Query psy12734
Match_columns 217
No_of_seqs 115 out of 1297
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:19:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 6.1E-42 2.1E-46 347.8 20.0 195 2-197 2049-2249(3245)
2 4akg_A Glutathione S-transfera 100.0 1.5E-37 5E-42 314.7 12.8 180 13-196 1882-2068(2695)
3 3vkg_A Dynein heavy chain, cyt 99.7 2.3E-16 7.7E-21 162.0 14.3 180 8-216 2013-2213(3245)
4 4akg_A Glutathione S-transfera 99.2 5.6E-12 1.9E-16 129.1 5.0 80 112-216 1948-2033(2695)
5 2b9c_A Striated-muscle alpha t 84.3 5.8 0.0002 28.9 8.0 48 3-50 74-121 (147)
6 3iv1_A Tumor susceptibility ge 82.2 7.9 0.00027 25.0 8.7 53 4-56 20-72 (78)
7 2jee_A YIIU; FTSZ, septum, coi 80.6 9.4 0.00032 24.8 9.3 24 35-58 53-76 (81)
8 2fxo_A Myosin heavy chain, car 78.8 15 0.0005 26.0 8.7 51 4-54 43-93 (129)
9 2jee_A YIIU; FTSZ, septum, coi 78.0 11 0.00037 24.5 6.7 19 31-49 56-74 (81)
10 3mq7_A Bone marrow stromal ant 77.8 15 0.00051 25.5 9.7 23 32-54 73-95 (121)
11 3efg_A Protein SLYX homolog; x 75.6 13 0.00046 23.9 7.5 47 12-58 10-56 (78)
12 1ic2_A Tropomyosin alpha chain 75.0 14 0.00048 23.8 10.5 49 8-56 12-60 (81)
13 3hnw_A Uncharacterized protein 73.0 23 0.00079 25.4 9.3 50 4-53 70-119 (138)
14 2v71_A Nuclear distribution pr 71.0 24 0.0008 26.8 8.0 50 4-53 36-86 (189)
15 1vp7_A Exodeoxyribonuclease VI 69.2 17 0.0006 24.5 6.3 54 3-56 31-84 (100)
16 1lwu_C Fibrinogen gamma chain; 69.0 23 0.00077 29.3 8.2 50 3-52 6-55 (323)
17 2w6a_A ARF GTPase-activating p 66.1 19 0.00066 21.7 8.1 47 8-54 12-58 (63)
18 3hnw_A Uncharacterized protein 65.9 34 0.0012 24.5 9.3 54 3-56 76-129 (138)
19 1deb_A APC protein, adenomatou 64.6 19 0.00063 21.0 6.9 47 2-48 3-49 (54)
20 3nmd_A CGMP dependent protein 60.8 29 0.00098 21.9 7.3 45 11-55 21-65 (72)
21 3he5_B Synzip2; heterodimeric 60.4 20 0.00069 20.1 6.0 40 9-48 10-49 (52)
22 1lwu_C Fibrinogen gamma chain; 60.4 29 0.00099 28.6 7.3 53 7-59 3-55 (323)
23 3oja_B Anopheles plasmodium-re 60.1 23 0.00078 31.3 7.2 36 24-59 531-566 (597)
24 3cvf_A Homer-3, homer protein 58.9 33 0.0011 22.1 7.3 45 5-49 9-53 (79)
25 2wt7_B Transcription factor MA 57.4 39 0.0013 22.3 6.4 15 10-24 49-63 (90)
26 2pnv_A Small conductance calci 56.5 25 0.00085 19.9 4.6 21 11-31 18-38 (43)
27 1ic2_A Tropomyosin alpha chain 55.8 37 0.0013 21.7 10.4 56 8-63 5-60 (81)
28 3c9i_A Tail needle protein GP2 53.6 73 0.0025 24.4 10.7 64 5-68 80-143 (242)
29 1gd2_E Transcription factor PA 52.0 41 0.0014 21.1 6.0 39 15-53 28-66 (70)
30 1p9i_A Cortexillin I/GCN4 hybr 51.0 23 0.00077 17.7 3.4 23 28-50 4-26 (31)
31 3u0c_A Invasin IPAB, 62 kDa an 50.4 51 0.0017 24.4 6.3 16 64-79 137-152 (201)
32 2q6q_A Spindle POLE BODY compo 49.9 44 0.0015 20.8 7.2 44 10-53 4-47 (74)
33 2efr_A General control protein 49.9 73 0.0025 23.3 9.4 53 7-59 75-127 (155)
34 2b5u_A Colicin E3; high resolu 49.6 98 0.0034 27.1 8.9 25 56-80 364-390 (551)
35 2q6q_A Spindle POLE BODY compo 48.3 47 0.0016 20.6 7.1 50 4-53 12-61 (74)
36 3tul_A Cell invasion protein S 48.3 50 0.0017 23.9 5.8 44 3-46 49-92 (158)
37 1x79_B RAB GTPase binding effe 47.8 65 0.0022 22.2 9.1 59 7-68 4-62 (112)
38 3u1c_A Tropomyosin alpha-1 cha 47.2 61 0.0021 21.7 10.5 47 11-57 11-57 (101)
39 3na7_A HP0958; flagellar bioge 47.1 1E+02 0.0035 24.1 10.6 51 3-53 91-141 (256)
40 3u1c_A Tropomyosin alpha-1 cha 46.5 63 0.0022 21.6 10.7 49 8-56 15-63 (101)
41 4dzo_A Mitotic spindle assembl 46.4 44 0.0015 23.4 5.4 23 9-31 4-26 (123)
42 1oxz_A ADP-ribosylation factor 46.2 92 0.0031 23.4 7.5 69 24-93 49-119 (186)
43 3viq_B Mating-type switching p 46.0 60 0.002 21.2 6.6 54 6-59 5-63 (85)
44 2v4h_A NF-kappa-B essential mo 46.0 69 0.0024 21.9 6.3 55 17-74 25-79 (110)
45 4etp_A Kinesin-like protein KA 45.9 82 0.0028 26.7 8.0 43 11-53 5-47 (403)
46 3kin_B Kinesin heavy chain; mo 45.7 40 0.0014 23.3 5.0 31 13-43 86-116 (117)
47 2efr_A General control protein 44.5 89 0.003 22.8 10.5 38 16-53 91-128 (155)
48 3efg_A Protein SLYX homolog; x 44.4 59 0.002 20.7 6.3 52 6-57 11-62 (78)
49 1joc_A EEA1, early endosomal a 43.9 79 0.0027 22.0 6.9 26 8-33 17-42 (125)
50 3a7p_A Autophagy protein 16; c 42.7 95 0.0032 22.6 10.8 11 79-90 127-137 (152)
51 3swf_A CGMP-gated cation chann 42.4 63 0.0022 20.5 7.6 44 9-55 7-50 (74)
52 1naf_A ADP-ribosylation factor 42.2 98 0.0034 22.6 7.4 69 24-93 33-103 (158)
53 3na7_A HP0958; flagellar bioge 41.9 1.2E+02 0.0042 23.6 10.1 14 171-184 210-223 (256)
54 2yy0_A C-MYC-binding protein; 41.8 52 0.0018 19.3 5.1 29 9-37 19-47 (53)
55 2dfs_A Myosin-5A; myosin-V, in 41.3 1.9E+02 0.0064 28.0 10.5 23 27-49 981-1003(1080)
56 2zqm_A Prefoldin beta subunit 41.3 78 0.0027 21.2 6.9 33 23-55 77-109 (117)
57 4etp_A Kinesin-like protein KA 41.2 86 0.0029 26.5 7.4 58 3-60 4-61 (403)
58 2lf0_A Uncharacterized protein 41.1 80 0.0027 21.9 5.8 44 8-51 9-57 (123)
59 3oja_B Anopheles plasmodium-re 41.1 1.8E+02 0.0062 25.3 10.5 18 85-102 569-586 (597)
60 4emc_A Monopolin complex subun 39.3 62 0.0021 24.4 5.5 40 19-58 9-48 (190)
61 1wt6_A Myotonin-protein kinase 39.2 76 0.0026 20.4 8.1 19 5-23 20-38 (81)
62 1zxa_A CGMP-dependent protein 38.1 59 0.002 20.2 4.3 29 15-43 24-52 (67)
63 2no2_A HIP-I, huntingtin-inter 37.6 94 0.0032 21.1 8.5 17 6-22 26-42 (107)
