Query psy12735
Match_columns 233
No_of_seqs 200 out of 2195
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 99.9 2.7E-22 5.8E-27 166.7 3.7 145 26-201 17-215 (258)
2 COG1126 GlnQ ABC-type polar am 99.9 1.1E-22 2.4E-27 162.7 1.3 144 26-201 17-212 (240)
3 COG1116 TauB ABC-type nitrate/ 99.8 8.5E-22 1.8E-26 161.3 4.3 134 24-185 16-194 (248)
4 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 4E-21 8.7E-26 159.0 4.7 144 26-201 19-215 (254)
5 COG1136 SalX ABC-type antimicr 99.8 1.9E-20 4.2E-25 152.7 4.6 144 25-200 19-217 (226)
6 COG1125 OpuBA ABC-type proline 99.8 3.1E-20 6.6E-25 152.0 3.0 143 26-197 16-210 (309)
7 COG1124 DppF ABC-type dipeptid 99.8 1.5E-19 3.3E-24 147.2 6.2 164 25-217 21-246 (252)
8 COG4608 AppF ABC-type oligopep 99.8 5.8E-19 1.2E-23 146.4 7.7 168 25-221 27-218 (268)
9 COG3638 ABC-type phosphate/pho 99.8 9E-20 2E-24 147.8 2.6 132 26-185 19-211 (258)
10 COG1117 PstB ABC-type phosphat 99.8 3.6E-19 7.7E-24 142.3 4.8 144 25-199 21-224 (253)
11 COG3840 ThiQ ABC-type thiamine 99.8 1E-18 2.2E-23 136.5 6.0 154 48-217 21-222 (231)
12 COG1131 CcmA ABC-type multidru 99.7 9.4E-19 2E-23 149.9 4.4 133 26-186 20-201 (293)
13 COG3842 PotA ABC-type spermidi 99.7 5.7E-19 1.2E-23 152.8 2.9 145 26-199 20-213 (352)
14 COG1135 AbcC ABC-type metal io 99.7 4.6E-19 1E-23 148.7 1.4 131 26-176 21-205 (339)
15 COG4559 ABC-type hemin transpo 99.7 1.5E-18 3.3E-23 138.6 3.8 135 51-197 26-215 (259)
16 COG4555 NatA ABC-type Na+ tran 99.7 8.8E-19 1.9E-23 138.9 2.1 150 23-202 14-212 (245)
17 COG1127 Ttg2A ABC-type transpo 99.7 9.7E-19 2.1E-23 142.2 2.4 162 26-216 23-248 (263)
18 COG0444 DppD ABC-type dipeptid 99.7 4E-18 8.6E-23 144.3 6.1 164 26-218 20-259 (316)
19 COG3839 MalK ABC-type sugar tr 99.7 2.6E-18 5.5E-23 148.1 4.4 143 26-197 18-208 (338)
20 COG2884 FtsE Predicted ATPase 99.7 4.3E-18 9.2E-23 133.9 5.0 133 24-185 15-200 (223)
21 cd03216 ABC_Carb_Monos_I This 99.7 3.4E-18 7.3E-23 134.5 4.3 127 51-196 25-155 (163)
22 cd03222 ABC_RNaseL_inhibitor T 99.7 4E-18 8.7E-23 135.6 4.3 115 49-186 22-136 (177)
23 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 6.1E-18 1.3E-22 138.8 4.7 133 26-186 19-205 (218)
24 COG1122 CbiO ABC-type cobalt t 99.7 2.2E-18 4.8E-23 142.6 1.9 135 25-187 18-204 (235)
25 TIGR02314 ABC_MetN D-methionin 99.7 3.3E-18 7E-23 149.4 1.1 133 26-186 20-205 (343)
26 cd03246 ABCC_Protease_Secretio 99.7 2.4E-17 5.1E-22 130.8 5.9 131 26-185 17-159 (173)
27 COG2274 SunT ABC-type bacterio 99.7 2.7E-17 5.9E-22 154.7 7.0 126 47-185 494-671 (709)
28 TIGR01186 proV glycine betaine 99.7 4E-17 8.6E-22 143.4 7.4 142 26-196 8-203 (363)
29 cd03228 ABCC_MRP_Like The MRP 99.7 2.6E-17 5.7E-22 130.3 5.7 139 26-196 17-167 (171)
30 cd03230 ABC_DR_subfamily_A Thi 99.7 1.9E-17 4.1E-22 131.4 4.6 131 26-185 15-158 (173)
31 cd03226 ABC_cobalt_CbiO_domain 99.7 4.9E-18 1.1E-22 138.2 1.2 131 26-185 15-189 (205)
32 TIGR00960 3a0501s02 Type II (G 99.7 1.6E-17 3.5E-22 136.2 4.3 131 26-185 18-201 (216)
33 PRK11022 dppD dipeptide transp 99.7 1.2E-17 2.7E-22 145.1 3.8 163 26-217 22-258 (326)
34 cd03293 ABC_NrtD_SsuB_transpor 99.7 2.2E-17 4.8E-22 135.8 4.5 130 26-185 19-195 (220)
35 COG4525 TauB ABC-type taurine 99.7 3.8E-17 8.2E-22 129.2 5.5 146 24-200 18-208 (259)
36 TIGR02673 FtsE cell division A 99.7 1.2E-17 2.7E-22 136.6 2.7 132 26-186 17-201 (214)
37 cd03259 ABC_Carb_Solutes_like 99.7 1.4E-17 3E-22 136.3 2.8 132 26-185 15-194 (213)
38 cd03229 ABC_Class3 This class 99.7 2.6E-17 5.7E-22 131.2 4.3 132 26-185 15-164 (178)
39 cd03213 ABCG_EPDR ABCG transpo 99.7 4.4E-17 9.4E-22 131.7 5.4 142 26-196 24-185 (194)
40 PRK11629 lolD lipoprotein tran 99.7 2.6E-17 5.7E-22 136.5 4.2 134 26-187 24-211 (233)
41 cd03247 ABCC_cytochrome_bd The 99.7 8.4E-17 1.8E-21 128.2 6.9 139 26-196 17-169 (178)
42 PRK13537 nodulation ABC transp 99.7 8.9E-18 1.9E-22 144.8 1.3 131 26-185 22-201 (306)
43 COG4604 CeuD ABC-type enteroch 99.7 2.6E-17 5.5E-22 130.3 3.7 124 51-187 26-201 (252)
44 PRK11650 ugpC glycerol-3-phosp 99.7 6.1E-17 1.3E-21 142.2 6.4 142 26-196 19-208 (356)
45 PRK13536 nodulation factor exp 99.7 1.1E-17 2.4E-22 146.0 1.8 123 49-185 64-235 (340)
46 TIGR02211 LolD_lipo_ex lipopro 99.7 1.2E-16 2.6E-21 131.5 7.4 141 26-196 20-214 (221)
47 COG1123 ATPase components of v 99.7 6.2E-17 1.3E-21 146.2 6.1 154 50-217 315-534 (539)
48 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.5E-16 3.2E-21 122.7 7.3 117 50-196 24-140 (144)
49 cd03261 ABC_Org_Solvent_Resist 99.7 4.1E-17 8.8E-22 135.5 4.4 132 26-185 15-200 (235)
50 PRK15079 oligopeptide ABC tran 99.7 1.1E-16 2.4E-21 139.3 7.3 163 26-217 36-266 (331)
51 PRK11308 dppF dipeptide transp 99.7 1.1E-16 2.5E-21 139.1 7.2 163 26-217 30-259 (327)
52 cd03218 ABC_YhbG The ABC trans 99.7 2.9E-17 6.3E-22 136.0 3.2 146 26-203 15-211 (232)
53 TIGR01188 drrA daunorubicin re 99.7 1.3E-17 2.7E-22 143.7 1.0 128 26-173 8-184 (302)
54 PRK13650 cbiO cobalt transport 99.7 3.8E-17 8.2E-22 139.2 3.8 141 26-196 22-213 (279)
55 cd03258 ABC_MetN_methionine_tr 99.7 7.2E-17 1.6E-21 133.8 5.4 142 26-196 20-214 (233)
56 TIGR03265 PhnT2 putative 2-ami 99.7 8.4E-17 1.8E-21 141.2 5.9 133 51-197 29-209 (353)
57 COG0411 LivG ABC-type branched 99.7 5.6E-18 1.2E-22 138.1 -1.5 135 27-181 20-218 (250)
58 PRK11432 fbpC ferric transport 99.7 8.7E-17 1.9E-21 140.9 5.9 133 51-197 31-211 (351)
59 TIGR01288 nodI ATP-binding ABC 99.7 2.4E-17 5.1E-22 142.0 2.1 115 26-160 19-182 (303)
60 PRK13637 cbiO cobalt transport 99.7 4.8E-17 1E-21 139.1 4.0 142 26-196 22-218 (287)
61 cd03214 ABC_Iron-Siderophores_ 99.7 5E-17 1.1E-21 129.7 3.8 132 26-185 14-161 (180)
62 cd03294 ABC_Pro_Gly_Bertaine T 99.7 8E-17 1.7E-21 136.5 4.9 123 50-185 48-224 (269)
63 PRK09473 oppD oligopeptide tra 99.7 1.4E-16 3E-21 138.7 6.4 163 26-217 31-266 (330)
64 TIGR01166 cbiO cobalt transpor 99.7 6.6E-17 1.4E-21 130.0 4.1 130 26-184 7-189 (190)
65 cd03269 ABC_putative_ATPase Th 99.7 5.9E-17 1.3E-21 132.3 3.8 121 50-185 24-191 (210)
66 cd03225 ABC_cobalt_CbiO_domain 99.7 2.7E-17 5.9E-22 134.3 1.7 131 26-185 16-197 (211)
67 PRK13644 cbiO cobalt transport 99.7 8.7E-17 1.9E-21 136.6 4.8 141 26-197 17-209 (274)
68 PRK13543 cytochrome c biogenes 99.6 6.8E-17 1.5E-21 132.4 3.9 132 26-186 26-201 (214)
69 KOG0057|consensus 99.6 1.6E-16 3.5E-21 141.9 6.5 139 48-201 374-561 (591)
70 TIGR02315 ABC_phnC phosphonate 99.6 1.1E-16 2.5E-21 133.4 5.3 132 26-185 17-209 (243)
71 PRK11153 metN DL-methionine tr 99.6 6.6E-17 1.4E-21 141.5 4.0 132 26-185 20-204 (343)
72 COG4175 ProV ABC-type proline/ 99.6 7.2E-17 1.6E-21 135.9 4.0 155 48-216 50-268 (386)
73 cd03215 ABC_Carb_Monos_II This 99.6 1.3E-16 2.8E-21 127.7 5.0 122 50-185 24-167 (182)
74 TIGR02868 CydC thiol reductant 99.6 1E-16 2.2E-21 147.9 5.0 107 47-157 356-514 (529)
75 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 3.5E-16 7.5E-21 130.1 7.7 157 26-214 16-221 (236)
76 cd03292 ABC_FtsE_transporter F 99.6 9.6E-17 2.1E-21 131.3 4.2 132 26-186 16-200 (214)
77 cd03301 ABC_MalK_N The N-termi 99.6 6.1E-17 1.3E-21 132.4 3.0 132 26-185 15-194 (213)
78 cd03266 ABC_NatA_sodium_export 99.6 4.7E-17 1E-21 133.6 2.1 131 26-185 20-199 (218)
79 cd03217 ABC_FeS_Assembly ABC-t 99.6 7.1E-17 1.5E-21 131.0 3.1 142 26-196 15-178 (200)
80 PRK11247 ssuB aliphatic sulfon 99.6 6.7E-17 1.5E-21 136.1 3.1 132 26-185 27-197 (257)
81 PRK13635 cbiO cobalt transport 99.6 9.6E-17 2.1E-21 136.7 4.0 142 26-197 22-214 (279)
82 KOG0058|consensus 99.6 1.4E-16 3E-21 146.5 5.3 144 25-200 482-677 (716)
83 cd03223 ABCD_peroxisomal_ALDP 99.6 6.2E-16 1.3E-20 122.0 8.3 125 26-184 16-150 (166)
84 cd03235 ABC_Metallic_Cations A 99.6 4E-17 8.6E-22 133.6 1.6 131 26-185 14-195 (213)
85 cd03264 ABC_drug_resistance_li 99.6 7.5E-17 1.6E-21 131.8 3.1 129 26-185 15-192 (211)
86 PRK10070 glycine betaine trans 99.6 3E-16 6.5E-21 139.5 7.2 124 49-185 51-228 (400)
87 PRK09452 potA putrescine/sperm 99.6 2.1E-16 4.6E-21 139.5 6.1 123 50-185 38-208 (375)
88 TIGR03410 urea_trans_UrtE urea 99.6 1.9E-16 4E-21 131.1 5.4 133 26-186 15-196 (230)
89 PRK13633 cobalt transporter AT 99.6 1.1E-16 2.4E-21 136.4 4.2 141 26-196 25-217 (280)
90 cd03224 ABC_TM1139_LivF_branch 99.6 1.3E-16 2.8E-21 131.2 4.5 131 26-185 15-195 (222)
91 TIGR03258 PhnT 2-aminoethylpho 99.6 2.2E-16 4.7E-21 138.9 6.1 142 26-196 20-212 (362)
92 COG1118 CysA ABC-type sulfate/ 99.6 2.7E-16 5.8E-21 132.0 6.3 123 50-185 26-201 (345)
93 cd03262 ABC_HisP_GlnQ_permease 99.6 5.1E-17 1.1E-21 132.8 1.9 121 51-185 25-198 (213)
94 PRK13646 cbiO cobalt transport 99.6 1E-16 2.2E-21 137.0 3.8 142 26-196 22-219 (286)
95 COG4107 PhnK ABC-type phosphon 99.6 2.7E-16 5.8E-21 122.4 5.7 133 26-186 21-216 (258)
96 cd03265 ABC_DrrA DrrA is the A 99.6 3.9E-17 8.4E-22 134.3 1.1 132 26-185 15-195 (220)
97 PRK09536 btuD corrinoid ABC tr 99.6 1.2E-16 2.5E-21 142.2 4.2 141 26-196 18-212 (402)
98 PRK13634 cbiO cobalt transport 99.6 9.3E-17 2E-21 137.5 3.5 143 26-197 22-220 (290)
99 cd03231 ABC_CcmA_heme_exporter 99.6 1.1E-16 2.5E-21 129.9 3.7 133 26-187 15-190 (201)
100 cd03233 ABC_PDR_domain1 The pl 99.6 1.6E-16 3.5E-21 129.1 4.4 115 26-160 22-165 (202)
101 cd03296 ABC_CysA_sulfate_impor 99.6 1.6E-16 3.4E-21 132.4 4.2 132 26-185 17-200 (239)
102 PRK10584 putative ABC transpor 99.6 5.7E-16 1.2E-20 128.0 7.5 122 51-185 35-210 (228)
103 cd03268 ABC_BcrA_bacitracin_re 99.6 1.7E-16 3.7E-21 129.4 4.3 131 26-185 15-189 (208)
104 COG1123 ATPase components of v 99.6 1.9E-16 4.1E-21 143.0 4.8 165 25-218 23-260 (539)
105 PRK13651 cobalt transporter AT 99.6 5.1E-17 1.1E-21 140.0 1.0 141 26-196 22-238 (305)
106 PRK13648 cbiO cobalt transport 99.6 2.1E-16 4.6E-21 133.9 4.8 141 26-196 24-215 (269)
107 cd03237 ABC_RNaseL_inhibitor_d 99.6 2.6E-16 5.6E-21 131.7 5.2 138 26-186 9-180 (246)
108 PRK11248 tauB taurine transpor 99.6 9.4E-17 2E-21 135.1 2.6 130 26-185 16-192 (255)
109 cd03263 ABC_subfamily_A The AB 99.6 5.2E-17 1.1E-21 133.5 1.0 131 26-186 17-196 (220)
110 cd03256 ABC_PhnC_transporter A 99.6 2.3E-16 5.1E-21 131.3 4.9 142 26-196 16-218 (241)
111 PRK10908 cell division protein 99.6 1.9E-16 4.2E-21 130.4 4.3 123 50-186 26-201 (222)
112 PRK11000 maltose/maltodextrin 99.6 2.6E-16 5.7E-21 138.9 5.3 132 26-185 18-197 (369)
113 PRK10851 sulfate/thiosulfate t 99.6 4.2E-16 9.2E-21 136.8 6.6 142 26-196 17-210 (353)
114 PRK11607 potG putrescine trans 99.6 3.5E-16 7.6E-21 138.3 6.0 133 50-196 43-223 (377)
115 PRK13647 cbiO cobalt transport 99.6 4.9E-17 1.1E-21 138.2 0.6 141 26-196 20-211 (274)
116 PRK11144 modC molybdate transp 99.6 5.2E-16 1.1E-20 136.3 7.0 123 50-185 22-192 (352)
117 cd03257 ABC_NikE_OppD_transpor 99.6 1.1E-16 2.4E-21 132.1 2.6 132 26-185 20-209 (228)
118 TIGR03608 L_ocin_972_ABC putat 99.6 2.1E-16 4.5E-21 128.6 4.1 130 26-184 13-196 (206)
119 PRK15093 antimicrobial peptide 99.6 1.8E-16 3.9E-21 138.1 3.9 163 26-217 22-263 (330)
120 PRK13631 cbiO cobalt transport 99.6 7.9E-17 1.7E-21 139.7 1.5 132 26-186 41-240 (320)
121 PRK13636 cbiO cobalt transport 99.6 1.9E-16 4.1E-21 135.1 3.9 142 26-196 21-215 (283)
122 PRK13643 cbiO cobalt transport 99.6 7.4E-17 1.6E-21 138.0 1.2 132 26-186 21-208 (288)
123 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 2E-16 4.3E-21 150.7 3.9 137 48-203 501-689 (710)
124 COG4618 ArpD ABC-type protease 99.6 1.9E-16 4.1E-21 140.4 3.4 123 49-171 359-530 (580)
125 PRK11614 livF leucine/isoleuci 99.6 1.2E-16 2.7E-21 132.8 2.1 141 26-196 20-210 (237)
126 TIGR03415 ABC_choXWV_ATP choli 99.6 8.6E-16 1.9E-20 135.7 7.4 133 50-196 48-238 (382)
127 TIGR01184 ntrCD nitrate transp 99.6 8.2E-17 1.8E-21 133.4 0.9 123 50-185 9-178 (230)
128 COG4181 Predicted ABC-type tra 99.6 1.2E-15 2.6E-20 118.4 7.3 124 50-186 34-211 (228)
129 PRK13638 cbiO cobalt transport 99.6 1E-16 2.2E-21 136.0 1.4 131 26-185 16-199 (271)
130 PRK11831 putative ABC transpor 99.6 9.6E-16 2.1E-20 129.9 7.4 122 51-185 32-207 (269)
131 TIGR02142 modC_ABC molybdenum 99.6 7.9E-16 1.7E-20 135.3 7.0 123 50-185 21-195 (354)
132 PRK13538 cytochrome c biogenes 99.6 4.7E-16 1E-20 126.5 5.2 131 26-185 16-192 (204)
133 PRK10247 putative ABC transpor 99.6 4.6E-16 9.9E-21 128.5 5.1 141 26-196 22-210 (225)
134 PRK13641 cbiO cobalt transport 99.6 1.1E-16 2.4E-21 136.9 1.5 141 26-196 22-218 (287)
135 PRK11174 cysteine/glutathione 99.6 3.3E-16 7.2E-21 146.2 4.7 124 48-185 372-547 (588)
136 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.9E-16 6.2E-21 128.3 3.7 125 49-186 21-193 (211)
137 PRK15112 antimicrobial peptide 99.6 4.3E-16 9.4E-21 131.9 4.8 142 26-196 28-223 (267)
138 PRK11264 putative amino-acid A 99.6 1.5E-16 3.2E-21 133.3 1.9 131 26-185 18-207 (250)
139 PRK13539 cytochrome c biogenes 99.6 9.3E-16 2E-20 125.1 6.6 133 26-187 17-192 (207)
140 cd03219 ABC_Mj1267_LivG_branch 99.6 1.6E-16 3.4E-21 132.0 2.0 132 26-186 15-207 (236)
141 PRK13632 cbiO cobalt transport 99.6 4.4E-16 9.6E-21 132.1 4.6 132 26-185 24-206 (271)
142 PRK13640 cbiO cobalt transport 99.6 3.7E-16 8.1E-21 133.3 4.2 141 26-196 22-216 (282)
143 PRK09493 glnQ glutamine ABC tr 99.6 1.5E-16 3.2E-21 132.6 1.5 141 26-196 16-209 (240)
144 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 3.5E-16 7.5E-21 148.5 4.3 127 47-185 474-648 (686)
145 PRK13652 cbiO cobalt transport 99.6 8.1E-16 1.7E-20 130.9 6.1 142 26-196 19-211 (277)
146 PRK13541 cytochrome c biogenes 99.6 1.3E-15 2.8E-20 123.1 6.9 122 50-186 24-187 (195)
147 PRK11176 lipid transporter ATP 99.6 3.1E-16 6.7E-21 146.2 3.8 139 48-203 365-556 (582)
148 cd03232 ABC_PDR_domain2 The pl 99.6 1.2E-15 2.6E-20 123.0 6.6 129 26-184 22-170 (192)
149 PRK10771 thiQ thiamine transpo 99.6 1.1E-15 2.5E-20 126.6 6.7 134 49-196 22-203 (232)
150 cd03234 ABCG_White The White s 99.6 7.7E-16 1.7E-20 127.2 5.6 143 25-196 21-217 (226)
151 TIGR02769 nickel_nikE nickel i 99.6 3.9E-16 8.6E-21 132.0 3.9 132 26-185 26-214 (265)
152 cd03254 ABCC_Glucan_exporter_l 99.6 8.9E-16 1.9E-20 126.9 6.0 144 26-203 18-215 (229)
153 cd03295 ABC_OpuCA_Osmoprotecti 99.6 9.3E-16 2E-20 127.9 6.1 132 26-185 16-199 (242)
154 COG0410 LivF ABC-type branched 99.6 1.7E-16 3.7E-21 128.5 1.6 139 25-183 17-207 (237)
155 cd03251 ABCC_MsbA MsbA is an e 99.6 8.2E-16 1.8E-20 127.5 5.5 139 26-196 17-209 (234)
156 TIGR02857 CydD thiol reductant 99.6 6E-16 1.3E-20 142.7 5.1 125 47-184 343-519 (529)
157 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 7.7E-16 1.7E-20 128.0 5.2 144 26-203 18-215 (238)
158 PRK13645 cbiO cobalt transport 99.6 4.7E-16 1E-20 133.1 3.9 132 26-185 26-214 (289)
159 KOG0055|consensus 99.6 5.3E-16 1.1E-20 149.9 4.6 115 25-154 1004-1167(1228)
160 TIGR03005 ectoine_ehuA ectoine 99.6 1.6E-15 3.6E-20 127.2 7.1 142 26-196 15-220 (252)
161 TIGR01277 thiQ thiamine ABC tr 99.6 1.3E-15 2.9E-20 124.6 6.4 123 50-185 22-192 (213)
162 PRK13642 cbiO cobalt transport 99.6 4.7E-16 1E-20 132.3 3.8 142 26-197 22-214 (277)
163 PRK14250 phosphate ABC transpo 99.6 2.1E-16 4.6E-21 131.8 1.6 142 26-196 18-205 (241)
164 TIGR02982 heterocyst_DevA ABC 99.6 1.7E-15 3.7E-20 124.6 7.0 141 26-196 20-214 (220)
165 cd03297 ABC_ModC_molybdenum_tr 99.6 4.7E-16 1E-20 127.3 3.4 120 53-185 24-195 (214)
166 cd03369 ABCC_NFT1 Domain 2 of 99.6 1.3E-15 2.8E-20 124.1 5.9 140 26-197 23-197 (207)
167 TIGR00958 3a01208 Conjugate Tr 99.6 8E-16 1.7E-20 146.5 5.3 122 49-185 504-677 (711)
168 PRK10253 iron-enterobactin tra 99.6 6.4E-16 1.4E-20 130.7 4.1 142 26-196 22-217 (265)
169 cd03252 ABCC_Hemolysin The ABC 99.6 1.1E-15 2.4E-20 127.0 5.4 144 26-203 17-214 (237)
170 PRK13649 cbiO cobalt transport 99.6 2E-16 4.4E-21 134.7 1.0 131 26-185 22-208 (280)
171 PRK10895 lipopolysaccharide AB 99.6 8.6E-16 1.9E-20 128.0 4.8 131 26-185 18-200 (241)
172 PRK11701 phnK phosphonate C-P 99.6 5.8E-16 1.3E-20 130.4 3.7 134 26-187 21-217 (258)
173 COG4987 CydC ABC-type transpor 99.6 4.5E-16 9.8E-21 138.9 3.0 160 26-201 338-548 (573)
174 cd03260 ABC_PstB_phosphate_tra 99.6 3E-16 6.4E-21 129.6 1.7 130 26-185 15-203 (227)
175 cd03267 ABC_NatA_like Similar 99.6 5E-16 1.1E-20 129.2 3.0 132 26-185 36-217 (236)
176 COG4619 ABC-type uncharacteriz 99.6 1.2E-15 2.7E-20 118.0 4.9 124 50-186 27-198 (223)
177 COG4598 HisP ABC-type histidin 99.6 8E-16 1.7E-20 120.3 3.9 145 25-201 20-228 (256)
178 TIGR03740 galliderm_ABC gallid 99.6 1.1E-15 2.4E-20 125.9 5.0 130 26-185 15-187 (223)
179 PRK10790 putative multidrug tr 99.6 1.3E-15 2.8E-20 142.4 6.0 124 47-183 362-536 (592)
180 PRK13540 cytochrome c biogenes 99.6 2.1E-15 4.5E-20 122.4 6.4 131 26-185 16-190 (200)
181 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 5.7E-16 1.2E-20 127.9 3.1 123 50-186 46-206 (224)
182 TIGR01189 ccmA heme ABC export 99.6 1.6E-15 3.5E-20 122.8 5.6 128 26-182 15-187 (198)
183 PRK15439 autoinducer 2 ABC tra 99.6 2.9E-16 6.3E-21 144.3 1.3 132 26-186 26-204 (510)
184 COG4586 ABC-type uncharacteriz 99.6 9.6E-16 2.1E-20 126.8 4.2 133 26-186 39-221 (325)
185 PRK13639 cbiO cobalt transport 99.6 6.9E-16 1.5E-20 131.2 3.5 141 26-196 17-210 (275)
186 TIGR03522 GldA_ABC_ATP gliding 99.6 6.5E-16 1.4E-20 133.0 3.4 114 26-159 17-179 (301)
187 PRK11124 artP arginine transpo 99.6 8.1E-16 1.8E-20 128.2 3.7 131 26-185 17-204 (242)
188 cd03250 ABCC_MRP_domain1 Domai 99.6 2.1E-15 4.5E-20 122.7 5.9 139 26-195 20-199 (204)
189 PRK11160 cysteine/glutathione 99.6 2.6E-15 5.7E-20 139.8 7.4 127 47-186 361-538 (574)
190 cd03300 ABC_PotA_N PotA is an 99.6 1E-15 2.2E-20 126.9 4.2 143 26-197 15-205 (232)
191 PRK13548 hmuV hemin importer A 99.6 3.2E-16 7E-21 132.0 1.1 133 26-185 17-204 (258)
192 TIGR02203 MsbA_lipidA lipid A 99.6 7.7E-16 1.7E-20 143.2 3.7 138 48-202 354-544 (571)
193 TIGR03375 type_I_sec_LssB type 99.6 8.5E-16 1.8E-20 146.0 4.0 126 47-185 486-663 (694)
194 cd00267 ABC_ATPase ABC (ATP-bi 99.6 3E-15 6.4E-20 116.8 6.4 120 50-187 23-145 (157)
195 PRK15056 manganese/iron transp 99.6 1.1E-15 2.5E-20 129.6 4.3 122 50-185 31-205 (272)
196 cd03253 ABCC_ATM1_transporter 99.6 4.4E-15 9.5E-20 123.3 7.7 144 26-203 16-213 (236)
197 TIGR01193 bacteriocin_ABC ABC- 99.6 6.3E-16 1.4E-20 147.2 2.9 124 48-185 496-672 (708)
198 PRK09580 sufC cysteine desulfu 99.6 7E-16 1.5E-20 129.0 2.9 131 26-185 16-208 (248)
199 COG1134 TagH ABC-type polysacc 99.6 3.9E-16 8.4E-21 127.5 1.3 125 49-187 50-212 (249)
200 PRK10261 glutathione transport 99.6 3.1E-15 6.8E-20 140.4 7.5 158 47-218 345-569 (623)
201 cd03245 ABCC_bacteriocin_expor 99.6 5.9E-16 1.3E-20 127.2 2.2 130 26-185 19-202 (220)
202 PRK11231 fecE iron-dicitrate t 99.6 4E-16 8.8E-21 131.1 1.1 141 26-196 17-211 (255)
203 TIGR02770 nickel_nikD nickel i 99.6 1.3E-15 2.8E-20 126.2 4.0 133 50-196 10-199 (230)
204 PTZ00265 multidrug resistance 99.6 2E-15 4.2E-20 152.5 5.9 128 47-185 1189-1422(1466)
205 COG1137 YhbG ABC-type (unclass 99.6 5.5E-17 1.2E-21 128.6 -4.2 133 26-178 19-204 (243)
206 PRK10418 nikD nickel transport 99.6 2.5E-15 5.4E-20 126.3 5.6 133 26-186 18-205 (254)
207 TIGR00968 3a0106s01 sulfate AB 99.6 3.2E-15 6.9E-20 124.4 6.1 142 26-196 15-204 (237)
208 cd03299 ABC_ModC_like Archeal 99.6 3.1E-15 6.7E-20 124.3 6.0 132 51-196 24-203 (235)
209 KOG0055|consensus 99.6 1.3E-15 2.9E-20 147.2 4.3 129 47-188 374-554 (1228)
210 TIGR02324 CP_lyasePhnL phospho 99.6 9.4E-16 2E-20 126.4 2.7 131 26-185 23-212 (224)
211 COG4988 CydD ABC-type transpor 99.6 2.3E-15 5E-20 135.8 5.4 156 27-200 323-529 (559)
212 TIGR01978 sufC FeS assembly AT 99.6 9.8E-16 2.1E-20 127.7 2.8 123 51-187 25-209 (243)
213 PRK10762 D-ribose transporter 99.6 7.5E-16 1.6E-20 141.3 2.3 132 26-186 19-205 (501)
214 cd03238 ABC_UvrA The excision 99.6 2.2E-15 4.8E-20 119.8 4.7 127 26-185 10-152 (176)
215 PRK09544 znuC high-affinity zi 99.6 1E-15 2.2E-20 128.5 2.9 133 26-186 19-185 (251)
216 PRK13657 cyclic beta-1,2-gluca 99.6 1.8E-15 4E-20 141.2 4.8 126 47-185 356-533 (588)
217 PRK10575 iron-hydroxamate tran 99.6 1.3E-15 2.8E-20 128.8 3.3 132 26-185 26-211 (265)
218 PRK10619 histidine/lysine/argi 99.6 1.6E-15 3.5E-20 127.6 3.8 132 50-196 29-225 (257)
219 PRK13549 xylose transporter AT 99.6 7.6E-16 1.7E-20 141.4 1.9 132 26-186 20-207 (506)
220 COG1132 MdlB ABC-type multidru 99.6 1.7E-15 3.7E-20 140.8 4.3 106 49-157 352-509 (567)
221 TIGR01846 type_I_sec_HlyB type 99.6 1.7E-15 3.7E-20 143.9 4.4 127 47-186 478-656 (694)
222 TIGR03771 anch_rpt_ABC anchore 99.6 1.8E-15 4E-20 124.8 3.9 121 49-185 3-176 (223)
223 TIGR01842 type_I_sec_PrtD type 99.6 3.4E-15 7.4E-20 138.2 5.9 124 47-184 339-516 (544)
224 TIGR02323 CP_lyasePhnK phospho 99.6 1.2E-15 2.5E-20 128.1 2.5 134 26-187 18-214 (253)
225 TIGR03873 F420-0_ABC_ATP propo 99.6 6.8E-16 1.5E-20 129.8 1.1 141 26-196 16-210 (256)
226 PRK13546 teichoic acids export 99.6 1.6E-15 3.4E-20 128.2 3.3 125 48-186 46-207 (264)
227 TIGR02204 MsbA_rel ABC transpo 99.6 2.2E-15 4.8E-20 140.3 4.2 125 48-185 362-538 (576)
228 PRK10938 putative molybdenum t 99.6 1.4E-15 3E-20 139.1 2.8 132 26-186 18-199 (490)
229 TIGR00972 3a0107s01c2 phosphat 99.6 9.9E-16 2.2E-20 128.1 1.6 130 26-185 16-206 (247)
230 PRK10789 putative multidrug tr 99.5 3.4E-15 7.3E-20 138.9 5.1 123 48-185 337-513 (569)
231 PRK10982 galactose/methyl gala 99.5 1.2E-15 2.6E-20 139.6 2.0 132 26-186 13-198 (491)
232 PRK14242 phosphate transporter 99.5 1.7E-15 3.8E-20 127.1 2.5 140 26-196 21-221 (253)
233 PRK09700 D-allose transporter 99.5 1.6E-15 3.5E-20 139.4 2.4 132 26-186 20-209 (510)
234 PRK10261 glutathione transport 99.5 2.1E-15 4.5E-20 141.6 3.2 143 26-197 31-243 (623)
235 PRK14273 phosphate ABC transpo 99.5 1.8E-15 3.9E-20 127.1 2.4 139 26-195 22-221 (254)
236 PRK14259 phosphate ABC transpo 99.5 1.8E-15 4E-20 128.2 2.4 130 26-185 28-216 (269)
237 TIGR03411 urea_trans_UrtD urea 99.5 2.6E-15 5.7E-20 125.1 3.2 140 26-196 17-215 (242)
238 cd03290 ABCC_SUR1_N The SUR do 99.5 5.3E-15 1.1E-19 121.5 4.9 131 26-185 16-205 (218)
239 PRK15134 microcin C ABC transp 99.5 3.3E-15 7.1E-20 137.9 4.0 133 26-186 24-221 (529)
240 PRK13545 tagH teichoic acids e 99.5 9.1E-16 2E-20 139.1 0.3 131 26-185 39-206 (549)
241 PRK11288 araG L-arabinose tran 99.5 1.4E-15 3E-20 139.6 1.5 131 26-185 19-203 (501)
242 cd03244 ABCC_MRP_domain2 Domai 99.5 4.1E-15 9E-20 122.2 4.1 131 26-186 19-202 (221)
243 TIGR01192 chvA glucan exporter 99.5 5.6E-15 1.2E-19 137.9 5.3 124 47-185 356-533 (585)
244 COG4172 ABC-type uncharacteriz 99.5 1.2E-14 2.5E-19 126.2 6.6 125 48-186 309-491 (534)
245 PRK15177 Vi polysaccharide exp 99.5 1.5E-15 3.2E-20 124.5 0.9 120 51-185 12-166 (213)
246 PRK14247 phosphate ABC transpo 99.5 2E-15 4.4E-20 126.5 1.7 130 26-185 18-208 (250)
247 cd03289 ABCC_CFTR2 The CFTR su 99.5 7.9E-15 1.7E-19 124.6 5.3 138 26-196 19-209 (275)
248 PRK10419 nikE nickel transport 99.5 5.6E-15 1.2E-19 125.2 4.2 132 26-185 27-215 (268)
249 TIGR01194 cyc_pep_trnsptr cycl 99.5 6.3E-15 1.4E-19 136.8 4.9 123 47-183 363-532 (555)
250 PRK13547 hmuV hemin importer A 99.5 5E-15 1.1E-19 125.7 3.8 133 26-185 16-218 (272)
251 COG1129 MglA ABC-type sugar tr 99.5 2.2E-15 4.8E-20 135.3 1.6 136 26-181 23-213 (500)
252 PRK10744 pstB phosphate transp 99.5 2E-15 4.4E-20 127.3 1.2 140 26-196 28-228 (260)
253 PRK10522 multidrug transporter 99.5 2E-14 4.4E-19 133.1 7.8 124 47-183 344-511 (547)
254 PRK11300 livG leucine/isoleuci 99.5 4.7E-15 1E-19 124.5 3.2 123 51-186 30-218 (255)
255 cd03248 ABCC_TAP TAP, the Tran 99.5 4.9E-15 1.1E-19 122.3 3.3 139 26-196 29-221 (226)
256 PRK09700 D-allose transporter 99.5 4.8E-15 1E-19 136.2 3.5 125 48-186 285-473 (510)
257 TIGR01187 potA spermidine/putr 99.5 8.5E-15 1.8E-19 127.3 4.8 116 57-185 1-164 (325)
258 PRK14248 phosphate ABC transpo 99.5 3.8E-15 8.2E-20 126.1 2.5 122 50-186 45-227 (268)
259 PRK14267 phosphate ABC transpo 99.5 3.6E-15 7.9E-20 125.1 2.3 130 26-185 19-211 (253)
260 cd03236 ABC_RNaseL_inhibitor_d 99.5 4.6E-15 9.9E-20 124.8 2.9 123 49-185 23-202 (255)
261 PRK03695 vitamin B12-transport 99.5 2.5E-15 5.5E-20 125.9 1.3 133 26-185 11-196 (248)
