=32.22 E-value=1.8e+02 Score=20.41 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
..+-.+.|++..+..+..+..+.......+..+...++
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544443
No 161
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.21 E-value=1.8e+02 Score=25.45 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
+|+..+++....+.++.+++.+.+.+..-+..+..++.+..+.+++.+.+++
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666666666666666666666666655555553
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.17 E-value=3.2e+02 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
|+.+..+.+.+..+++..+.........+.+|.....+-.+.+..+..+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555544444444555444444444444444333
No 163
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=32.05 E-value=2.7e+02 Score=22.40 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
..+.+.++..+-.+..+..++..|+.--..+..|...-+
T Consensus 117 ~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae 155 (215)
T cd07593 117 HSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAK 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 444444444444566666666666443333444443333
No 164
>PRK09039 hypothetical protein; Validated
Probab=31.92 E-value=3.4e+02 Score=23.48 Aligned_cols=6 Identities=50% Similarity=0.695 Sum_probs=2.4
Q ss_pred cccCCc
Q psy12734 186 GCHFPL 191 (217)
Q Consensus 186 ~~~~p~ 191 (217)
+...|.
T Consensus 316 G~~~Pi 321 (343)
T PRK09039 316 GEFQPL 321 (343)
T ss_pred CCcCcC
Confidence 333443
No 165
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.83 E-value=2e+02 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=10.7
Q ss_pred HHhhhCCCCHHHHHHHHHhhHHHhh
Q psy12734 66 FLCYTSAFTWEFRQQMVYVDWQSNI 90 (217)
Q Consensus 66 ~l~y~g~l~~~~r~~l~~~~w~~~~ 90 (217)
+..|+..... +.++++. -|..++
T Consensus 212 l~~~~~~~i~-~~~~~~~-~We~~~ 234 (236)
T PF09325_consen 212 LEEYAESQIE-YQKKMLE-AWETFL 234 (236)
T ss_pred HHHHHHHHHH-HHHHHHH-HHHhHc
Confidence 3444443333 3334444 587654
No 166
>KOG0288|consensus
Probab=31.42 E-value=3.8e+02 Score=23.97 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIR 41 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~r 41 (217)
|+....++..++.+.....+++..-+..+..|+.|...
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~ 66 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQ 66 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555544443
No 167
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.09 E-value=1.5e+02 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
.+..+.|-+..+.++.+++..+++++
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666777777777777777765
No 168
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.08 E-value=2.9e+02 Score=22.43 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
.+..+++.++..++..+..+..+...+..|.....+...++.+++.+...+...
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777777777777665433
No 169
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=2.7e+02 Score=21.91 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
+.++++...+++++..+...+.+|+...+......+..
T Consensus 139 D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ 176 (192)
T COG5374 139 DKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKY 176 (192)
T ss_pred hhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888899989888888877666555444443
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.79 E-value=2.3e+02 Score=27.29 Aligned_cols=13 Identities=8% Similarity=0.350 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy12734 41 RWTADLATLEQNR 53 (217)
Q Consensus 41 rw~~~~~~l~~~~ 53 (217)
+|.++++.++.++
T Consensus 636 ~~~~EL~~~~~~l 648 (717)
T PF10168_consen 636 EFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 171
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.61 E-value=2.1e+02 Score=20.57 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+-++++++..+..+..+..+...-...++.+...+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444444444433
No 172
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.60 E-value=1.5e+02 Score=19.16 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
-.++..|+..+..+.++++.....++.|..|......++...-.....|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~L 52 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKL 52 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888777777666665544444433
No 173
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=29.61 E-value=2.9e+02 Score=23.77 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISG 34 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~ 34 (217)
...+|+-.+..+++.++...||.+|..|+..
T Consensus 300 laPAMRTc~sveeRqanLSrklaRat~LlRt 330 (424)
T COG4949 300 LAPAMRTCQSVEERQANLSRKLARATALLRT 330 (424)
T ss_pred hhhHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567788888899999999999999998854
No 174
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.52 E-value=3e+02 Score=22.08 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q psy12734 23 RRLEAADKLISG 34 (217)
Q Consensus 23 ~kl~~a~~ll~~ 34 (217)
.+|+.|..-++.