64 3m9b_A Proteasome-associated A 37.5 60 0.002 25.7 5.4 31 26-56 57-87 (251)
65 1fxk_C Protein (prefoldin); ar 36.7 1E+02 0.0035 21.3 7.7 43 16-58 88-130 (133)
66 3vmx_A Voltage-gated hydrogen 36.3 62 0.0021 18.6 5.2 22 10-31 19-40 (48)
67 3qh9_A Liprin-beta-2; coiled-c 36.2 86 0.0029 20.2 7.1 18 6-23 23-40 (81)
68 2w83_C C-JUN-amino-terminal ki 35.9 59 0.002 20.7 4.1 16 36-51 43-58 (77)
69 2fxo_A Myosin heavy chain, car 35.1 1.1E+02 0.0038 21.2 8.5 44 9-52 13-56 (129)
70 2qyw_A Vesicle transport throu 34.5 1E+02 0.0035 20.5 8.0 8 74-81 76-83 (102)
71 2inr_A DNA topoisomerase 4 sub 34.2 1.1E+02 0.0037 26.9 7.0 40 11-50 456-495 (514)
72 1g6u_A Domain swapped dimer; d 34.0 61 0.0021 17.8 4.0 25 32-56 22-46 (48)
73 3u59_A Tropomyosin beta chain; 33.9 1E+02 0.0035 20.4 10.8 52 8-59 8-59 (101)
74 1xaw_A Occludin; coiled-coil, 33.5 1.3E+02 0.0045 21.5 6.2 41 3-43 53-93 (140)
75 1gmj_A ATPase inhibitor; coile 33.4 99 0.0034 20.1 8.0 29 23-51 51-79 (84)
76 3oja_A Leucine-rich immune mol 32.5 2.3E+02 0.0079 24.0 10.8 50 10-59 415-464 (487)
77 3err_A Fusion protein of micro 32.5 51 0.0017 29.2 4.7 35 1-35 172-206 (536)
78 3gn4_A Myosin-VI; unconvention 32.1 44 0.0015 24.2 3.5 43 17-59 73-115 (148)
79 3bbp_D GRIP and coiled-coil do 31.9 45 0.0015 20.8 3.0 46 11-56 17-62 (71)
80 1m1j_C Fibrinogen gamma chain; 31.8 1.4E+02 0.0048 25.4 7.2 9 137-145 241-249 (409)
81 3htk_A Structural maintenance 31.6 81 0.0028 18.5 7.8 11 14-24 10-20 (60)
82 3ilw_A DNA gyrase subunit A; D 31.4 1.3E+02 0.0045 26.1 7.0 41 10-50 417-457 (470)
83 1fzc_C Fibrin; blood coagulati 31.3 30 0.001 28.5 2.9 45 8-52 3-47 (319)
84 2nov_A DNA topoisomerase 4 sub 30.9 1.1E+02 0.0039 26.7 6.6 44 10-53 431-474 (496)
85 3a7p_A Autophagy protein 16; c 29.8 1.6E+02 0.0055 21.3 8.8 27 30-56 96-122 (152)
86 1go4_E MAD1 (mitotic arrest de 29.8 1.3E+02 0.0044 20.2 5.7 34 22-55 11-44 (100)
87 2v71_A Nuclear distribution pr 29.3 1.8E+02 0.0063 21.8 8.7 39 21-59 47-85 (189)
88 1wt6_A Myotonin-protein kinase 28.7 1.2E+02 0.0041 19.5 7.6 31 13-43 35-65 (81)
89 2zqm_A Prefoldin beta subunit 28.3 1.3E+02 0.0046 20.0 6.4 38 12-49 73-110 (117)
90 3u06_A Protein claret segregat 28.1 2.2E+02 0.0074 24.1 7.8 43 11-53 5-47 (412)
91 2k48_A Nucleoprotein; viral pr 26.6 1.5E+02 0.0052 20.0 8.4 30 4-33 37-66 (107)
92 3u59_A Tropomyosin beta chain; 26.5 1.4E+02 0.0049 19.7 10.5 44 10-53 17-60 (101)
93 4e61_A Protein BIM1; EB1-like 26.1 1.6E+02 0.0053 20.0 6.7 35 21-55 9-43 (106)
94 3m9b_A Proteasome-associated A 25.6 1E+02 0.0036 24.3 4.9 35 22-56 60-94 (251)
95 2ocy_A RAB guanine nucleotide 25.5 1.9E+02 0.0067 20.9 6.6 47 7-53 77-124 (154)
96 3ghg_A Fibrinogen alpha chain; 25.5 1.7E+02 0.0059 25.8 6.6 10 15-24 116-125 (562)
97 1vcs_A Vesicle transport throu 25.3 1.5E+02 0.0052 19.6 7.2 19 18-36 40-58 (102)
98 3nmd_A CGMP dependent protein 25.2 1.3E+02 0.0045 18.9 6.8 25 24-48 41-65 (72)
99 1nkp_B MAX protein, MYC proto- 25.0 1.3E+02 0.0046 18.9 5.2 33 24-56 41-73 (83)
100 3ljm_A Coil Ser L9C; de novo d 24.7 74 0.0025 15.8 4.4 22 14-35 6-27 (31)
101 3ghg_C Fibrinogen gamma chain; 24.7 2.9E+02 0.0098 23.5 7.8 21 7-27 89-109 (411)
102 3cve_A Homer protein homolog 1 24.2 1.4E+02 0.0047 18.8 9.1 44 6-49 4-47 (72)
103 1gk4_A Vimentin; intermediate 24.2 1.4E+02 0.0049 19.0 9.1 46 4-49 3-52 (84)
104 3ghg_A Fibrinogen alpha chain; 23.7 3.3E+02 0.011 24.0 8.0 16 86-101 154-169 (562)
105 4gif_A Polycystic kidney disea 23.6 1.1E+02 0.0037 17.4 5.1 35 2-36 7-41 (45)
106 1fxk_A Prefoldin; archaeal pro 23.5 1.6E+02 0.0055 19.2 5.7 34 13-46 69-102 (107)
107 3jsv_C NF-kappa-B essential mo 23.4 1.7E+02 0.0057 19.4 6.1 56 18-76 4-59 (94)
108 2lw1_A ABC transporter ATP-bin 23.4 1.5E+02 0.0052 19.0 6.4 25 9-33 22-46 (89)
109 2zdi_C Prefoldin subunit alpha 23.4 2E+02 0.0069 20.3 6.8 41 16-56 98-138 (151)
110 2yko_A LINE-1 ORF1P; RNA-bindi 23.3 2.4E+02 0.0081 22.0 6.5 45 9-53 6-50 (233)
111 1fmh_A General control protein 22.7 86 0.0029 15.8 4.0 9 12-20 4-12 (33)
112 3q8t_A Beclin-1; autophagy, AT 22.6 1.7E+02 0.0059 19.2 10.6 28 9-36 25-52 (96)
113 2v66_B Nuclear distribution pr 22.5 1.9E+02 0.0065 19.7 8.7 52 5-56 6-61 (111)
114 1x4t_A Hypothetical protein LO 21.9 1.8E+02 0.0061 19.2 5.9 26 24-49 53-78 (92)
115 3c9i_A Tail needle protein GP2 21.8 2.7E+02 0.0093 21.3 9.1 40 21-60 82-121 (242)
116 3u06_A Protein claret segregat 21.4 3.7E+02 0.013 22.7 8.3 55 5-59 6-60 (412)
117 3twe_A Alpha4H; unknown functi 21.1 84 0.0029 15.1 3.8 16 7-22 6-21 (27)
118 2eqb_B RAB guanine nucleotide 20.7 1.9E+02 0.0067 19.2 10.7 25 3-27 6-30 (97)
119 1nlw_A MAD protein, MAX dimeri 20.5 1.7E+02 0.0059 18.5 5.2 34 23-56 40-73 (80)
120 3aon_A V-type sodium ATPase su 20.3 2.9E+02 0.0098 21.0 7.2 15 35-49 163-177 (217)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=6.1e-42 Score=347.84 Aligned_cols=195 Identities=23% Similarity=0.416 Sum_probs=178.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQM 81 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l 81 (217)
++|+++++|++.|+.+++.++.||++|++|+++|++|+.||++++++++.+...|+|||+++|||++|+|+|+.+||+++
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhhhcccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccC
Q psy12734 82 VYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKN 161 (217)
Q Consensus 82 ~~~~w~~~~~~~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~ 161 (217)
++ .|...+++.+||++.+|++.++|++++++..|+.+|||.|++|+|||+|+.++.||||+||||+||.+|||++++++
T Consensus 2129 ~~-~W~~~l~~~~Ip~s~~~~l~~~L~~~~~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~ 2207 (3245)
T 3vkg_A 2129 MR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADK 2207 (3245)
T ss_dssp HH-HHHHHHHHHTCCCCTTCCHHHHTSCHHHHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGG
T ss_pred HH-HHHHHHHhcCCCCCCCCCHHHHcCCHHHHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccC
Confidence 86 79999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccC----CCcchHHHhhhcccccc--cccCCcccCchh
Q psy12734 162 NLKWNSE----GLPPDELSIQNGILSTR--GCHFPLCIDPQT 197 (217)
Q Consensus 162 ~l~v~~~----~l~~le~ai~~G~iv~~--~~~~p~~idp~~ 197 (217)
++.|+++ |++++|.||++|.+|+. -+.+++++||-+
T Consensus 2208 ~l~v~~~~d~~f~~~LE~ai~fG~pvLienvE~lDP~L~pvL 2249 (3245)
T 3vkg_A 2208 KITKTSFLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVL 2249 (3245)
T ss_dssp CCCCCCC-----HHHHHHHHHHTCCEECCCCC----------
T ss_pred CceEeecCchhHHHHHHHHHHcCCeEEEccccccchhHHHHH
Confidence 8999997 99999999999998864 245556666654
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.5e-37 Score=314.70 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHHHhhhh
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQSNITK 92 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~~~~~~ 92 (217)
+.+.++++++.+++ ++|+++|++|+.||.+++++++.+...|+||++++|||++|+|+|+.+||+++++ .|...+++
T Consensus 1882 e~~~~v~~l~~~l~--~~Li~~L~~E~~RW~~~~~~~~~~~~~l~Gd~ll~aafisY~G~f~~~~R~~l~~-~W~~~~~~ 1958 (2695)
T 4akg_A 1882 ESVLKVNELNKTLS--ISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLV-ILKRLLGK 1958 (2695)
T ss_dssp HHC-----------------CTTHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHh
Confidence 33334555555555 7899999999999999999999999999999999999999999999999999986 79999999
Q ss_pred cccccCCCCCcccccCCHHHHHHHHHcCCCCCchhhhhhHHhhcC-CCcceeecchhhHHHHHHhccccCccccccC---
Q psy12734 93 LSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRG-CHFPLCIDPQTQALKWIRNREDKNNLKWNSE--- 168 (217)
Q Consensus 93 ~~i~~~~~~~~~~~L~~~~~~~~W~~~glp~d~~~~en~ii~~~~-~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~--- 168 (217)
.+||++.+|++.++|++++++..|+.+|||.|++|+|||+|+.++ .||||+||||+||.+|||+++ ++++.|+++
T Consensus 1959 ~~ip~~~~~~~~~~L~~~~~i~~W~~~GLP~D~~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~~-~~~l~v~~~~d~ 2037 (2695)
T 4akg_A 1959 FAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTVLLSFLEE 2037 (2695)
T ss_dssp TTCCCCSSCCHHHHHCCHHHHHHHHHHTCCSCHHHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHHH-GGGEEEECTTSS
T ss_pred cCCCCCCCCCHHHHhcCHHHHHHHHhcCCCCCchhHhHHHHHhcccccCceEECcHHHHHHHHHHHh-cCCceEeeCCcH
Confidence 999999999999999999999999999999999999999999997 999999999999999999985 466999997
Q ss_pred -CCcchHHHhhhcccccc--cccCCcccCch
Q psy12734 169 -GLPPDELSIQNGILSTR--GCHFPLCIDPQ 196 (217)
Q Consensus 169 -~l~~le~ai~~G~iv~~--~~~~p~~idp~ 196 (217)
|++++|.||++|.+|+. .+.+++++||-
T Consensus 2038 ~f~~~lE~ai~~G~pvLien~E~lDp~L~pv 2068 (2695)
T 4akg_A 2038 GFVKRLENAIRFGSVVIIQDGEFFDPIISRL 2068 (2695)
T ss_dssp THHHHHHHHHHTTCEEEESCSSSCCSTTHHH
T ss_pred HHHHHHHHHHHcCCeEEEccccccchhHHHH
Confidence 89999999999998865 34444444444
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.68 E-value=2.3e-16 Score=161.96 Aligned_cols=180 Identities=20% Similarity=0.337 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHhhHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWEFRQQMVYVDWQ 87 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~~r~~l~~~~w~ 87 (217)
.++.+.++++++.++.+|+.++..++.++++....++++++...+.+.|..++..+...+..+..|..++..| +.||.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E--k~RW~ 2090 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE--RGRWE 2090 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccHH
Confidence 3566777778888888888888888888888888888888888888999999999999999999999999999 67999
Q ss_pred Hhhhhcc----------------cccCCCCCcccccCCHHHHHHHHH----cCCCC-CchhhhhhHHhhcCCCcceeecc
Q psy12734 88 SNITKLS----------------IPIVSDFRLEKELCDDVMISQWNS----EGLPP-DELSIQNGILSTRGCHFPLCIDP 146 (217)
Q Consensus 88 ~~~~~~~----------------i~~~~~~~~~~~L~~~~~~~~W~~----~glp~-d~~~~en~ii~~~~~r~PlliDP 146 (217)
+.+..++ +.|.++|+-. .+...+..|.. .|+|. .++++.+. +.||
T Consensus 2091 ~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~---~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~-----------L~~~ 2156 (3245)
T 3vkg_A 2091 QQSENFNTQMSTVVGDVVLASAFLAYIGFFDQN---FRTDLMRKWMIRLDSVGIKFKSDLSVPSF-----------LSKP 2156 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHH---HHHHHHHHHHHHHHHHTCCCCTTCCHHHH-----------TSCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhcCCCCCCCCCHHHH-----------cCCH
Confidence 8877653 2233333321 12233567863 46665 33554432 2566
Q ss_pred hhhHHHHHHhccccCccccccCCCcchHHHhhhcccccccccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734 147 QTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNPKVNQ 216 (217)