262 PRK09984 phosphonate/organopho 99.5 7.3E-15 1.6E-19 124.0 4.1 142 26-196 19-226 (262)
263 PRK10982 galactose/methyl gala 99.5 4.6E-15 1E-19 135.7 2.9 125 48-186 270-455 (491)
264 PRK13409 putative ATPase RIL; 99.5 1.2E-14 2.6E-19 135.4 5.7 127 48-187 361-519 (590)
265 PRK15439 autoinducer 2 ABC tra 99.5 4.2E-15 9.2E-20 136.6 2.6 125 48-186 285-467 (510)
266 TIGR02633 xylG D-xylose ABC tr 99.5 5.6E-15 1.2E-19 135.5 3.4 124 48-185 282-466 (500)
267 PRK14268 phosphate ABC transpo 99.5 3.1E-15 6.8E-20 126.0 1.6 140 26-196 27-226 (258)
268 PRK14240 phosphate transporter 99.5 4.9E-15 1.1E-19 124.1 2.7 130 26-185 18-208 (250)
269 PRK14269 phosphate ABC transpo 99.5 3.4E-15 7.4E-20 124.8 1.7 140 26-196 17-214 (246)
270 PRK14249 phosphate ABC transpo 99.5 6.1E-15 1.3E-19 123.6 3.1 131 26-186 19-210 (251)
271 TIGR02633 xylG D-xylose ABC tr 99.5 4.2E-15 9.1E-20 136.3 2.2 132 26-186 16-205 (500)
272 KOG0056|consensus 99.5 2.6E-15 5.7E-20 132.8 0.8 118 26-160 553-721 (790)
273 cd03288 ABCC_SUR2 The SUR doma 99.5 4.4E-14 9.6E-19 118.9 8.2 139 26-196 36-227 (257)
274 PRK14256 phosphate ABC transpo 99.5 5.3E-15 1.1E-19 124.1 2.5 140 26-196 19-220 (252)
275 PRK14241 phosphate transporter 99.5 4.9E-15 1.1E-19 124.8 2.2 140 26-196 19-220 (258)
276 PLN03232 ABC transporter C fam 99.5 1.2E-14 2.6E-19 147.6 5.3 125 48-185 1258-1433(1495)
277 COG1119 ModF ABC-type molybden 99.5 4.3E-14 9.4E-19 115.6 7.3 134 50-196 55-246 (257)
278 PRK14251 phosphate ABC transpo 99.5 3.7E-15 8E-20 124.9 1.0 140 26-196 19-219 (251)
279 PRK14263 phosphate ABC transpo 99.5 1.5E-14 3.3E-19 122.0 4.6 142 26-198 23-223 (261)
280 PRK11288 araG L-arabinose tran 99.5 7.2E-15 1.6E-19 134.8 2.8 125 48-186 275-460 (501)
281 PLN03130 ABC transporter C fam 99.5 1.6E-14 3.4E-19 147.3 5.5 108 48-158 1261-1419(1622)
282 PRK15134 microcin C ABC transp 99.5 5.9E-15 1.3E-19 136.2 2.2 127 47-187 307-491 (529)
283 PRK14254 phosphate ABC transpo 99.5 1.7E-14 3.7E-19 123.3 4.7 123 50-187 63-244 (285)
284 PRK10762 D-ribose transporter 99.5 1E-14 2.2E-19 133.9 3.4 125 48-186 274-459 (501)
285 COG4152 ABC-type uncharacteriz 99.5 2.3E-15 4.9E-20 122.8 -0.8 108 26-154 17-171 (300)
286 TIGR03269 met_CoM_red_A2 methy 99.5 1.2E-14 2.5E-19 134.0 3.8 66 108-186 168-233 (520)
287 PRK14235 phosphate transporter 99.5 1.7E-14 3.6E-19 122.2 4.4 122 50-186 43-226 (267)
288 COG0396 sufC Cysteine desulfur 99.5 2E-14 4.4E-19 116.3 4.5 133 24-176 17-207 (251)
289 PRK10636 putative ABC transpor 99.5 6.1E-15 1.3E-19 138.8 1.6 120 49-185 335-490 (638)
290 PRK14243 phosphate transporter 99.5 1E-14 2.2E-19 123.3 2.8 141 26-197 25-224 (264)
291 PRK14272 phosphate ABC transpo 99.5 1E-14 2.2E-19 122.3 2.7 131 26-186 19-211 (252)
292 PRK14245 phosphate ABC transpo 99.5 2.2E-14 4.8E-19 120.2 4.6 130 51-196 28-218 (250)
293 PRK14262 phosphate ABC transpo 99.5 2.5E-14 5.4E-19 119.8 4.9 130 51-196 28-218 (250)
294 PRK14239 phosphate transporter 99.5 9E-15 1.9E-19 122.6 2.2 132 26-187 20-212 (252)
295 PRK13409 putative ATPase RIL; 99.5 1.1E-14 2.3E-19 135.7 2.9 133 48-196 95-284 (590)
296 CHL00131 ycf16 sulfate ABC tra 99.5 9.2E-15 2E-19 122.6 2.2 132 26-186 22-215 (252)
297 PRK14238 phosphate transporter 99.5 2E-14 4.4E-19 121.9 4.2 132 49-196 47-239 (271)
298 PRK14265 phosphate ABC transpo 99.5 2.3E-14 5E-19 121.8 4.5 132 50-197 44-234 (274)
299 PRK14237 phosphate transporter 99.5 2.2E-14 4.8E-19 121.4 4.4 140 26-196 35-235 (267)
300 PRK13549 xylose transporter AT 99.5 1.4E-14 3.1E-19 133.0 3.5 125 48-186 284-469 (506)
301 PRK14253 phosphate ABC transpo 99.5 9.4E-15 2E-19 122.3 2.0 140 26-196 18-217 (249)
302 PRK14270 phosphate ABC transpo 99.5 7.3E-15 1.6E-19 123.2 1.3 140 26-196 19-219 (251)
303 PRK14261 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 121.6 3.0 139 26-195 21-220 (253)
304 PRK10938 putative molybdenum t 99.5 2.5E-14 5.3E-19 130.9 4.8 127 48-187 282-467 (490)
305 PRK14244 phosphate ABC transpo 99.5 1E-14 2.2E-19 122.4 2.0 131 26-186 20-212 (251)
306 PRK14274 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 120.7 4.2 131 50-196 36-227 (259)
307 PRK10636 putative ABC transpor 99.5 8.6E-15 1.9E-19 137.7 1.4 129 26-186 16-210 (638)
308 PRK14258 phosphate ABC transpo 99.5 1.3E-14 2.8E-19 122.4 2.2 132 26-185 22-214 (261)
309 TIGR00957 MRP_assoc_pro multi 99.5 3.2E-14 7E-19 144.7 5.4 135 50-201 1310-1495(1522)
310 PRK11819 putative ABC transpor 99.5 1.5E-14 3.4E-19 134.2 2.8 130 26-187 22-225 (556)
311 PRK15064 ABC transporter ATP-b 99.5 1.1E-14 2.4E-19 134.5 1.7 123 48-187 341-500 (530)
312 PRK15064 ABC transporter ATP-b 99.5 1.2E-14 2.6E-19 134.2 1.9 143 26-203 16-230 (530)
313 COG4161 ArtP ABC-type arginine 99.5 2.8E-14 6.1E-19 109.9 3.5 137 50-203 26-219 (242)
314 PRK14275 phosphate ABC transpo 99.5 3.8E-14 8.2E-19 121.2 4.7 132 49-196 62-254 (286)
315 PRK11147 ABC transporter ATPas 99.5 1.6E-14 3.5E-19 135.9 2.6 129 26-186 18-217 (635)
316 PTZ00265 multidrug resistance 99.5 5E-14 1.1E-18 142.4 6.1 39 48-86 407-445 (1466)
317 COG3845 ABC-type uncharacteriz 99.5 1.5E-14 3.2E-19 128.2 1.9 133 26-178 19-205 (501)
318 PRK14255 phosphate ABC transpo 99.5 4.2E-14 9.2E-19 118.6 4.6 121 50-185 29-210 (252)
319 PRK14271 phosphate ABC transpo 99.5 1.7E-14 3.7E-19 122.7 2.1 131 26-186 36-226 (276)
320 PRK14236 phosphate transporter 99.5 5.4E-14 1.2E-18 119.4 5.0 132 50-197 49-241 (272)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.5E-14 5.4E-19 132.7 3.2 130 26-187 20-223 (552)
322 PTZ00243 ABC transporter; Prov 99.5 4.6E-14 9.9E-19 143.6 5.0 128 48-185 1332-1508(1560)
323 COG1101 PhnK ABC-type uncharac 99.5 5.5E-14 1.2E-18 112.9 4.4 133 25-185 20-212 (263)
324 PRK14260 phosphate ABC transpo 99.5 5.7E-14 1.2E-18 118.4 4.6 141 26-197 22-223 (259)
325 TIGR03269 met_CoM_red_A2 methy 99.5 3.1E-14 6.8E-19 131.2 3.2 127 48-187 306-493 (520)
326 PRK14264 phosphate ABC transpo 99.4 4.9E-14 1.1E-18 121.6 4.2 123 49-186 68-263 (305)
327 COG4133 CcmA ABC-type transpor 99.4 1.3E-13 2.7E-18 108.6 5.9 126 50-189 26-197 (209)
328 PRK14257 phosphate ABC transpo 99.4 5.5E-14 1.2E-18 122.4 4.2 124 48-186 104-288 (329)
329 PLN03211 ABC transporter G-25; 99.4 1.9E-14 4E-19 135.7 0.7 128 26-183 83-267 (659)
330 PRK14266 phosphate ABC transpo 99.4 9.1E-14 2E-18 116.4 4.7 132 26-187 18-210 (250)
331 PRK11147 ABC transporter ATPas 99.4 2.2E-14 4.9E-19 135.0 1.0 121 48-186 341-501 (635)
332 TIGR01257 rim_protein retinal- 99.4 2.2E-14 4.9E-19 146.8 1.0 125 47-185 1960-2133(2272)
333 PRK14252 phosphate ABC transpo 99.4 9.8E-14 2.1E-18 117.3 4.5 140 26-196 31-233 (265)
334 cd03291 ABCC_CFTR1 The CFTR su 99.4 9.3E-14 2E-18 118.5 4.3 122 50-186 61-223 (282)
335 TIGR00955 3a01204 The Eye Pigm 99.4 8.9E-14 1.9E-18 130.5 4.6 141 26-195 40-239 (617)
336 PLN03073 ABC transporter F fam 99.4 3.3E-14 7.1E-19 134.9 1.6 122 48-186 531-688 (718)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 3.6E-14 7.8E-19 131.6 1.6 121 48-186 344-504 (552)
338 PRK14246 phosphate ABC transpo 99.4 8.9E-14 1.9E-18 117.1 3.4 131 51-197 35-226 (257)
339 PRK11819 putative ABC transpor 99.4 4.2E-14 9E-19 131.3 1.4 148 48-215 346-534 (556)
340 COG0488 Uup ATPase components 99.4 2.3E-13 5.1E-18 124.5 5.8 122 48-177 344-500 (530)
341 TIGR01257 rim_protein retinal- 99.4 3.7E-14 8E-19 145.3 0.4 120 47-172 951-1119(2272)
342 COG4172 ABC-type uncharacteriz 99.4 1.6E-13 3.6E-18 119.1 3.9 155 49-217 33-262 (534)
343 TIGR01271 CFTR_protein cystic 99.4 2.1E-13 4.6E-18 138.5 4.8 105 49-157 1242-1397(1490)
344 COG5265 ATM1 ABC-type transpor 99.4 2.1E-13 4.6E-18 118.8 3.2 108 46-155 283-441 (497)
345 PRK10535 macrolide transporter 99.4 3.5E-13 7.6E-18 127.1 4.7 131 26-185 23-207 (648)
346 cd03278 ABC_SMC_barmotin Barmo 99.4 9.2E-13 2E-17 106.7 6.5 136 54-203 24-195 (197)
347 KOG0054|consensus 99.4 3.4E-13 7.5E-18 133.1 4.4 80 23-117 1152-1234(1381)
348 PF00005 ABC_tran: ABC transpo 99.4 2.7E-13 5.8E-18 103.0 2.8 88 50-142 9-137 (137)
349 TIGR00954 3a01203 Peroxysomal 99.4 5.8E-13 1.3E-17 125.9 5.6 122 47-185 473-642 (659)
350 COG0488 Uup ATPase components 99.4 4E-13 8.7E-18 123.0 4.1 147 50-216 27-242 (530)
351 COG4148 ModC ABC-type molybdat 99.4 7.4E-13 1.6E-17 110.2 5.0 134 52-201 24-205 (352)
352 PLN03140 ABC transporter G fam 99.4 1.7E-13 3.6E-18 138.4 1.2 119 49-172 903-1078(1470)
353 PLN03232 ABC transporter C fam 99.3 5.1E-13 1.1E-17 135.9 4.5 103 48-155 639-782 (1495)
354 KOG0066|consensus 99.3 1.6E-12 3.4E-17 114.2 6.5 132 52-203 613-779 (807)
355 KOG0061|consensus 99.3 6E-13 1.3E-17 124.4 3.6 137 23-183 42-231 (613)
356 PLN03130 ABC transporter C fam 99.3 8E-13 1.7E-17 135.0 4.3 103 48-155 639-782 (1622)
357 TIGR00956 3a01205 Pleiotropic 99.3 5.8E-13 1.3E-17 134.5 3.3 108 49-162 786-951 (1394)
358 PLN03140 ABC transporter G fam 99.3 1.1E-12 2.3E-17 132.6 4.1 42 48-89 187-231 (1470)
359 TIGR00957 MRP_assoc_pro multi 99.3 1.6E-12 3.5E-17 132.4 5.1 124 48-185 660-825 (1522)
360 PLN03073 ABC transporter F fam 99.3 2.2E-12 4.7E-17 122.6 5.1 77 107-203 343-419 (718)
361 COG4136 ABC-type uncharacteriz 99.3 3.8E-12 8.3E-17 97.1 5.4 124 50-186 26-199 (213)
362 KOG0927|consensus 99.3 1.3E-12 2.8E-17 117.0 2.9 140 50-200 414-590 (614)
363 COG4167 SapF ABC-type antimicr 99.3 1.5E-12 3.2E-17 102.4 2.7 117 18-154 20-190 (267)
364 TIGR01271 CFTR_protein cystic 99.3 2E-12 4.4E-17 131.5 3.8 121 50-185 450-611 (1490)
365 cd03270 ABC_UvrA_I The excisio 99.3 2.8E-12 6E-17 106.1 3.6 67 105-185 134-202 (226)
366 TIGR00956 3a01205 Pleiotropic 99.3 2.1E-12 4.5E-17 130.5 3.3 121 49-182 84-270 (1394)
367 COG4778 PhnL ABC-type phosphon 99.3 8.7E-12 1.9E-16 97.0 5.6 39 49-87 34-72 (235)
368 PF07728 AAA_5: AAA domain (dy 99.2 3.5E-11 7.5E-16 91.8 7.8 125 54-193 1-139 (139)
369 COG4178 ABC-type uncharacteriz 99.2 1E-11 2.2E-16 114.0 5.6 139 28-173 396-574 (604)
370 PTZ00243 ABC transporter; Prov 99.2 8.5E-12 1.8E-16 127.3 4.7 122 50-185 684-845 (1560)
371 COG4674 Uncharacterized ABC-ty 99.2 1.6E-12 3.4E-17 103.1 -1.0 38 50-87 29-66 (249)
372 cd03280 ABC_MutS2 MutS2 homolo 99.2 2.4E-11 5.2E-16 98.6 5.7 96 50-153 25-130 (200)
373 cd03279 ABC_sbcCD SbcCD and ot 99.2 2E-11 4.4E-16 100.0 5.1 72 103-185 118-196 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.1 1.4E-10 3.1E-15 96.6 7.9 80 107-200 157-237 (243)
375 COG4170 SapD ABC-type antimicr 99.1 8.2E-12 1.8E-16 100.3 -0.4 81 130-219 175-265 (330)
376 TIGR02640 gas_vesic_GvpN gas v 99.1 7E-09 1.5E-13 87.6 16.6 150 35-200 4-184 (262)
377 KOG0059|consensus 99.1 1E-10 2.3E-15 113.8 5.4 148 42-199 581-774 (885)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.1 4.9E-10 1.1E-14 91.8 8.3 81 107-201 126-207 (212)
379 cd03240 ABC_Rad50 The catalyti 99.1 8.1E-10 1.8E-14 89.9 9.1 69 106-185 113-186 (204)
380 KOG0054|consensus 99.1 8.4E-11 1.8E-15 116.5 3.9 145 26-203 536-720 (1381)
381 cd03283 ABC_MutS-like MutS-lik 99.1 2.5E-10 5.4E-15 92.6 5.6 26 51-76 24-49 (199)
382 cd03271 ABC_UvrA_II The excisi 99.0 1.8E-10 3.9E-15 97.0 3.8 81 104-199 165-245 (261)
383 COG4138 BtuD ABC-type cobalami 99.0 7.4E-10 1.6E-14 86.7 6.6 145 49-199 22-213 (248)
384 COG4615 PvdE ABC-type sideroph 99.0 2.5E-10 5.4E-15 99.3 4.1 46 47-92 344-389 (546)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.0 8.7E-10 1.9E-14 92.3 7.0 82 107-201 154-236 (247)
386 cd03227 ABC_Class2 ABC-type Cl 99.0 8.2E-10 1.8E-14 86.7 6.0 119 53-187 22-146 (162)
387 PHA02244 ATPase-like protein 99.0 2.2E-08 4.8E-13 87.5 14.9 140 41-200 108-260 (383)
388 KOG0062|consensus 99.0 3.9E-10 8.5E-15 100.7 3.9 122 48-178 102-260 (582)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.0 3.5E-09 7.5E-14 85.8 9.2 84 105-199 106-191 (198)
390 cd03273 ABC_SMC2_euk Eukaryoti 99.0 4.5E-10 9.8E-15 94.2 4.1 63 107-181 165-228 (251)
391 cd03243 ABC_MutS_homologs The 99.0 1.2E-09 2.5E-14 88.8 6.3 93 50-152 27-129 (202)
392 KOG0065|consensus 98.9 6.9E-10 1.5E-14 108.5 4.3 113 50-162 815-979 (1391)
393 COG1245 Predicted ATPase, RNas 98.9 2.3E-09 4.9E-14 94.8 7.0 122 27-163 352-505 (591)
394 TIGR01650 PD_CobS cobaltochela 98.9 3.3E-08 7.1E-13 85.4 14.0 151 30-199 45-218 (327)
395 TIGR02858 spore_III_AA stage I 98.9 4E-09 8.7E-14 89.3 7.7 110 53-183 112-230 (270)
396 COG1245 Predicted ATPase, RNas 98.9 7.5E-10 1.6E-14 97.9 1.4 131 50-185 98-285 (591)
397 cd03239 ABC_SMC_head The struc 98.8 9.6E-09 2.1E-13 81.9 7.3 133 54-199 24-173 (178)
398 smart00534 MUTSac ATPase domai 98.8 2E-08 4.4E-13 80.4 6.9 91 55-152 2-99 (185)
399 cd01130 VirB11-like_ATPase Typ 98.8 7.8E-08 1.7E-12 77.1 10.0 93 46-145 19-114 (186)
400 cd03277 ABC_SMC5_euk Eukaryoti 98.7 8.3E-08 1.8E-12 78.7 10.1 83 106-199 124-208 (213)
401 cd01131 PilT Pilus retraction 98.7 1.5E-07 3.3E-12 76.2 11.6 86 54-146 3-89 (198)
402 KOG2355|consensus 98.7 2.6E-08 5.6E-13 80.0 6.5 151 48-214 36-253 (291)
403 KOG0927|consensus 98.7 1E-08 2.2E-13 92.3 4.3 44 107-155 220-263 (614)
404 KOG0060|consensus 98.7 2.2E-08 4.8E-13 90.8 6.1 105 45-154 454-611 (659)
405 cd03282 ABC_MSH4_euk MutS4 hom 98.7 2.1E-08 4.5E-13 81.7 5.3 115 51-186 28-155 (204)
406 PRK11331 5-methylcytosine-spec 98.7 9E-07 1.9E-11 79.5 15.5 155 42-201 184-358 (459)
407 COG2401 ABC-type ATPase fused 98.7 7.8E-09 1.7E-13 90.7 2.3 135 27-189 399-578 (593)
408 cd03281 ABC_MSH5_euk MutS5 hom 98.7 8.6E-08 1.9E-12 78.6 7.8 22 53-74 30-51 (213)
409 COG5271 MDN1 AAA ATPase contai 98.7 4.3E-07 9.3E-12 90.6 13.5 173 12-200 839-1033(4600)
410 TIGR02788 VirB11 P-type DNA tr 98.6 1.6E-07 3.4E-12 81.3 8.8 125 47-198 139-267 (308)
411 cd00009 AAA The AAA+ (ATPases 98.6 1.4E-06 3.1E-11 65.3 12.9 125 52-198 19-149 (151)
412 cd03285 ABC_MSH2_euk MutS2 hom 98.6 2.7E-07 5.9E-12 76.1 9.1 97 51-152 29-133 (222)
413 COG3910 Predicted ATPase [Gene 98.6 1.3E-07 2.9E-12 74.9 6.3 41 131-171 146-186 (233)
414 KOG0064|consensus 98.6 4.1E-08 8.8E-13 88.4 3.1 103 48-155 504-654 (728)
415 cd00820 PEPCK_HprK Phosphoenol 98.5 7.7E-08 1.7E-12 70.0 3.8 60 50-117 13-75 (107)
416 cd03284 ABC_MutS1 MutS1 homolo 98.5 5.4E-07 1.2E-11 74.0 9.3 23 53-75 31-53 (216)
417 KOG0062|consensus 98.5 3.1E-08 6.7E-13 88.8 2.0 120 49-176 387-542 (582)
418 TIGR00630 uvra excinuclease AB 98.5 5.2E-08 1.1E-12 94.8 3.6 80 105-199 825-904 (924)
419 TIGR01069 mutS2 MutS2 family p 98.5 1.4E-07 3.1E-12 90.5 5.7 92 53-152 323-423 (771)
420 TIGR03238 dnd_assoc_3 dnd syst 98.4 1.4E-07 3E-12 84.9 3.8 55 18-89 13-68 (504)
421 PRK00635 excinuclease ABC subu 98.4 9.2E-08 2E-12 97.7 2.3 69 106-185 807-875 (1809)
422 cd03287 ABC_MSH3_euk MutS3 hom 98.4 1.1E-06 2.4E-11 72.4 7.6 33 50-82 29-62 (222)
423 PRK00349 uvrA excinuclease ABC 98.4 1.9E-07 4.1E-12 91.1 3.1 75 106-198 828-905 (943)
424 COG5271 MDN1 AAA ATPase contai 98.4 4.2E-06 9.1E-11 83.9 12.1 146 38-200 1529-1689(4600)
425 PRK10787 DNA-binding ATP-depen 98.4 6.8E-06 1.5E-10 79.3 13.6 167 21-202 314-494 (784)
426 PF00004 AAA: ATPase family as 98.4 5.8E-06 1.3E-10 61.6 10.6 117 55-197 1-128 (132)
427 cd01120 RecA-like_NTPases RecA 98.4 3.6E-06 7.8E-11 64.7 9.7 35 55-89 2-36 (165)
428 PF13177 DNA_pol3_delta2: DNA 98.3 1.2E-05 2.5E-10 63.1 12.0 136 50-200 17-160 (162)
429 TIGR01420 pilT_fam pilus retra 98.3 3.5E-06 7.6E-11 74.0 9.8 29 50-78 120-148 (343)
430 PRK07003 DNA polymerase III su 98.3 8.8E-06 1.9E-10 77.1 12.9 135 52-201 38-178 (830)
431 PRK08699 DNA polymerase III su 98.3 3.3E-06 7.1E-11 73.5 9.4 71 133-216 114-184 (325)
432 PRK14961 DNA polymerase III su 98.3 1.3E-05 2.8E-10 70.9 13.3 147 53-214 39-192 (363)
433 PRK14963 DNA polymerase III su 98.3 7.5E-06 1.6E-10 75.3 12.1 135 52-201 36-175 (504)
434 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.8E-10 70.7 13.8 146 52-215 36-187 (394)
435 PRK12402 replication factor C 98.3 5E-05 1.1E-09 66.0 16.3 154 45-214 27-198 (337)
436 TIGR02524 dot_icm_DotB Dot/Icm 98.3 3.7E-06 8.1E-11 74.1 9.1 87 50-147 132-228 (358)
437 TIGR00763 lon ATP-dependent pr 98.3 1.8E-05 4E-10 76.5 14.0 136 51-202 346-493 (775)
438 PRK12323 DNA polymerase III su 98.3 4.9E-06 1.1E-10 77.7 9.5 136 52-202 38-184 (700)
439 COG0178 UvrA Excinuclease ATPa 98.3 1E-06 2.2E-11 83.0 5.0 73 106-180 820-892 (935)
440 TIGR03345 VI_ClpV1 type VI sec 98.3 2.3E-05 5E-10 76.4 14.4 136 54-201 598-767 (852)
441 PRK08533 flagellar accessory p 98.3 2.8E-06 6.1E-11 70.4 7.0 30 49-78 21-51 (230)
442 PF03193 DUF258: Protein of un 98.2 1.9E-06 4.1E-11 67.3 5.1 54 22-76 3-59 (161)
443 PRK14957 DNA polymerase III su 98.2 1.6E-05 3.5E-10 73.6 12.0 141 45-201 28-178 (546)
444 PF05496 RuvB_N: Holliday junc 98.2 9.6E-05 2.1E-09 60.6 14.9 119 54-200 52-178 (233)
445 PRK14956 DNA polymerase III su 98.2 1.7E-05 3.8E-10 71.9 11.7 153 45-215 30-191 (484)
446 COG2256 MGS1 ATPase related to 98.2 8E-06 1.7E-10 71.7 9.1 121 46-201 40-163 (436)
447 cd01124 KaiC KaiC is a circadi 98.2 5.9E-06 1.3E-10 65.6 7.7 33 55-87 2-34 (187)
448 PRK00409 recombination and DNA 98.2 2.3E-06 5E-11 82.5 6.1 93 52-152 327-428 (782)
449 PLN03025 replication factor C 98.2 4.8E-05 1E-09 66.1 13.7 123 53-201 35-158 (319)
450 PRK09270 nucleoside triphospha 98.2 3.1E-06 6.6E-11 70.1 5.9 36 50-85 31-66 (229)
451 smart00382 AAA ATPases associa 98.2 1.1E-05 2.4E-10 59.8 8.5 29 52-80 2-30 (148)
452 PRK05564 DNA polymerase III su 98.2 0.0001 2.3E-09 63.8 15.6 138 52-216 26-164 (313)
453 PRK14949 DNA polymerase III su 98.2 2.1E-05 4.6E-10 75.8 11.9 134 52-201 38-178 (944)
454 cd03241 ABC_RecN RecN ATPase i 98.2 1.8E-05 3.9E-10 67.3 10.5 81 109-202 171-251 (276)
455 TIGR00678 holB DNA polymerase 98.2 2.3E-05 5.1E-10 62.7 10.5 145 53-216 15-167 (188)
456 PRK06645 DNA polymerase III su 98.2 2E-05 4.3E-10 72.4 11.3 133 53-201 44-187 (507)
457 TIGR02782 TrbB_P P-type conjug 98.2 1.1E-05 2.3E-10 69.6 9.0 34 45-78 125-158 (299)
458 PRK14960 DNA polymerase III su 98.2 3.7E-05 8.1E-10 72.1 12.9 136 52-202 37-178 (702)
459 CHL00181 cbbX CbbX; Provisiona 98.1 6.7E-05 1.4E-09 64.3 13.3 52 29-80 25-87 (287)
460 PTZ00132 GTP-binding nuclear p 98.1 1.8E-06 3.9E-11 70.5 3.6 29 130-158 169-202 (215)
461 cd01129 PulE-GspE PulE/GspE Th 98.1 3.2E-05 6.9E-10 65.5 11.1 106 26-148 58-166 (264)
462 TIGR02903 spore_lon_C ATP-depe 98.1 1.7E-05 3.6E-10 74.8 10.3 27 52-78 175-201 (615)
463 KOG1808|consensus 98.1 7E-06 1.5E-10 83.7 8.2 155 31-200 418-585 (1856)
464 PRK13833 conjugal transfer pro 98.1 1.5E-05 3.3E-10 69.1 9.1 32 45-76 137-168 (323)
465 PRK13894 conjugal transfer ATP 98.1 1.8E-05 4E-10 68.6 9.6 32 45-76 141-172 (319)
466 PRK00440 rfc replication facto 98.1 0.00015 3.3E-09 62.4 15.3 123 54-202 40-162 (319)
467 PRK13851 type IV secretion sys 98.1 1.6E-05 3.4E-10 69.7 9.1 38 47-84 157-194 (344)
468 PRK14964 DNA polymerase III su 98.1 2E-05 4.4E-10 71.9 10.2 134 52-201 35-175 (491)
469 PRK00635 excinuclease ABC subu 98.1 2.2E-06 4.8E-11 87.8 4.2 74 104-179 1695-1768(1809)
470 PRK10865 protein disaggregatio 98.1 5.8E-05 1.3E-09 73.7 13.8 149 54-214 600-780 (857)
471 PHA02544 44 clamp loader, smal 98.1 6.5E-05 1.4E-09 64.9 12.6 112 54-200 45-159 (316)
472 PRK07764 DNA polymerase III su 98.1 6.1E-05 1.3E-09 73.0 13.5 145 52-215 37-190 (824)
473 PRK05707 DNA polymerase III su 98.1 0.00012 2.5E-09 64.0 14.0 148 52-216 22-177 (328)
474 TIGR00368 Mg chelatase-related 98.1 3.7E-05 7.9E-10 70.6 11.2 144 47-197 206-386 (499)
475 COG1222 RPT1 ATP-dependent 26S 98.1 4.2E-05 9.2E-10 66.3 10.8 149 11-190 145-308 (406)
476 PF00437 T2SE: Type II/IV secr 98.1 1.1E-05 2.4E-10 68.2 7.2 98 40-149 114-215 (270)
477 TIGR02030 BchI-ChlI magnesium 98.1 4.2E-05 9E-10 66.9 11.0 27 52-78 25-51 (337)
478 PRK07994 DNA polymerase III su 98.1 6.5E-05 1.4E-09 70.8 12.7 142 45-202 28-179 (647)
479 COG1129 MglA ABC-type sugar tr 98.1 2.2E-06 4.7E-11 77.8 2.9 119 50-173 283-461 (500)
480 PRK10078 ribose 1,5-bisphospho 98.1 2.9E-06 6.2E-11 68.0 3.3 26 52-77 2-27 (186)
481 PRK14958 DNA polymerase III su 98.1 7.9E-05 1.7E-09 68.7 13.1 146 52-214 38-192 (509)
482 PRK14951 DNA polymerase III su 98.1 5.1E-05 1.1E-09 71.2 11.9 136 52-202 38-184 (618)
483 PRK14962 DNA polymerase III su 98.1 6.1E-05 1.3E-09 68.8 12.0 135 53-201 37-176 (472)
484 PF13555 AAA_29: P-loop contai 98.0 4.5E-06 9.8E-11 54.5 3.3 25 53-77 24-48 (62)
485 PRK10416 signal recognition pa 98.0 2.7E-05 5.9E-10 67.6 9.2 40 51-90 113-152 (318)
486 PRK14969 DNA polymerase III su 98.0 2.3E-05 5E-10 72.6 9.1 134 52-201 38-178 (527)
487 COG0470 HolB ATPase involved i 98.0 0.0001 2.2E-09 63.6 12.7 134 54-200 26-167 (325)
488 PRK08451 DNA polymerase III su 98.0 6.7E-05 1.4E-09 69.3 12.0 144 53-214 37-186 (535)
489 PF02463 SMC_N: RecF/RecN/SMC 98.0 1.1E-05 2.5E-10 66.0 6.4 68 108-188 136-205 (220)
490 PRK00300 gmk guanylate kinase; 98.0 3E-06 6.5E-11 68.6 2.7 29 49-77 2-30 (205)
491 PRK14952 DNA polymerase III su 98.0 9.1E-05 2E-09 69.2 12.2 152 45-215 25-188 (584)
492 TIGR00235 udk uridine kinase. 98.0 4.8E-06 1E-10 67.8 3.1 28 51-78 5-32 (207)
493 cd02025 PanK Pantothenate kina 98.0 8.5E-06 1.9E-10 67.1 4.5 31 55-85 2-34 (220)
494 PRK08691 DNA polymerase III su 98.0 3.8E-05 8.2E-10 72.5 9.3 135 52-201 38-178 (709)
495 PRK13900 type IV secretion sys 98.0 5.8E-05 1.3E-09 65.9 9.8 33 47-79 155-187 (332)
496 PRK13764 ATPase; Provisional 98.0 4.8E-05 1E-09 71.0 9.7 87 50-148 255-341 (602)
497 PRK04195 replication factor C 98.0 0.00027 5.9E-09 64.9 14.6 134 37-202 21-161 (482)
498 KOG0989|consensus 98.0 3.2E-05 6.9E-10 65.8 7.7 125 54-201 59-188 (346)
499 PRK09862 putative ATP-dependen 98.0 7E-05 1.5E-09 68.7 10.5 42 45-86 203-244 (506)
500 PF12774 AAA_6: Hydrolytic ATP 98.0 0.0017 3.7E-08 53.8 17.8 168 32-231 12-196 (231)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=2.7e-22 Score=166.67 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=105.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---YGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+|+++|.+++.+|.+.+.+.+....+.+++ ++++
T Consensus 17 il~~ls~~i~~G~i---------------~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 17 ILDDLSFSIPKGEI---------------TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred EEecceEEecCCcE---------------EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 45667777665555 99999999999999999999999998888776654433322221 2333
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+|. -.+.|+|.++++ -+|++.+ |+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv--~iArALa---Q~ 156 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV--LIARALA---QE 156 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH--HHHHHHh---cC
Confidence 222 124566777777 4555555 79
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
++++++|||++.+|+.++-.+++..+.+....| +++++.+||++.|+.- .=.++.|.+.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~--------~tvv~vlHDlN~A~ry---ad~~i~lk~G 215 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKG--------LTVVMVLHDLNLAARY---ADHLILLKDG 215 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCHHHHHHh---CCEEEEEECC
Confidence 999999999999999999999998887766555 8999999999988654 2235555543
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.1e-22 Score=162.73 Aligned_cols=144 Identities=21% Similarity=0.283 Sum_probs=105.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----ccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~----~~~~~l~g~ 101 (233)
+++++++.+.++.+ ++|+|||||||||++++++++-.+.+|.+.+.+.+... ...++-.|+
T Consensus 17 VLkgi~l~v~~Gev---------------v~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 17 VLKGISLSVEKGEV---------------VVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EecCcceeEcCCCE---------------EEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 56677777765555 99999999999999999999999888888776532200 001111222