T Consensus 143 ekL~~ANeei~~ 154 (207)
T PF05010_consen 143 EKLEKANEEIAQ 154 (207)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 175
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.42 E-value=2.7e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTA 44 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~ 44 (217)
+|.++......|+..+..+.+-..+.-+-...|.........
T Consensus 5 ~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~ 46 (185)
T cd07628 5 EFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLAT 46 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555655555555554444444333444433333333
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.39 E-value=3.6e+02 Score=23.03 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFT 74 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~ 74 (217)
...++++++.....+......+..+..++..-...++....+...+.+..--+...+--+..++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444455555555666666666666666666666666666666666555554444444455555
No 177
>KOG3647|consensus
Probab=29.25 E-value=3e+02 Score=23.11 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT 70 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~ 70 (217)
.+-+.|...++.-+..+++..+-+..|++=.--..+.++.++.+++.+...-++-=-.++|+
T Consensus 133 sdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL 194 (338)
T KOG3647|consen 133 SDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYL 194 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33344444444444555555555555554444455555555555555433333333333443
No 178
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.94 E-value=4.2e+02 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGR 37 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~ 37 (217)
....+.+.|+++++.++.++++.+..+..+..
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455677777777777777777776666654
No 179
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.77 E-value=1.7e+02 Score=18.90 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
+++++...+.+++.-+.-+..|+.-..........+...+..+.++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444444444444444444444444444444333
No 180
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.72 E-value=2.4e+02 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.439 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 35 LGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 35 L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
.+.+...|.-.-++++.++..|-|+
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE 40 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGE 40 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 181
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.53 E-value=3.4e+02 Score=22.39 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
++.+++..+.+..+++..+......+..|..|....+..-.+|-.+.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666555555444444333
No 182
>KOG4010|consensus
Probab=28.50 E-value=3e+02 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGR 37 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~ 37 (217)
.|+++|+.++..++..+...+..+.+.+.
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKer 72 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKER 72 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666555543
No 183
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.46 E-value=1.2e+02 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTAD 45 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~ 45 (217)
+.++.++..++.+++..+.|+..|+..+.+.+..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5688899999999999999999998888776644
No 184
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.26 E-value=2.6e+02 Score=21.00 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACL 61 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~l 61 (217)
.+.+-......++.|.....-+..|..|+.+-...++.-...+..|--.+-
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777777777777777766666666655543
No 185
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.04 E-value=1.7e+02 Score=19.38 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
.+..+.|-+..+.++.+++..+++++
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666777777777776664
No 186
>KOG4643|consensus
Probab=27.86 E-value=6.5e+02 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
....+.+++...++.+...|+.+...+..|......-++++..+...+
T Consensus 478 Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qy 525 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQY 525 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555544444444444444444333
No 187
>PRK04406 hypothetical protein; Provisional
Probab=27.83 E-value=1.8e+02 Score=19.13 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
...++..||.+++=.+..++..+..+..-+.+..+.+..+..+..++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777777777777777665544
No 188
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.79 E-value=1.7e+02 Score=19.36 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
+..+.|-+..+.++.+++..+++++
T Consensus 42 ~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 42 ALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666666666666666654
No 189
>PRK00295 hypothetical protein; Provisional
Probab=27.66 E-value=1.7e+02 Score=18.79 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.++..||.+++=.+..++..+..+..-+.+..+....+..+..++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888888888888888888888888888887777554
No 190
>PHA00728 hypothetical protein
Probab=27.39 E-value=1.2e+02 Score=22.13 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGL 35 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L 35 (217)
.+++++|+.+-++.+.+|...+.++..-
T Consensus 4 ~teveql~keneelkkkla~leal~nn~ 31 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNNE 31 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999999999998764
No 191
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.03 E-value=3.1e+02 Score=21.48 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLG------REKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~------~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
.....|+.+++.+..++...+.-+.... .+.......+.+++.+...|-..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444332 34445556666666666555444
No 192
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.97 E-value=4.3e+02 Score=24.55 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
|+....+.+.+..++...+.........+.+|..+-.+-.+++..++..+
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544444444444444444
No 193
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.85 E-value=3.3e+02 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADK 30 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ 30 (217)
+++++++++.+.+.++|.+
T Consensus 75 ~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 75 KELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 194
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.82 E-value=5.6e+02 Score=24.37 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.++.+|+.+++.+...+...+.-|...+.+..+=....+..-.+..