Q Consensus 147 ~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~~~~p~~idp~~~~~~~~~~~~~~~~l~~~~ 216 (217)
. ....|-.+ |||.|+.|++||+|+..+.+||++||||+||++||++++++++|+|+.
T Consensus 2157 ~-~i~~W~~~------------GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~ 2213 (3245)
T 3vkg_A 2157 E-ERLNWHAN------------SLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTS 2213 (3245)
T ss_dssp H-HHHHHHHT------------TCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCC
T ss_pred H-HHHHHHhC------------CCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEee
Confidence 4 45567543 999999999999999999999999999999999999999988899875
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.21 E-value=5.6e-12 Score=129.14 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=60.0
Q ss_pred HHHHHHH----cCCCC-CchhhhhhHHhhcCCCcceeecchhhHHHHHHhccccCccccccCCCcchHHHhhhccccccc
Q psy12734 112 MISQWNS----EGLPP-DELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELSIQNGILSTRG 186 (217)
Q Consensus 112 ~~~~W~~----~glp~-d~~~~en~ii~~~~~r~PlliDP~~~~~~wl~~~~~~~~l~v~~~~l~~le~ai~~G~iv~~~ 186 (217)
.+..|.. .++|. .++++.+. +.||. ....|..+ |||.|+.|++||+++..+
T Consensus 1948 l~~~W~~~~~~~~ip~~~~~~~~~~-----------L~~~~-~i~~W~~~------------GLP~D~~s~eNaii~~~s 2003 (2695)
T 4akg_A 1948 MLVILKRLLGKFAVKYDVNYRFIDY-----------LVTLD-EKMKWLEC------------GLDKNDYFLENMSIVMNS 2003 (2695)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCHHHH-----------HCCHH-HHHHHHHH------------TCCSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHH-----------hcCHH-HHHHHHhc------------CCCCCchhHhHHHHHhcc
Confidence 3467863 46664 33444432 25664 45567544 999999999999999987
Q ss_pred -ccCCcccCchhhHHHHHHhhcccCCCccCC
Q psy12734 187 -CHFPLCIDPQTQALKWIRNREDKNNPKVNQ 216 (217)
Q Consensus 187 -~~~p~~idp~~~~~~~~~~~~~~~~l~~~~ 216 (217)
.+||++||||+||++||+++++ ++|+|++
T Consensus 2004 ~~r~PL~IDPq~qa~~wik~~~~-~~l~v~~ 2033 (2695)
T 4akg_A 2004 QDAVPFLLDPSSHMITVISNYYG-NKTVLLS 2033 (2695)
T ss_dssp CSSEEEEECSSTTHHHHHHHHHG-GGEEEEC
T ss_pred cccCceEECcHHHHHHHHHHHhc-CCceEee
Confidence 9999999999999999999864 4688875
No 5
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.35 E-value=5.8 Score=28.94 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
+|+++.+....++.++..+..+.+.+..-+..|..++..-.+.+..++
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 566666666667777777777777776666666666666555555544
No 6
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=82.25 E-value=7.9 Score=24.98 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
|+..-.|.+-|...-+++..--...+.++..|..|...+...++.++.+.+.|
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555666666666666666666666555443
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.65 E-value=9.4 Score=24.81 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=11.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 35 LGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 35 L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
|..+..++++.....+.++..|.|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=78.83 E-value=15 Score=25.96 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
+.....++..|...++.-...+..|......|..........+..+..++.
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444443
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.01 E-value=11 Score=24.50 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.1
Q ss_pred HHHhHHHHHhHHHHHHHHH
Q psy12734 31 LISGLGREKIRWTADLATL 49 (217)
Q Consensus 31 ll~~L~~e~~rw~~~~~~l 49 (217)
-...|..|+..|+..+..+
T Consensus 56 en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 56 ENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444
No 10
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.84 E-value=15 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=9.2
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 32 ISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 32 l~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
+..|.+|+..|.+++.+...+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=75.65 E-value=13 Score=23.85 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
..++.++..++.|+.-.+..+..|.....+=+..+..++.++..|.+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888777778888777766543
No 12
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.05 E-value=14 Score=23.78 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
..+++....++..++.++..++.-...++.+....+..+..++..++..
T Consensus 12 k~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 12 KLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444433
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.95 E-value=23 Score=25.36 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
|-+...+.+.|+.+++.....+...+.-+..+..+.+.-...+.+++.+.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333333333333333333333
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.03 E-value=24 Score=26.81 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=35.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQ-KLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 4 y~~~~~e~~-~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
|....++.+ .|+.++..++.+......-+..|..|...|+.++.......