Q ss_pred c------------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 102 L------------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 102 ~------------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+ +..+...|+|+.+|+ ++|++++ .+|+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRV--AIARALa---M~P~ 156 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRV--AIARALA---MDPK 156 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHH--HHHHHHc---CCCC
Confidence 2 222346788999998 7788776 7999
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
+++|||||+++|+|....+++-.+.+.-. | +++++.||++..|.-- .=.+++|++-
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~e-G--------mTMivVTHEM~FAr~V---adrviFmd~G 212 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEE-G--------MTMIIVTHEMGFAREV---ADRVIFMDQG 212 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHc-C--------CeEEEEechhHHHHHh---hheEEEeeCC
Confidence 99999999999999999999876665433 3 6788888888877554 2457777765
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.5e-22 Score=161.29 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=100.7
Q ss_pred HHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--------------
Q psy12735 24 ETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN-------------- 89 (233)
Q Consensus 24 ~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~-------------- 89 (233)
..++++++|.+.++.+ |+|+||||||||||+++++|+.++.+|.+.+.+..
T Consensus 16 ~~vl~~i~L~v~~GEf---------------vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 16 VEVLEDINLSVEKGEF---------------VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred eEEeccceeEECCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 3577888888877766 99999999999999999999999888876654321
Q ss_pred ----C--------------c----------cccccccc---ccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 90 ----P--------------K----------AVSVIELY---GVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 90 ----~--------------~----------~~~~~~l~---g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
| . +....+.+ |+-+.-+++.|+|+.+|+ .++++++ .+|+++++|
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV--aiARAL~---~~P~lLLlD 155 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV--AIARALA---TRPKLLLLD 155 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH--HHHHHHh---cCCCEEEEc
Confidence 1 0 00001112 333445678999999999 8888776 799999999
Q ss_pred CCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 139 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
||.+++|..+...+.++...+....+ .++++.|||+..|
T Consensus 156 EPFgALDalTR~~lq~~l~~lw~~~~--------~TvllVTHdi~EA 194 (248)
T COG1116 156 EPFGALDALTREELQDELLRLWEETR--------KTVLLVTHDVDEA 194 (248)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhC--------CEEEEEeCCHHHH
Confidence 99999999887777666554444333 7899999999876
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4e-21 Score=158.99 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=104.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC-
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP- 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~- 104 (233)
++++++|.+.++.+ ++|+||||||||||+|++.|++.+..|.+.+.+.+.........+||++|
T Consensus 19 vl~~i~l~v~~G~~---------------~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~ 83 (254)
T COG1121 19 VLEDISLSVEKGEI---------------TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQK 83 (254)
T ss_pred eeeccEEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcc
Confidence 67788888877666 99999999999999999999999888887765433211111122333322
Q ss_pred ----------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 105 ----------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 105 ----------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.-.+.|+|.++|+ .+|++++ ++|
T Consensus 84 ~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV--~lARAL~---~~p 158 (254)
T COG1121 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV--LLARALA---QNP 158 (254)
T ss_pred cccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH--HHHHHhc---cCC
Confidence 2235678888888 5666665 799
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
++++||||+.+.|+.+...+++..+.+.-. | +.+++.+|||..+..-+ =.+++++..
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g--------~tIl~vtHDL~~v~~~~---D~vi~Ln~~ 215 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G--------KTVLMVTHDLGLVMAYF---DRVICLNRH 215 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCcHHhHhhC---CEEEEEcCe
Confidence 999999999999999998888877766555 4 78888888888775431 245555544
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=1.9e-20 Score=152.74 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=105.7
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---------
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV--------- 95 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~--------- 95 (233)
+++++++|.+.++.+ |+|+||||||||||++++.++..+++|.+.+.+.+....+.
T Consensus 19 ~~L~~v~l~i~~Ge~---------------vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 19 EALKDVNLEIEAGEF---------------VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EecccceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 467777888766555 99999999999999999999999988887665432211000
Q ss_pred ------------------------------------------ccccccc---c-CCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 96 ------------------------------------------IELYGVL---N-PETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 96 ------------------------------------------~~l~g~~---~-~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
.+.+|.- . ..+.+.|+|..||+ ++|++..
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV--AIARAL~--- 158 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV--AIARALI--- 158 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH--HHHHHHh---
Confidence 0111221 1 23457888999998 7777766
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
.+|++++.||||.++|.++-..+++..+.+....| ..+++.|||...|+-+ =.++++.+
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g--------~tii~VTHd~~lA~~~----dr~i~l~d 217 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERG--------KTIIMVTHDPELAKYA----DRVIELKD 217 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC--------CEEEEEcCCHHHHHhC----CEEEEEeC
Confidence 69999999999999999999999988777665555 6888999998877654 24445544
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.79 E-value=3.1e-20 Score=151.96 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=101.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++.+ ++++|||||||||++|+++++..++.|.+.+++.+....+ ++.-+||+
T Consensus 16 av~~v~l~I~~gef---------------~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 16 AVDDVNLTIEEGEF---------------LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeeeEEecCCeE---------------EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 56778888777666 9999999999999999999999999988877654432211 11112222
Q ss_pred -------------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 103 -------------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 103 -------------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+.-+++.|+|..+|+ .++++.+ .+|.
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV--Gv~RALA---adP~ 155 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV--GVARALA---ADPP 155 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH--HHHHHHh---cCCC
Confidence 223456777888887 4455444 5899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
++++|||.+++|+-+...+-++...+...-| .+++|.|||++.|-- +-.|.+++.
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~--------kTivfVTHDidEA~k-Ladri~vm~ 210 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELG--------KTIVFVTHDIDEALK-LADRIAVMD 210 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhC--------CEEEEEecCHHHHHh-hhceEEEec
Confidence 9999999999999998887776655544444 799999999997632 234444443
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.5e-19 Score=147.15 Aligned_cols=164 Identities=21% Similarity=0.242 Sum_probs=117.2
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee----------------
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL---------------- 88 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~---------------- 88 (233)
.++++++|.+.+|. +++|+|+||||||||.++|+|+.++..|.+.+.+.
T Consensus 21 ~~l~~VS~~i~~Ge---------------~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 21 HALNNVSLEIERGE---------------TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred hhhcceeEEecCCC---------------EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence 56777777776555 59999999999999999999999888777665431
Q ss_pred ----------CCc---------ccc----------cccc---cc----cccCCCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 89 ----------NPK---------AVS----------VIEL---YG----VLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 89 ----------~~~---------~~~----------~~~l---~g----~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+|. .+. ..++ +| +.+..++++++|.++|+ .++++.. .+|
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi--aIARAL~---~~P 160 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI--AIARALI---PEP 160 (252)
T ss_pred EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH--HHHHHhc---cCC
Confidence 110 000 0111 11 23344678999999999 7777776 699
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC----------
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN---------- 202 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~---------- 202 (233)
+++++|||++++|+.....+++....+....+ +.++|.+||+..+.- +-.||++++-+.-.
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~--------lt~l~IsHdl~~v~~-~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERG--------LTYLFISHDLALVEH-MCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcC--------ceEEEEeCcHHHHHH-HhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999887665554444 899999999997755 45788887776421
Q ss_pred CcchHHHHHHHhhcc
Q psy12735 203 LGYQPYWTRWVNLNV 217 (233)
Q Consensus 203 ~~~~~~~~swl~~~~ 217 (233)
..-++|+...+...+
T Consensus 232 ~~~h~ytr~Ll~a~~ 246 (252)
T COG1124 232 HPSHPYTRELLEAVP 246 (252)
T ss_pred CCccHHHHHHHHhhh
Confidence 134566666665443
No 8
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=5.8e-19 Score=146.41 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=127.7
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-------ccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-------VIE 97 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-------~~~ 97 (233)
.++.+++|.+.++. .++|||.|||||||+-+++.++..+++|.+.+.+.+...++ ..+
T Consensus 27 ~avd~Vsf~i~~ge---------------~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~e 91 (268)
T COG4608 27 KAVDGVSFSIKEGE---------------TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLE 91 (268)
T ss_pred EEecceeEEEcCCC---------------EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHH
Confidence 45677777776555 59999999999999999999999999999998876542221 112
Q ss_pred c---cc----cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEcc
Q psy12735 98 L---YG----VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170 (233)
Q Consensus 98 l---~g----~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~ 170 (233)
+ .| +....++++++|++||+ .+|++.+ -+|+++++|||++++|.....+++.....+....|
T Consensus 92 lL~~Vgl~~~~~~ryPhelSGGQrQRi--~IARALa---l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~------ 160 (268)
T COG4608 92 LLEKVGLPEEFLYRYPHELSGGQRQRI--GIARALA---LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG------ 160 (268)
T ss_pred HHHHhCCCHHHhhcCCcccCchhhhhH--HHHHHHh---hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC------
Confidence 2 22 23345789999999999 6666665 59999999999999999888887776555544434
Q ss_pred CcceEEEEeCCcCccChhhhhcceEEEECCC--------CC--cchHHHHHHHhhcccccH
Q psy12735 171 AHCQLLFEVGDLQYASPATVSRAGMVYVDPI--------NL--GYQPYWTRWVNLNVKADE 221 (233)
Q Consensus 171 ~~~~~i~et~dl~~~sPa~isr~~~v~~~~~--------~~--~~~~~~~swl~~~~~~~~ 221 (233)
++.+|.+||++.+.- .-.|.+++|.+.- .+ .-+||+.+.+...|.+.+
T Consensus 161 --lt~lFIsHDL~vv~~-isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~~~p 218 (268)
T COG4608 161 --LTYLFISHDLSVVRY-ISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPVPDP 218 (268)
T ss_pred --CeEEEEEEEHHhhhh-hcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHhCCccch
Confidence 889999999997744 3569999999852 12 458999999998875443
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=9e-20 Score=147.75 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=98.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc------c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL------Y 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l------~ 99 (233)
+++++++.+.++.. |+|+||||||||||+++|+|+..+..|.+.+.+..+.....+++ .
T Consensus 19 aL~~Vnl~I~~GE~---------------VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 19 ALKDVNLEINQGEM---------------VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred eeeeEeEEeCCCcE---------------EEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 56777777766665 99999999999999999999998888877765544322211111 1
Q ss_pred ccccC-------------------------------------------------------CCCcCchhHHHHHHHHHhcC
Q psy12735 100 GVLNP-------------------------------------------------------ETRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 100 g~~~~-------------------------------------------------------~~~~~~~gi~~~~~~~~~~~ 124 (233)
|++.| .....|+|..+|+ .+|++
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV--aIARa 161 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV--AIARA 161 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH--HHHHH
Confidence 22111 1124456666666 56665
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+. ++|++++.|||++++|+++...+++..+.++...| .++++..|+++.|
T Consensus 162 L~---Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g--------~Tvi~nLH~vdlA 211 (258)
T COG3638 162 LV---QQPKIILADEPVASLDPESAKKVMDILKDINQEDG--------ITVIVNLHQVDLA 211 (258)
T ss_pred Hh---cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC--------CEEEEEechHHHH
Confidence 54 79999999999999999999999999888887777 8999999999866
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.6e-19 Score=142.34 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=94.5
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcC-----CCeEEeeeCCcc-----cc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG-----YPARTYTLNPKA-----VS 94 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~-----~~i~~~~~~~~~-----~~ 94 (233)
++++++++.+.+..+ ++++|||||||||+++++++...... |.+.+.+.+... ..
T Consensus 21 ~aL~~i~l~i~~~~V---------------TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 21 HALKDINLDIPKNKV---------------TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred hhhccCceeccCCce---------------EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 466777777766665 99999999999999999998765332 445444433211 11
Q ss_pred cccccccccCCCC--------------------------------------------------cCchhHHHHHHHHHhcC
Q psy12735 95 VIELYGVLNPETR--------------------------------------------------DWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 95 ~~~l~g~~~~~~~--------------------------------------------------~~~~gi~~~~~~~~~~~ 124 (233)
++.-.|++-|.+. ..++|+.+|+ .+|++
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL--cIARa 163 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL--CIARA 163 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH--HHHHH
Confidence 2222344433332 3455666665 44444
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
.+ -+|+++++|||++++|+.+...+-+....| .++.++++.||++.+|+.. -.+.+..|++
T Consensus 164 lA---v~PeVlLmDEPtSALDPIsT~kIEeLi~eL----------k~~yTIviVTHnmqQAaRv-SD~taFf~~G 224 (253)
T COG1117 164 LA---VKPEVLLMDEPTSALDPISTLKIEELITEL----------KKKYTIVIVTHNMQQAARV-SDYTAFFYLG 224 (253)
T ss_pred Hh---cCCcEEEecCcccccCchhHHHHHHHHHHH----------HhccEEEEEeCCHHHHHHH-hHhhhhhccc
Confidence 44 489999999999999998876664443322 1357999999999998763 3455556655
No 11
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=1e-18 Score=136.54 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=116.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc----------------------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV---------------------------------- 93 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~---------------------------------- 93 (233)
.+..++.|+|+||||||||||+++++|+..|..|.+.+++.+....
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 4566788999999999999999999999998888877655432100
Q ss_pred --------------ccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 94 --------------SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 94 --------------~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
..-.+-|+.+.-+.+.++|..+++ ++++... .+..++++|||.+++|+......++....+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv--ALARclv---R~~PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV--ALARCLV---REQPILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH--HHHHHHh---ccCCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 000112334444567888999988 6665543 456678899999999999988888877777
Q ss_pred cccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHHHHhhcc
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVNLNV 217 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~swl~~~~ 217 (233)
+-+.+ +++++.||+++.+.-. .-.+++++.-.+.|..-++..+++..
T Consensus 176 ~~E~~--------~TllmVTH~~~Da~~i---a~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 176 CDERK--------MTLLMVTHHPEDAARI---ADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHhhC--------CEEEEEeCCHHHHHHh---hhceEEEeCCEEEeeccHHHHhccCC
Confidence 76655 8999999999877554 35688899999999988999888764
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=9.4e-19 Score=149.86 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=94.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--ccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--VSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~ 103 (233)
++++++|.+.++.+ ++|+|||||||||++|+|+|...+.+|.+.+.+.++.. ....+.+|++.
T Consensus 20 ~l~~vs~~i~~Gei---------------~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 20 ALDGVSFEVEPGEI---------------FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred EEeceeEEEcCCeE---------------EEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 56777788776665 99999999999999999999999999988876644321 11111222222
Q ss_pred CC-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PE-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
+. ...+|.|+.+++ .++.+.. .+|++++
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl--~ia~aL~---~~P~lli 159 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRL--SIALALL---HDPELLI 159 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 21 234666777777 4444443 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
||||++++|+.....+.+..+.+...++ ..+++.+|.+..+-
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~~~g~--------~tvlissH~l~e~~ 201 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELAKEGG--------VTILLSTHILEEAE 201 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHhCCC--------cEEEEeCCcHHHHH
Confidence 9999999999999999888887776664 45555566655543
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.74 E-value=5.7e-19 Score=152.84 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=103.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---------- 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---------- 95 (233)
+++++++.+.++.+ +.|+|||||||||++++|+|+..+++|.+.+.+.+...+..
T Consensus 20 av~~isl~i~~Gef---------------~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 20 AVDDISLDIKKGEF---------------VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEecceeeecCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 45667777766555 99999999999999999999999999987664322211000
Q ss_pred ------------------------------------cccc---ccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 96 ------------------------------------IELY---GVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 96 ------------------------------------~~l~---g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
.++. ++....+++.|+|..+|+ ++|++++ .+|++++
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV--ALARAL~---~~P~vLL 159 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV--ALARALV---PEPKVLL 159 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH--HHHHHhh---cCcchhh
Confidence 0011 122233457788999998 7777776 6999999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
||||.+++|..-...+..+.+.+....| .++++.|||-..|- ++-.|++++.-+
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~g--------iT~i~VTHDqeEAl-~msDrI~Vm~~G 213 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELG--------ITFVYVTHDQEEAL-AMSDRIAVMNDG 213 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcC--------CeEEEEECCHHHHh-hhccceEEccCC
Confidence 9999999999988887777776665556 88999999987662 233455554443
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.6e-19 Score=148.75 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc------c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL------Y 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l------~ 99 (233)
++++++|.+.++.+ .+|+|.||+|||||+++++++-.|++|++.+.+.+...++..++ +
T Consensus 21 al~~vsL~I~~GeI---------------~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~I 85 (339)
T COG1135 21 ALDDVSLEIPKGEI---------------FGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKI 85 (339)
T ss_pred eeccceEEEcCCcE---------------EEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhc
Confidence 56777888766665 99999999999999999999999999988776644322211111 2
Q ss_pred ccccC-----------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNP-----------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~-----------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
|++.| .+.+.|+|..+++ .+|++++ .+|
T Consensus 86 GMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV--aIARALa---~~P 160 (339)
T COG1135 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV--AIARALA---NNP 160 (339)
T ss_pred cEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH--HHHHHHh---cCC
Confidence 22222 2335677888887 6666665 699
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCc-eEEEccCcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANG-ERIRLLAHCQLL 176 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g-~~i~~~~~~~~i 176 (233)
+++++||+|+++|+++..++++..+.++..-| +++.++|.|.++
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vv 205 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV 205 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence 99999999999999999999998777766544 444444444433
No 15
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.5e-18 Score=138.58 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=90.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc------------------------ccc-----
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL------------------------YGV----- 101 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l------------------------~g~----- 101 (233)
.|+.++|+||||+||||++|.|+|.+.+.+|.+.+++.+.......++ +|.
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 344599999999999999999999999999888876655422221111 111
Q ss_pred -----------------------ccCCCCcCchhHHHHHHHHHhcCCC---CCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 102 -----------------------LNPETRDWYDGLLSNIFRAVNKPLD---PGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 102 -----------------------~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
-..+....++|-.+++ .+++.++ .....++|++||||++++|+......+..
