BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12735
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 126/201 (62%), Gaps = 7/201 (3%)
Query: 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGP 60
L+ D+FP + + + ++ + KQ + V+K++Q+++ + H M+VGP
Sbjct: 855 LLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGP 914
Query: 61 TGGGKS----VVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSN 116
+GGGK+ V + A+ + + + + ++PKA++ +L+G L+ TR+W DGL +
Sbjct: 915 SGGGKTTSWEVYLEAIEQVDNI---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTA 971
Query: 117 IFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176
R + + S +R +I+FDGDVD W+EN+NS++DDNK+LTL NGER+ L + +++
Sbjct: 972 TLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031
Query: 177 FEVGDLQYASPATVSRAGMVY 197
FEV DL+YA+ AT+SR GMV+
Sbjct: 1032 FEVQDLKYATLATISRCGMVW 1052
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 25/121 (20%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLS 115
+++G +GGGKSV+ S + + +N ++ I++ N ++ D+ D L
Sbjct: 1650 LLIGVSGGGKSVL-------SRFVAW------MNGLSIYTIKVNN--NYKSSDFDDDLRM 1694
Query: 116 NIFRAVNKPLDPGSKERKY-ILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAH 172
+ RA G KE K +FD +++ ++E MN+++ ++ L GE L H
Sbjct: 1695 LLKRA-------GCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMH 1747
Query: 173 C 173
Sbjct: 1748 A 1748
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 126/201 (62%), Gaps = 7/201 (3%)
Query: 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGP 60
L+ D+FP + + + ++ + KQ + V+K++Q+++ + H M+VGP
Sbjct: 855 LLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGP 914
Query: 61 TGGGKS----VVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSN 116
+GGGK+ V + A+ + + + + ++PKA++ +L+G L+ TR+W DGL +
Sbjct: 915 SGGGKTTSWEVYLEAIEQVDNI---KSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTA 971
Query: 117 IFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176
R + + S +R +I+FDGDVD W+EN+NS++DDNK+LTL NGER+ L + +++
Sbjct: 972 TLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVM 1031
Query: 177 FEVGDLQYASPATVSRAGMVY 197
FEV DL+YA+ AT+SR GMV+
Sbjct: 1032 FEVQDLKYATLATISRCGMVW 1052
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 25/121 (20%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLS 115
+++G +GGGKSV+ S + + +N ++ I++ N ++ D+ D L
Sbjct: 1650 LLIGVSGGGKSVL-------SRFVAW------MNGLSIYTIKVNN--NYKSSDFDDDLRM 1694
Query: 116 NIFRAVNKPLDPGSKERKY-ILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAH 172
+ RA G KE K +FD +++ ++E MN+++ ++ L GE L H
Sbjct: 1695 LLKRA-------GCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMH 1747
Query: 173 C 173
Sbjct: 1748 A 1748
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 28 KQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTY 86
++ + M + K +Q Y T+ + ++VG G GK+ ++ + G+ Y
Sbjct: 680 QRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVY 739
Query: 87 TLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK-ERKYILFDGDVDALW 145
++ K ++ LYG + T +W DGL ++I R VN + K R +++FD D+D +
Sbjct: 740 VIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEY 799
Query: 146 IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197
+E MNSV+DDNKILTL NGER+ + + ++LFE +L + +PAT++R G+++
Sbjct: 800 VEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLW 851
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 13 RVSYPEFTAALETVLKQDNYEMVP---------VQVDKVVQMYETMLTRHSTMIVGPTGG 63
++S+ F + + +V + + M P ++ +K+ Y+ + ++ ++ GP G
Sbjct: 1002 KLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKI--FYDLLNSKRGIILCGPPGS 1059
Query: 64 GKSVVINALVKTSTV 78
GK++++N ++ S++
Sbjct: 1060 GKTMIMNNALRNSSL 1074
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%), Gaps = 2/178 (1%)
Query: 22 ALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-G 80
L+ ++ + M + K +Q Y T+ + ++VG G GK+ ++ + G
Sbjct: 893 CLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDG 952
Query: 81 YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK-ERKYILFDG 139
+ Y ++ K ++ LYG + T +W DGL ++I R VN + K R +++FD
Sbjct: 953 HANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDS 1012
Query: 140 DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197
D+D ++E MNSV+DDNKILTL NGER+ + + ++LFE +L + +PAT++R G+++
Sbjct: 1013 DLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLW 1070
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/75 (18%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 13 RVSYPEFTAALETVLKQDNYEMVP---------VQVDKVVQMYETMLTRHSTMIVGPTGG 63
++S+ F + + +V + + M P ++ +K+ Y+ + ++ ++ GP G
Sbjct: 1221 KLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKI--FYDLLNSKRGIILCGPPGS 1278
Query: 64 GKSVVINALVKTSTV 78
GK++++N ++ S++
Sbjct: 1279 GKTMIMNNALRNSSL 1293