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 46667777778888888888888888888887777776653
No 15
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=69.21 E-value=17 Score=24.54 Aligned_cols=54 Identities=19% Similarity=0.033 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.|++++.+.+.+-.+++.-.-.|+.+-.+...-..-....+..++..+.+++.|
T Consensus 31 sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888887777788777777776666677777777777776666
No 16
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.00 E-value=23 Score=29.28 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
+......++.+++..+.....++...+..+..+...+.+.++.+.+++..
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666655555555555555443
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=66.11 E-value=19 Score=21.73 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRN 54 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~ 54 (217)
++|.-+++..++..++|++..-+.-..|+.|+..-+..+..++.+-.
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 35556667777778888888888888888888888888887776543
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.90 E-value=34 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+++....+.+.++.++......+..+..-+..+..+..+.+..+..++.+...|
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444444444444444444444444444444444333
No 19
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.59 E-value=19 Score=21.01 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
+.|+...++++.|+.+-.-..+.|+--..-+..|+.|--.-++-+..
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 57889999999888888777777777666677666665544443333
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.83 E-value=29 Score=21.95 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+..|+..+......|..-+.+|..|+.++..-...+.+|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666666666666666666666665544
No 21
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.43 E-value=20 Score=20.06 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
+++..|..+--..++.-+..++++..|.+|..|..+.+..
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555666677888888888888776644
No 22
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.40 E-value=29 Score=28.64 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
+.+....+..++.+.+..+..+...+..|+..+..-+.++.+++.++..+...
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888888887777788877777666543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.07 E-value=23 Score=31.25 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
..+.-++.++.++.|..+++...++.+.+...+.-+
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 333333455555566666666666666666555444
No 24
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.90 E-value=33 Score=22.07 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
+++..+.+.++.+-...+.+++.++.-+..-..+..+-+..+..+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666665555555555444444443
No 25
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.37 E-value=39 Score=22.34 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRR 24 (217)
Q Consensus 10 e~~~l~~~~~~~~~k 24 (217)
++..|+.+.......
T Consensus 49 q~~~LE~e~~~L~~e 63 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQ 63 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 26
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=56.50 E-value=25 Score=19.86 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKL 31 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~l 31 (217)
-+.+++++...+.||+.....
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=55.77 E-value=37 Score=21.68 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLS 63 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~ 63 (217)
......++.+...+..+++.++.-+.........-...+..++.++..+-.+.--+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777776665443
No 28
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=53.65 E-value=73 Score=24.40 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLC 68 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~ 68 (217)
.+...++..++.++..-+.|+..++.-+..++.....-+..+..++.+...+.|.+--.+..|+
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Confidence 3456677788888888888999999999999988888888888888888888777754444433
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.98 E-value=41 Score=21.05 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 15 QEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 15 ~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+..+..++.++...+.....+..|.......+..+..+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554443
No 30
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=51.01 E-value=23 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 28 ADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 28 a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
...++.+|+.|....+.+++++-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777776666666553
No 31
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=50.37 E-value=51 Score=24.40 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=8.4
Q ss_pred HHHHhhhCCCCHHHHH
Q psy12734 64 GAFLCYTSAFTWEFRQ 79 (217)
Q Consensus 64 aa~l~y~g~l~~~~r~ 79 (217)
.+.++-+.|=.|+|.+
T Consensus 137 q~kLs~L~P~dP~Y~K 152 (201)
T 3u0c_A 137 QTRLSELDPESPEKKK 152 (201)
T ss_dssp HHHHHTSCSSCTTHHH
T ss_pred HHHHhcCCCCCCcccc
Confidence 3444555555566553
No 32
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=49.93 E-value=44 Score=20.77 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+-+.|...+.+.+..+++...++.+|.+.+..+.+--..++...
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888888888888888887776666665544
No 33
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=49.85 E-value=73 Score=23.26 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
...++..|...++.+..+-+.|++-+..|+.+..+..+.+..-+.++..+..+
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~e 127 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777888888888877777777776666666555443
No 34
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.56 E-value=98 Score=27.07 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=12.7
Q ss_pred HHHHHHHH-HHHHhhhC-CCCHHHHHH
Q psy12734 56 LIGACLLS-GAFLCYTS-AFTWEFRQQ 80 (217)
Q Consensus 56 l~gd~ll~-aa~l~y~g-~l~~~~r~~ 80 (217)
.++|.+.. ..|.+|.- ++....|..
T Consensus 364 ~~~~~~~~~~~f~~~n~~p~~~Gh~~w 390 (551)
T 2b5u_A 364 TLADAIAEIKQFNRFAHDPMAGGHRMW 390 (551)
T ss_dssp HHHHHHHHHHHHGGGTTCTTSTHHHHH
T ss_pred HHHHHHHhhhhhhhhccChhhccchhh
Confidence 45554433 34555664 666664433
No 35
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=48.30 E-value=47 Score=20.63 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
..+.-.|+..|.--+.....||..-..+-..|+++....+.+...+++..
T Consensus 12 l~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 12 LREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 34445566666667777778888888999999888888887777776544
No 36
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=48.30 E-value=50 Score=23.88 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADL 46 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~ 46 (217)
+|+.+..+.+..-+.++..-.++..|+.-+..++...++-+.++
T Consensus 49 eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 49 EFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666655544444333
No 37
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.82 E-value=65 Score=22.15 Aligned_cols=59 Identities=17% Similarity=-0.006 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12734 7 AMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLC 68 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~ 68 (217)
.-.+.+.|+.....++..|++....-+.|++. |..+.++...+...|.+.+--+...+.
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~ 62 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLE 62 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888775 999899998888888777655555543
No 38
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=47.19 E-value=61 Score=21.65 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
...|+.+...+..+.+.++.-+..+......-...+..+..++..+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.07 E-value=1e+02 Score=24.12 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+|.....+++.++.+...++..+..+..-+..+..+....+..+..++..+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444444444444444444444443333
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.50 E-value=63 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
..+++....+...++.++..++.-...++.+....+..+..++..++..
T Consensus 15 k~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 15 KLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555444444443
No 41
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=46.38 E-value=44 Score=23.37 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKL 31 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~l 31 (217)
+|++.|+++++.++.+.+|.+..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKev 26 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEV 26 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777666666655544
No 42
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=46.19 E-value=92 Score=23.42 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCH-HH-HHHHHHhhHHHhhhhc
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTW-EF-RQQMVYVDWQSNITKL 93 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~-~~-r~~l~~~~w~~~~~~~ 93 (217)
-|+.|.+|++...++-++=.+++.+....++.+-+.+.+...+++...+=.. .. ..++++ .....|++.