T Consensus 106 g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRV--qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 106 GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV--QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHH--HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 1111224566766666 3333221 01235689999999999999999999988
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+.++..++ .++...|||+.++- .-.|..+++
T Consensus 184 aR~la~~g~---------~V~~VLHDLNLAA~-YaDrivll~ 215 (259)
T COG4559 184 ARQLAREGG---------AVLAVLHDLNLAAQ-YADRIVLLH 215 (259)
T ss_pred HHHHHhcCC---------cEEEEEccchHHHH-hhheeeeee
Confidence 888876655 67777889987754 233444433
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.8e-19 Score=138.91 Aligned_cols=150 Identities=14% Similarity=0.184 Sum_probs=109.8
Q ss_pred HHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----------
Q psy12735 23 LETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA---------- 92 (233)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~---------- 92 (233)
..++|++++|...++.+ ++|.||||+||||++++|+.++.|+.|.+.+.+++...
T Consensus 14 ~v~AvrdVSF~ae~Gei---------------~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 14 KVQAVRDVSFEAEEGEI---------------TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred HHhhhhheeEEeccceE---------------EEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 45678999999988887 99999999999999999999999999998887665411
Q ss_pred -----------cccccc---cc-------------------------cccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 93 -----------VSVIEL---YG-------------------------VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 93 -----------~~~~~l---~g-------------------------~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
++..+. || +.+.....|+.|+.+++ .+|++.. ++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV--~iARAlv---h~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKV--AIARALV---HDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHH--HHHHHHh---cCCC
Confidence 111110 11 11122236777888888 6666664 7999
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
+++||||++++|+.+...+.+....+.-+ +..++|.+|.+..+- +.-.|..+++-+.-.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~e---------gr~viFSSH~m~Eve-alCDrvivlh~Gevv 212 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNE---------GRAVIFSSHIMQEVE-ALCDRVIVLHKGEVV 212 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcC---------CcEEEEecccHHHHH-HhhheEEEEecCcEE
Confidence 99999999999999999988876665433 357888888888763 344566666666543
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=9.7e-19 Score=142.16 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=109.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc------c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL------Y 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l------~ 99 (233)
++++++|.+.++.+ ++|+|||||||||++|++.|++++..|.+.+.+.+...++..++ +
T Consensus 23 Ild~v~l~V~~Gei---------------~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 23 ILDGVDLDVPRGEI---------------LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EecCceeeecCCcE---------------EEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 56677888776665 99999999999999999999999999988876655422221111 1
Q ss_pred cc-------------------------------------------------ccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 100 GV-------------------------------------------------LNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 100 g~-------------------------------------------------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
|. .+..+.+.++|+..|+ .+|++.+ .
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv--aLARAia---l 162 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV--ALARAIA---L 162 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH--HHHHHHh---c
Confidence 11 1223447788888888 6666665 6
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC-------CCC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP-------INL 203 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~-------~~~ 203 (233)
+|+++++|||++++|+-+...+-+..+.+.-.-| .+.++.|||+..+-. +..|..+++=+. +++
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg--------~T~i~VTHDl~s~~~-i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALG--------LTVIMVTHDLDSLLT-IADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC--------CEEEEEECChHHHHh-hhceEEEEeCCEEEEeCCHHHH
Confidence 8999999999999999987666555555444323 677777888776533 234555554331 111
Q ss_pred --cchHHHHHHHhhc
Q psy12735 204 --GYQPYWTRWVNLN 216 (233)
Q Consensus 204 --~~~~~~~swl~~~ 216 (233)
+-.|++..+++..
T Consensus 234 ~~sd~P~v~qf~~G~ 248 (263)
T COG1127 234 LASDDPWVRQFFNGI 248 (263)
T ss_pred HhCCCHHHHHHhcCC
Confidence 3356666666644
No 18
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.73 E-value=4e-18 Score=144.31 Aligned_cols=164 Identities=23% Similarity=0.268 Sum_probs=117.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-h----cCCCeEEeee------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-V----LGYPARTYTL------------ 88 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-~----~~~~i~~~~~------------ 88 (233)
++++++|++.++. .++|||.|||||||+.+.++|++. + .+|.+.+.+.
T Consensus 20 av~~vs~~i~~GE---------------~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~ 84 (316)
T COG0444 20 AVDGVSFELKKGE---------------ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRK 84 (316)
T ss_pred EEeceeEEEcCCc---------------EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHh
Confidence 4566677765555 599999999999999999999886 2 2344433221
Q ss_pred -----------------CC---------------ccc-c-------cccc---ccc------ccCCCCcCchhHHHHHHH
Q psy12735 89 -----------------NP---------------KAV-S-------VIEL---YGV------LNPETRDWYDGLLSNIFR 119 (233)
Q Consensus 89 -----------------~~---------------~~~-~-------~~~l---~g~------~~~~~~~~~~gi~~~~~~ 119 (233)
|| ... + ..++ .|. .+.-++++|+|+.||++-
T Consensus 85 iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~I 164 (316)
T COG0444 85 IRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMI 164 (316)
T ss_pred hcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHH
Confidence 11 000 0 0011 222 233467899999999966
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
+++-+ .+|++++.||||+++|+..+.++++..+.+....| +.++|.|||+..++-. -.|+.++|-+
T Consensus 165 Amala-----~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~--------~aiilITHDl~vva~~-aDri~VMYaG 230 (316)
T COG0444 165 AMALA-----LNPKLLIADEPTTALDVTVQAQILDLLKELQREKG--------TALILITHDLGVVAEI-ADRVAVMYAG 230 (316)
T ss_pred HHHHh-----CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHHh-cceEEEEECc
Confidence 65543 48999999999999999999999998777765444 8999999999987653 5789999987
Q ss_pred C--------CCC--cchHHHHHHHhhccc
Q psy12735 200 P--------INL--GYQPYWTRWVNLNVK 218 (233)
Q Consensus 200 ~--------~~~--~~~~~~~swl~~~~~ 218 (233)
. +.+ .-+||+...++..|.
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHHhCcc
Confidence 3 233 347999999998874
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.6e-18 Score=148.07 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=99.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI--------- 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~--------- 96 (233)
+++++++.+.++.+ ++|+|||||||||++++++|+..+++|.+.+.+-+...+...
T Consensus 18 ~l~~i~l~i~~Gef---------------~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 18 VLKDVNLDIEDGEF---------------VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred eeecceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 45667777766555 999999999999999999999999998876643222111100
Q ss_pred ---------------------------------------cccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 97 ---------------------------------------ELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 97 ---------------------------------------~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
++-++.+..+...|+|..|++ +++++.. .+|++++|
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV--AlaRAlV---r~P~v~L~ 157 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV--ALARALV---RKPKVFLL 157 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH--HHHHHHh---cCCCEEEe
Confidence 011123344557788888888 6666654 69999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
|||.+.+|.....++..+.+.+...-| .+.|..|||-..|- ++-.|.+++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~--------~T~IYVTHDq~EAm-tladri~Vm~ 208 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLG--------TTTIYVTHDQVEAM-TLADRIVVMN 208 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcC--------CcEEEEcCCHHHHH-hhCCEEEEEe
Confidence 999999999987777666665544433 67777788876552 2334556555
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.72 E-value=4.3e-18 Score=133.86 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=95.8
Q ss_pred HHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc-----
Q psy12735 24 ETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL----- 98 (233)
Q Consensus 24 ~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l----- 98 (233)
.+++++++|.+.++.+ +.|+|||||||||++|+|.+...++.|++.+.+.+...+.-.++
T Consensus 15 ~~aL~~vs~~i~~Gef---------------~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 15 REALRDVSFHIPKGEF---------------VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred chhhhCceEeecCceE---------------EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 4688899999888776 99999999999999999999999998888776655433222211
Q ss_pred -cccccCC-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 99 -YGVLNPE-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 99 -~g~~~~~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
+|.+-|+ +.+.|+|-.|++ .+|++.. .
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRv--aIARAiV---~ 154 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRV--AIARAIV---N 154 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHH--HHHHHHc---c
Confidence 3333332 235566777777 5555544 5
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+|.+++.|||+..+|++.-..++.....++.-+ +++++-|||...+
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G---------tTVl~ATHd~~lv 200 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG---------TTVLMATHDLELV 200 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC---------cEEEEEeccHHHH
Confidence 899999999999999999888776555444443 5666667766543
No 21
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=3.4e-18 Score=134.48 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=92.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----ccccccccCCCCcCchhHHHHHHHHHhcCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPETRDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~ 126 (233)
+|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+. ....+++.+ +++|..+++ .++++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----LS~G~~qrl--~laral~ 98 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ----LSVGERQMV--EIARALA 98 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----cCHHHHHHH--HHHHHHh
Confidence 444599999999999999999999999999998877655433221 223555544 899999999 6666554
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|+++++|||++++|.++...+.+..+.+... + ..+++.+||+..+. .+..|+.++
T Consensus 99 ---~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~--------~tiii~sh~~~~~~-~~~d~~~~l 155 (163)
T cd03216 99 ---RNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-G--------VAVIFISHRLDEVF-EIADRVTVL 155 (163)
T ss_pred ---cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHHH-HhCCEEEEE
Confidence 589999999999999999988887766554322 2 57778788877543 233344433
No 22
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=4e-18 Score=135.61 Aligned_cols=115 Identities=21% Similarity=0.165 Sum_probs=88.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
+.+|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.. +++..|.. ..+.|..+++ .++++..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~-~LSgGq~qrv--~laral~-- 87 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------PVYKPQYI-DLSGGELQRV--AIAAALL-- 87 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------EEEEcccC-CCCHHHHHHH--HHHHHHh--
Confidence 45677799999999999999999999999999998875432 34444432 2899999999 6666554
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|+++++|||++++|.+....+.+....+...++ ..+++.+||+..+.
T Consensus 88 -~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~--------~tiiivsH~~~~~~ 136 (177)
T cd03222 88 -RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK--------KTALVVEHDLAVLD 136 (177)
T ss_pred -cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCC--------CEEEEEECCHHHHH
Confidence 68999999999999999998888776554432222 56777788876653
No 23
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.71 E-value=6.1e-18 Score=138.84 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=88.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-------VIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-------~~~l 98 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....
T Consensus 19 il~~~s~~i~~G~---------------~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (218)
T cd03255 19 ALKGVSLSIEKGE---------------FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83 (218)
T ss_pred EEeeeEEEEcCCC---------------EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhc
Confidence 5667777776555 49999999999999999999999888887766543321111 0111
Q ss_pred cccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
++++.|.. ..+++|..+++ .++++.. .+
T Consensus 84 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~ 158 (218)
T cd03255 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV--AIARALA---ND 158 (218)
T ss_pred EEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHH--HHHHHHc---cC
Confidence 22222221 23344555554 3444333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
|++++||||++++|+.....+.+....+....+ ..+++.+||+..+.
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~sH~~~~~~ 205 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAG--------TTIVVVTHDPELAE 205 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC--------CeEEEEECCHHHHh
Confidence 999999999999999998888776555433223 67888888887653
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-18 Score=142.60 Aligned_cols=135 Identities=17% Similarity=0.213 Sum_probs=94.8
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc----ccccccccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----AVSVIELYG 100 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~----~~~~~~l~g 100 (233)
.+++++++.+.++. .++|+|+|||||||++++++|++.+..|.+.+.+.+.. .....+..|
T Consensus 18 ~~l~~v~~~i~~Ge---------------~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 18 AALKDVSLEIEKGE---------------RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eeeeeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 45667777776555 49999999999999999999999999888866554422 111222334
Q ss_pred cccCC------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPE------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++-|. ++..|+|..+++ .+|...+ .+|
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRv--aIA~vLa---~~P 157 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRV--AIAGVLA---MGP 157 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeH--HhhHHHH---cCC
Confidence 33332 233444444444 4443333 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++++||||++++|+.....+++..+.+...+| .++|+.|||+..+..
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~--------~tii~~tHd~~~~~~ 204 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEEGG--------KTIIIVTHDLELVLE 204 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC--------CeEEEEeCcHHHHHh
Confidence 99999999999999999999888777766655 577777788777655
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.69 E-value=3.3e-18 Score=149.36 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~~l~ 99 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|..++..|.+.+.+.+....+. ..-+
T Consensus 20 ~L~~vsl~i~~Gei---------------~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~I 84 (343)
T TIGR02314 20 ALNNVSLHVPAGQI---------------YGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI 84 (343)
T ss_pred EEeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCE
Confidence 56777777766655 99999999999999999999999888887765543322111 1123
Q ss_pred ccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
|++.|.. ..+|+|..+++ .++++.+ .+|
T Consensus 85 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV--~IARAL~---~~P 159 (343)
T TIGR02314 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV--AIARALA---SNP 159 (343)
T ss_pred EEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHH---hCC
Confidence 3333322 23455555555 4444443 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+++++|||++++|+.+...+++..+.+....| .++++.||++..+.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g--------~tiiliTH~~~~v~ 205 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLG--------LTILLITHEMDVVK 205 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHH
Confidence 99999999999999999998887666544323 56777777776553
No 26
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.69 E-value=2.4e-17 Score=130.85 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=95.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++.++.+.+ |+.++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 17 ~l~~~~~~i~~---------------Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 17 VLRNVSFSIEP---------------GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred ceeeeEEEECC---------------CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 45666666655 4459999999999999999999999998998887665432221 12335555
Q ss_pred cCCCCc---------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcc
Q psy12735 103 NPETRD---------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 103 ~~~~~~---------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
.+.... +++|..+++ .++++.. .+|++++||||++++|+.....+++..+.+.. .| .
T Consensus 82 ~q~~~~~~~tv~~~lLS~G~~qrv--~la~al~---~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~ 147 (173)
T cd03246 82 PQDDELFSGSIAENILSGGQRQRL--GLARALY---GNPRILVLDEPNSHLDVEGERALNQAIAALKA-AG--------A 147 (173)
T ss_pred CCCCccccCcHHHHCcCHHHHHHH--HHHHHHh---cCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CC--------C
Confidence 554321 678888888 6666554 68999999999999999998888776554421 23 6
Q ss_pred eEEEEeCCcCcc
Q psy12735 174 QLLFEVGDLQYA 185 (233)
Q Consensus 174 ~~i~et~dl~~~ 185 (233)
.+++.+||+..+
T Consensus 148 tii~~sh~~~~~ 159 (173)
T cd03246 148 TRIVIAHRPETL 159 (173)
T ss_pred EEEEEeCCHHHH
Confidence 788888988765
No 27
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.69 E-value=2.7e-17 Score=154.70 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=93.2
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+..|+.|+|+|+||||||||+|+|.|++.+..|.+.+++.+.+.++.. +-+|++.|+...|++.+.+|+.-
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 34455666999999999999999999999999999999988887655543 44677777777666666555521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.+|++. ..+|++++||||++++|.++-..+.+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL---l~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL---LSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh---ccCCCEEEEeCcccccCHhHHHHHHH
Confidence 223322 25999999999999999999988887
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
....+. ++.++|+.+|.++.+
T Consensus 651 ~L~~~~----------~~~T~I~IaHRl~ti 671 (709)
T COG2274 651 NLLQIL----------QGRTVIIIAHRLSTI 671 (709)
T ss_pred HHHHHh----------cCCeEEEEEccchHh
Confidence 654432 225677777775543
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.69 E-value=4e-17 Score=143.42 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=96.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l 98 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+. ...
T Consensus 8 ~l~~vs~~i~~Ge---------------i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~ 72 (363)
T TIGR01186 8 GVNDADLAIAKGE---------------IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72 (363)
T ss_pred eEEeeEEEEcCCC---------------EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCc
Confidence 3456666665544 599999999999999999999999988888775544322111 112
Q ss_pred cccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+|++.|.. ..+|+|+.+++ .++++.+ .+
T Consensus 73 i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV--~lARAL~---~~ 147 (363)
T TIGR01186 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRV--GLARALA---AE 147 (363)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHH--HHHHHHh---cC
Confidence 33333322 23455555555 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|+.....+.+....+....+ .++++.|||+..+.. +..|+.++
T Consensus 148 p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~--------~Tii~vTHd~~ea~~-~~drI~vl 203 (363)
T TIGR01186 148 PDILLMDEAFSALDPLIRDSMQDELKKLQATLQ--------KTIVFITHDLDEAIR-IGDRIVIM 203 (363)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 999999999999999999888877665543323 688888999987633 33455444
No 29
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=2.6e-17 Score=130.32 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=97.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++++|.+.+.+|.+.+.+.+..... .....+++
T Consensus 17 ~l~~i~~~i~~G~---------------~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 17 VLKDVSLTIKPGE---------------KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred cccceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 5666777765555 59999999999999999999999988898877665432211 12234554
Q ss_pred cCCCCc---------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcc
Q psy12735 103 NPETRD---------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 103 ~~~~~~---------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
.+.... ++.|..+++ .++++.. .+|+++++|||++++|......+.+....+. . +.
T Consensus 82 ~~~~~~~~~t~~e~lLS~G~~~rl--~la~al~---~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~--------~~ 146 (171)
T cd03228 82 PQDPFLFSGTIRENILSGGQRQRI--AIARALL---RDPPILILDEATSALDPETEALILEALRALA--K--------GK 146 (171)
T ss_pred cCCchhccchHHHHhhCHHHHHHH--HHHHHHh---cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc--C--------CC
Confidence 443222 677888888 5555554 5899999999999999999887776554432 1 26
Q ss_pred eEEEEeCCcCccChhhhhcceEE
Q psy12735 174 QLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 174 ~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+++.+||+..+. . ..|+.++
T Consensus 147 tii~~sh~~~~~~-~-~d~~~~l 167 (171)
T cd03228 147 TVIVIAHRLSTIR-D-ADRIIVL 167 (171)
T ss_pred EEEEEecCHHHHH-h-CCEEEEE
Confidence 7888889888763 3 4454443
No 30
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-17 Score=131.39 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=94.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....++++.
T Consensus 15 ~l~~~~~~i~~Ge---------------~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 15 ALDDISLTVEKGE---------------IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred eeeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4566666665554 5999999999999999999999988888887765433221 1223355555
Q ss_pred CCCCc-----------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCc
Q psy12735 104 PETRD-----------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 104 ~~~~~-----------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~ 172 (233)
|.... .++|..+++ .++++.. .+|+++++|||++++|......+++..+.+... |
T Consensus 80 q~~~~~~~~tv~~~~~LS~G~~qrv--~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g-------- 145 (173)
T cd03230 80 EEPSLYENLTVRENLKLSGGMKQRL--ALAQALL---HDPELLILDEPTSGLDPESRREFWELLRELKKE-G-------- 145 (173)
T ss_pred cCCccccCCcHHHHhhcCHHHHHHH--HHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C--------
Confidence 54321 577888887 5555554 589999999999999999988887776654333 3
Q ss_pred ceEEEEeCCcCcc
Q psy12735 173 CQLLFEVGDLQYA 185 (233)
Q Consensus 173 ~~~i~et~dl~~~ 185 (233)
..+++.+||...+
T Consensus 146 ~tiii~th~~~~~ 158 (173)
T cd03230 146 KTILLSSHILEEA 158 (173)
T ss_pred CEEEEECCCHHHH
Confidence 5677777877654
No 31
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=4.9e-18 Score=138.22 Aligned_cols=131 Identities=16% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE 105 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~ 105 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.......+.+|++.|.
T Consensus 15 ~l~~v~~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 15 ILDDLSLDLYAGE---------------IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred eeeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 4566667665554 5999999999999999999999988887776544321100001112222221
Q ss_pred --------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC
Q psy12735 106 --------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141 (233)
Q Consensus 106 --------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~ 141 (233)
...+++|..+++ .++++.. .+|++++||||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llllDEPt 154 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRL--AIAAALL---SGKDLLIFDEPT 154 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHH--HHHHHHH---hCCCEEEEeCCC
Confidence 223455666666 4444333 489999999999
Q ss_pred CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 142 ~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+++|++....+.+..+.+... | ..+++.+||+..+
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~-~--------~tii~~sH~~~~~ 189 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQ-G--------KAVIVITHDYEFL 189 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHH
Confidence 999999988887765544322 3 5788888887765
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.69 E-value=1.6e-17 Score=136.18 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=86.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ..+.+
T Consensus 18 il~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 18 ALDNLNFHITKGE---------------MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence 4556666665555 59999999999999999999999888887766543321110 01122
Q ss_pred ccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+++.|.. ..+++|..+++ .++++.. .+|
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~---~~p 157 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRV--AIARAIV---HKP 157 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---cCC
Confidence 3332221 23444555555 3444333 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++||||++++|+++...+.+..+.+.-. + ..+++.+||+..+
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tii~vsH~~~~~ 201 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRR-G--------TTVLVATHDINLV 201 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHH
Confidence 999999999999999988887765544322 2 5788888887755
No 33
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-17 Score=145.05 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=108.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh----cCCCeEEeeeCCcccccc-----
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV----LGYPARTYTLNPKAVSVI----- 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~----~~~~i~~~~~~~~~~~~~----- 96 (233)
++++++|.+.++.+ ++|+|+||||||||+++|+|++.+ .+|.+.+.+.+....+..
T Consensus 22 ~l~~vsl~i~~Ge~---------------~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~ 86 (326)
T PRK11022 22 AVDRISYSVKQGEV---------------VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86 (326)
T ss_pred EEeeeEEEECCCCE---------------EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence 56777777766555 999999999999999999998863 455554433322111000
Q ss_pred --ccccccc-----------------------------------------------------CCCCcCchhHHHHHHHHH
Q psy12735 97 --ELYGVLN-----------------------------------------------------PETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 97 --~l~g~~~-----------------------------------------------------~~~~~~~~gi~~~~~~~~ 121 (233)
..++++. ...+++|+|+.+++ .+
T Consensus 87 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv--~i 164 (326)
T PRK11022 87 VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV--MI 164 (326)
T ss_pred hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH--HH
Confidence 0011111 12345666777776 44
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
+++.. .+|+++++|||++++|+.....+++..+.+....| ..+++.|||+..+ ..+..|+.++|-+.-
T Consensus 165 ArAL~---~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g--------~til~iTHdl~~~-~~~adri~vm~~G~i 232 (326)
T PRK11022 165 AMAIA---CRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN--------MALVLITHDLALV-AEAAHKIIVMYAGQV 232 (326)
T ss_pred HHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH-HHhCCEEEEEECCEE
Confidence 44443 58999999999999999999998887666543334 7899999999876 334568887775421
Q ss_pred ----------CCcchHHHHHHHhhcc
Q psy12735 202 ----------NLGYQPYWTRWVNLNV 217 (233)
Q Consensus 202 ----------~~~~~~~~~swl~~~~ 217 (233)
.-..++|+...++..|
T Consensus 233 ve~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 233 VETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred EEECCHHHHhhCCCChHHHHHHHhCc
Confidence 1134577777777665
No 34
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.2e-17 Score=135.77 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=87.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccccccccc--
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN-- 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~-- 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+... ....++++.
T Consensus 19 il~~vs~~i~~G~---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~ 81 (220)
T cd03293 19 ALEDISLSVEEGE---------------FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQ 81 (220)
T ss_pred EEeceeEEEeCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecc
Confidence 4566777766555 499999999999999999999988888776654322110 001111111
Q ss_pred ---------------------------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 104 ---------------------------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 104 ---------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
.....+|+|..+++ .++++.. .+|++++||
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~la~al~---~~p~lllLD 156 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV--ALARALA---VDPDVLLLD 156 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEC
Confidence 11234556666666 4444443 489999999
Q ss_pred CCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 139 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
||++++|+.+...+.+..+.+....+ ..+++.+|++..+
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~--------~tiii~sH~~~~~ 195 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETG--------KTVLLVTHDIDEA 195 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcC--------CEEEEEecCHHHH
Confidence 99999999998888776554433223 5788888888755
No 35
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.8e-17 Score=129.20 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=93.7
Q ss_pred HHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC-------------
Q psy12735 24 ETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP------------- 90 (233)
Q Consensus 24 ~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~------------- 90 (233)
+.+++++++.+.+ |+.|+++||||||||||+++++|+.++..|.++.++...
T Consensus 18 ~~~le~vsL~ia~---------------ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 18 RSALEDVSLTIAS---------------GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred hhhhhccceeecC---------------CCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 3466777777655 445999999999999999999999998888776643311
Q ss_pred -cccc----------------------------cccccccc---cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 91 -KAVS----------------------------VIELYGVL---NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 91 -~~~~----------------------------~~~l~g~~---~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
.-+. ...+.|.- .+...+.++|+.+++ .++++.+ -+|+.+++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRv--GiARALa---~eP~~LlLD 157 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRV--GIARALA---VEPQLLLLD 157 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHH--HHHHHhh---cCcceEeec
Confidence 0000 00111211 122235689999999 7777665 699999999
Q ss_pred CCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 139 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
||..++|.-...++-...-.+....| ..+++.|||+..| .+-...+|.+++
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tg--------k~~lliTH~ieEA---lflatrLvvlsp 208 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETG--------KQVLLITHDIEEA---LFLATRLVVLSP 208 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhC--------CeEEEEeccHHHH---HhhhheeEEecC
Confidence 99999988655443222222222233 6777788888765 333344555543
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.68 E-value=1.2e-17 Score=136.60 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=86.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ..+.+
T Consensus 17 il~~is~~i~~G~---------------~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 17 ALHDVSLHIRKGE---------------FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred eecceeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 5666777766555 49999999999999999999999888887766543321110 01112
Q ss_pred ccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+++.|.. ..+|+|..+++ .++++.. .+|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p 156 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRV--AIARAIV---NSP 156 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---CCC
Confidence 2222221 23444555554 3333333 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
++++||||++++|+.+...+.+..+.+.-. + ..+++.+|++..+.
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tii~~tH~~~~~~ 201 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKR-G--------TTVIVATHDLSLVD 201 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHc-C--------CEEEEEeCCHHHHH
Confidence 999999999999999988887765544322 3 57777788876553
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.4e-17 Score=136.30 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=87.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....++++.|
T Consensus 15 il~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 15 ALDDLSLTVEPGEF---------------LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eecceeEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 56677777765554 9999999999999999999999888887766443221100 0011222222
Q ss_pred C-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 105 E-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 105 ~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
. ...+|+|..+++ .++++.. .+|++++|
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~la~al~---~~p~~lll 154 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRV--ALARALA---REPSLLLL 154 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 1 123455555555 4444443 58999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|||++++|+++...+++..+.+...+| ..+++.+||+..+
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~sH~~~~~ 194 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRELG--------ITTIYVTHDQEEA 194 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEecCHHHH
Confidence 999999999998888776555433223 5777778887654
No 38
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.6e-17 Score=131.18 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=93.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-----VIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-----~~~l~g 100 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... .....+
T Consensus 15 ~l~~i~~~i~~G~---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 15 VLNDVSLNIEAGE---------------IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4566666665555 59999999999999999999999988888887665432211 122334
Q ss_pred cccCCCC-------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEE
Q psy12735 101 VLNPETR-------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERI 167 (233)
Q Consensus 101 ~~~~~~~-------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i 167 (233)
++.+... .++.|..+++ .++++.. .+|+++++|||++++|+.+...+.+..+.+....+
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~--~la~al~---~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~--- 151 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRV--ALARALA---MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG--- 151 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHH--HHHHHHH---CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---
Confidence 4433321 1677888888 5555554 58999999999999999998888776554433212
Q ss_pred EccCcceEEEEeCCcCcc
Q psy12735 168 RLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 168 ~~~~~~~~i~et~dl~~~ 185 (233)
..+++.+||+..+
T Consensus 152 -----~tiii~sH~~~~~ 164 (178)
T cd03229 152 -----ITVVLVTHDLDEA 164 (178)
T ss_pred -----CEEEEEeCCHHHH
Confidence 5677777777655
No 39
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.67 E-value=4.4e-17 Score=131.68 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=97.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCeEEeeeCCccccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPARTYTLNPKAVSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i~~~~~~~~~~~~~~l~g~~~ 103 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+ .+..|.+.+.+.+.........++++.
T Consensus 24 ~l~~~~~~i~~Ge~---------------~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 88 (194)
T cd03213 24 LLKNVSGKAKPGEL---------------TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVP 88 (194)
T ss_pred ceecceEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEcc
Confidence 56777777765554 9999999999999999999999 888888877655432211122234333
Q ss_pred CCCC------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCce
Q psy12735 104 PETR------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGE 165 (233)
Q Consensus 104 ~~~~------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~ 165 (233)
+... ..++|..+++ .++++.. .+|+++++|||++++|......+++..+.+... +
T Consensus 89 q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv--~laral~---~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~- 161 (194)
T cd03213 89 QDDILHPTLTVRETLMFAAKLRGLSGGERKRV--SIALELV---SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-G- 161 (194)
T ss_pred CcccCCCCCcHHHHHHHHHHhccCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-C-
Confidence 3221 3566777776 4444443 589999999999999999988877665543221 3
Q ss_pred EEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 166 RIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 166 ~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
..+++.+||+....+.+..|+.++
T Consensus 162 -------~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 162 -------RTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred -------CEEEEEecCchHHHHHhcCEEEEE
Confidence 678888888874444444555444
No 40
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.6e-17 Score=136.55 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=89.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l 98 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...
T Consensus 24 il~~isl~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 88 (233)
T PRK11629 24 VLHNVSFSIGEGEM---------------MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88 (233)
T ss_pred eEEeeEEEEcCCcE---------------EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhcc
Confidence 56677777765554 99999999999999999999998888877765543322111 012
Q ss_pred cccccCCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
++++.|... .+++|..+++ .++++.. .+
T Consensus 89 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl--~la~al~---~~ 163 (233)
T PRK11629 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV--AIARALV---NN 163 (233)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHh---cC
Confidence 344333322 2233333333 2222222 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
|++++||||++++|+.+...+.+..+.+....| ..+++.+||+..+..
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g--------~tvii~sH~~~~~~~ 211 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQG--------TAFLVVTHDLQLAKR 211 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC--------CEEEEEeCCHHHHHh
Confidence 999999999999999998888776555433223 678888899887654
No 41
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.67 E-value=8.4e-17 Score=128.21 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=98.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... ......+++.