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~ 124 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKIS 124 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444444444433333333
No 195
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.77 E-value=4.5e+02 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLI 32 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll 32 (217)
+|+...+|+++|-++++...-+.+...+-+
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 466666666666666666555544433333
No 196
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.69 E-value=2.2e+02 Score=19.68 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGL 35 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L 35 (217)
.+...+..+++....+-....+.++.+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444444444444444
No 197
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=26.64 E-value=5e+02 Score=23.78 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHH
Q psy12734 15 QEETDIMMRRLEAADKLISGLGREK-------IRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQ 87 (217)
Q Consensus 15 ~~~~~~~~~kl~~a~~ll~~L~~e~-------~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~ 87 (217)
+.++...+..+..|+..+.+-+.|+ .-..-.+..++.....|+|.++. +.+-|.--+.++++..+++ -..
T Consensus 375 ~KE~~~I~~Emr~ae~i~~a~e~eknqseIlkiif~~Yf~vLk~~~k~lig~vle--Gl~k~~~~~n~eflGD~Le-vl~ 451 (657)
T COG5117 375 EKERLRIQSEMRDAEDIEEAIEEEKNQSEILKIIFRLYFMVLKGDRKDLIGYVLE--GLVKYRKIINPEFLGDLLE-VLY 451 (657)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH--HHHHHHhhcCHHHHhHHHH-HHH
Confidence 3444444444444555444443333 23334455666666778888764 5556666677788877664 355
Q ss_pred Hhhh
Q psy12734 88 SNIT 91 (217)
Q Consensus 88 ~~~~ 91 (217)
+.+.
T Consensus 452 eL~~ 455 (657)
T COG5117 452 ELLN 455 (657)
T ss_pred HHHc
Confidence 4443
No 198
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=26.58 E-value=2.7e+02 Score=20.61 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
.|+.+..|+..-..++..++.++..+...+.+--++++.-...+.+
T Consensus 9 ny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 9 NYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677778888888888888888888888877777777666666655
No 199
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=26.44 E-value=2.7e+02 Score=20.59 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTA 44 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~ 44 (217)
+..+.++.+++..-+.+..-|..|..+..+|..|.+....
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~ 48 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNG 48 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555554445555555555555555555554433
No 200
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.42 E-value=1.5e+02 Score=17.51 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
+|.+.+.....-+....-...|..|.......+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333444444444444333333
No 201
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.11 E-value=4.2e+02 Score=23.23 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
....|+..|+..+..++.+|..|+..+..|.....+.+..+..
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998888887765544
No 202
>PRK00736 hypothetical protein; Provisional
Probab=26.10 E-value=1.9e+02 Score=18.64 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.++..||.+++=.+..++..+..+..-..+..+.+..+..+..++...
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888888888888888888888887777553
No 203
>KOG0995|consensus
Probab=26.02 E-value=5.5e+02 Score=24.01 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTA 44 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~ 44 (217)
.+..+..|+++|.+++..++-.+++...-+-.+..+.++--+
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~ 374 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFK 374 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455566666666666666666665555555555444443333
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.89 E-value=6.1e+02 Score=24.50 Aligned_cols=47 Identities=9% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
|+.+.+..-.+|..++...+.+...-.+..+++++...+.+.|.-.+
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444445555555545554433
No 205
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.80 E-value=4.8e+02 Score=23.25 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.+-+|++..+.+...+...+.+|...+..+.....+.+..+..+..+.