T Consensus 49 DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~-eL~~~Ck~~ 119 (186)
T 1oxz_A 49 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK-ELYQRCERM 119 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHH-HHHHHHHHH
Confidence 4899999999998777666777888888888888999888888876532111 01 234444 355555544
No 43
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=46.00 E-value=60 Score=21.18 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGL-----GREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L-----~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
....+++.|+.+.+.+...+..+...+... -.++.+--+.+++++.--+.|+|-
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~ 63 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGK 63 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555666666666666555555433322 133344445555555555555444
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.99 E-value=69 Score=21.91 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFT 74 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~ 74 (217)
++..++.+|..|+..+.....+..+.+....+....++.+ ..|-+-.-+|.+-|-
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I---~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV---PVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHc
Confidence 4556666777777777776666666666666555433322 122333345555444
No 45
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.88 E-value=82 Score=26.65 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
++.++.+++.++.+.+..+..++.+..+..+..+.+.+-+...
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 47 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR 47 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555554444443333
No 46
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=45.70 E-value=40 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
.+.++++....+++..+..+..|+.|..+|.
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556666667777777888888888874
No 47
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.55 E-value=89 Score=22.77 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.+.+.+.+++...++-+..|..+...++..+..+...+
T Consensus 91 ~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 91 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443333333333
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.45 E-value=59 Score=20.71 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLI 57 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~ 57 (217)
....++..||.+++=.+..++..+..+..-..+..+.+..+..+..++..+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888888888888888888888888888888887776653
No 49
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.94 E-value=79 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
..|++.|+.++.+.+.+++.+...+.
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444333
No 50
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.74 E-value=95 Score=22.55 Aligned_cols=11 Identities=27% Similarity=0.592 Sum_probs=6.5
Q ss_pred HHHHHhhHHHhh
Q psy12734 79 QQMVYVDWQSNI 90 (217)
Q Consensus 79 ~~l~~~~w~~~~ 90 (217)
..++. ||....
T Consensus 127 ~~LV~-RWM~rk 137 (152)
T 3a7p_A 127 SQLVA-RWLKKT 137 (152)
T ss_dssp HHHHH-HHHHHH
T ss_pred HHHHH-HHHHHH
Confidence 34554 788754
No 51
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.43 E-value=63 Score=20.45 Aligned_cols=44 Identities=9% Similarity=0.251 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
..++.|+..++.++.|+.+ |+....+-..+.++.+..++.....
T Consensus 7 EKv~~LE~sld~LQTrfAR---LLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFAR---ILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555566666555543 3333344444555555555555544
No 52
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=42.23 E-value=98 Score=22.60 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHH-H-HHHHHHhhHHHhhhhc
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWE-F-RQQMVYVDWQSNITKL 93 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~-~-r~~l~~~~w~~~~~~~ 93 (217)
-|++|.+|++...++-++=.+++.+....++.+-+.+.+...+++...+=... . ..+++. .....|++.
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~-eL~~~Ck~~ 103 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMK-ELYQRCERM 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHH-HHHHHHHTH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHH-HHHHHHHHH
Confidence 48999999999987776667778888888888889998888888766432111 1 224444 355555544
No 53
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.89 E-value=1.2e+02 Score=23.62 Aligned_cols=14 Identities=0% Similarity=-0.401 Sum_probs=7.3
Q ss_pred cchHHHhhhccccc
Q psy12734 171 PPDELSIQNGILST 184 (217)
Q Consensus 171 ~~le~ai~~G~iv~ 184 (217)
|+.-..|..|.-+.
T Consensus 210 pq~~~~i~~~~~Iv 223 (256)
T 3na7_A 210 DKIYTEVLTSGDMI 223 (256)
T ss_dssp HHHHHHHHHSSSCE
T ss_pred HHHHHHHHCCCCEE
Confidence 45555566554333
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.80 E-value=52 Score=19.31 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGR 37 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~ 37 (217)
.+++.|+.+.++++.+++.....+..|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444433
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.32 E-value=1.9e+02 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 27 AADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 27 ~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
.++..+..|+.|...-.+.+.++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333333
No 56
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.29 E-value=78 Score=21.20 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 23 RRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 23 ~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
.+++..+..++.|..........+.+++.++..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 57
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.23 E-value=86 Score=26.52 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
+-+....+++.++++.++.+..++.++..+..+..+...=+..-..+.+++..+-|.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3455667777777777777777777777777777666665555566666666665553
No 58
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=41.11 E-value=80 Score=21.90 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHhHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADK-----LISGLGREKIRWTADLATLEQ 51 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~-----ll~~L~~e~~rw~~~~~~l~~ 51 (217)
.+|++.|..+++.+..++..|.. ++..+..|.+....+++.++.
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665542 444444444444444444443
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.08 E-value=1.8e+02 Score=25.32 Aligned_cols=18 Identities=6% Similarity=-0.069 Sum_probs=6.9
Q ss_pred hHHHhhhhcccccCCCCC
Q psy12734 85 DWQSNITKLSIPIVSDFR 102 (217)
Q Consensus 85 ~w~~~~~~~~i~~~~~~~ 102 (217)
.+...++...-....+|+
T Consensus 569 ~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 569 LKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 355555554444444443
No 60
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.34 E-value=62 Score=24.40 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 19 DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 19 ~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
..++.+|+.|..++.+|..|.....++++....+++.|-.
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777666666665555555433
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.22 E-value=76 Score=20.43 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMR 23 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~ 23 (217)
+.-++-++-+.+++..+..
T Consensus 20 eaEIqAKQ~i~EELs~vr~ 38 (81)
T 1wt6_A 20 EEEVLTRQSLSREMEAIRT 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 62
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.12 E-value=59 Score=20.19 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 15 QEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 15 ~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
...+.+++..|......+..|.+++.+..
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555656666666655555544
No 63
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.58 E-value=94 Score=21.06 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMM 22 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~ 22 (217)
+....+..|+.++..++
T Consensus 26 e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 26 DLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555533
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.50 E-value=60 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 26 EAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 26 ~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
...+..+..|+....+..+.+..+..++..|
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444
No 65
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.66 E-value=1e+02 Score=21.26 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIG 58 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~g 58 (217)
+..+-.++|++.++..++.+.....+-.+.+..+...++.+.+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566666666666777766666666666666666655543
No 66
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.35 E-value=62 Score=18.63 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKL 31 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~l 31 (217)
++..|+....+.++.+++.+++
T Consensus 19 kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHH
Confidence 3333333333333333333333
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.23 E-value=86 Score=20.17 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMR 23 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~ 23 (217)
..++|+..|.-++.+++.
T Consensus 23 ~L~qEi~~Lr~kv~elEn 40 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELEN 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555544444443
No 68
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.94 E-value=59 Score=20.69 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHHHHH
Q psy12734 36 GREKIRWTADLATLEQ 51 (217)
Q Consensus 36 ~~e~~rw~~~~~~l~~ 51 (217)
..|+.-.+..+..+..
