RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12734
         (217 letters)



>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 27.2 bits (60), Expect = 0.83
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 6   GAMTERQKLQEETDIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGA 59
           G   ++   ++  + +  +    +  +  +G      T  +  L     +L+ A
Sbjct: 79  GVAIKK-NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131


>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
           {Escherichia coli [TaxId: 562]}
          Length = 167

 Score = 24.7 bits (53), Expect = 9.2
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 83  YVDWQSNITKL--SIPIVSDFRLEKELCDDVMISQWNSEGLPPDELSIQNGILSTRGCHF 140
           Y+    N        P + +F  + E  D      W  EG      S  N I + +G   
Sbjct: 6   YLAEAVNGLPTLPEKPFIGNFAGDTEAVD--WALLWLPEGGELLTESYVNLIPTMQGGT- 62

Query: 141 PLCIDPQTQALKWIRNREDKNNLKWNSEGLPPDE 174
                 +   L  +R   +  N+      L  ++
Sbjct: 63  -HVNGLRQGLLDAMREFCEYRNILPRGVKLSAED 95


>d1de4a2 d.19.1.1 (A:4-181) Hemochromatosis protein Hfe, alpha-1 and
           alpha-2 domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 24.3 bits (52), Expect = 9.9
 Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 3/42 (7%)

Query: 19  DIMMRRLEAADKLISGLGREKIRWTADLATLEQNRNQLIGAC 60
                   AA+         K+ W        QNR  L   C
Sbjct: 124 CPDTLDWRAAE---PRAWPTKLEWERHKIRARQNRAYLERDC 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,794
Number of extensions: 36433
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)