T Consensus 113 ~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr 160 (499)
T COG4372 113 KARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333333
No 206
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.77 E-value=2.8e+02 Score=20.53 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=25.5
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q psy12734 3 KYVGAMTERQK-LQEETDIMMRRLEAADKLISGLGREKIRWTADLA 47 (217)
Q Consensus 3 ~y~~~~~e~~~-l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~ 47 (217)
+|....+.+.. ++.++++-+.++.+|..-+..+++++.|-+.-+.
T Consensus 70 ~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~ 115 (136)
T PF11570_consen 70 EYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALS 115 (136)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33444443333 7778888888888888888888877777665553
No 207
>KOG0933|consensus
Probab=25.76 E-value=7.1e+02 Score=25.22 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.7
Q ss_pred HHHHhhcccC
Q psy12734 201 KWIRNREDKN 210 (217)
Q Consensus 201 ~~~~~~~~~~ 210 (217)
+-|+++..++
T Consensus 1127 ~mIkthF~~s 1136 (1174)
T KOG0933|consen 1127 RMIKTHFTHS 1136 (1174)
T ss_pred HHHHhhCCCC
Confidence 3455554444
No 208
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.74 E-value=2.3e+02 Score=19.91 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQ 51 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~ 51 (217)
.....+++++.++..++.+..+..++..+++.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44555666666666666666666666666655543
No 209
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.69 E-value=3.3e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 22 MRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 22 ~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
..++...+.-...|..+...+....+..+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433
No 210
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.68 E-value=2.4e+02 Score=20.84 Aligned_cols=7 Identities=29% Similarity=0.069 Sum_probs=3.1
Q ss_pred CCCHHHH
Q psy12734 72 AFTWEFR 78 (217)
Q Consensus 72 ~l~~~~r 78 (217)
-|+++.|
T Consensus 116 ~LP~~~R 122 (131)
T PF10158_consen 116 ILPEEER 122 (131)
T ss_pred hCChhhc
Confidence 3444444
No 211
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.44 E-value=4.3e+02 Score=22.60 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
..|-+.+..|+.-+..|..|+.+=.+.....+.++..|.+.+
T Consensus 202 ~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 202 LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666555555555555555544443
No 212
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=25.41 E-value=1.1e+02 Score=20.05 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEA 27 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~ 27 (217)
+|..+..+...++.++..++..|..
T Consensus 47 eY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 47 EYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555544443
No 213
>KOG4001|consensus
Probab=25.32 E-value=3.6e+02 Score=21.67 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADK 30 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ 30 (217)
++..|+..++..+.|++.++.
T Consensus 200 ~k~~Le~~ia~~k~K~e~~e~ 220 (259)
T KOG4001|consen 200 KKKELELKIAQLKKKLETDEI 220 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555544
No 214
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.27 E-value=3.1e+02 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=11.1
Q ss_pred CCCcceeecchhhHHHHH
Q psy12734 137 GCHFPLCIDPQTQALKWI 154 (217)
Q Consensus 137 ~~r~PlliDP~~~~~~wl 154 (217)
....-++-||.|.+..-.
T Consensus 544 ~GDvi~v~~~sG~g~~~a 561 (652)
T COG2433 544 EGDVILVEDPSGGGARTA 561 (652)
T ss_pred cCcEEEEEcCCCcchHhH
Confidence 445567778887664433
No 215
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.20 E-value=5.3e+02 Score=23.53 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=8.3
Q ss_pred CCcchHHHhhhcc
Q psy12734 169 GLPPDELSIQNGI 181 (217)
Q Consensus 169 ~l~~le~ai~~G~ 181 (217)
-||.++-||-.|.