T Consensus 17 ~l~~i~~~i~~Ge---------------~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 17 VLKNLSLELKQGE---------------KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred ceEEEEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 4666777766555 5999999999999999999999998888887765432211 1122344444
Q ss_pred CC------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccC
Q psy12735 104 PE------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLA 171 (233)
Q Consensus 104 ~~------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~ 171 (233)
+. ....+.|..+++ .++++.. .+|+++++|||++++|+.....+++..+.+. .+
T Consensus 82 q~~~~~~~tv~~~i~~~LS~G~~qrv--~laral~---~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~------- 147 (178)
T cd03247 82 QRPYLFDTTLRNNLGRRFSGGERQRL--ALARILL---QDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KD------- 147 (178)
T ss_pred cCCeeecccHHHhhcccCCHHHHHHH--HHHHHHh---cCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CC-------
Confidence 43 235677888888 5555554 5899999999999999999887776655432 12
Q ss_pred cceEEEEeCCcCccChhhhhcceEE
Q psy12735 172 HCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 172 ~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
..+++.+||+..+. ...|+.++
T Consensus 148 -~tii~~sh~~~~~~--~~d~~~~l 169 (178)
T cd03247 148 -KTLIWITHHLTGIE--HMDKILFL 169 (178)
T ss_pred -CEEEEEecCHHHHH--hCCEEEEE
Confidence 57888889988773 24555443
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.67 E-value=8.9e-18 Score=144.81 Aligned_cols=131 Identities=13% Similarity=0.163 Sum_probs=86.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.++... .....+|++.
T Consensus 22 ~l~~vsl~i~~Gei---------------~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 22 VVDGLSFHVQRGEC---------------FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEecceEEEeCCcE---------------EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 56677777766555 999999999999999999999999888887765543211 1112234433
Q ss_pred CCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|... .+|.|+.+++ .++++.. .+|++++
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~aL~---~~P~lll 161 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL--TLARALV---NDPDVLV 161 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH--HHHHHHh---CCCCEEE
Confidence 3322 3344555544 3333333 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
||||++++|+.+...+.+..+.+.-. | .++++.+|++..+
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~-g--------~till~sH~l~e~ 201 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLAR-G--------KTILLTTHFMEEA 201 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-C--------CEEEEECCCHHHH
Confidence 99999999999988887766655333 3 3455555555443
No 43
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.6e-17 Score=130.30 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=92.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc----------------------ccccccc--cccccCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----------------------AVSVIEL--YGVLNPET 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~----------------------~~~~~~l--~g~~~~~~ 106 (233)
+|..++++||||+|||||+.+++++.+...|.+.+.+.+.. .++.+++ ||.++-..
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 34449999999999999999999999999999888765541 2333344 23322110
Q ss_pred ----------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 107 ----------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 107 ----------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
.+.++|..+++ -+|...+ |+.++++||||...+|+..-.+++...++
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRA--fIAMVla---QdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRA--FIAMVLA---QDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhh--hhheeee---ccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 14577888888 4555555 78999999999999999998888887777
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
+.-+-| .+++..+||++.||-
T Consensus 181 la~el~--------KtiviVlHDINfAS~ 201 (252)
T COG4604 181 LADELG--------KTIVVVLHDINFASC 201 (252)
T ss_pred HHHHhC--------CeEEEEEecccHHHh
Confidence 665444 688899999999864
No 44
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=6.1e-17 Score=142.22 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=94.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccc--
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL-- 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~-- 102 (233)
++++++|.+.++ +.++|+||||||||||+++|+|+..+..|.+.+.+.+..... .+.-+|++
T Consensus 19 ~l~~vsl~i~~G---------------e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 19 VIKGIDLDVADG---------------EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEeeeeEEEcCC---------------CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 455666666554 459999999999999999999999888887766443221100 00112222
Q ss_pred ---------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 103 ---------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 103 ---------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
+......|+|..+++ .++++.. .+|++++|
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv--alARAL~---~~P~llLL 158 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV--AMGRAIV---REPAVFLF 158 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 222335666777777 5555554 59999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|||++++|......+.+..+.+....| ..+++.|||+..+ .....|+.++
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g--------~tii~vTHd~~ea-~~l~D~i~vl 208 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLK--------TTSLYVTHDQVEA-MTLADRVVVM 208 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH-HHhCCEEEEE
Confidence 999999999998888777665543333 6788888888765 3333444444
No 45
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.67 E-value=1.1e-17 Score=146.01 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--ccccccccccCCC--------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLNPET-------------------- 106 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~~~~-------------------- 106 (233)
+..|+.++|+||||||||||+++|+|.+.+..|.+.+.+.++... .....+|++.|..
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 344555999999999999999999999998888887765443110 0111223332221
Q ss_pred ---------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 107 ---------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 107 ---------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
..+|+|+.+++ .++++.. .+|++++||||++++|+.....+.+..+.+
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv--~lA~aL~---~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL--TLARALI---NDPQLLILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 23444555555 3444333 589999999999999999998888776655
Q ss_pred cccCceEEEccCcceEEEEeCCcCcc
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.-. | ..+++.+|++..+
T Consensus 219 ~~~-g--------~tilisSH~l~e~ 235 (340)
T PRK13536 219 LAR-G--------KTILLTTHFMEEA 235 (340)
T ss_pred HhC-C--------CEEEEECCCHHHH
Confidence 433 3 4566666666644
No 46
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.67 E-value=1.2e-16 Score=131.45 Aligned_cols=141 Identities=19% Similarity=0.157 Sum_probs=90.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------c-cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------I-EL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~-~l 98 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. . ..
T Consensus 20 ~l~~isl~i~~G~---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (221)
T TIGR02211 20 VLKGVSLSIGKGE---------------IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKK 84 (221)
T ss_pred eEeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhc
Confidence 4566677766555 499999999999999999999998888877665433221110 0 12
Q ss_pred cccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
++++.|.. ..+|+|..+++ .++++.. .+
T Consensus 85 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~ 159 (221)
T TIGR02211 85 LGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRV--AIARALV---NQ 159 (221)
T ss_pred EEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---CC
Confidence 23333322 22344444444 3333332 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++||||++++|.++...+.+..+.+....+ ..+++.+||+..+.- ..|+.++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~tH~~~~~~~--~d~v~~l 214 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELN--------TSFLVVTHDLELAKK--LDRVLEM 214 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHhh--cCEEEEE
Confidence 999999999999999998888776555433323 578888888876532 3554443
No 47
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.67 E-value=6.2e-17 Score=146.18 Aligned_cols=154 Identities=23% Similarity=0.258 Sum_probs=110.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC---------------------------Cc---------cc
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN---------------------------PK---------AV 93 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~---------------------------~~---------~~ 93 (233)
..|+.++|||+|||||||+.++|+|+..+.+|.+.+.+.+ |. .+
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 4455699999999999999999999998887776654422 10 00
Q ss_pred -------------cccccc---c----cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 94 -------------SVIELY---G----VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 94 -------------~~~~l~---g----~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
...+++ | +.+..++++|+|..+++ .+|++++ .+|+++++|||++++|+....+++
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv--aIARALa---~~P~lli~DEp~SaLDvsvqa~Vl 469 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV--AIARALA---LEPKLLILDEPVSALDVSVQAQVL 469 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH--HHHHHHh---cCCCEEEecCCccccCHHHHHHHH
Confidence 000111 1 23344678999999999 7777776 699999999999999999999998
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC----------CCcchHHHHHHHhhcc
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI----------NLGYQPYWTRWVNLNV 217 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~----------~~~~~~~~~swl~~~~ 217 (233)
+..+.+...-| ++++|.+||+..+.- +-.|..++|-+.- ...-++|+...+...|
T Consensus 470 nLl~~lq~e~g--------~t~lfISHDl~vV~~-i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 470 NLLKDLQEELG--------LTYLFISHDLAVVRY-IADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred HHHHHHHHHhC--------CEEEEEeCCHHHHHh-hCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 87776665545 788888888876533 3357777776632 1234677777777665
No 48
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.67 E-value=1.5e-16 Score=122.68 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=88.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
.+|+.++|+||||||||||+++|+|.+++..|.+.+.+. ..++++.+ ++.|..+++ .++++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~~----lS~G~~~rv--~laral~--- 86 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQ----LSGGEKMRL--ALAKLLL--- 86 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------EEEEEEcc----CCHHHHHHH--HHHHHHh---
Confidence 344559999999999999999999999988888876542 23455544 889999999 5665554
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|+++++|||++++|......+.+..+.+ ...+++.+|++..+ +.+..|+.++
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~------------~~til~~th~~~~~-~~~~d~v~~l 140 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY------------PGTVILVSHDRYFL-DQVATKIIEL 140 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc------------CCEEEEEECCHHHH-HHhCCEEEEE
Confidence 589999999999999999988877655433 14788888888766 3333455443
No 49
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=4.1e-17 Score=135.51 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=87.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....+
T Consensus 15 ~l~~vs~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 15 VLKGVDLDVRRGE---------------ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4566667665555 59999999999999999999999888887766543321110 11123
Q ss_pred ccccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 100 GVLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 100 g~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+++.|.. ..+|+|..+++ .++++.. .+
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~ia~al~---~~ 154 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRV--ALARALA---LD 154 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh---cC
Confidence 3333322 23344444444 3333333 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|++++||||++++|+.+...+++..+.+....| ..+++.+||+..+
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tvi~vsH~~~~~ 200 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELG--------LTSIMVTHDLDTA 200 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEecCHHHH
Confidence 999999999999999998888776555433223 5778888888765
No 50
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.67 E-value=1.1e-16 Score=139.30 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=108.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~~l~ 99 (233)
++++++|.+.++. .++|+|+||||||||+++|+|++.+.+|.+.+.+.+....+. ..-+
T Consensus 36 ~l~~vsl~i~~Ge---------------~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i 100 (331)
T PRK15079 36 AVDGVTLRLYEGE---------------TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100 (331)
T ss_pred EEeeEEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCce
Confidence 5667777765555 599999999999999999999998877777654433211100 0112
Q ss_pred ccccC----------------------------------------------------CCCcCchhHHHHHHHHHhcCCCC
Q psy12735 100 GVLNP----------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 100 g~~~~----------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~ 127 (233)
+++.| .++++|+|+.+++ .++++..
T Consensus 101 ~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv--~iArAL~- 177 (331)
T PRK15079 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI--GIARALI- 177 (331)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH--HHHHHHh-
Confidence 22222 1234555666666 4444333
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC------
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI------ 201 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~------ 201 (233)
.+|+++++|||++++|+.....+++..+.+....+ +.+++.|||+..+.- +..|+.++|-+.-
T Consensus 178 --~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~--------~til~iTHdl~~~~~-~~dri~vl~~G~ive~g~~ 246 (331)
T PRK15079 178 --LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG--------LSLIFIAHDLAVVKH-ISDRVLVMYLGHAVELGTY 246 (331)
T ss_pred --cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHH-hCCEEEEEECCEEEEEcCH
Confidence 58999999999999999999888877665543333 788999999987743 3356766664321
Q ss_pred -C-C--cchHHHHHHHhhcc
Q psy12735 202 -N-L--GYQPYWTRWVNLNV 217 (233)
Q Consensus 202 -~-~--~~~~~~~swl~~~~ 217 (233)
+ + ..++|+..++...|
T Consensus 247 ~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 247 DEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred HHHHcCCCCHHHHHHHhhCC
Confidence 1 1 34678888887665
No 51
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.1e-16 Score=139.08 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=108.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~~l~ 99 (233)
++++++|.+.++. .++|+|+||||||||+++|+|++.+..|.+.+.+.+....+. ..-+
T Consensus 30 ~l~~vsl~i~~Ge---------------~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i 94 (327)
T PRK11308 30 ALDGVSFTLERGK---------------TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI 94 (327)
T ss_pred EEeeeEEEECCCC---------------EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCE
Confidence 5667777776555 599999999999999999999988777766554322111000 0011
Q ss_pred ccc---------------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCC
Q psy12735 100 GVL---------------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 100 g~~---------------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
+++ +...+++|+|+.+++ .++++..
T Consensus 95 ~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv--~iArAL~-- 170 (327)
T PRK11308 95 QIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI--AIARALM-- 170 (327)
T ss_pred EEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH--HHHHHHH--
Confidence 111 222345666777777 4444443
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC-------
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI------- 201 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~------- 201 (233)
.+|+++++|||++++|......+++....+....| ..+++.|||+..+.- +..|+.++|-+.-
T Consensus 171 -~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g--------~til~iTHdl~~~~~-~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 171 -LDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG--------LSYVFISHDLSVVEH-IADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred -cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHH-hCCEEEEEECCEEEEECCHH
Confidence 58999999999999999999888887665543333 788999999887643 3456666664421
Q ss_pred -CC--cchHHHHHHHhhcc
Q psy12735 202 -NL--GYQPYWTRWVNLNV 217 (233)
Q Consensus 202 -~~--~~~~~~~swl~~~~ 217 (233)
.+ ..++|+...+...|
T Consensus 241 ~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 241 QIFNNPRHPYTQALLSATP 259 (327)
T ss_pred HHhcCCCCHHHHHHHHhCC
Confidence 11 34678888887665
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.66 E-value=2.9e-17 Score=136.04 Aligned_cols=146 Identities=15% Similarity=0.157 Sum_probs=91.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+. ...+++
T Consensus 15 ~l~~vs~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 15 VVNGVSLSVKQGEI---------------VGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred eeccceeEecCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 45666777665554 99999999999999999999998888877665433211110 111333
Q ss_pred ccCCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 102 LNPETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 102 ~~~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
+.|... .+++|..+++ .++++.. .+|++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~l 154 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV--EIARALA---TNPKF 154 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---cCCCE
Confidence 333221 2333444443 2333222 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
++||||++++|.++...+.+..+.+.. .+ ..+++.+||+..+.. ...|+ +.+++..+
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~-~~--------~tii~~sH~~~~~~~-~~d~i--~~l~~G~i 211 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD-RG--------IGVLITDHNVRETLS-ITDRA--YIIYEGKV 211 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH-CC--------CEEEEEeCCHHHHHH-hCCEE--EEEECCeE
Confidence 999999999999998888776554432 23 578888888875533 23344 44444333
No 53
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.66 E-value=1.3e-17 Score=143.69 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=83.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+..|.+.+.+.+.... .....+|++.
T Consensus 8 ~l~~vs~~i~~Ge~---------------~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 72 (302)
T TIGR01188 8 AVDGVNFKVREGEV---------------FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72 (302)
T ss_pred EEeeeeEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEec
Confidence 45667777665554 999999999999999999999988888877655432110 0111233333
Q ss_pred CCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|.. ..+|+|+.+++ .++++.. .+|++++
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~lll 147 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRL--DIAASLI---HQPDVLF 147 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 221 23444555555 3333333 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
||||++++|+.....+.+..+.+...+..++.++|++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 9999999999998887776555443334444444443
No 54
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.8e-17 Score=139.20 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=94.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....+|++
T Consensus 22 ~l~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (279)
T PRK13650 22 TLNDVSFHVKQGEW---------------LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMV 86 (279)
T ss_pred eeeeeEEEEeCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence 56777777766555 9999999999999999999999888887766554321111 11122333
Q ss_pred cCC------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPE------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|. ...+++|..+++ .++++.. .+|++
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv--~lAral~---~~p~l 161 (279)
T PRK13650 87 FQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRV--AIAGAVA---MRPKI 161 (279)
T ss_pred EcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 222 123344555544 3333333 58999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++|||++++|+.....+++..+.+....| .++++.+||+..+. ...|+.++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tilivtH~~~~~~--~~dri~~l 213 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQ--------MTVISITHDLDEVA--LSDRVLVM 213 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCHHHHH--hCCEEEEE
Confidence 999999999999999888876665543323 67888888887763 34555444
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=7.2e-17 Score=133.82 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=91.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....+
T Consensus 20 il~~~s~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (233)
T cd03258 20 ALKDVSLSVPKGE---------------IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRI 84 (233)
T ss_pred eeecceEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 4566677765555 59999999999999999999999988888876554322110 01223
Q ss_pred ccccCCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+++.|... .+++|..+++ .++++.. .+|
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p 159 (233)
T cd03258 85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV--GIARALA---NNP 159 (233)
T ss_pred EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH--HHHHHHh---cCC
Confidence 33333322 2333444443 2333222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++++||||++++|+.+...+.+..+.+....| ..+++.+||+..+.. +..|+.++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tvii~sH~~~~~~~-~~d~i~~l 214 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELG--------LTIVLITHEMEVVKR-ICDRVAVM 214 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 99999999999999998888776554433323 678888888876533 33444333
No 56
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.66 E-value=8.4e-17 Score=141.20 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=88.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccc---------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL--------------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~--------------------------- 102 (233)
.|+.++|+||||||||||+++|+|+..+..|.+.+.+.+..... ..+-+|++
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 44559999999999999999999999888887766442211000 00112222
Q ss_pred --------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 103 --------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 103 --------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
+.....+|+|..+++ .++++.. .+|++++||||++++|......+.+..+.+...
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv--aLARaL~---~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV--ALARALA---TSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 222345666777776 5555544 589999999999999999988887776655433
Q ss_pred CceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+ .++++.|||+..+ .++..|+.++.
T Consensus 184 ~~--------~tvi~vTHd~~ea-~~l~d~i~vl~ 209 (353)
T TIGR03265 184 LG--------VTTIMVTHDQEEA-LSMADRIVVMN 209 (353)
T ss_pred cC--------CEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 33 6788888888765 23334554443
No 57
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=5.6e-18 Score=138.11 Aligned_cols=135 Identities=14% Similarity=0.201 Sum_probs=92.5
Q ss_pred HHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc--------
Q psy12735 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL-------- 98 (233)
Q Consensus 27 ~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l-------- 98 (233)
+.+++|++.++.+ ++|+|||||||||++|++.|++++++|.+.+.+.+....+..+.
T Consensus 20 l~~Vsl~v~~Gei---------------~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 20 VNDVSLEVRPGEI---------------VGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred EeceeEEEcCCeE---------------EEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceee
Confidence 4567777766665 99999999999999999999999999888765543321111110
Q ss_pred ----------------------------------------------------ccc---ccCCCCcCchhHHHHHHHHHhc
Q psy12735 99 ----------------------------------------------------YGV---LNPETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 99 ----------------------------------------------------~g~---~~~~~~~~~~gi~~~~~~~~~~ 123 (233)
+|. .+......+.|...++ ++++
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L--EIAr 162 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL--EIAR 162 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH--HHHH
Confidence 000 0111123344544444 5555
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc-CceEEEccCcceEEEEeCC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEVGD 181 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~-~g~~i~~~~~~~~i~et~d 181 (233)
+.+ .+|++++||||.+++.++-...+.+..+.+.-. +..++.+.|+|.+++.++|
T Consensus 163 ALa---~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~d 218 (250)
T COG0411 163 ALA---TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLAD 218 (250)
T ss_pred HHh---cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhcc
Confidence 554 699999999999999888777777766666553 4577788899998887665
No 58
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=8.7e-17 Score=140.93 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=88.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-ccccccc---------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-IELYGVL--------------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-~~l~g~~--------------------------- 102 (233)
.|+.++|+||||||||||+++|+|+..+..|.+.+.+.+...... .+-+|++
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 344599999999999999999999999888877654322110000 0111111
Q ss_pred --------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 103 --------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 103 --------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
+..+...|+|..+++ .++++.. .+|++++||||++++|......+.+..+.+...
T Consensus 111 ~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRV--aLARaL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 111 EERKQRVKEALELVDLAGFEDRYVDQISGGQQQRV--ALARALI---LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 222345666777777 5555554 589999999999999999988887766655433
Q ss_pred CceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.| .++++.|||...+ .++..|+.++.
T Consensus 186 ~g--------~tii~vTHd~~e~-~~laD~i~vm~ 211 (351)
T PRK11432 186 FN--------ITSLYVTHDQSEA-FAVSDTVIVMN 211 (351)
T ss_pred cC--------CEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 23 6777778887764 23334554443
No 59
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.66 E-value=2.4e-17 Score=142.04 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=77.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .....+|++.
T Consensus 19 ~l~~vsl~i~~Ge---------------~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 19 VVNDLSFTIARGE---------------CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEcceeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4666777766555 4999999999999999999999988888776654322100 0011122222
Q ss_pred CC-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PE-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|. ...+|+|+.+++ .++++.. .+|++++
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~lll 158 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL--TLARALI---NDPQLLI 158 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 22 123445555555 4444333 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhcccccc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILT 160 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~ 160 (233)
||||++++|+.....+.+..+.+.
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999888877665543
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.8e-17 Score=139.11 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-----SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-----~~~~l~g 100 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....+|
T Consensus 22 ~l~~vs~~i~~Ge~---------------~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig 86 (287)
T PRK13637 22 ALDNVNIEIEDGEF---------------VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86 (287)
T ss_pred eeeeeEEEEcCCCE---------------EEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceE
Confidence 67778888766665 999999999999999999999988888776654332211 0112233
Q ss_pred cccCCC--------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 101 VLNPET--------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 101 ~~~~~~--------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
++.|.+ ..+++|+.+++ .++++.. .
T Consensus 87 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv--~iAraL~---~ 161 (287)
T PRK13637 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRV--AIAGVVA---M 161 (287)
T ss_pred EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHH--HHHHHHH---c
Confidence 333321 23344444444 3333332 4
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+|+++++|||++++|+.....+++..+.+....| .++++.|||+..+.. +..|+.++
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g--------~tvi~vtHd~~~~~~-~~drv~~l 218 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYN--------MTIILVSHSMEDVAK-LADRIIVM 218 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 8999999999999999999888876665543323 678888888876543 33455554
No 61
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.66 E-value=5e-17 Score=129.75 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=93.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---cccc---
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELY--- 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~--- 99 (233)
+++++++.+.+ |+.++|+||||||||||+++++|.+.+..|.+.+.+.+...... ...+
T Consensus 14 ~l~~~~~~i~~---------------G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 14 VLDDLSLSIEA---------------GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred eEeeeEEEECC---------------CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 45566666655 44599999999999999999999999999998876654322111 1111
Q ss_pred -------c---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEc
Q psy12735 100 -------G---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL 169 (233)
Q Consensus 100 -------g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~ 169 (233)
| ..+......+.|..+++ .++++.. .+|+++++|||++++|.++...+.+....+....+
T Consensus 79 ~q~l~~~gl~~~~~~~~~~LS~G~~qrl--~laral~---~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----- 148 (180)
T cd03214 79 PQALELLGLAHLADRPFNELSGGERQRV--LLARALA---QEPPILLLDEPTSHLDIAHQIELLELLRRLARERG----- 148 (180)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC-----
Confidence 2 12333467899999999 6665554 58999999999999999998877765544322212
Q ss_pred cCcceEEEEeCCcCcc
Q psy12735 170 LAHCQLLFEVGDLQYA 185 (233)
Q Consensus 170 ~~~~~~i~et~dl~~~ 185 (233)
..+++.+|++..+
T Consensus 149 ---~tiii~sh~~~~~ 161 (180)
T cd03214 149 ---KTVVMVLHDLNLA 161 (180)
T ss_pred ---CEEEEEeCCHHHH
Confidence 5777778887755
No 62
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=8e-17 Score=136.50 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=80.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccccccccCCC----------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IELYGVLNPET---------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l~g~~~~~~---------------- 106 (233)
..|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+...... ...++++.|..
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 127 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence 4455699999999999999999999998888877665433211100 11223333322
Q ss_pred -------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 107 -------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 107 -------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
...++|..+++ .++++.. .+|++++||||++++|+.....+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~lAral~---~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV--GLARALA---VDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 23344444444 3333332 48999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+....| ..+++.+||+..+
T Consensus 203 l~~~~~~~g--------~tiii~tH~~~~~ 224 (269)
T cd03294 203 LLRLQAELQ--------KTIVFITHDLDEA 224 (269)
T ss_pred HHHHHHhcC--------CEEEEEeCCHHHH
Confidence 555433323 5788888887765
No 63
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.65 E-value=1.4e-16 Score=138.75 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=107.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeCCcccccc------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLNPKAVSVI------ 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~~~~~~~~------ 96 (233)
++++++|.+.++ +.++|+|+||||||||+++|+|.+.+. +|.+.+.+.+....+..
T Consensus 31 ~l~~vsl~i~~G---------------e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r 95 (330)
T PRK09473 31 AVNDLNFSLRAG---------------ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLR 95 (330)
T ss_pred EEeeeEEEEcCC---------------CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHh
Confidence 456666666554 459999999999999999999998764 56554433221110000
Q ss_pred -ccccccc-----------------------------------------------------CCCCcCchhHHHHHHHHHh
Q psy12735 97 -ELYGVLN-----------------------------------------------------PETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 97 -~l~g~~~-----------------------------------------------------~~~~~~~~gi~~~~~~~~~ 122 (233)
..++++. ..++++|+|+.+++ .++
T Consensus 96 ~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv--~IA 173 (330)
T PRK09473 96 AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV--MIA 173 (330)
T ss_pred cCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH--HHH
Confidence 0011111 12345677777777 444
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC-
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI- 201 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~- 201 (233)
++.. .+|+++++|||++++|+.....+++..+.+....| ..+++.+||+..+.- +..|+.++|-+.-
T Consensus 174 rAL~---~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g--------~til~iTHdl~~~~~-~~Dri~vm~~G~iv 241 (330)
T PRK09473 174 MALL---CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN--------TAIIMITHDLGVVAG-ICDKVLVMYAGRTM 241 (330)
T ss_pred HHHH---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEECCHHHHHH-hCCEEEEEECCEEE
Confidence 4443 58999999999999999999988876655543333 789999999987643 4567777765421
Q ss_pred ---------CCcchHHHHHHHhhcc
Q psy12735 202 ---------NLGYQPYWTRWVNLNV 217 (233)
Q Consensus 202 ---------~~~~~~~~~swl~~~~ 217 (233)
.-..++|+...+...|
T Consensus 242 e~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EECCHHHHHhCCCCHHHHHHHHhCC
Confidence 1135678888887655
No 64
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.65 E-value=6.6e-17 Score=130.03 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=83.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-----cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-----VSVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~-----~~~~~l~g 100 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+... ......++
T Consensus 7 il~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 71 (190)
T TIGR01166 7 VLKGLNFAAERGEV---------------LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71 (190)
T ss_pred eecceeEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE
Confidence 56677777766554 99999999999999999999998888877665433210 00111233
Q ss_pred cccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.|.. ..+++|..+++ .++++.. .+|
T Consensus 72 ~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p 146 (190)
T TIGR01166 72 LVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRV--AIAGAVA---MRP 146 (190)
T ss_pred EEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHH--HHHHHHh---cCC
Confidence 333322 12233333333 2222222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
+++++|||++++|+.....+.+....+... | ..+++.+||+..
T Consensus 147 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~--------~tili~sH~~~~ 189 (190)
T TIGR01166 147 DVLLLDEPTAGLDPAGREQMLAILRRLRAE-G--------MTVVISTHDVDL 189 (190)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHc-C--------CEEEEEeecccc
Confidence 999999999999999988887765554322 2 466666676653
No 65
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=5.9e-17 Score=132.27 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=78.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC-------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP------------------------- 104 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~------------------------- 104 (233)
.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+... .....++++.|
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK 102 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCCh
Confidence 3445599999999999999999999988887777654322100 00011111111
Q ss_pred ----------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 105 ----------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 105 ----------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
.....++|..+++ .++++.. .+|+++++|||++++|+.+...+++..+.+.-.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRVEELSKGNQQKV--QFIAAVI---HDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 1224555666665 4444333 589999999999999999988887765543322
Q ss_pred CceEEEccCcceEEEEeCCcCcc
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+ ..+++.+||+..+
T Consensus 178 -~--------~tii~~sH~~~~~ 191 (210)
T cd03269 178 -G--------KTVILSTHQMELV 191 (210)
T ss_pred -C--------CEEEEECCCHHHH
Confidence 2 5677777877654
No 66
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=2.7e-17 Score=134.32 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=87.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ..+.++++
T Consensus 16 il~~vs~~i~~G~~---------------~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 16 ALDDISLTIKKGEF---------------VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred eecceEEEEcCCcE---------------EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46667777665554 9999999999999999999999888887766443221100 01112222
Q ss_pred cCC------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPE------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|. ...+++|..+++ .++++.. .+|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~---~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRV--AIAGVLA---MDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHh---cCCCE
Confidence 222 223445555555 3333333 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++||||++++|++....+++..+.+.-. | ..+++.+||+..+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~-~--------~tvi~~sH~~~~~ 197 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-G--------KTIIIVTHDLDLL 197 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHc-C--------CEEEEEeCCHHHH
Confidence 9999999999999988887765544322 3 5788888887755
No 67
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=8.7e-17 Score=136.64 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=94.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....+|+
T Consensus 17 ~l~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 17 ALENINLVIKKGEY---------------IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred eeeeeEEEEeCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 56777887766555 9999999999999999999999888888776654332111 1112333
Q ss_pred ccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 102 LNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 102 ~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+.|.+ ..+++|+.+++ .++++.. .+|+
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ 156 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCV--ALAGILT---MEPE 156 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHH--HHHHHHH---cCCC
Confidence 33321 12333444444 3333332 4899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
+++||||++++|+.+...+++..+.+.- .| ..+++.+||+..+ + ...|+.++.
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g--------~til~~tH~~~~~-~-~~d~v~~l~ 209 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHE-KG--------KTIVYITHNLEEL-H-DADRIIVMD 209 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CC--------CEEEEEecCHHHH-h-hCCEEEEEE
Confidence 9999999999999998888776655432 23 6788888888877 4 356666654
No 68
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=6.8e-17 Score=132.44 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=83.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE 105 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~ 105 (233)
+++++++.+.+ |+.++|+||||||||||+++++|.+.+..|.+.+.+.+.........++++.+.
T Consensus 26 il~~vs~~i~~---------------Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 26 VFGPLDFHVDA---------------GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred eeecceEEECC---------------CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 45666666655 455999999999999999999999988888776654322110111112222222
Q ss_pred C--------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC
Q psy12735 106 T--------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141 (233)
Q Consensus 106 ~--------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~ 141 (233)
. ..++.|..+++ .+++... .+|+++++|||+
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llllDEPt 165 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRL--ALARLWL---SPAPLWLLDEPY 165 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCc
Confidence 1 12334444444 3333332 489999999999
Q ss_pred CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 142 ~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+++|.+....+.+..+.+...+ ..+++.+||+..+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~---------~tiii~sH~~~~~~ 201 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGG---------GAALVTTHGAYAAP 201 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCC---------CEEEEEecChhhhh
Confidence 9999999887766554443222 45666667666553
No 69
>KOG0057|consensus
Probab=99.65 E-value=1.6e-16 Score=141.91 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=103.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+.+|+.|+|+|+|||||||++|+|.+++. ..|.+.+++++.+.++ .++.+|+++|+...|+++++.|+..