T Consensus 43 t~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3444444444444433
No 69
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.14 E-value=1.1e+02 Score=21.22 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
.+...++.++..+..++.........|.............+...
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666555555555555444433
No 70
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.54 E-value=1e+02 Score=20.55 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.8
Q ss_pred CHHHHHHH
Q psy12734 74 TWEFRQQM 81 (217)
Q Consensus 74 ~~~~r~~l 81 (217)
++.+|..+
T Consensus 76 p~s~R~~~ 83 (102)
T 2qyw_A 76 PLTFRNPM 83 (102)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 34555444
No 71
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=34.19 E-value=1.1e+02 Score=26.92 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
+++++++.++.+.+++..+.++++-..-..-|.+.+.++.
T Consensus 456 ~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~ 495 (514)
T 2inr_A 456 IVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIK 495 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333334444444433
No 72
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.01 E-value=61 Score=17.79 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 32 ISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 32 l~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+..|++|.+-...++..++.+++.+
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555554443
No 73
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.87 E-value=1e+02 Score=20.41 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
......|+.+...+..+.+.++.-+..+......-...+..++.++..+-.+
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555444444444555555555444443
No 74
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=33.52 E-value=1.3e+02 Score=21.49 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
.|..-..|...|.+++..+.+++......+..|...-.+++
T Consensus 53 ~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~ 93 (140)
T 1xaw_A 53 NFDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYM 93 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 57777788889999999999999888888888764444444
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.43 E-value=99 Score=20.06 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q psy12734 23 RRLEAADKLISGLGREKIRWTADLATLEQ 51 (217)
Q Consensus 23 ~kl~~a~~ll~~L~~e~~rw~~~~~~l~~ 51 (217)
..|+.=...|..|+.++.|++..+.+++.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555666666666666666666543
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.52 E-value=2.3e+02 Score=24.02 Aligned_cols=50 Identities=10% Similarity=-0.088 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
..+..+...++.+...+++++..+..+.+.+.+.++.+.++..+..+...
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 33334444445555555566666666666677766666666666555333
No 77
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=32.51 E-value=51 Score=29.16 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12734 1 MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGL 35 (217)
Q Consensus 1 ~~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L 35 (217)
|..|++..+++.++.++++.++..+..++.-+..+
T Consensus 172 ~~~Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 172 QLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999888877665
No 78
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=32.11 E-value=44 Score=24.24 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 17 ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 17 ~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
.+......+.....++..|.+.++.|...+..++..++.++..
T Consensus 73 kv~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~k 115 (148)
T 3gn4_A 73 KVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAK 115 (148)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777888888888889999999999888877554
No 79
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.89 E-value=45 Score=20.81 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
++.|..++..++.+++....++..-+.-..|..++..-++.++..+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777777766554
No 80
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.75 E-value=1.4e+02 Score=25.38 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=4.4
Q ss_pred CCCcceeec
Q psy12734 137 GCHFPLCID 145 (217)
Q Consensus 137 ~~r~PlliD 145 (217)
....-|.||
T Consensus 241 ~~~~eL~I~ 249 (409)
T 1m1j_C 241 TLPYALRIE 249 (409)
T ss_dssp SCCEEEEEE
T ss_pred CCCEEEEEE
Confidence 444445554
No 81
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.57 E-value=81 Score=18.51 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy12734 14 LQEETDIMMRR 24 (217)
Q Consensus 14 l~~~~~~~~~k 24 (217)
++..+..+..+
T Consensus 10 ~~~~~~~~~~~ 20 (60)
T 3htk_A 10 LENQVEELTEK 20 (60)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 82
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=31.43 E-value=1.3e+02 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLE 50 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~ 50 (217)
+..+++++.+++..+++..+.++++-..-..-|.+.+.++.
T Consensus 417 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 457 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIV 457 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443444444444443
No 83
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=31.30 E-value=30 Score=28.46 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q psy12734 8 MTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQN 52 (217)
Q Consensus 8 ~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~ 52 (217)
..|+..+|..+...+..++..+.+++.++.++...+..+.+++.+
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777777766666555555555443
No 84
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=30.89 E-value=1.1e+02 Score=26.67 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+..+++++.++.+.+++..+.++++-..-..-|.+.+.++.+++
T Consensus 431 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 474 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKF 474 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666554444555555555555443
No 85
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.83 E-value=1.6e+02 Score=21.34 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=12.2
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 30 KLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 30 ~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+.+..+.+|+...+-++..++.++..+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 86
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.77 E-value=1.3e+02 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 22 MRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 22 ~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
...+...+.-++.|..|..++....+.++.++..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777888889999999888888877755
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.26 E-value=1.8e+02 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 21 ~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
++..|+.+++-...|.....+....+..++.++.....+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777776555
No 88
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.73 E-value=1.2e+02 Score=19.51 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWT 43 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~ 43 (217)
..+......+.+|..|+.....|..|..+-.
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433333
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.35 E-value=1.3e+02 Score=19.98 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 12 QKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 12 ~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
..|+.+.+.+...++..+.-+..+..+...|+..+...
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666555543
No 90
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.07 E-value=2.2e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 11 RQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 11 ~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
...|+.++.+...+++..++-++.+..+..+-.+++.+.+...
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r 47 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMER 47 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444433333
No 91
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.59 E-value=1.5e+02 Score=20.01 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
..+...|+...|.++..+..||..|++-..
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555555555555555443
No 92
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.54 E-value=1.4e+02 Score=19.70 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 10 e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+++....+...++.++..++.-...++.+....+..+..++..+
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333333333333333333333333
No 93
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.11 E-value=1.6e+02 Score=20.02 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Q psy12734 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNRNQ 55 (217)
Q Consensus 21 ~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~ 55 (217)
+++.|..++.-+..|..+...|+.+++.++++.+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666777777777777777766543
No 94
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.63 E-value=1e+02 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 22 MRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 22 ~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+..+.........|..++.+-..++..++.+++.|
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444444444445555555555444
No 95
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.54 E-value=1.9e+02 Score=20.93 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRL-EAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl-~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
+-.++..++.+++.+...| +.|+.++..-..+....+..+..++..+
T Consensus 77 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666543 6677777766666666666666655544
No 96
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.48 E-value=1.7e+02 Score=25.76 Aligned_cols=10 Identities=10% Similarity=0.537 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy12734 15 QEETDIMMRR 24 (217)
Q Consensus 15 ~~~~~~~~~k 24 (217)
++.++.++.+
T Consensus 116 RRrIqyLKek 125 (562)
T 3ghg_A 116 RSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 97
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.31 E-value=1.5e+02 Score=19.63 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy12734 18 TDIMMRRLEAADKLISGLG 36 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~ 36 (217)
+..++..|+.|+.+|..++
T Consensus 40 i~~ie~~l~EA~ell~qMe 58 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMD 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.17 E-value=1.3e+02 Score=18.86 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHH
Q psy12734 24 RLEAADKLISGLGREKIRWTADLAT 48 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~ 48 (217)
.++..+..+..+.++....+..+.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444333333
No 99
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.02 E-value=1.3e+02 Score=18.90 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
-|..|...|..|..+..+....++.+..+...|
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655555555554443
No 100
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.74 E-value=74 Score=15.83 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy12734 14 LQEETDIMMRRLEAADKLISGL 35 (217)
Q Consensus 14 l~~~~~~~~~kl~~a~~ll~~L 35 (217)
|+...+..+.+|++.++-+..|
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 101
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.67 E-value=2.9e+02 Score=23.49 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMMRRLEA 27 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~~kl~~ 27 (217)
++.|+..++.-+......+..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~ 109 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRY 109 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444333333333
No 102
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.23 E-value=1.4e+02 Score=18.75 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 6 GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 6 ~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
++..+.+.++.+-...+.++..++.-+..-..+..+-+..+..+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665555555544444444
No 103
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.23 E-value=1.4e+02 Score=18.97 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 4 YVGAMTERQKLQEETDIMMRRLE----AADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 4 y~~~~~e~~~l~~~~~~~~~kl~----~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
.+.....+..|+..+..++.+.+ .+...+..++.+..+-.......