T Consensus 284 eLPDV~GaivSGt 296 (472)
T TIGR03752 284 ELPDVAGAVVSGT 296 (472)
T ss_pred cCCCccceEEeee
Confidence 4566666666665
No 216
>PF15294 Leu_zip: Leucine zipper
Probab=25.10 E-value=4.2e+02 Score=22.34 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQ 51 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~ 51 (217)
...++..|+.+.+.+..++...+......-+|....+.++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999998888876
No 217
>KOG2010|consensus
Probab=24.72 E-value=4.6e+02 Score=22.70 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+.-|+..+.+....|..+.+....+.+|..|-++..+-|+.+++.|
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~el 194 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEEL 194 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666555555555544
No 218
>KOG3691|consensus
Probab=24.38 E-value=7.1e+02 Score=24.75 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HHHH----------------------HHHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKI-RWTA----------------------DLATLEQNRNQLIG 58 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~-rw~~----------------------~~~~l~~~~~~l~g 58 (217)
..|.+++.++...++++-.++..|+.++.++..-.+|+. -|.+ +++.+.++.+.+-.
T Consensus 82 ~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~A 161 (982)
T KOG3691|consen 82 SSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQA 161 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999876666553 3432 22222222233334
Q ss_pred HHHHHHHHHhhhCCCC
Q psy12734 59 ACLLSGAFLCYTSAFT 74 (217)
Q Consensus 59 d~ll~aa~l~y~g~l~ 74 (217)
.-++..++..--|+|.
T Consensus 162 sdll~~~~~~lng~L~ 177 (982)
T KOG3691|consen 162 SDLLTRAWELLNGPLD 177 (982)
T ss_pred HHHHHHHHHHhcCcch
Confidence 4466677777778765
No 219
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.32 E-value=4.5e+02 Score=25.61 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
.++..+++..++.+.++++..+..++++...+..+.+++.+.......+...
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 573 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 220
>KOG0250|consensus
Probab=24.29 E-value=7.3e+02 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+.+.+.+++.++..++..+.++.+|..|.+.....+..-+.+.
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333344444444444444444444444444444444433333
No 221
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.28 E-value=5.8e+02 Score=23.69 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=5.2
Q ss_pred HHHhHHHHHHHHHH
Q psy12734 37 REKIRWTADLATLE 50 (217)
Q Consensus 37 ~e~~rw~~~~~~l~ 50 (217)
.+...+...++.++
T Consensus 383 e~leel~e~leeie 396 (569)
T PRK04778 383 EELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 222
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.25 E-value=2.6e+02 Score=19.72 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+.++++++..+..+..+..+...-...+..+...+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555444444444444444443
No 223
>PRK02224 chromosome segregation protein; Provisional
Probab=24.17 E-value=5.2e+02 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 18 TDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
++..+.+++.++..+..+..+..+-...+.++.
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le 292 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 224
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.80 E-value=1.6e+02 Score=19.65 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=16.7
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 32 ISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 32 l~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+..+..|..+.+..+..++++++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777666654
No 225
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.78 E-value=4.3e+02 Score=22.04 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIR 41 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~r 41 (217)
.|-.++.+...++.++..+-..+...++-+.....+..+
T Consensus 61 ~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 61 SFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567788888888888888888777777777776655443
No 226
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.63 E-value=3.7e+02 Score=21.17 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 23 RRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 23 ~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
.++...+.....++.+....+..+.+++.+
T Consensus 117 ~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 117 KKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443
No 227
>KOG0981|consensus
Probab=23.51 E-value=1.8e+02 Score=27.16 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--H---HHHhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGL--G---REKIRWTADLATLEQNRNQLIGA---------CLLSGAFLCY 69 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L--~---~e~~rw~~~~~~l~~~~~~l~gd---------~ll~aa~l~y 69 (217)
.+.....++.++.++.+++..+.+|..--..+ + .+.+.|+..+++++.++..+.-+ +.|.++.|.|
T Consensus 638 mekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTSKiNY 717 (759)
T KOG0981|consen 638 MEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTSKLNY 717 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhhcceeecccccccc
Confidence 34455666677777777777777664321111 1 14466777777777777666332 3555666777
Q ss_pred hCC
Q psy12734 70 TSA 72 (217)
Q Consensus 70 ~g~ 72 (217)
..|
T Consensus 718 iDP 720 (759)
T KOG0981|consen 718 IDP 720 (759)
T ss_pred cCC
Confidence 665
No 228
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.25 E-value=1.4e+02 Score=22.66 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMM-----RRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~-----~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
++.+...|+.++.+|+..+. +|=.+.++.++.+.+|.+.-+++...-+...+...+-+
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554433 23344556666666666666665555555555544443
No 229
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=23.19 E-value=2.7e+02 Score=23.80 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=51.2
Q ss_pred hCCCCHHHHHHHHHhhHHHhhhhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecc-hh
Q psy12734 70 TSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDP-QT 148 (217)
Q Consensus 70 ~g~l~~~~r~~l~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP-~~ 148 (217)
.|.|+.+--..+++ +-.+.....+.|+ +.+.+.+....-.|... .+......||+||. ..