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sa 452 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSA 452 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCc
Confidence 456677899999999999999999999998 7889999999987765 4456899999999999999888843
Q ss_pred ------HH-------------------------hcCCCCCCC----------CceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 120 ------AV-------------------------NKPLDPGSK----------ERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 120 ------~~-------------------------~~~~~~~~~----------~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+. ...++|++| ++.+++|||||+++|.++-..+++....
T Consensus 453 s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 453 SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 00 112223333 8999999999999999998888776443
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
..+ +.++|+..|+++.+--. =-|++++..
T Consensus 533 -~~~---------~rTvI~IvH~l~ll~~~----DkI~~l~nG 561 (591)
T KOG0057|consen 533 -VMS---------GRTVIMIVHRLDLLKDF----DKIIVLDNG 561 (591)
T ss_pred -hcC---------CCeEEEEEecchhHhcC----CEEEEEECC
Confidence 222 35677777777655332 245555544
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.65 E-value=1.1e-16 Score=133.37 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=87.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....+
T Consensus 17 il~~vs~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 17 ALKNINLNINPGEF---------------VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eeecceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 56777777765554 9999999999999999999999888887766543221100 01112
Q ss_pred ccccCC-------------------------------------------------------CCcCchhHHHHHHHHHhcC
Q psy12735 100 GVLNPE-------------------------------------------------------TRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 100 g~~~~~-------------------------------------------------------~~~~~~gi~~~~~~~~~~~ 124 (233)
+++.|. ...+|+|..+++ .++++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~a 159 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV--AIARA 159 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHH
Confidence 222222 123344444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.. .+|+++++|||++++|++....+.+..+.+....| ..+++.+||+..+
T Consensus 160 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tiii~tH~~~~~ 209 (243)
T TIGR02315 160 LA---QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG--------ITVIINLHQVDLA 209 (243)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH
Confidence 33 48999999999999999998888776555433223 5788888888765
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.6e-17 Score=141.49 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=89.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~~l~ 99 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+.+|.+.+.+.+....+. ...+
T Consensus 20 il~~vsl~i~~Gei---------------~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i 84 (343)
T PRK11153 20 ALNNVSLHIPAGEI---------------FGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQI 84 (343)
T ss_pred EEEeeEEEEcCCCE---------------EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCE
Confidence 45667777765554 99999999999999999999998888887766544322110 1123
Q ss_pred ccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
|++.|.. ..+|+|..+++ .++++.. .+|
T Consensus 85 g~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv--~lAraL~---~~p 159 (343)
T PRK11153 85 GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV--AIARALA---SNP 159 (343)
T ss_pred EEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHH---cCC
Confidence 3333322 23444555555 3333333 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++||||++++|+.+...+++..+.+....| ..+++.+||+..+
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g--------~tiilvtH~~~~i 204 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELG--------LTIVLITHEMDVV 204 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH
Confidence 99999999999999999888877665543323 5677777777654
No 72
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=7.2e-17 Score=135.86 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=104.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc------------------------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK------------------------------------ 91 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~------------------------------------ 91 (233)
.+..|+..+|.|-||||||||+++++++..++.|++.+.+.++.
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 34455559999999999999999999999999888766443321
Q ss_pred ------------------ccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 92 ------------------AVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 92 ------------------~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
.+..-.+-++-++.+++.++|+.+++ .+|++.+ .+|+++++|||.+++|+--...+-
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRV--GLARAla---~~~~IlLMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRV--GLARALA---NDPDILLMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHH--HHHHHHc---cCCCEEEecCchhhcChHHHHHHH
Confidence 11111222344555678899999999 7777776 699999999999999997665555
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE------EECC-CCC---cchHHHHHHHhhc
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV------YVDP-INL---GYQPYWTRWVNLN 216 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v------~~~~-~~~---~~~~~~~swl~~~ 216 (233)
|+...+.- ..+.+++|.+|||+.|-- .-+|.+++ .++. +.+ ....||..+....
T Consensus 205 deLl~Lq~--------~l~KTIvFitHDLdEAlr-iG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v 268 (386)
T COG4175 205 DELLELQA--------KLKKTIVFITHDLDEALR-IGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268 (386)
T ss_pred HHHHHHHH--------HhCCeEEEEecCHHHHHh-ccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhcC
Confidence 54333221 234799999999998733 22344332 2221 111 3456777777654
No 73
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.65 E-value=1.3e-16 Score=127.65 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=85.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----cccccccccCCC----C--------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPET----R-------------- 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~~~~~~----~-------------- 107 (233)
..|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++.|.. .
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~ 103 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS 103 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh
Confidence 345559999999999999999999999999998887765433221 122344444331 0
Q ss_pred cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 108 DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 108 ~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.++.|..+++ .++++.. .+|+++++|||++++|+++...+.+....+... + ..+++.+|++..+
T Consensus 104 ~LS~G~~qrl--~la~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~--------~tiii~sh~~~~~ 167 (182)
T cd03215 104 LLSGGNQQKV--VLARWLA---RDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-G--------KAVLLISSELDEL 167 (182)
T ss_pred hcCHHHHHHH--HHHHHHc---cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHH
Confidence 1556666666 5555554 589999999999999999988887765544322 2 5777778887644
No 74
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.65 E-value=1e-16 Score=147.89 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=80.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+++|+.++|+||||||||||+|+|.|.+++..|.+.+++.+.+.+ .. +.+++++|++..|++++.+|+.-
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~ 434 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPD 434 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCC
Confidence 34566777999999999999999999999999999998877665544 33 34677777777777766666521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.+||+. -.+|++++||||++++|.++-..+.+
T Consensus 435 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal---l~~~~iliLDE~TSaLD~~te~~I~~ 511 (529)
T TIGR02868 435 ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL---LADAPILLLDEPTEHLDAGTESELLE 511 (529)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH---hcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 222221 13899999999999999999888876
Q ss_pred ccc
Q psy12735 155 DNK 157 (233)
Q Consensus 155 ~~~ 157 (233)
...
T Consensus 512 ~l~ 514 (529)
T TIGR02868 512 DLL 514 (529)
T ss_pred HHH
Confidence 644
No 75
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.65 E-value=3.5e-16 Score=130.05 Aligned_cols=157 Identities=14% Similarity=0.168 Sum_probs=96.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc--ccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS--VIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~--~~~l~g~~~ 103 (233)
+++++++.+.++ +.++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....++++.
T Consensus 16 ~l~~vs~~i~~G---------------e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 16 ALDDVSFTVRPG---------------EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeeEEEEcCC---------------CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 455666666554 459999999999999999999999888887766443221100 001122222
Q ss_pred CCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|.. ..+++|..+++ .++++.. .+|++++
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~laral~---~~p~lll 155 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRV--EIARALL---HRPALLL 155 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 221 23344554544 3333332 4899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHHHHh
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVN 214 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~swl~ 214 (233)
||||++++|+.+...+.+..+.+....| ..+++.+||+..+. . ..|+.+ ++...+.+..-.+.++.
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tiii~sH~~~~~~-~-~d~i~~--l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQG--------LSVLWATHLVDEIE-A-DDRLVV--LHRGRVLADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCC--------CEEEEEecChhhHh-h-CCEEEE--EeCCeEEEeCCHHHHHH
Confidence 9999999999999888776554432223 57888899998874 3 444444 44444433322344444
No 76
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.64 E-value=9.6e-17 Score=131.29 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=85.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....+
T Consensus 16 ~l~~~sl~i~~G~---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 16 ALDGINISISAGE---------------FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4566677765544 59999999999999999999999888887766543321110 11112
Q ss_pred ccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 100 GVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 100 g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+++.|.. ..+++|..+++ .++++.. .+|
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p 155 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV--AIARAIV---NSP 155 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH--HHHHHHH---cCC
Confidence 3332221 22344444444 3333332 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+++++|||++++|++....+.+..+.+... | ..+++.+||+..+.
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~--------~tiiivtH~~~~~~ 200 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKA-G--------TTVVVATHAKELVD 200 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-C--------CEEEEEeCCHHHHH
Confidence 999999999999999988887765544222 3 57777788876553
No 77
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.64 E-value=6.1e-17 Score=132.43 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=86.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....++++.|
T Consensus 15 ~l~~is~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 15 ALDDLNLDIADGE---------------FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred eeeceEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4666777766555 49999999999999999999999888887765443221100 0011222222
Q ss_pred C-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 105 E-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 105 ~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
. ....++|..+++ .+++... .+|+++++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~--~laral~---~~p~llll 154 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRV--ALGRAIV---REPKVFLM 154 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 2 123344544444 3333332 48999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|||++++|+.....+++..+.+....+ ..+++.+||+..+
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tvi~~sH~~~~~ 194 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLG--------TTTIYVTHDQVEA 194 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH
Confidence 999999999998888776655443323 5777878887654
No 78
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.64 E-value=4.7e-17 Score=133.57 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=86.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--ccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--VSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~ 103 (233)
+++++++.+.++.+ ++|+|+||||||||+++|+|.+.+.+|.+.+.+.+... ......++++.
T Consensus 20 il~~~sl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 84 (218)
T cd03266 20 AVDGVSFTVKPGEV---------------TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVS 84 (218)
T ss_pred eecceEEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEec
Confidence 56777777766554 99999999999999999999998888887765433211 00112233333
Q ss_pred CCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|... .+++|..+++ .++++.. .+|++++
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ill 159 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV--AIARALV---HDPPVLL 159 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 3221 2333444443 2333222 4899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+|||++++|+.....+.+....+.- .| ..+|+.+||+..+
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~tii~~tH~~~~~ 199 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRA-LG--------KCILFSTHIMQEV 199 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHH-CC--------CEEEEEeCCHHHH
Confidence 9999999999998887776554432 23 5778888887655
No 79
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.64 E-value=7.1e-17 Score=131.03 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=95.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCccccc----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVSV----IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~~----~~l~ 99 (233)
+++++++.+.++. .++|+|+||||||||+++|+|. +.+..|.+.+.+.+....+. ...+
T Consensus 15 ~l~~is~~i~~Ge---------------~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 15 ILKGVNLTIKKGE---------------VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred eeeccceEECCCc---------------EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4566666665555 5999999999999999999998 46778888876654432211 1113
Q ss_pred ccccCC----------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccC
Q psy12735 100 GVLNPE----------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 163 (233)
Q Consensus 100 g~~~~~----------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~ 163 (233)
+++.+. ....+.|..+++ .++++.. .+|+++++|||++++|..+...+++....+.. .
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv--~laral~---~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~ 153 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRN--EILQLLL---LEPDLAILDEPDSGLDIDALRLVAEVINKLRE-E 153 (200)
T ss_pred EEeecChhhccCccHHHHHhhccccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C
Confidence 333332 135677888888 5555554 58999999999999999998887776554422 1
Q ss_pred ceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 164 GERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 164 g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+ ..+++.+|++..+......|+.++
T Consensus 154 ~--------~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 154 G--------KSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred C--------CEEEEEecCHHHHHHhhCCEEEEE
Confidence 2 578888888875432123454444
No 80
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.64 E-value=6.7e-17 Score=136.09 Aligned_cols=132 Identities=23% Similarity=0.183 Sum_probs=84.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA------------- 92 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~------------- 92 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+...
T Consensus 27 il~~isl~i~~Ge---------------~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 27 VLNQLDLHIPAGQ---------------FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 4566666665554 599999999999999999999998877776543211000
Q ss_pred ----ccccc-------------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 93 ----VSVIE-------------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 93 ----~~~~~-------------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
.+..+ .+|. .+.....+|+|..+++ .++++.. .+|++++||||++++|+
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl--~laraL~---~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRV--ALARALI---HRPGLLLLDEPLGALDA 166 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCCCCCH
Confidence 00000 0111 1122235666777776 4444443 58999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.....+.+....+....+ ..+++.+||+..+
T Consensus 167 ~~~~~l~~~L~~~~~~~~--------~tviivsHd~~~~ 197 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHG--------FTVLLVTHDVSEA 197 (257)
T ss_pred HHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH
Confidence 998888776554433222 4566666666543
No 81
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.6e-17 Score=136.72 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=94.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....+|++
T Consensus 22 ~l~~vsl~i~~Ge---------------~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 22 ALKDVSFSVYEGE---------------WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred ceeeeEEEEcCCC---------------EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 5666777766555 49999999999999999999999988888776554332111 11123333
Q ss_pred cCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|.. ..+++|..+++ .++++.. .+|++
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv--~laral~---~~p~l 161 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV--AIAGVLA---LQPDI 161 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 3321 23344444444 3333332 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
++||||++++|+.+...+++..+.+....| .++++.+||+..+. . ..|+.+++
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~--------~tilivsH~~~~~~-~-~d~i~~l~ 214 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKG--------ITVLSITHDLDEAA-Q-ADRVIVMN 214 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCC--------CEEEEEecCHHHHH-c-CCEEEEEE
Confidence 999999999999998888776655543323 67888888888763 3 56666654
No 82
>KOG0058|consensus
Probab=99.64 E-value=1.4e-16 Score=146.51 Aligned_cols=144 Identities=21% Similarity=0.249 Sum_probs=103.9
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---ccccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGV 101 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~ 101 (233)
+++++++|.++||.+ |+||||||+||||++++|.++|.|.+|.+.+++.+.+.++.. +.+|.
T Consensus 482 ~Vlk~lsfti~pGe~---------------vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~ 546 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEV---------------VALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGL 546 (716)
T ss_pred hhhcCceeeeCCCCE---------------EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeee
Confidence 478888888877776 999999999999999999999999999999988877665533 44777
Q ss_pred ccCCCCcCchhHHHHHHH-------------------------------------------------HHhcCCCCCCCCc
Q psy12735 102 LNPETRDWYDGLLSNIFR-------------------------------------------------AVNKPLDPGSKER 132 (233)
Q Consensus 102 ~~~~~~~~~~gi~~~~~~-------------------------------------------------~~~~~~~~~~~~~ 132 (233)
+.|++-.|+..+.+|+.. ++|++.- .+|
T Consensus 547 V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl---r~P 623 (716)
T KOG0058|consen 547 VGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL---RNP 623 (716)
T ss_pred eeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh---cCC
Confidence 777776666666666522 2222222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
.+++|||.|+++|.|+-..+-+....+ + ++.+++...|-|+.+.-|- -|+.++.
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~-~---------~~rTVlvIAHRLSTV~~Ad----~Ivvi~~ 677 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRL-M---------QGRTVLVIAHRLSTVRHAD----QIVVIDK 677 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHh-h---------cCCeEEEEehhhhHhhhcc----EEEEEcC
Confidence 999999999999999865554432221 1 1256777777777666663 4555554
No 83
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.64 E-value=6.2e-16 Score=121.95 Aligned_cols=125 Identities=20% Similarity=0.141 Sum_probs=87.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee-----CCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL-----NPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~-----~~~~~-----~~ 95 (233)
.++++++.+.++. .++|+||||||||||+++++|.+.+..|.+.+.+. -++.. +.
T Consensus 16 ~l~~i~l~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 16 LLKDLSFEIKPGD---------------RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL 80 (166)
T ss_pred eeecCeEEECCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH
Confidence 4566677765555 59999999999999999999999888887765321 01100 11
Q ss_pred ccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceE
Q psy12735 96 IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL 175 (233)
Q Consensus 96 ~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~ 175 (233)
.+.+.+. ....+++|..+++ .++++.. .+|+++++|||++++|++....+.+..+.+ +..+
T Consensus 81 ~~nl~~~--~~~~LS~G~~~rv--~laral~---~~p~~lllDEPt~~LD~~~~~~l~~~l~~~------------~~ti 141 (166)
T cd03223 81 REQLIYP--WDDVLSGGEQQRL--AFARLLL---HKPKFVFLDEATSALDEESEDRLYQLLKEL------------GITV 141 (166)
T ss_pred HHHhhcc--CCCCCCHHHHHHH--HHHHHHH---cCCCEEEEECCccccCHHHHHHHHHHHHHh------------CCEE
Confidence 1111000 2356788998888 5555554 589999999999999999988776654432 2578
Q ss_pred EEEeCCcCc
Q psy12735 176 LFEVGDLQY 184 (233)
Q Consensus 176 i~et~dl~~ 184 (233)
++.+||+..
T Consensus 142 iivsh~~~~ 150 (166)
T cd03223 142 ISVGHRPSL 150 (166)
T ss_pred EEEeCChhH
Confidence 888898764
No 84
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.64 E-value=4e-17 Score=133.58 Aligned_cols=131 Identities=20% Similarity=0.319 Sum_probs=85.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc-----------c--
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK-----------A-- 92 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~-----------~-- 92 (233)
+++++++.+.+ |+.++|+||||||||||+++|+|.+.+..|.+.+.+.+.. .
T Consensus 14 ~l~~isl~i~~---------------Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 14 VLEDVSFEVKP---------------GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred eeecceeEEcC---------------CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 45666666655 4459999999999999999999998887777665432110 0
Q ss_pred ------cccccc-----------------------------ccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 93 ------VSVIEL-----------------------------YGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 93 ------~~~~~l-----------------------------~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.+..+. +|. .+.....+|+|..+++ .++++.. .+|++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~l 153 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRV--LLARALV---QDPDL 153 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 000000 010 1111234555666666 4444333 58999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++||||++++|++....+.+....+.. .+ ..+++.+||+..+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~tvi~~sH~~~~~ 195 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRR-EG--------MTILVVTHDLGLV 195 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cC--------CEEEEEeCCHHHH
Confidence 999999999999998888776555432 23 5777778887755
No 85
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=7.5e-17 Score=131.76 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc--ccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS--VIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~--~~~l~g~~~ 103 (233)
+++++++.+.++ + ++|+||||||||||+++++|.+.+..|.+.+.+.+..... ....++++.
T Consensus 15 ~l~~vs~~i~~g-~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 15 ALDGVSLTLGPG-M---------------YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEcceeEEEcCC-c---------------EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 567777777766 6 9999999999999999999999888887766543321110 011123332
Q ss_pred CCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|.. ..+++|..+++ .++++.. .+|++++
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~lll 153 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV--GIAQALV---GDPSILI 153 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 222 22344444444 3333333 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
||||++++|+.+...+.+..+.+.. ...+++.+||+..+
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~----------~~tii~vsH~~~~~ 192 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE----------DRIVILSTHIVEDV 192 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC----------CCEEEEEcCCHHHH
Confidence 9999999999998888776554421 14677778887765
No 86
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3e-16 Score=139.46 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=83.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccccccccCCC---------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IELYGVLNPET--------------- 106 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l~g~~~~~~--------------- 106 (233)
+..|+.++|+||||||||||+++|+|++.+..|.+.+.+.+....+. ...+|++.|..
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 34566699999999999999999999999888887765543221110 01233333322
Q ss_pred --------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 107 --------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 107 --------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
..+|+|..+++ .++++.. .+|++++||||++++|+.....+.+
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv--~LArAL~---~~P~iLLLDEPts~LD~~~r~~l~~ 205 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV--GLARALA---INPDILLMDEAFSALDPLIRTEMQD 205 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH--HHHHHHh---cCCCEEEEECCCccCCHHHHHHHHH
Confidence 23444555555 3333333 4899999999999999999888877
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
....+....+ ..+++.+||+..+
T Consensus 206 ~L~~l~~~~g--------~TIIivTHd~~~~ 228 (400)
T PRK10070 206 ELVKLQAKHQ--------RTIVFISHDLDEA 228 (400)
T ss_pred HHHHHHHHCC--------CeEEEEECCHHHH
Confidence 6655433323 5778888888765
No 87
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.64 E-value=2.1e-16 Score=139.54 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=82.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccc--------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL-------------------------- 102 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~-------------------------- 102 (233)
..|+.++|+||||||||||+++|+|+..+..|.+.+.+.+..... ...-+|++
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~ 117 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP 117 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC
Confidence 345559999999999999999999999888777665432211000 00111222
Q ss_pred ---------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 103 ---------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 103 ---------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
+..+...++|..+++ .++++.. .+|++++||||++++|......+.+..+.+..
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRV--aLARaL~---~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRV--AIARAVV---NKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 222335566777776 5555554 58999999999999999998888777665544
Q ss_pred cCceEEEccCcceEEEEeCCcCcc
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..| ..+|+.|||...+
T Consensus 193 ~~g--------~tiI~vTHd~~ea 208 (375)
T PRK09452 193 KLG--------ITFVFVTHDQEEA 208 (375)
T ss_pred hcC--------CEEEEEeCCHHHH
Confidence 323 5666667776654
No 88
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.64 E-value=1.9e-16 Score=131.10 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=85.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...+++
T Consensus 15 ~l~~vs~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 15 ILRGVSLEVPKGE---------------VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EecceeeEECCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4566667665554 599999999999999999999998888887765543221111 112333
Q ss_pred ccCCCC---------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 102 LNPETR---------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 102 ~~~~~~---------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
+.+... ..++|..+++ .+++... .+|++++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~ill 154 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQL--AIARALV---TRPKLLL 154 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 333322 1222333333 2222222 4899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|||++++|+.+...+.+....+....+ ..+++.+|++..+.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~sH~~~~~~ 196 (230)
T TIGR03410 155 LDEPTEGIQPSIIKDIGRVIRRLRAEGG--------MAILLVEQYLDFAR 196 (230)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCC--------cEEEEEeCCHHHHH
Confidence 9999999999998887765544332223 67888888887653
No 89
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-16 Score=136.42 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc----cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV----SVIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~----~~~~l~g~ 101 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....+|+
T Consensus 25 vl~~vs~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~ 89 (280)
T PRK13633 25 ALDDVNLEVKKGEF---------------LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGM 89 (280)
T ss_pred eeeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEE
Confidence 67777777766655 999999999999999999999998888877655433211 01122333
Q ss_pred ccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 102 LNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 102 ~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+.|.. ..+|+|..+++ .+++... .+|+
T Consensus 90 v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ 164 (280)
T PRK13633 90 VFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRV--AIAGILA---MRPE 164 (280)
T ss_pred EecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHH---cCCC
Confidence 33321 12333333333 2232222 4899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++||||++++|+.....+.+..+.+....| ..+++.+||+..+.. ..|+.++
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g--------~tillvtH~~~~~~~--~d~v~~l 217 (280)
T PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYG--------ITIILITHYMEEAVE--ADRIIVM 217 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecChHHHhc--CCEEEEE
Confidence 9999999999999999888776655443323 678888888887743 4555544
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.64 E-value=1.3e-16 Score=131.24 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=84.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...+++
T Consensus 15 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 15 ILFGVSLTVPEGE---------------IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeeeeEEEcCCe---------------EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4566666665555 599999999999999999999998888887765543221111 112333
Q ss_pred ccCCCC----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 102 LNPETR----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 102 ~~~~~~----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
+.|... .+++|..+++ .++++.. .+|+++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ll 154 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQML--AIARALM---SRPKLL 154 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHH--HHHHHHh---cCCCEE
Confidence 333221 1222333333 2222222 489999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++|||++++|.+....+++..+.+.. .+ ..+++.+||+..+
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~tiii~sH~~~~~ 195 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRD-EG--------VTILLVEQNARFA 195 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHH-CC--------CEEEEEeCCHHHH
Confidence 99999999999998888776554432 22 5778888887654
No 91
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.64 E-value=2.2e-16 Score=138.92 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=93.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcC--CCeEEeeeCCcccc-cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG--YPARTYTLNPKAVS-VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~--~~i~~~~~~~~~~~-~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|+..+.. |.+.+.+.+..... ...-+|++
T Consensus 20 ~l~~vsl~i~~Ge---------------~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 20 VLDDLSLEIEAGE---------------LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEeeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4556666665544 599999999999999999999999888 87766443221100 00112222
Q ss_pred cC-----------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 103 NP-----------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 103 ~~-----------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
.| .....|+|..+++ .++++.. .+|+++
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv--aLARAL~---~~P~ll 159 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI--AIARAIA---IEPDVL 159 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH--HHHHHHh---cCCCEE
Confidence 22 2334566666666 5555444 589999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccC-ceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLAN-GERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~-g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+||||++++|......+.+..+.+.... | ..+++.|||+..+ ..+..|..++
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g--------~til~vTHd~~ea-~~l~dri~vl 212 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPE--------LTILCVTHDQDDA-LTLADKAGIM 212 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCC--------CEEEEEeCCHHHH-HHhCCEEEEE
Confidence 9999999999999888877766554332 3 5777778887765 3334455444
No 92
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.7e-16 Score=131.99 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=82.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee---CCcccccc------------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL---NPKAVSVI------------------------------ 96 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~---~~~~~~~~------------------------------ 96 (233)
++|+.+++.|||||||||++++++|+..+..|.|.+++- +......+
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 456669999999999999999999999998887766443 21110000
Q ss_pred --------------------cccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 97 --------------------ELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 97 --------------------~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
++-+.-+..+.+.++|..+++ ++|++.+ -+|++++||||..++|..-...+-...
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRV--ALARALA---~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRV--ALARALA---VEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHH--HHHHHhh---cCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 111122233456788888888 7777776 699999999999999998776655544
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+.-..| .+.+|.|||...+
T Consensus 181 r~~~~~~~--------~ttvfVTHD~eea 201 (345)
T COG1118 181 RKLHDRLG--------VTTVFVTHDQEEA 201 (345)
T ss_pred HHHHHhhC--------ceEEEEeCCHHHH
Confidence 44332212 4555556665544
No 93
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.64 E-value=5.1e-17 Score=132.85 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=78.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--c---ccccccccccCCC-------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--V---SVIELYGVLNPET------------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~---~~~~l~g~~~~~~------------------- 106 (233)
.|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+... . .....++++.+..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 445599999999999999999999998888877665432210 0 0111223332221
Q ss_pred -----------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 107 -----------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 107 -----------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
..+++|..+++ .++++.. .+|++++||||++++|+++...+.+...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRV--AIARALA---MNPKVMLFDEPTSALDPELVGEVLDVMK 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHH--HHHHHHh---cCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 23344444444 3333332 4899999999999999999877776655
Q ss_pred cccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+.. .| ..+++.+||+..+
T Consensus 180 ~~~~-~~--------~tvi~~sh~~~~~ 198 (213)
T cd03262 180 DLAE-EG--------MTMVVVTHEMGFA 198 (213)
T ss_pred HHHH-cC--------CEEEEEeCCHHHH
Confidence 4432 23 5778888887765
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1e-16 Score=137.03 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=93.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l 98 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....
T Consensus 22 ~l~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (286)
T PRK13646 22 AIHDVNTEFEQGKY---------------YAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86 (286)
T ss_pred ceeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhh
Confidence 57777777766555 999999999999999999999988888877655432110 01122
Q ss_pred cccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCCC
Q psy12735 99 YGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 99 ~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
+|++.|.+ ..+++|..+++ .++++..
T Consensus 87 ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv--~laraL~--- 161 (286)
T PRK13646 87 IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI--AIVSILA--- 161 (286)
T ss_pred eEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHH---
Confidence 34443321 12333333333 2333222
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|++++||||++++|+.....+++..+.+....| .++++.+||+..+... ..|+.++
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tvl~vtH~~~~~~~~-~dri~~l 219 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN--------KTIILVSHDMNEVARY-ADEVIVM 219 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC--------CEEEEEecCHHHHHHh-CCEEEEE
Confidence 48999999999999999999888776665543333 6778888888765432 3455444
No 95
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.7e-16 Score=122.42 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=99.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------------------ 87 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------------------ 87 (233)
-|++++|...|+.+ .+|+|.||||||||++++++-+.+..|.+.+..
T Consensus 21 gc~~vsF~l~PGeV---------------LgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 21 GCRDVSFDLYPGEV---------------LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred CccccceeecCCcE---------------EEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 47888999888877 999999999999999999988777766654421
Q ss_pred ----------eCCcc-----cccc------------cccc------------------cccCCCCcCchhHHHHHHHHHh
Q psy12735 88 ----------LNPKA-----VSVI------------ELYG------------------VLNPETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 88 ----------~~~~~-----~~~~------------~l~g------------------~~~~~~~~~~~gi~~~~~~~~~ 122 (233)
.+|.. ++.. +.|| ..+..+..|++|+.+++ +++
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL--QiA 163 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL--QIA 163 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH--HHH
Confidence 12200 0000 0011 13334568999999999 888
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+... ..|+++++|||+.++|..-...++|..+.+..+-+ ...++.|||+..+.
T Consensus 164 RnLV---t~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~--------la~viVTHDl~Var 216 (258)
T COG4107 164 RNLV---TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG--------LAVVIVTHDLAVAR 216 (258)
T ss_pred HHhc---cCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC--------ceEEEEechhHHHH
Confidence 7665 68999999999999999999999998877765544 67888899998764
No 96
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.9e-17 Score=134.35 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=85.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....++++.
T Consensus 15 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 15 AVRGVSFRVRRGE---------------IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred eeeceeEEECCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4566666665555 4999999999999999999999888877776544321100 0011122222
Q ss_pred CC-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PE-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|. ...+|+|..+++ .++++.. .+|++++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~--~la~al~---~~p~lll 154 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL--EIARSLV---HRPEVLF 154 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 22 123444555555 3333333 5899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+|||++++|+++...+.+....+....+ ..+++.+||+..+
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tvi~~tH~~~~~ 195 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFG--------MTILLTTHYMEEA 195 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH
Confidence 9999999999998888776554433323 5777888887754
No 97
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.64 E-value=1.2e-16 Score=142.16 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=93.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+|+|+|.+.+.+|.+.+.+.+....+. ...+|++
T Consensus 18 vL~~vs~~i~~Ge---------------iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 18 VLDGVDLSVREGS---------------LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEEeeEEEECCCC---------------EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4566667665555 499999999999999999999998888877765533221110 1112222
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.|. ...+|+|..+++ .++++.. ++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv--~IArAL~---~~ 157 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV--LLARALA---QA 157 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHH---cC
Confidence 221 123455666665 4444443 69
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++||||++++|+.....+++..+.+.. .+ ..+++.+||++.+.. ...|+.++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g--------~TIIivsHdl~~~~~-~adrii~l 212 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVD-DG--------KTAVAAIHDLDLAAR-YCDELVLL 212 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC--------CEEEEEECCHHHHHH-hCCEEEEE
Confidence 999999999999999998888877666543 23 577888888877643 23344443
No 98
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.3e-17 Score=137.52 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=93.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-------cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-------VSVIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~-------~~~~~l 98 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|...+..|.+.+.+.+... ......
