RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12734
(217 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 196 bits (499), Expect = 6e-58
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 1/164 (0%)
Query: 1 MSKYVGAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60
+Y + E ++++ E+ + +++ + L+ L E+ RW + ++G
Sbjct: 2048 KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107
Query: 61 LLSGAFLCYTSAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEG 120
+L+ AFL Y F FR ++ W + + I SD + L W++
Sbjct: 2108 VLASAFLAYIGFFDQNFRTDLMR-KWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANS 2166
Query: 121 LPPDELSIQNGILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
LP DEL I+N I+ R +PL IDP QA++++ N+ +
Sbjct: 2167 LPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKIT 2210
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 154 bits (391), Expect = 2e-43
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 4/155 (2%)
Query: 12 QKLQE-ETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGACLLSGAFLCYT 70
+KL E + + L+ L EK RW + +LIG C++S + Y
Sbjct: 1878 EKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYF 1937
Query: 71 SAFTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQN 130
R M+ + + K ++ ++R L +W GL ++ ++N
Sbjct: 1938 GHLNERERADMLV-ILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLEN 1996
Query: 131 -GILSTRGCHFPLCIDPQTQALKWIRNREDKNNLK 164
I+ P +DP + + I N N
Sbjct: 1997 MSIVMNSQDAVPFLLDPSSHMITVISNYY-GNKTV 2030
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.16
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 25/48 (52%)
Query: 10 ERQKLQEETDIMMRRLEAADKLISGLGREKIRWTAD----L---ATLE 50
E+Q L ++L+A+ KL + D L AT+E
Sbjct: 18 EKQAL--------KKLQASLKL----------YADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.48
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 33/90 (36%)
Query: 26 EAADKLISGLGREKIRWTA--------------DLATLEQNRNQLIGACLLSGAFLCYTS 71
A+D + L + + + A DL L + ++ I C++
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP------ 487
Query: 72 AFTWEFRQQMVYVDWQSNITKLSIPIVSDF 101
V W++ T+ + DF
Sbjct: 488 ------------VKWET-TTQFKATHILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.69
Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 48/178 (26%)
Query: 14 LQEETDIMMRRLEAADKLISGLGREKIRWTADL-ATLEQNRNQLIGACLLSGAFLCYTSA 72
I L + W + + + N+L L+ T
Sbjct: 381 FPPSAHIPTILLS-------------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-- 425
Query: 73 FTWEFRQQMVYVDWQSNITKLSIPIVSDFRLEKELCDDVMISQ-WNSEGLPPDELSIQNG 131
+Y++ L + + +++ L + + D I + ++S+ L P L
Sbjct: 426 ----ISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QY 472
Query: 132 ILSTRGCH------------FP-LCIDPQTQALKWIRNREDKNNLKWNSEGLPPDELS 176
S G H F + +D +++ + ++ WN+ G + L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLEQKIRHDSTAWNASGSILNTLQ 525
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 28.7 bits (65), Expect = 1.5
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 21 MMRRLEAADKLISGLGREKIRWTADLATLEQNRN--QLI----GACLLSGAFLCYTSAFT 74
MM +L D ++SG ++D TL R Q++ GA L S F+
Sbjct: 110 MMAKLGEVDGVVSGA----AHSSSD--TL---RPAVQIVKTAKGAALASAFFIISVPDCE 160
Query: 75 WEFRQQMVYVD 85
+ ++ D
Sbjct: 161 YGSDGTFLFAD 171
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2
PDB: 1a77_A
Length = 326
Score = 26.7 bits (59), Expect = 6.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 38 EKIRWTADLATLEQNRNQLIGACLLSG 64
E I L L + + LI + G
Sbjct: 196 ELIELNEVLEDLRISLDDLIDIAIFMG 222
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 26.8 bits (59), Expect = 6.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 156 NREDKNNLKWNSEGLPPDELSIQNGILS 183
NR+ +N + EGL E+ +Q G+ +
Sbjct: 306 NRKQRNKMSVVKEGLKVSEVILQEGVYT 333
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus
amylolyticus}
Length = 363
Score = 26.4 bits (58), Expect = 8.0
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 37 REKIRWTADLATLEQNRNQLIGACLLSG 64
E I L L LI +L G
Sbjct: 221 PELIELDKLLVQLGITLENLIDIGILLG 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.422
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,333,908
Number of extensions: 181013
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 16
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)