T Consensus 46 ~G~FDk~~Ae~Li~-~~~elsd~tg~p~-----~~~v~~~~~eam~k~I~-------------~v~~~~d~Pl~IDSt~p 106 (308)
T PRK00979 46 KGIFDKEKAEALIN-RQEELSDKTGNPA-----LLDVVGESPEAMEKYID-------------FVSEITDLPFLIDSTSP 106 (308)
T ss_pred cCccCHHHHHHHHH-HHHHHHHHhCCCe-----EEEEecChHHHHHHHHH-------------HHHhcCCCCEEEeCCCH
Confidence 47888877777765 5666667777775 23556766666666432 22334568999994 33
Q ss_pred hH----HHHHHhccccCccccccC----CCcchHHHhhhc
Q psy12734 149 QA----LKWIRNREDKNNLKWNSE----GLPPDELSIQNG 180 (217)
Q Consensus 149 ~~----~~wl~~~~~~~~l~v~~~----~l~~le~ai~~G 180 (217)
.+ .+..++.-...+..+.|- .-..++.+.+.|
T Consensus 107 ~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~eel~llk~yg 146 (308)
T PRK00979 107 EARIAAAKYATELGLADRAIYNSINPSIEEEEIEALKESD 146 (308)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeccCCCCHHHHHHHHHhC
Confidence 33 333322111223444443 223466777777
No 230
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.12 E-value=2.5e+02 Score=19.03 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADL 46 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~ 46 (217)
..|+.+.+.++..++..+.-+..+..+...|+..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544
No 231
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.03 E-value=3.4e+02 Score=20.55 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREK--IRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQ 80 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~--~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~ 80 (217)
+......++..|++++.........++..+..|..+. ......+.+++.+...+-....- +-.-..+.+++.+..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~---l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK---LRSGSKPVSPEEKEK 149 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCCCCHHHHHH
Confidence 3445556677777777777777777777777665444 23334444444444433222211 111233466666666
Q ss_pred HHHhhHHH
Q psy12734 81 MVYVDWQS 88 (217)
Q Consensus 81 l~~~~w~~ 88 (217)
+.. .|..
T Consensus 150 ~~~-~~~~ 156 (169)
T PF07106_consen 150 LEK-EYKK 156 (169)
T ss_pred HHH-HHHH
Confidence 533 3443
No 232
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=22.99 E-value=4.6e+02 Score=22.09 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 21 ~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
..+++++....++.|..|..+-....+.....+
T Consensus 51 ~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L 83 (298)
T PF11262_consen 51 KKKEKERLKNLIDKLPEELKKHQEHVEKVKKRL 83 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766555555544444
No 233
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.92 E-value=2.5e+02 Score=18.98 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy12734 41 RWTADLATLEQNR 53 (217)
Q Consensus 41 rw~~~~~~l~~~~ 53 (217)
.|+..+..|+.++
T Consensus 19 e~Q~rlK~Le~qk 31 (83)
T PF14193_consen 19 ELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344433333
No 234
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=22.61 E-value=4.1e+02 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
+.....++...+.+++.++..+++.+.|.+
T Consensus 18 ~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~ 47 (265)
T TIGR00999 18 LAKMAAELKVAQKRVELARKTYEREKKLFE 47 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777777765
No 235
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.57 E-value=5.3e+02 Score=24.54 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+..+..++++.|+.++......|+..+.-+..-+.+..+-.+++.+...+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999999988888888888777777776654
No 236
>KOG3650|consensus
Probab=22.56 E-value=2.8e+02 Score=19.44 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKI 40 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~ 40 (217)
.|+..|-.++-+++..|+-...-+.+..+|.-
T Consensus 56 EEKaRlItQVLELQnTLdDLSqRVdsVKEEnL 87 (120)
T KOG3650|consen 56 EEKARLITQVLELQNTLDDLSQRVDSVKEENL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444444444433333
No 237
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.35 E-value=2.5e+02 Score=19.07 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhC
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADL----ATLEQNRNQLIGACLLSGAFLCYTS 71 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~----~~l~~~~~~l~gd~ll~aa~l~y~g 71 (217)
..+..|+.++...+.+|+.=..+=..|+.-..+=.... ..+..+...++.++.+..+-|+|+.