T Consensus 22 ~L~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (290)
T PRK13634 22 ALYDVNVSIPSGSY---------------VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK 86 (290)
T ss_pred ceeeEEEEEcCCCE---------------EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhh
Confidence 66777787766555 99999999999999999999998888877665543210 001112
Q ss_pred cccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCCC
Q psy12735 99 YGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 99 ~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
+|++.|.+ ..+++|..+++ .++++..
T Consensus 87 ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv--~lAraL~--- 161 (290)
T PRK13634 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV--AIAGVLA--- 161 (290)
T ss_pred EEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH--HHHHHHH---
Confidence 33333321 23334444444 3333332
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+|+++++|||++++|+.....+++..+.+....| .++++.+||+..+.. +..|+.++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g--------~tviiitHd~~~~~~-~~drv~~l~ 220 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG--------LTTVLVTHSMEDAAR-YADQIVVMH 220 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEEE
Confidence 48999999999999999999888877665544333 577777777775533 345555543
No 99
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.63 E-value=1.1e-16 Score=129.88 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=86.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
.++++++.+.++. .++|+|+||||||||+++|+|.+.+..|.+.+.+.+.... ...+.++++.
T Consensus 15 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 15 LFSGLSFTLAAGE---------------ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred eeccceEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4566666665555 5999999999999999999999988887776543221100 0011111111
Q ss_pred C-----------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCC
Q psy12735 104 P-----------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142 (233)
Q Consensus 104 ~-----------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~ 142 (233)
+ ....+++|..+++ .++++.. .+|+++++|||++
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p~llllDEPt~ 154 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV--ALARLLL---SGRPLWILDEPTT 154 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCC
Confidence 1 1224455666666 4444443 5899999999999
Q ss_pred HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 143 ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 143 ~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++|+.....+.+....+... | ..+++.+||......
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~-g--------~tiii~sH~~~~~~~ 190 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCAR-G--------GMVVLTTHQDLGLSE 190 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhC-C--------CEEEEEecCchhhhh
Confidence 99999988887765543322 2 467777777666554
No 100
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.6e-16 Score=129.12 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=78.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh---hcCCCeEEeeeCCccc--ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST---VLGYPARTYTLNPKAV--SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~---~~~~~i~~~~~~~~~~--~~~~l~g 100 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+. +..|.+.+.+.+.... ...+.++
T Consensus 22 il~~~s~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~ 86 (202)
T cd03233 22 ILKDFSGVVKPGEM---------------VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII 86 (202)
T ss_pred eeeeEEEEECCCcE---------------EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEE
Confidence 56677777766555 99999999999999999999988 6788777655433211 1112233
Q ss_pred cccCCC------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 101 VLNPET------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 101 ~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
++.+.. ..++.|..+++ .++++.. .+|+++++|||++++|+++...+++..
T Consensus 87 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl--~laral~---~~p~llllDEPt~~LD~~~~~~~~~~l 161 (202)
T cd03233 87 YVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRV--SIAEALV---SRASVLCWDNSTRGLDSSTALEILKCI 161 (202)
T ss_pred EEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHH--HHHHHHh---hCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 333322 23455555555 3444333 589999999999999999988887765
Q ss_pred cccc
Q psy12735 157 KILT 160 (233)
Q Consensus 157 ~~l~ 160 (233)
+.+.
T Consensus 162 ~~~~ 165 (202)
T cd03233 162 RTMA 165 (202)
T ss_pred HHHH
Confidence 5543
No 101
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.6e-16 Score=132.36 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=86.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-ccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-IELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-~~l~g~~~~ 104 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+...... ...++++.|
T Consensus 17 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 17 ALDDVSLDIPSGE---------------LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred eeeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4566777766555 499999999999999999999998887777654432211000 011222222
Q ss_pred C---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 105 E---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 105 ~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
. ...+++|..+++ .++++.. .+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~ 156 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRV--ALARALA---VEPK 156 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHh---cCCC
Confidence 1 123344444444 3333333 4899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+++||||++++|++....+.+....+....| ..+|+.+||+..+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tvii~sH~~~~~ 200 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELH--------VTTVFVTHDQEEA 200 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH
Confidence 9999999999999998888776555443323 6788888888754
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.63 E-value=5.7e-16 Score=128.02 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccccccccCCC-----------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IELYGVLNPET----------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l~g~~~~~~----------------- 106 (233)
+|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...++++.|..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 455599999999999999999999998888877665433211110 01123322221
Q ss_pred ------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 107 ------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 107 ------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.+...+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl--~la~al~---~~p~llllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 115 LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV--ALARAFN---GRPDVLFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 22344444444 3333332 489999999999999999988887766
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+....| ..+++.+||+..+
T Consensus 190 ~~~~~~~~--------~tii~~sH~~~~~ 210 (228)
T PRK10584 190 FSLNREHG--------TTLILVTHDLQLA 210 (228)
T ss_pred HHHHHhcC--------CEEEEEecCHHHH
Confidence 55433323 5777888887754
No 103
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.63 E-value=1.7e-16 Score=129.35 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-ccccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-~~~~l~g~~~~ 104 (233)
++++++|.+.++. .++|+||||||||||+++++|...+..|.+.+.+.+.... .....++++.+
T Consensus 15 ~l~~~~~~i~~G~---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 15 VLDDISLHVKKGE---------------IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred eEeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 5566677765555 5999999999999999999999888888776654332110 01112233332
Q ss_pred CC-------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC
Q psy12735 105 ET-------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141 (233)
Q Consensus 105 ~~-------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~ 141 (233)
.. ...++|..+++ .++++.. .+|+++++|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~llllDEPt 154 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRL--GIALALL---GNPDLLILDEPT 154 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHH--HHHHHHh---cCCCEEEECCCc
Confidence 21 12334444444 3333332 489999999999
Q ss_pred CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 142 ~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+++|+.+...+++..+.+.. .+ ..+++.+||+..+
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~-~~--------~tii~~tH~~~~~ 189 (208)
T cd03268 155 NGLDPDGIKELRELILSLRD-QG--------ITVLISSHLLSEI 189 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CC--------CEEEEEcCCHHHH
Confidence 99999998887765554332 22 5777778887755
No 104
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.63 E-value=1.9e-16 Score=143.04 Aligned_cols=165 Identities=23% Similarity=0.268 Sum_probs=118.4
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc----CCCeEEeee------------
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTL------------ 88 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~----~~~i~~~~~------------ 88 (233)
.++++++|.+.++.+ ++|+|.|||||||+.+.+.|..... +|.+.+.+.
T Consensus 23 ~~v~~vsf~v~~GE~---------------lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 23 PAVRDVSFEVEPGEI---------------LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred eeeecceEEecCCcE---------------EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 467788888877666 9999999999999999999988755 455543221
Q ss_pred -----------------CC---------------c----------ccccccccccc-----cCCCCcCchhHHHHHHHHH
Q psy12735 89 -----------------NP---------------K----------AVSVIELYGVL-----NPETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 89 -----------------~~---------------~----------~~~~~~l~g~~-----~~~~~~~~~gi~~~~~~~~ 121 (233)
|| . +...-+..|.- +.-++++|+|+.|+++-++
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAm 167 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAM 167 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHH
Confidence 11 0 00011111211 2356789999999995444
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
+ .+ .+|+++++||||+++|+....++++..+.+....| +.+++.|||+..++-. -.|..++|-+.-
T Consensus 168 A--La---~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g--------~a~l~ITHDl~Vva~~-aDrv~Vm~~G~i 233 (539)
T COG1123 168 A--LA---LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG--------MAVLFITHDLGVVAEL-ADRVVVMYKGEI 233 (539)
T ss_pred H--Hh---CCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC--------cEEEEEcCCHHHHHHh-cCeEEEEECCEE
Confidence 4 33 58999999999999999999999999888876666 8999999999877653 467777776642
Q ss_pred C--------C--cchHHHHHHHhhccc
Q psy12735 202 N--------L--GYQPYWTRWVNLNVK 218 (233)
Q Consensus 202 ~--------~--~~~~~~~swl~~~~~ 218 (233)
. + .-+||+...+...|.
T Consensus 234 VE~G~~~~i~~~p~hpYT~~Ll~a~p~ 260 (539)
T COG1123 234 VETGPTEEILSNPQHPYTRGLLAAVPR 260 (539)
T ss_pred EEecCHHHHHhccCCcccHHHHhhCCC
Confidence 1 1 336788888877653
No 105
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.1e-17 Score=139.99 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=90.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA------------- 92 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~------------- 92 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+...
T Consensus 22 ~l~~vsl~i~~Ge~---------------v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 86 (305)
T PRK13651 22 ALDNVSVEINQGEF---------------IAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEK 86 (305)
T ss_pred ceeeeEEEEeCCCE---------------EEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccc
Confidence 56777777766555 99999999999999999999998888887765322100
Q ss_pred --------------cccccccccccCCC-------------------------------------------------CcC
Q psy12735 93 --------------VSVIELYGVLNPET-------------------------------------------------RDW 109 (233)
Q Consensus 93 --------------~~~~~l~g~~~~~~-------------------------------------------------~~~ 109 (233)
......+|++.|.+ ..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 166 (305)
T PRK13651 87 LVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL 166 (305)
T ss_pred cccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 01112244444431 122
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhh
Q psy12735 110 YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPAT 189 (233)
Q Consensus 110 ~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~ 189 (233)
|+|..+++ .++++.. .+|++++||||++++|+.....+++..+.+.. .| .++++.+||+..+.. +
T Consensus 167 SgGqkqrv--alA~aL~---~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g--------~tiiivtHd~~~~~~-~ 231 (305)
T PRK13651 167 SGGQKRRV--ALAGILA---MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QG--------KTIILVTHDLDNVLE-W 231 (305)
T ss_pred CHHHHHHH--HHHHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC--------CEEEEEeeCHHHHHH-h
Confidence 33333333 2222222 48999999999999999998888776655542 23 567777777765542 2
Q ss_pred hhcceEE
Q psy12735 190 VSRAGMV 196 (233)
Q Consensus 190 isr~~~v 196 (233)
..|+.++
T Consensus 232 adrv~vl 238 (305)
T PRK13651 232 TKRTIFF 238 (305)
T ss_pred CCEEEEE
Confidence 3444443
No 106
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.1e-16 Score=133.89 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=90.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 24 ~l~~isl~i~~Ge---------------~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 88 (269)
T PRK13648 24 TLKDVSFNIPKGQ---------------WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIV 88 (269)
T ss_pred ceeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEE
Confidence 4566677765555 49999999999999999999999888887766554321111 11122333
Q ss_pred cCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|.+ ..++.|..+++ .++++.. .+|++
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p~l 163 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV--AIAGVLA---LNPSV 163 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 2221 12333444444 3333322 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++||||++++|+.....+.+..+.+....| ..+++.+|++..+. . ..|+.++
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~--------~tiiivtH~~~~~~-~-~d~i~~l 215 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHN--------ITIISITHDLSEAM-E-ADHVIVM 215 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCchHHh-c-CCEEEEE
Confidence 999999999999998888776555433323 57788888887664 2 4455444
No 107
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.63 E-value=2.6e-16 Score=131.70 Aligned_cols=138 Identities=19% Similarity=0.125 Sum_probs=92.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee-------CCc---cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL-------NPK---AVSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~-------~~~---~~~~ 95 (233)
.+.+.++.+.++. +..|+.++|+||||||||||+++|+|.+.+..|.+.+.+. ++. ..+.
T Consensus 9 ~~~~~~l~~~~~~----------i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGS----------ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCC----------cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 3345555555444 3678889999999999999999999999887776654320 000 0011
Q ss_pred ccc---------------------ccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 96 IEL---------------------YGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 96 ~~l---------------------~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
.+. +|. .+.....+++|..+++ .++++.. .+|++++||||++++|++....
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv--~iaraL~---~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRV--AIAACLS---KDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHH
Confidence 111 111 1223346788888888 6666554 6899999999999999999888
Q ss_pred HhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 152 VMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.+..+.+....+ ..+++.+||+..+.
T Consensus 154 l~~~l~~~~~~~~--------~tiiivsHd~~~~~ 180 (246)
T cd03237 154 ASKVIRRFAENNE--------KTAFVVEHDIIMID 180 (246)
T ss_pred HHHHHHHHHHhcC--------CEEEEEeCCHHHHH
Confidence 8776555443323 57777788877553
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.4e-17 Score=135.06 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=84.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC-
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP- 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~- 104 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... ....|++.|
T Consensus 16 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~v~q~ 78 (255)
T PRK11248 16 ALEDINLTLESGE---------------LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP--GAERGVVFQN 78 (255)
T ss_pred eEeeeeEEECCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC--CCcEEEEeCC
Confidence 4566777766555 4999999999999999999999988888776543221100 000111111
Q ss_pred ----------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 105 ----------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 105 ----------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
....+++|..+++ .++++.. .+|++++||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl--~laral~---~~p~lllLD 153 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV--GIARALA---ANPQLLLLD 153 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEe
Confidence 1223455555555 3333333 489999999
Q ss_pred CCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 139 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
||++++|+.+...+.+..+.+....| ..+++.+||+..+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g--------~tviivsH~~~~~ 192 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETG--------KQVLLITHDIEEA 192 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH
Confidence 99999999998888776555433223 4566666766644
No 109
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.63 E-value=5.2e-17 Score=133.46 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=86.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....++++.
T Consensus 17 il~~is~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 17 AVDDLSLNVYKGEI---------------FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred eecceEEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 56777777766555 999999999999999999999988888776654332110 0011122222
Q ss_pred CCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
|.. ..++.|..+++ .++++.. .+|++++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~lll 156 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL--SLAIALI---GGPSVLL 156 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 221 23344444444 3333333 4899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 137 FDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|||++++|+.+...+++..+.+.. +..+++.+||+..+.
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~----------~~tii~~sH~~~~~~ 196 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK----------GRSIILTTHSMDEAE 196 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc----------CCEEEEEcCCHHHHH
Confidence 9999999999998888776544321 157888888877653
No 110
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.3e-16 Score=131.28 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=90.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....+
T Consensus 16 ~l~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 16 ALKDVSLSINPGEF---------------VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEecceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46667777765554 9999999999999999999999888887766543321111 11122
Q ss_pred ccccCCC-------------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 100 GVLNPET-------------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 100 g~~~~~~-------------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
+++.|.. ..+++|..+++ .++++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~a 158 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV--AIARA 158 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH--HHHHH
Confidence 3332221 12333444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|++++||||++++|+.....+.+..+.+....| ..+++.+||+..+. ....|+.++
T Consensus 159 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~tH~~~~~~-~~~d~v~~l 218 (241)
T cd03256 159 LM---QQPKLILADEPVASLDPASSRQVMDLLKRINREEG--------ITVIVSLHQVDLAR-EYADRIVGL 218 (241)
T ss_pred Hh---cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHH-HhCCEEEEE
Confidence 22 48999999999999999998888776555433323 57888888887653 233444444
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=99.63 E-value=1.9e-16 Score=130.37 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=78.6
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------cccccccccCCC-----------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELYGVLNPET----------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~g~~~~~~----------------- 106 (233)
.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++.|..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI 105 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHH
Confidence 344559999999999999999999999888887766543321110 011223333221
Q ss_pred ------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 107 ------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 107 ------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.+...+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 106 IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV--GIARAVV---NKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 22333444444 3333322 489999999999999999988777655
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
..+... + ..+++.+||+..+.
T Consensus 181 ~~~~~~-~--------~tiii~sH~~~~~~ 201 (222)
T PRK10908 181 EEFNRV-G--------VTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHC-C--------CEEEEEeCCHHHHH
Confidence 544222 2 57777788876553
No 112
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.6e-16 Score=138.91 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=86.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
++++++|.+.++. .++|+||||||||||+++|+|++.+..|.+.+.+.+..... ....+|++.|
T Consensus 18 vl~~vsl~i~~Ge---------------~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 18 ISKDINLDIHEGE---------------FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEeeeEEEEcCCC---------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4556666665544 59999999999999999999999888887765432211000 0011222222
Q ss_pred -----------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 105 -----------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 105 -----------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
....+|+|..+++ .++++.. .+|++++|
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv--aLAraL~---~~P~lLLL 157 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV--AIGRTLV---AEPSVFLL 157 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 2234566666666 5555444 58999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|||++++|......+.+..+.+....| ..+++.|||+..+
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g--------~tvI~vTHd~~~~ 197 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLG--------RTMIYVTHDQVEA 197 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhC--------CEEEEEeCCHHHH
Confidence 999999999998888776655443322 4566666666543
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.63 E-value=4.2e-16 Score=136.76 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=92.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....+|++.|
T Consensus 17 ~l~~isl~i~~Ge---------------~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 17 VLNDISLDIPSGQ---------------MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4556666665554 59999999999999999999999888887766443221100 0011122211
Q ss_pred ---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 105 ---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 105 ---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
....+++|..+++ .++++.. .+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv--alArAL~---~~P~ 156 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV--ALARALA---VEPQ 156 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHh---cCCC
Confidence 1234556666666 4555444 5899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++||||++++|......+.+..+.+....| +.+++.|||+..+.. +..|+.++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g--------~tii~vTHd~~ea~~-~~Dri~vl 210 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELK--------FTSVFVTHDQEEAME-VADRVVVM 210 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 9999999999999998888776665543323 677788888876533 23444433
No 114
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.5e-16 Score=138.32 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=86.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP------------------------ 104 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~------------------------ 104 (233)
..|+.++|+||||||||||+++|+|+..+..|.+.+.+.+..... .++-+|++.|
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~ 122 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC
Confidence 345559999999999999999999999888877765443221100 0111222222
Q ss_pred -----------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 105 -----------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 105 -----------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
.+...++|..+++ .++++.. .+|++++||||++++|......+....+.+..
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV--aLARAL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV--ALARSLA---KRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 2234566666666 4555444 58999999999999999998877765554433
Q ss_pred cCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
..| ..+++.|||+..+. ++..|+.++
T Consensus 198 ~~g--------~tii~vTHd~~ea~-~laDri~vl 223 (377)
T PRK11607 198 RVG--------VTCVMVTHDQEEAM-TMAGRIAIM 223 (377)
T ss_pred hcC--------CEEEEEcCCHHHHH-HhCCEEEEE
Confidence 223 57777778777553 233454444
No 115
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=4.9e-17 Score=138.19 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=91.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....+|++
T Consensus 20 ~l~~isl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 20 ALKGLSLSIPEGSK---------------TALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred eeeeEEEEEcCCCE---------------EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 56777777766555 9999999999999999999999888888776554332111 11123333
Q ss_pred cCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|.+ ..+++|..+++ .++++.. .+|++
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv--~laraL~---~~p~l 159 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV--AIAGVLA---MDPDV 159 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHH--HHHHHHH---cCCCE
Confidence 3321 23334444444 3333332 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++|||++++|+.....+++..+.+... | ..+++.+||+..+.. ...|+.++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g--------~tili~tH~~~~~~~-~~d~i~~l 211 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQ-G--------KTVIVATHDVDLAAE-WADQVIVL 211 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 9999999999999998887766554322 3 577777777776532 23444444
No 116
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=5.2e-16 Score=136.31 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=80.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccccccccCC-----------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIELYGVLNPE----------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l~g~~~~~----------------- 105 (233)
..|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .....+|++.|.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 101 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM 101 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhh
Confidence 45666999999999999999999999988888776544321100 011122333222
Q ss_pred ------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 106 ------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 106 ------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
...+++|..+++ .++++.. .+|++++||||++++|+.....+.+..+.+..
T Consensus 102 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRv--alaraL~---~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 102 AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRV--AIGRALL---TAPELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 234455666665 4444443 58999999999999999998888776665543
Q ss_pred cCceEEEccCcceEEEEeCCcCcc
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..| ..+++.|||+..+
T Consensus 177 ~~g--------~tii~vTHd~~~~ 192 (352)
T PRK11144 177 EIN--------IPILYVSHSLDEI 192 (352)
T ss_pred hcC--------CeEEEEecCHHHH
Confidence 323 4566666666543
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.62 E-value=1.1e-16 Score=132.14 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=85.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.++...+ ....+
T Consensus 20 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (228)
T cd03257 20 ALDDVSFSIKKGE---------------TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI 84 (228)
T ss_pred eecCceeEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE
Confidence 4667777776555 59999999999999999999999888887776554332211 11223
Q ss_pred ccccCCC----------------------------------------------------CcCchhHHHHHHHHHhcCCCC
Q psy12735 100 GVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 100 g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~~~~~ 127 (233)
+++.|.. ..+++|..+++ .++++..
T Consensus 85 ~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~- 161 (228)
T cd03257 85 QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV--AIARALA- 161 (228)
T ss_pred EEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH--HHHHHHh-
Confidence 3333322 11222333333 2222222
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|+++...+.+..+.+....| ..+++.+||+..+
T Consensus 162 --~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~sH~~~~~ 209 (228)
T cd03257 162 --LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG--------LTLLFITHDLGVV 209 (228)
T ss_pred --cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH
Confidence 48999999999999999998888776555433223 5778888887755
No 118
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.62 E-value=2.1e-16 Score=128.60 Aligned_cols=130 Identities=19% Similarity=0.172 Sum_probs=84.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-------VIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-------~~~l 98 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....
T Consensus 13 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 13 ILDDLNLTIEKGK---------------MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred EEeceEEEEeCCc---------------EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4566666665554 59999999999999999999999888887766544311000 0112
Q ss_pred cccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
++++.+.. ..++.|..+++ .++++.. .+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~--~laral~---~~ 152 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRV--ALARAIL---KD 152 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHH--HHHHHHH---cC
Confidence 23322221 23344444444 3333332 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
|+++++|||++++|+.+...+.+..+.+... + ..+++.+|++..
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tii~~sh~~~~ 196 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDE-G--------KTIIIVTHDPEV 196 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHHH
Confidence 9999999999999999988887765554322 2 567777777653
No 119
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.8e-16 Score=138.10 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=103.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh----hcCCCeEEeeeCCcccccc-----
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST----VLGYPARTYTLNPKAVSVI----- 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~----~~~~~i~~~~~~~~~~~~~----- 96 (233)
++++++|.+.++. .++|+|+||||||||+++|+|... +.+|.+.+.+.+....+..
T Consensus 22 ~l~~vsl~i~~Ge---------------~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (330)
T PRK15093 22 AVDRVSMTLTEGE---------------IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred EEeeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence 5666777765555 599999999999999999999875 3455554433221100000
Q ss_pred --ccccccc----------------------------------------------------------CCCCcCchhHHHH
Q psy12735 97 --ELYGVLN----------------------------------------------------------PETRDWYDGLLSN 116 (233)
Q Consensus 97 --~l~g~~~----------------------------------------------------------~~~~~~~~gi~~~ 116 (233)
..++++. ..++++|+|+.++
T Consensus 87 ~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QR 166 (330)
T PRK15093 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQK 166 (330)
T ss_pred hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0011111 1223556666666
Q ss_pred HHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 117 IFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+ .++++.. .+|+++++|||++++|+.....+++..+.+....| ..+++.+||+..+.- ...|+.++
T Consensus 167 v--~iArAL~---~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g--------~tii~itHdl~~v~~-~~dri~vm 232 (330)
T PRK15093 167 V--MIAIALA---NQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN--------TTILLISHDLQMLSQ-WADKINVL 232 (330)
T ss_pred H--HHHHHHH---CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC--------CEEEEEECCHHHHHH-hCCEEEEE
Confidence 6 4444443 58999999999999999999888887665543323 788999999887753 34566666
Q ss_pred EECCC-------C-C--cchHHHHHHHhhcc
Q psy12735 197 YVDPI-------N-L--GYQPYWTRWVNLNV 217 (233)
Q Consensus 197 ~~~~~-------~-~--~~~~~~~swl~~~~ 217 (233)
|-+.- . + ..++|+..+++..|
T Consensus 233 ~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred ECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 54421 1 1 23577777777665
No 120
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.9e-17 Score=139.68 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=87.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV------------ 93 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~------------ 93 (233)
+++++++.+.++. .++|+|+||||||||+++|+|++.+..|.+.+.+.+....
T Consensus 41 ~L~~vsl~i~~Ge---------------~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~ 105 (320)
T PRK13631 41 ALNNISYTFEKNK---------------IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYS 105 (320)
T ss_pred ceeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccc
Confidence 5677777776555 4999999999999999999999998888887765432110
Q ss_pred -------ccccccccccCCC--Cc-----------------------------------------------CchhHHHHH
Q psy12735 94 -------SVIELYGVLNPET--RD-----------------------------------------------WYDGLLSNI 117 (233)
Q Consensus 94 -------~~~~l~g~~~~~~--~~-----------------------------------------------~~~gi~~~~ 117 (233)
...+.+|++.|.+ .. .++|..+++
T Consensus 106 ~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv 185 (320)
T PRK13631 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185 (320)
T ss_pred cccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH
Confidence 1122244444432 12 222333333
Q ss_pred HHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 118 FRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.++++.. .+|++++||||++++|+.+...+++....+... | .++++.+||+..+.
T Consensus 186 --aiAraL~---~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g--------~TiiivtHd~~~~~ 240 (320)
T PRK13631 186 --AIAGILA---IQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-N--------KTVFVITHTMEHVL 240 (320)
T ss_pred --HHHHHHH---cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEecCHHHHH
Confidence 2222222 489999999999999999988887765544322 3 57777788877553
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.9e-16 Score=135.14 Aligned_cols=142 Identities=16% Similarity=0.097 Sum_probs=91.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc--cc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK--AV---SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~--~~---~~~~l~g 100 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.. .. .....+|
T Consensus 21 ~l~~vs~~i~~Ge---------------~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 21 ALKGININIKKGE---------------VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence 5667777766555 49999999999999999999999888888877654431 00 1122345
Q ss_pred cccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.|.. ..+++|..+++ .++++.. .+|
T Consensus 86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl--~laraL~---~~p 160 (283)
T PRK13636 86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV--AIAGVLV---MEP 160 (283)
T ss_pred EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHH--HHHHHHH---cCC
Confidence 544432 11222333333 2222222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++++||||++++|++....+++..+.+....| ..+++.+||+..+.. ...|..++
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g--------~tillvsH~~~~~~~-~~dri~~l 215 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG--------LTIIIATHDIDIVPL-YCDNVFVM 215 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC--------CEEEEEecCHHHHHH-hCCEEEEE
Confidence 99999999999999998888776655433323 677888888877542 23444333
No 122
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.4e-17 Score=137.99 Aligned_cols=132 Identities=16% Similarity=0.124 Sum_probs=87.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-------cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-------VSVIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~-------~~~~~l 98 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+... ......
T Consensus 21 ~l~~vsl~i~~Ge~---------------v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 85 (288)
T PRK13643 21 ALFDIDLEVKKGSY---------------TALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKK 85 (288)
T ss_pred ceeeeEEEEcCCCE---------------EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhh
Confidence 66777887766555 99999999999999999999999888887766544311 011122
Q ss_pred cccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCCC
Q psy12735 99 YGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 99 ~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
+|++.|.+ ..+++|..+++ .+++...
T Consensus 86 ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv--aiA~aL~--- 160 (288)
T PRK13643 86 VGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV--AIAGILA--- 160 (288)
T ss_pred EEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH--HHHHHHH---
Confidence 34443322 12233333333 2222222
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|++++||||++++|+.+...+++....+... | .++++.|||+..+.
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g--------~til~vtHd~~~~~ 208 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-G--------QTVVLVTHLMDDVA 208 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEecCHHHHH
Confidence 489999999999999999988887765544322 3 57777777776554
No 123
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.62 E-value=2e-16 Score=150.71 Aligned_cols=137 Identities=12% Similarity=0.161 Sum_probs=97.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+||||||||||+|+|+|++.+.+|.+.+++.+.+.++ ..+.+|+++|++..|++++.+|+.-
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~ 580 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCC
Confidence 45567779999999999999999999999999999998877665443 2344667777766666666666521
Q ss_pred --------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 120 --------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.++++.. .+|++++||||++++|.++-..+++.