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 55 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD 111
T I+GP G GKS +++A+ S VLG R+ L + + GVLN E D YD
Sbjct: 29 TSIIGPNGSGKSNMMDAI---SFVLG--VRSNHLRSNILKDLIYRGVLNDENSDDYD 80
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 34 MVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINAL--VKTSTVLGYPARTYTLNPK 91
MV ++ E LT ++ G +G GKS ++NAL ++ + AR Y P
Sbjct: 142 MVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNTAARLYHF-PH 200
Query: 92 AVSVIELYGV-------LNPET-----RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG 139
VI+ GV L PE +++D L +R DPG R+ + +G
Sbjct: 201 GGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVE-NG 259
Query: 140 DVDALWIENMNSVMD 154
+ EN + +++
Sbjct: 260 AIAETRFENYHRILE 274
>pdb|3VF2|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz M473i
Variant In Complex With Carbamoyl Phosphate And Adp
Length = 576
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 69 INALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-----------RDWYDGLLSNI 117
+ AL+ + V+G+ + P+A+ L G + T R+W+ ++
Sbjct: 402 VAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSM 461
Query: 118 FRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN-----KILTLANGERIRLLAH 172
R+V+ + + YI+ V A + E + SV+ ++ + +T A+ R +
Sbjct: 462 LRSVSDQVLEVDADFPYIIMTTKVRAAYAERLPSVVHEDWSTRPQTVTEASNPR-----Y 516
Query: 173 CQLLFEVGDL 182
++L E+GDL
Sbjct: 517 HRMLTELGDL 526
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 56 MIVGPTGGGKSVVINALVKT-STVLGYPARTYTLNPK 91
++ GP+G GKS ++ L + S++ G+ T NP+
Sbjct: 8 VLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPR 44
>pdb|1O9R|A Chain A, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|B Chain B, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|C Chain C, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|D Chain D, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|E Chain E, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|F Chain F, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
Length = 162
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 37 VQVDKVVQMYETMLTRHSTMI---VGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 93
+ V +++ + T L H I V GG + A+ T+ + YP Y ++
Sbjct: 49 IAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTTKLKAYPTDIYKIHDHLD 108
Query: 94 SVIELYGVLNPETRDWYDG-------LLSNIFRAVNKPLD 126
++IE YG + R D ++IF A ++ LD
Sbjct: 109 ALIERYGEVANMIRKAIDDSDEAGDPTTADIFTAASRDLD 148
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 83 ARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142
AR NPK + + E L+ E+ + V + LD + R I+
Sbjct: 1229 ARALVRNPKILLLDEATSALDTESE-----------KVVQEALDRAREGRTCIVI----- 1272
Query: 143 ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG 180
+N+VM+ + I ++NG I H QL+ E G
Sbjct: 1273 ---AHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 42 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPARTYTLNPKAVSVIELY 99
VQ+Y T HS++ G + +NA +TS G R T P+A+ + E+
Sbjct: 98 AVQLYHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIP 157
Query: 100 GVLN 103
G++N
Sbjct: 158 GIVN 161
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 81 YPARTYTLNPKAVSVIELYGVLNPETRDWYDG 112
YPAR +NP+ V+ +GV+ PE + G
Sbjct: 28 YPARLGDINPETEFVLRKFGVMEPELIESAKG 59
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETR 107
++GP G GKS +IN L T +L YT ++ I+ + + E+
Sbjct: 704 VIGPNGAGKSTLINVL--TGELLPTSGEVYTHENCRIAYIKQHAFAHIESH 752
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T+I+GP G GKS +IN +
Sbjct: 36 TLIIGPNGSGKSTLINVI 53
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T+I+GP G GKS +IN +
Sbjct: 36 TLIIGPNGSGKSTLINVI 53
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 44 QMYETMLTRHSTMIVGPTGGGKSVV 68
++ +T+L+ ++V PTGGGKS+
Sbjct: 32 EIIDTVLSGRDCLVVXPTGGGKSLC 56
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T+I+GP G GKS +IN +
Sbjct: 36 TLIIGPNGSGKSTLINVI 53
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 105 ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141
+TR W DGL+ N F +N + E Y +DGD
Sbjct: 212 KTRMWNDGLIKNTFEQINPNI-----EITYWSYDGDT 243
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 57 IVGPTGGGKSVVINALVK 74
+VGPTG GK+ ++N L++
Sbjct: 386 LVGPTGSGKTTIVNLLMR 403
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYT 87
++GP G GKS +IN L T +L YT
Sbjct: 698 VIGPNGAGKSTLINVL--TGELLPTSGEVYT 726
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYT 87
++GP G GKS +IN L T +L YT
Sbjct: 704 VIGPNGAGKSTLINVL--TGELLPTSGEVYT 732
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,307,877
Number of Sequences: 62578
Number of extensions: 304106
Number of successful extensions: 1048
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 38
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)