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE 74 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLE 74 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777766666666655444321111 2334445556666666666566544
No 238
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=22.32 E-value=1.8e+02 Score=17.17 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
.....+-+.|..++...+..-......+..|-.++-+.++.+..+
T Consensus 2 ~~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~l 46 (49)
T PF04325_consen 2 ARLFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRL 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554434444555555555555444443
No 239
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.22 E-value=1.9e+02 Score=17.23 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGR 37 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~ 37 (217)
++.|++-....+.+++-....+..|+.
T Consensus 7 kelLqe~~d~IEqkiedid~qIaeLe~ 33 (46)
T PF08946_consen 7 KELLQEHYDNIEQKIEDIDEQIAELEA 33 (46)
T ss_dssp --------THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHH
Confidence 344445555555555555544444443
No 240
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.19 E-value=3.8e+02 Score=20.85 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 14 LQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
+++.++..+.+++..+..+..+.+...|-.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~ 46 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTT 46 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333
No 241
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.09 E-value=2.8e+02 Score=19.21 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMM 22 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~ 22 (217)
++....++..++.+..+..
T Consensus 15 ~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444443
No 242
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.03 E-value=8e+02 Score=24.52 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=7.4
Q ss_pred CcceeecchhhHHH
Q psy12734 139 HFPLCIDPQTQALK 152 (217)
Q Consensus 139 r~PlliDP~~~~~~ 152 (217)
...+++|-...|..
T Consensus 549 l~~ivv~~~~~a~~ 562 (1164)
T TIGR02169 549 LNNVVVEDDAVAKE 562 (1164)
T ss_pred hCCEEECCHHHHHH
Confidence 34566766544444
No 243
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=21.81 E-value=5.6e+02 Score=22.64 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHhHHHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLG-------REKIRWTADLATLEQNRNQLIGACL 61 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~-------~e~~rw~~~~~~l~~~~~~l~gd~l 61 (217)
...+|++.+...++.|++-....+.+++... +.+.+..+.+..+...+..+.+...
T Consensus 204 ~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~ 266 (379)
T PF04518_consen 204 KLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLS 266 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777666555555554442 4556666777777776766666543
No 244
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.49 E-value=7.6e+02 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 21 ~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
.+.+.+.++++...+...+.+.+...++++.+..
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 245
>KOG0243|consensus
Probab=21.49 E-value=7e+02 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGL 35 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L 35 (217)
.|++.....+++...+++..+..+..+
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 246
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=21.42 E-value=2.2e+02 Score=17.78 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
+...+...+..=+.+-..-+..+.+|+...-.+..++..|...