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777766543 33444455555544444444333
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.70 E-value=3.3e+02 Score=24.03 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=9.0
Q ss_pred HHHhhhhcccccCCCC
Q psy12734 86 WQSNITKLSIPIVSDF 101 (217)
Q Consensus 86 w~~~~~~~~i~~~~~~ 101 (217)
.-..++.+..||...+
T Consensus 154 IdiqirsCKgsCsr~~ 169 (562)
T 3ghg_A 154 IDIKIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHGGGTBSCCC
T ss_pred HHHHHHhccccccchh
Confidence 4444566666666543
No 105
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=23.60 E-value=1.1e+02 Score=17.35 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12734 2 SKYVGAMTERQKLQEETDIMMRRLEAADKLISGLG 36 (217)
Q Consensus 2 ~~y~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~ 36 (217)
++|....+++..||.-+.....+++.+-.-+..++
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~E 41 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLE 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887777776665555443
No 106
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.45 E-value=1.6e+02 Score=19.22 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy12734 13 KLQEETDIMMRRLEAADKLISGLGREKIRWTADL 46 (217)
Q Consensus 13 ~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~ 46 (217)
.|+.+.+.+...++..+.-+..+..+...|+..+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555443
No 107
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.45 E-value=1.7e+02 Score=19.41 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHH
Q psy12734 18 TDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYTSAFTWE 76 (217)
Q Consensus 18 ~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ll~aa~l~y~g~l~~~ 76 (217)
+..+..+|..|+..+...+...+..++.....+...+.+ ..+-+-.-+|..-|-.+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i---~vLk~Qv~IY~~DF~aE 59 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV---PVLKAQADIYKADFQAE 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666666544433 22334445566555433
No 108
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.43 E-value=1.5e+02 Score=18.99 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLIS 33 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~ 33 (217)
++.+.|+.+++.++.++......+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666655554
No 109
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.39 E-value=2e+02 Score=20.33 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 16 EETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 16 ~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
+..+-+++|++.++..++.+......-.+.+..++..++.+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555554443
No 110
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.32 E-value=2.4e+02 Score=21.99 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNR 53 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~ 53 (217)
.+++.+++.+..++.+++.........+.....-++++.++.+..
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555556666665555555444444444444445555554443
No 111
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.72 E-value=86 Score=15.83 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy12734 12 QKLQEETDI 20 (217)
Q Consensus 12 ~~l~~~~~~ 20 (217)
..|+.+++.
T Consensus 4 aqlekevaq 12 (33)
T 1fmh_A 4 AQLEKEVAQ 12 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 112
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.58 E-value=1.7e+02 Score=19.24 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy12734 9 TERQKLQEETDIMMRRLEAADKLISGLG 36 (217)
Q Consensus 9 ~e~~~l~~~~~~~~~kl~~a~~ll~~L~ 36 (217)
.+...++.+-+.+..-|..++.-...|.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444443
No 113
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.45 E-value=1.9e+02 Score=19.74 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADK----LISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~----ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.+.......|..+++....|+..+.. .+..|+.|.......-..+...+..|
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666543 45666666666665555555555444
No 114
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.93 E-value=1.8e+02 Score=19.18 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHH
Q psy12734 24 RLEAADKLISGLGREKIRWTADLATL 49 (217)
Q Consensus 24 kl~~a~~ll~~L~~e~~rw~~~~~~l 49 (217)
++.....-|..|-.|+.+|+..+.+|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777778888888888998777544
No 115
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.75 E-value=2.7e+02 Score=21.25 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy12734 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60 (217)
Q Consensus 21 ~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd~ 60 (217)
-+.++..++.-+..-+.....=...+..++.++....++.
T Consensus 82 He~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i 121 (242)
T 3c9i_A 82 HEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEI 121 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccc
Confidence 3445555555555444444444444455555554444443
No 116
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.38 E-value=3.7e+02 Score=22.66 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy12734 5 VGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59 (217)
Q Consensus 5 ~~~~~e~~~l~~~~~~~~~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l~gd 59 (217)
.....+...++++.++.+++++.....+..+..++..=+..-.++.+.+..+-|.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445566666666666666666666666666655555444445555555555444
No 117
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.08 E-value=84 Score=15.13 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12734 7 AMTERQKLQEETDIMM 22 (217)
Q Consensus 7 ~~~e~~~l~~~~~~~~ 22 (217)
..+|.+.|++++....
T Consensus 6 lykeledlqerlrklr 21 (27)
T 3twe_A 6 LYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 118
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.75 E-value=1.9e+02 Score=19.19 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12734 3 KYVGAMTERQKLQEETDIMMRRLEA 27 (217)
Q Consensus 3 ~y~~~~~e~~~l~~~~~~~~~kl~~ 27 (217)
.|+.+..++..|+.+.......+.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKR 30 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4556666666666655555544444
No 119
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.50 E-value=1.7e+02 Score=18.48 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q psy12734 23 RRLEAADKLISGLGREKIRWTADLATLEQNRNQL 56 (217)
Q Consensus 23 ~kl~~a~~ll~~L~~e~~rw~~~~~~l~~~~~~l 56 (217)
.-|..|...|..|..+..+.....+.+..+...|
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776666666665544
No 120
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.35 E-value=2.9e+02 Score=20.99 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=5.6
Q ss_pred HHHHHhHHHHHHHHH
Q psy12734 35 LGREKIRWTADLATL 49 (217)
Q Consensus 35 L~~e~~rw~~~~~~l 49 (217)
|..|...-+..++-+
T Consensus 163 L~~eIkkT~RRVNAL 177 (217)
T 3aon_A 163 MAEEIEKTRRRVNAL 177 (217)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHh
Confidence 333333333333333
Done!