T Consensus 7 e~n~ac~e~~~~K~~AS~~GrgL~~Wk~~Kp~l~~ki~~l~~~ 49 (57)
T PF10549_consen 7 EYNQACAEYKKEKDIASLCGRGLNRWKWKKPQLEQKIEELEEQ 49 (57)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444445555677889988888888888776443
No 247
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=21.24 E-value=2.8e+02 Score=18.89 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q psy12734 35 LGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 35 L~~e~~rw~~~~~~l~~~~~~l 56 (217)
|+....|..+.+.....+...|
T Consensus 44 l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 44 LDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHhhHHHHHHHHHhHHHHHHHH
Confidence 3333334444444444433333
No 248
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.24 E-value=4.6e+02 Score=21.40 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=18.7
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 31 LISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 31 ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
-+..+..|..+|+..+.+.+..++.+
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~i 185 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERI 185 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888777665
No 249
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.17 E-value=3.3e+02 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.435 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy12734 36 GREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 36 ~~e~~rw~~~~~~l~~~~~~l 56 (217)
......|...-..++..+..+
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSEL 110 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 344456776666666666544
No 250
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.10 E-value=5.1e+02 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy12734 36 GREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAF 73 (217)
Q Consensus 36 ~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l 73 (217)
......-...+..+..+...+++.+.++...+-|+-.+
T Consensus 471 ~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRY 508 (560)
T PF06160_consen 471 NKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRY 508 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555667777777778888888888888888644
No 251
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.02 E-value=5e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
.+...|+.++++.+......+.++..|....+.|.
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 33334444444444444444444444444344444
No 252
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=20.98 E-value=3e+02 Score=19.17 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
..+.++..+++..|++|++-+.+-.+..---+.+.+.++.+++.
T Consensus 74 dmikee~~emkkdleaankrve~q~ekiflmekkfe~lekkyes 117 (122)
T PF05325_consen 74 DMIKEETIEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYES 117 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 34445555555666666655554333333333444555555443
No 253
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.92 E-value=2.9e+02 Score=26.73 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
-++.+|+++.++++..++..+.++++-..-..-|.+++.++++++
T Consensus 427 ~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kf 471 (738)
T TIGR01061 427 TDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQF 471 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666666655555555556555555555
No 254
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.83 E-value=4.9e+02 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLI 32 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll 32 (217)
++.++.+++.++.+++..+.-+
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444443
No 255
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.75 E-value=4.1e+02 Score=20.67 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 20 IMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 20 ~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.++.-++.+..-+..|..+...+++.+..+.+.+
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Aef 49 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEELKDKLIRTTAEI 49 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 256
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.74 E-value=2.3e+02 Score=17.84 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHhHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLG-------REKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~-------~e~~rw~~~~~~l~~~~~~l 56 (217)
-.++..|+.+++.++..+++....+..=+ .=.......+.++..++..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l 58 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKL 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666555322 22234445555555555444
No 257
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.51 E-value=6e+02 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
+..++.+..++...+..++++...+..+..+.+
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 258
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.46 E-value=3.5e+02 Score=19.71 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+..+..+++++..+..++.+......-.+.++.+...+..
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544443
No 259
>KOG0994|consensus
Probab=20.31 E-value=5.6e+02 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
..+..+....+..++.++...++++.|++.-......-.+..++|..+...|.++.
T Consensus 1650 ~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a 1705 (1758)
T KOG0994|consen 1650 GSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQA 1705 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
No 260
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=20.28 E-value=3.9e+02 Score=21.05 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHhHHHHHHHHHH
Q psy12734 29 DKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 29 ~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
+.-+..|..|..+-+..++-++
T Consensus 149 e~~~~~L~~ei~kT~RRVNALE 170 (204)
T PRK00373 149 EKTIQLLADEIEKTKRRVNALE 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444443
No 261
>PRK14625 hypothetical protein; Provisional
Probab=20.23 E-value=2e+02 Score=20.54 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEA 27 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~ 27 (217)
..+.+.+++.+.+++++++++..|..
T Consensus 2 ~nm~~mmkqaq~mQ~km~~~Q~el~~ 27 (109)
T PRK14625 2 KDLGGLMKQAQAMQQKLADAQARLAE 27 (109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666667666666666666553
No 262
>KOG3119|consensus
Probab=20.10 E-value=5.1e+02 Score=21.52 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+.....+.+......-+..|+.|.+.....+++++.++..+
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555556667777777777777777666543
Done!