T Consensus 581 ~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall---~~p~iliLDEptS~LD~~te~~i~~~ 657 (710)
T TIGR03796 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV---RNPSILILDEATSALDPETEKIIDDN 657 (710)
T ss_pred CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh---hCCCEEEEECccccCCHHHHHHHHHH
Confidence 2222211 38999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+. .+.++|+.+|+++.+.-+ -.++.+++..+
T Consensus 658 l~~------------~~~T~IiitHrl~~i~~~----D~Iivl~~G~i 689 (710)
T TIGR03796 658 LRR------------RGCTCIIVAHRLSTIRDC----DEIIVLERGKV 689 (710)
T ss_pred HHh------------cCCEEEEEecCHHHHHhC----CEEEEEeCCEE
Confidence 432 136777778887554332 24555665433
No 124
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.62 E-value=1.9e-16 Score=140.38 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=91.0
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHHH-----
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFRA----- 120 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~~----- 120 (233)
+..|+.++|+||||||||||.|+|.|.+.+..|.+++++.+.+..+. .+.+||.+|+-..|.+++.+|+.|-
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d 438 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEAD 438 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCC
Confidence 34455599999999999999999999999999999998877665543 3458999998888888999998761
Q ss_pred ------Hhc-------------------------CCCCCCC----------CceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 121 ------VNK-------------------------PLDPGSK----------ERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 121 ------~~~-------------------------~~~~~~~----------~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
.++ .++|++| +|.++|||||.+++|.+.-..+......+
T Consensus 439 ~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 111 1122332 89999999999999998866665544444
Q ss_pred cccCceEEEccC
Q psy12735 160 TLANGERIRLLA 171 (233)
Q Consensus 160 ~l~~g~~i~~~~ 171 (233)
...++..+.++|
T Consensus 519 k~rG~~vvviaH 530 (580)
T COG4618 519 KARGGTVVVIAH 530 (580)
T ss_pred HHcCCEEEEEec
Confidence 444554444444
No 125
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.2e-16 Score=132.79 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=89.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....+++
T Consensus 20 ~l~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 20 ALHEVSLHINQGEI---------------VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred eeeeeEEEEcCCcE---------------EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 56677777766555 9999999999999999999999888888776554322111 1112333
Q ss_pred ccCCCC----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 102 LNPETR----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 102 ~~~~~~----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
+.+... .+++|..+++ .+++... .+|+++
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~il 159 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQML--AIGRALM---SQPRLL 159 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHH--HHHHHHH---hCCCEE
Confidence 333221 1222333322 2222222 489999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++|||++++|++....+.+..+.+... | ..+++.+||+..+.. ...|+.++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tiii~sH~~~~~~~-~~d~i~~l 210 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQ-G--------MTIFLVEQNANQALK-LADRGYVL 210 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCcHHHHHh-hCCEEEEE
Confidence 999999999999988877765544322 3 577777888765432 33454444
No 126
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.62 E-value=8.6e-16 Score=135.70 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=87.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee----CCccccc-------ccccccccCCCC-----------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL----NPKAVSV-------IELYGVLNPETR----------- 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~----~~~~~~~-------~~l~g~~~~~~~----------- 107 (233)
..|+.++|+|+||||||||+++|+|.+.+..|.+.+.+. +....+. ..-++++.|...
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi 127 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENV 127 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHH
Confidence 445559999999999999999999999998888877542 1111100 012333333322
Q ss_pred ------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 108 ------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 108 ------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
.+++|+.+++ .++++.+ .+|+++++|||++++|+.....
T Consensus 128 ~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV--~LARALa---~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 128 AFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV--GLARAFA---MDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCccCCHHHHHH
Confidence 3344444444 3333333 5899999999999999999988
Q ss_pred HhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 152 VMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+.+....+....+ .++++.+||+..+. ....|+.++
T Consensus 203 l~~~L~~l~~~~~--------~TII~iTHdl~e~~-~l~DrI~vl 238 (382)
T TIGR03415 203 LQDELLELQAKLN--------KTIIFVSHDLDEAL-KIGNRIAIM 238 (382)
T ss_pred HHHHHHHHHHhcC--------CEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8876655433223 68899999988763 333455444
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.62 E-value=8.2e-17 Score=133.41 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-----------------ccccc--------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-----------------SVIEL-------------- 98 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-----------------~~~~l-------------- 98 (233)
.+|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... +..+.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence 45666999999999999999999999988888776644321100 00000
Q ss_pred -------------ccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 99 -------------YGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 99 -------------~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
+|. .+.....+|+|..+++ .++++.. .+|+++++|||++++|+.+...+.+....+...
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRV--AIARALS---IRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 000 0111224555666666 4444333 589999999999999999998887766554433
Q ss_pred CceEEEccCcceEEEEeCCcCcc
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.| ..+++.+||+..+
T Consensus 164 ~~--------~tii~~sH~~~~~ 178 (230)
T TIGR01184 164 HR--------VTVLMVTHDVDEA 178 (230)
T ss_pred cC--------CEEEEEeCCHHHH
Confidence 23 4566666666543
No 128
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=1.2e-15 Score=118.41 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=88.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-----------------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----------------------------------- 94 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----------------------------------- 94 (233)
+.|+.++||||||||||||+-+++|+-.+++|.+.+.+.....++
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPl 113 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL 113 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchh
Confidence 456679999999999999999999998888887765322110000
Q ss_pred -------------cccc---cc---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 95 -------------VIEL---YG---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 95 -------------~~~l---~g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.+++ .| .....+.+.++|-.+++ .++++.+ ..|++++.|||+.++|.++-..+.|.
T Consensus 114 eL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV--AiARAfa---~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 114 ELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV--ALARAFA---GRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred hhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH--HHHHHhc---CCCCEEeccCCCCCcchhHHHHHHHH
Confidence 0001 11 12223456788888888 7777665 68999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.-.+....| +++++.|||...|.
T Consensus 189 lF~lnre~G--------~TlVlVTHD~~LA~ 211 (228)
T COG4181 189 LFALNRERG--------TTLVLVTHDPQLAA 211 (228)
T ss_pred HHHHhhhcC--------ceEEEEeCCHHHHH
Confidence 555555555 89999999976553
No 129
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1e-16 Score=135.95 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--c---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--V---SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~---~~~~l~g 100 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+... . .....++
T Consensus 16 il~~isl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 16 VLKGLNLDFSLSPV---------------TGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred cccceEEEEcCCCE---------------EEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 56777777766555 99999999999999999999998888877665433210 0 0111233
Q ss_pred cccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.|.. ..+++|..+++ .++++.. .+|
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl--~laraL~---~~p 155 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV--AIAGALV---LQA 155 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHH--HHHHHHH---cCC
Confidence 333321 12333444444 3333222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++||||++++|+.+...+++....+... | ..+++.+||+..+
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g--------~tii~vtH~~~~~ 199 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-G--------NHVIISSHDIDLI 199 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHH
Confidence 999999999999999988887765554322 3 4566666776654
No 130
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.61 E-value=9.6e-16 Score=129.88 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=79.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------cccccccccCCC------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELYGVLNPET------------------ 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~g~~~~~~------------------ 106 (233)
.|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....++++.|..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 44459999999999999999999999887777766543221100 011122222221
Q ss_pred ------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 107 ------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 107 ------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+|+|..+++ .++++.. .+|++++||||++++|+.....+++..
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv--~laral~---~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 112 HTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA--ALARAIA---LEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred ccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 23344444444 3333332 489999999999999999988887765
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+....| ..+++.+||+..+
T Consensus 187 ~~~~~~~g--------~tiiivsH~~~~~ 207 (269)
T PRK11831 187 SELNSALG--------VTCVVVSHDVPEV 207 (269)
T ss_pred HHHHHhcC--------cEEEEEecCHHHH
Confidence 55433323 5778888887665
No 131
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.61 E-value=7.9e-16 Score=135.27 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=80.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccccccccCCC----------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIELYGVLNPET---------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l~g~~~~~~---------------- 106 (233)
..|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .....++++.|..
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 100 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM 100 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHh
Confidence 45566999999999999999999999988877776544321100 0111223332222
Q ss_pred -----------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 107 -----------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 107 -----------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.....+++..+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRv--alAraL~---~~p~lllLDEPts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 101 KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV--AIGRALL---SSPRLLLMDEPLAALDDPRKYEILPYLE 175 (354)
T ss_pred hccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 23444555555 3333333 4899999999999999999888877666
Q ss_pred cccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+....| ..+++.+||+..+
T Consensus 176 ~l~~~~g--------~tiiivtH~~~~~ 195 (354)
T TIGR02142 176 RLHAEFG--------IPILYVSHSLQEV 195 (354)
T ss_pred HHHHhcC--------CEEEEEecCHHHH
Confidence 5543323 4666667776654
No 132
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=4.7e-16 Score=126.51 Aligned_cols=131 Identities=10% Similarity=0.018 Sum_probs=83.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--ccccccccc-
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVL- 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~- 102 (233)
+++++++.+.++ +.++|+||||||||||+++|+|.+.+..|.+.+.+.+.... ...+..+++
T Consensus 16 ~l~~vs~~i~~G---------------e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 16 LFSGLSFTLNAG---------------ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEecceEEECCC---------------cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 455666666554 45999999999999999999999988888776644321100 000011111
Q ss_pred -------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeC
Q psy12735 103 -------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG 139 (233)
Q Consensus 103 -------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDe 139 (233)
+.....+++|..+++ .++++.. .+|+++++||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~llllDE 155 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRV--ALARLWL---TRAPLWILDE 155 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH--HHHHHHh---cCCCEEEEeC
Confidence 111234455666665 4444443 5899999999
Q ss_pred CCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 140 DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 140 p~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|++++|++....+.+....+...+ ..+++.+||+..+
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~---------~tiii~sh~~~~i 192 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQG---------GMVILTTHQDLPV 192 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCC---------CEEEEEecChhhh
Confidence 999999999888776555443222 4566666665544
No 133
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.61 E-value=4.6e-16 Score=128.50 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=91.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....++++
T Consensus 22 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 22 ILNNISFSLRAGE---------------FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred eeeccEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 5667777776555 59999999999999999999998888887765543221110 01112222
Q ss_pred cCC---------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 103 NPE---------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 103 ~~~---------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
.+. ...++.|..+++ .++++.. .+|+++++
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llll 161 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRI--SLIRNLQ---FMPKVLLL 161 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 222 123344444444 3333332 48999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|||++++|+.+...+.+....+....| ..+++.+||+..+ + ...|+.++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tvii~sh~~~~~-~-~~d~i~~l 210 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQN--------IAVLWVTHDKDEI-N-HADKVITL 210 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEECChHHH-H-hCCEEEEE
Confidence 999999999998877765554433323 5788888888877 3 24555555
No 134
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.1e-16 Score=136.86 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=90.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l 98 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....
T Consensus 22 ~l~~vsl~i~~Ge~---------------~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 86 (287)
T PRK13641 22 GLDNISFELEEGSF---------------VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86 (287)
T ss_pred ceeeeEEEEeCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhc
Confidence 56777787766555 999999999999999999999998888777655432110 01112
Q ss_pred cccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCCC
Q psy12735 99 YGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 99 ~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
+|++.+.+ ..+|+|+.+++ .++++..
T Consensus 87 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl--~laral~--- 161 (287)
T PRK13641 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV--AIAGVMA--- 161 (287)
T ss_pred eEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH--HHHHHHH---
Confidence 33333321 12333444443 2222222
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|++++||||++++|+.....+.+..+.+.. .| ..+++.+||+..+.. +..|+.++
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g--------~tvlivsH~~~~~~~-~~d~v~~l 218 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AG--------HTVILVTHNMDDVAE-YADDVLVL 218 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 48999999999999999998887776554432 23 677777777776532 23444444
No 135
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=3.3e-16 Score=146.16 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=90.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+||||||||||+++|+|++ +..|.+.+.+.+.+.++. .+.+++++|++..|++++.+|+.-
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~ 450 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDA 450 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCC
Confidence 34566679999999999999999999999 888999888776655443 345777888877777777777621
Q ss_pred --------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 120 --------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.+||+. -.+|++++||||++++|.++-..+.+.
T Consensus 451 ~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl---l~~~~IliLDE~TSaLD~~te~~i~~~ 527 (588)
T PRK11174 451 SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL---LQPCQLLLLDEPTASLDAHSEQLVMQA 527 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH---hcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 111111 138999999999999999998888765
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+. .+.++++.+|+++.+
T Consensus 528 l~~~~----------~~~TvIiItHrl~~i 547 (588)
T PRK11174 528 LNAAS----------RRQTTLMVTHQLEDL 547 (588)
T ss_pred HHHHh----------CCCEEEEEecChHHH
Confidence 44321 235677778887444
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.9e-16 Score=128.32 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=81.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccCC----------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNPE---------------------- 105 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~~---------------------- 105 (233)
+..|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++.|.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 100 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK 100 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC
Confidence 3455569999999999999999999999888777665443211100 00112222221
Q ss_pred -------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccc
Q psy12735 106 -------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILT 160 (233)
Q Consensus 106 -------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~ 160 (233)
...++.|..+++ .++++.. .+|++++||||++++|.+....+++..+.+.
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~ia~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 101 LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV--ALARVLV---RDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 123444555555 3333333 4899999999999999999988877665543
Q ss_pred ccCceEEEccCcceEEEEeCCcCccC
Q psy12735 161 LANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 161 l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
...+ ..+++.+||+..+.
T Consensus 176 ~~~~--------~tii~~sH~~~~~~ 193 (211)
T cd03298 176 AETK--------MTVLMVTHQPEDAK 193 (211)
T ss_pred HhcC--------CEEEEEecCHHHHH
Confidence 3323 67788888887664
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.61 E-value=4.3e-16 Score=131.87 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 28 ~l~~vsl~i~~Ge~---------------~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 92 (267)
T PRK15112 28 AVKPLSFTLREGQT---------------LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92 (267)
T ss_pred eeeeeeEEecCCCE---------------EEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEE
Confidence 56677777765554 9999999999999999999999888887766543221100 00112222
Q ss_pred cCCC---------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPET---------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.|.. ..+++|..+++ .++++.. .+
T Consensus 93 ~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv--~laral~---~~ 167 (267)
T PRK15112 93 FQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL--GLARALI---LR 167 (267)
T ss_pred ecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH--HHHHHHH---hC
Confidence 2211 22344444444 3333332 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++||||++++|++....+.+....+.-..| ..+++.+|++..+. .+..|+.++
T Consensus 168 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g--------~tviivsH~~~~~~-~~~d~i~~l 223 (267)
T PRK15112 168 PKVIIADEALASLDMSMRSQLINLMLELQEKQG--------ISYIYVTQHLGMMK-HISDQVLVM 223 (267)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC--------cEEEEEeCCHHHHH-HhcCEEEEE
Confidence 999999999999999998887776555433223 57788888877653 223444333
No 138
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.61 E-value=1.5e-16 Score=133.28 Aligned_cols=131 Identities=20% Similarity=0.291 Sum_probs=84.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-----------c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-----------S 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-----------~ 94 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .
T Consensus 18 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 18 VLHGIDLEVKPGE---------------VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred eeccceEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5666777766555 4999999999999999999999888777776544321100 0
Q ss_pred cccccccccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCC
Q psy12735 95 VIELYGVLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 95 ~~~l~g~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~ 126 (233)
....++++.|.. ..+++|..+++ .++++..
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv--~la~al~ 160 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV--AIARALA 160 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH--HHHHHHh
Confidence 111223333322 22333444444 2333222
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|+++++|||++++|+.+...+.+....+.-. | ..+++.+||+..+
T Consensus 161 ---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tvi~~tH~~~~~ 207 (250)
T PRK11264 161 ---MRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-K--------RTMVIVTHEMSFA 207 (250)
T ss_pred ---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHHHH
Confidence 489999999999999999988877655443221 2 5788888888765
No 139
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=9.3e-16 Score=125.08 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC-
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP- 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~- 104 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.......+..+++.+
T Consensus 17 ~l~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 17 LFSGLSFTLAAGE---------------ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4566666665555 599999999999999999999988888877665432110000111111111
Q ss_pred ------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCC
Q psy12735 105 ------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142 (233)
Q Consensus 105 ------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~ 142 (233)
....+++|..+++ .++++.. .+|+++++|||++
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~llllDEPt~ 156 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRV--ALARLLV---SNRPIWILDEPTA 156 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHH--HHHHHHh---cCCCEEEEeCCcc
Confidence 1123445555555 3444333 5899999999999
Q ss_pred HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 143 ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 143 ~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++|+.....+++....+... | ..+++.+|++..+..
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~-~--------~tiii~sH~~~~~~~ 192 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQ-G--------GIVIAATHIPLGLPG 192 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCchhhcc
Confidence 99999988887765544322 3 567777777776655
No 140
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.61 E-value=1.6e-16 Score=131.99 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=84.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...+++
T Consensus 15 ~l~~vsl~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 15 ALDDVSFSVRPGE---------------IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred EecCceEEecCCc---------------EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4566666665555 499999999999999999999998888877665433221110 011222
Q ss_pred ccCCC---------------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 102 LNPET---------------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 102 ~~~~~---------------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
+.|.. ..+++|..+++ .++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~a 157 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL--EIARA 157 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH--HHHHH
Confidence 22221 12333444443 23332
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.. .+|+++++|||++++|+.+...+.+..+.+.. .| ..+++.+||+..+.
T Consensus 158 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~tii~vsH~~~~~~ 207 (236)
T cd03219 158 LA---TDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG--------ITVLLVEHDMDVVM 207 (236)
T ss_pred Hh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC--------CEEEEEecCHHHHH
Confidence 22 48999999999999999998888776554432 23 57888888887653
No 141
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=4.4e-16 Score=132.09 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....+|++
T Consensus 24 il~~isl~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 24 ALKNVSFEINEGE---------------YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred ceeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 4666777766555 49999999999999999999999888887766554322111 11223333
Q ss_pred cCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|.. ..+++|..+++ .++++.. .+|++
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p~l 163 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV--AIASVLA---LNPEI 163 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 3321 12333444444 2333222 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++||||++++|+.....+++..+.+...++ ..+++.+|++..+
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~--------~tiii~sH~~~~~ 206 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRK--------KTLISITHDMDEA 206 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEEechhHH
Confidence 999999999999998888776655433322 5677777777765
No 142
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.7e-16 Score=133.29 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=91.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcC---CCeEEeeeCCcccc---ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG---YPARTYTLNPKAVS---VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~---~~i~~~~~~~~~~~---~~~l~ 99 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+.. |.+.+.+.+..... ....+
T Consensus 22 ~l~~v~l~i~~Ge~---------------~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~i 86 (282)
T PRK13640 22 ALNDISFSIPRGSW---------------TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKV 86 (282)
T ss_pred ceeeEEEEEcCCCE---------------EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhhe
Confidence 56677777766555 99999999999999999999987765 66655443221100 01112
Q ss_pred ccccCC------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 100 GVLNPE------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 100 g~~~~~------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
|++.|. ...+++|..+++ .++++.. .+
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv--~laral~---~~ 161 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRV--AIAGILA---VE 161 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH--HHHHHHH---cC
Confidence 222222 123444555554 3333333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|......+++....+....| ..+++.+|++..+. ...|+.++
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g--------~tvli~tH~~~~~~--~~d~i~~l 216 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNN--------LTVISITHDIDEAN--MADQVLVL 216 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCHHHHH--hCCEEEEE
Confidence 999999999999999998888776655443323 67788888887763 34565544
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.61 E-value=1.5e-16 Score=132.59 Aligned_cols=141 Identities=20% Similarity=0.266 Sum_probs=90.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-----SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-----~~~~l~g 100 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... ...+.++
T Consensus 16 il~~~s~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 16 VLHNIDLNIDQGE---------------VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EeeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 4666777766555 4999999999999999999999988888776655432110 0111233
Q ss_pred cccCCCC------------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPETR------------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~~~------------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.|... .++.|..+++ .++++.. .+|
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~---~~p 155 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRV--AIARALA---VKP 155 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHH--HHHHHHh---cCC
Confidence 3333211 2233333333 2233222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++++|||++++|+++...+.+..+.+.. .+ ..+++.+||+..+ +....|+.++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~--------~tiii~sH~~~~~-~~~~d~i~~l 209 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAE-EG--------MTMVIVTHEIGFA-EKVASRLIFI 209 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC--------CEEEEEeCCHHHH-HHhCCEEEEE
Confidence 99999999999999998888776554432 23 5788888888875 3333454444
No 144
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.61 E-value=3.5e-16 Score=148.49 Aligned_cols=127 Identities=19% Similarity=0.162 Sum_probs=92.8
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+++|+.++|+|+||||||||+|+|+|++.+..|.+.+++.+.+.++. .+.+|++.|++..|++++.+|+.-
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCC
Confidence 3456677799999999999999999999999999999998877655443 345778888877777777777621
Q ss_pred ------HHhc-------------------------CCCCC----------CCCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 120 ------AVNK-------------------------PLDPG----------SKERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 120 ------~~~~-------------------------~~~~~----------~~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+.++ .++|+ -.+|++++||||++++|.++-..+++..+.
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0000 00111 138999999999999999998888776543
Q ss_pred ccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+ +.++++.+|+++.+
T Consensus 634 ~------------~~T~IiItHr~~~i 648 (686)
T TIGR03797 634 L------------KVTRIVIAHRLSTI 648 (686)
T ss_pred h------------CCeEEEEecChHHH
Confidence 2 14667778876544
No 145
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=8.1e-16 Score=130.90 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=91.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+|+||||||||+++|+|.+.+.+|.+.+.+......+ ....+|++
T Consensus 19 ~l~~vsl~i~~Ge---------------~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 19 ALNNINFIAPRNS---------------RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred eeeEeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 5667777776555 49999999999999999999999988888776554321111 11112333
Q ss_pred cCC------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPE------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.+. ...+++|..+++ .++++.. .+|++
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl--~laraL~---~~p~l 158 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV--AIAGVIA---MEPQV 158 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 222 122334444444 3333332 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++|||++++|+.....+++..+.+....| ..+++.+||+..+.. ...|+.++
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g--------~tvli~tH~~~~~~~-~~drv~~l 211 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYG--------MTVIFSTHQLDLVPE-MADYIYVM 211 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCHHHHHH-hCCEEEEE
Confidence 999999999999998888776555443323 567777777776533 33455444
No 146
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=1.3e-15 Score=123.13 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=76.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC-------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP------------------------- 104 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~------------------------- 104 (233)
..|+.++|+|+||||||||+++|+|.+.+..|.+.+.+.+..... ....+++.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 102 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE 102 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHH
Confidence 456669999999999999999999999888887776553321110 001111111
Q ss_pred -----------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEE
Q psy12735 105 -----------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERI 167 (233)
Q Consensus 105 -----------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i 167 (233)
....++.|..+++ .++++.. .+|+++++|||++++|+.....+.+..+.....+
T Consensus 103 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl--~la~al~---~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~---- 173 (195)
T PRK13541 103 TLYAAIHYFKLHDLLDEKCYSLSSGMQKIV--AIARLIA---CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG---- 173 (195)
T ss_pred HHHHHHHHcCCHhhhccChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----
Confidence 1123445555555 3444333 5899999999999999999877766543222222
Q ss_pred EccCcceEEEEeCCcCccC
Q psy12735 168 RLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 168 ~~~~~~~~i~et~dl~~~s 186 (233)
..+++.+|++..+.
T Consensus 174 -----~tiii~sh~~~~i~ 187 (195)
T PRK13541 174 -----GIVLLSSHLESSIK 187 (195)
T ss_pred -----CEEEEEeCCccccc
Confidence 45666666665443
No 147
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=3.1e-16 Score=146.17 Aligned_cols=139 Identities=16% Similarity=0.181 Sum_probs=95.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+|+||||||||+++|+|.+++..|.+.+.+.+.+.++ ..+.+++++|++..|++++.+|+.-
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 444 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCC
Confidence 34566679999999999999999999999999999988776654433 2344666677666666666665521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++.. .+|++++||||++++|.++...+++
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall---~~~~ililDEptsaLD~~t~~~i~~ 521 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL---RDSPILILDEATSALDTESERAIQA 521 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH---hCCCEEEEECccccCCHHHHHHHHH
Confidence 1222111 3899999999999999999888876
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
....+. .+.++|+.+|+++.+.-+ =.++.+++..+
T Consensus 522 ~l~~~~----------~~~tvI~VtHr~~~~~~~----D~Ii~l~~g~i 556 (582)
T PRK11176 522 ALDELQ----------KNRTSLVIAHRLSTIEKA----DEILVVEDGEI 556 (582)
T ss_pred HHHHHh----------CCCEEEEEecchHHHHhC----CEEEEEECCEE
Confidence 654321 236777888887443221 23455655433
No 148
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.2e-15 Score=123.05 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCeEEeeeCCccccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPARTYTLNPKAVSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i~~~~~~~~~~~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+ .+..|.+.+.+.+.. ......++++.
T Consensus 22 ~l~~vs~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~ 85 (192)
T cd03232 22 LLNNISGYVKPGT---------------LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVE 85 (192)
T ss_pred eEEccEEEEeCCc---------------EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEec
Confidence 4566666665555 49999999999999999999975 356777766543321 01111233333
Q ss_pred CCCC------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCce
Q psy12735 104 PETR------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGE 165 (233)
Q Consensus 104 ~~~~------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~ 165 (233)
|... .+++|..+++ .++++.. .+|+++++|||++++|++....+++..+.+.. .+
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv--~la~al~---~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~- 158 (192)
T cd03232 86 QQDVHSPNLTVREALRFSALLRGLSVEQRKRL--TIGVELA---AKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SG- 158 (192)
T ss_pred ccCccccCCcHHHHHHHHHHHhcCCHHHhHHH--HHHHHHh---cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cC-
Confidence 3211 4566666666 4444443 58999999999999999998887776554332 23
Q ss_pred EEEccCcceEEEEeCCcCc
Q psy12735 166 RIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 166 ~i~~~~~~~~i~et~dl~~ 184 (233)
..+++.+|++..
T Consensus 159 -------~tiiivtH~~~~ 170 (192)
T cd03232 159 -------QAILCTIHQPSA 170 (192)
T ss_pred -------CEEEEEEcCChH
Confidence 578888888764
No 149
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.1e-15 Score=126.64 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=84.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC-----------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP----------------------- 104 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~----------------------- 104 (233)
+..|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....++++.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 101 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK 101 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC
Confidence 3456669999999999999999999999888887665443211000 0011122111
Q ss_pred ------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccc
Q psy12735 105 ------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILT 160 (233)
Q Consensus 105 ------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~ 160 (233)
....+++|..+++ .+++... .+|+++++|||++++|+++...+.+....+.
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 102 LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV--ALARCLV---REQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1123444555555 3333332 4899999999999999999877776554433
Q ss_pred ccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 161 LANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 161 l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
...| ..+++.+||+..+. ....|+.++
T Consensus 177 ~~~~--------~tiii~sH~~~~~~-~~~d~i~~l 203 (232)
T PRK10771 177 QERQ--------LTLLMVSHSLEDAA-RIAPRSLVV 203 (232)
T ss_pred HhcC--------CEEEEEECCHHHHH-HhCCEEEEE
Confidence 2223 67888888888663 333444444
No 150
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.60 E-value=7.7e-16 Score=127.16 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=87.9
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh---hcCCCeEEeeeCCccccccccccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST---VLGYPARTYTLNPKAVSVIELYGV 101 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~---~~~~~i~~~~~~~~~~~~~~l~g~ 101 (233)
.+++++++.+.++.+ ++|+||||||||||+|+|+|.+. +.+|.+.+.+.+........-+++
T Consensus 21 ~~l~~vsl~i~~Ge~---------------~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 85 (226)
T cd03234 21 RILNDVSLHVESGQV---------------MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85 (226)
T ss_pred ccccCceEEEcCCeE---------------EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence 356777777766554 99999999999999999999987 677776654432211011111222
Q ss_pred ccCCC---------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 102 LNPET---------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 102 ~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
+.|.. ..+++|..+++ .+++... .
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~ 160 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRV--SIAVQLL---W 160 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHH--HHHHHHH---h
Confidence 22211 23344444444 2333222 4
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+|+++++|||++++|+.+...+.+....+... + ..+++.+|++...-+....|+.++
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~--------~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARR-N--------RIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEecCCCHHHHHhCCEEEEE
Confidence 89999999999999999988877765543322 3 577777787742223344444444
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.60 E-value=3.9e-16 Score=131.96 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=86.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....+
T Consensus 26 il~~isl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 90 (265)
T TIGR02769 26 VLTNVSLSIEEGET---------------VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDV 90 (265)
T ss_pred EeeCceeEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhce
Confidence 56777777766554 9999999999999999999999888887766543322111 11123
Q ss_pred ccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 100 GVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 100 g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
+++.|.. ..+++|..+++ .++++..
T Consensus 91 ~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv--~laral~-- 166 (265)
T TIGR02769 91 QLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI--NIARALA-- 166 (265)
T ss_pred EEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH--HHHHHHh--
Confidence 3333321 12233333333 2222222
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|+.....+++..+.+....| ..+++.+||+..+
T Consensus 167 -~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g--------~tiiivsH~~~~~ 214 (265)
T TIGR02769 167 -VKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG--------TAYLFITHDLRLV 214 (265)
T ss_pred -cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEeCCHHHH
Confidence 48999999999999999988777766554433323 5788888887765
No 152
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=8.9e-16 Score=126.89 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=93.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 18 ~l~~isl~i~~G~---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 18 VLKDINFSIKPGE---------------TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred cccceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 5667777766555 49999999999999999999999888887765432211000 00111111
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+. ...+++|..+++ .+++... .+
T Consensus 83 ~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv--~la~al~---~~ 157 (229)
T cd03254 83 LQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLL--AIARAML---RD 157 (229)
T ss_pred cCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHH--HHHHHHh---cC
Confidence 111 134555666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
|+++++|||++++|+.....+++....+. .+ ..+++.+|++..+. . ..|+ +.++...+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~--------~tii~~sh~~~~~~-~-~d~i--~~l~~g~~ 215 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM--KG--------RTSIIIAHRLSTIK-N-ADKI--LVLDDGKI 215 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc--CC--------CEEEEEecCHHHHh-h-CCEE--EEEeCCeE
Confidence 99999999999999999888776655432 12 57888899988763 3 3444 44444333
No 153
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=9.3e-16 Score=127.92 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=85.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....++++
T Consensus 16 ~l~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 16 AVNNLNLEIAKGE---------------FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EeeeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4566677766555 49999999999999999999999888887765443211100 01112222
Q ss_pred cCC-------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 103 NPE-------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 103 ~~~-------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.|. ...+++|..+++ .++++.. .+|+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ 155 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV--GVARALA---ADPP 155 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH--HHHHHHh---cCCC
Confidence 222 123444555554 3333332 4899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++|||++++|+.+...+++..+.+....| ..+++.+|++..+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g--------~tvii~sH~~~~~ 199 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELG--------KTIVFVTHDIDEA 199 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEecCHHHH
Confidence 9999999999999998887776554433223 5788888888755
No 154
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=1.7e-16 Score=128.48 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=95.7
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc--------
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI-------- 96 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~-------- 96 (233)
+++++++|.+.++.+ ++|+|+||+||||++|+++|..++.+|.+.+.+.+.......
T Consensus 17 ~~L~gvsl~v~~Gei---------------v~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 17 QALRGVSLEVERGEI---------------VALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eEEeeeeeEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 356677777766655 999999999999999999999988888877655443211111
Q ss_pred ------------------------------------cccccc-------cCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 97 ------------------------------------ELYGVL-------NPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 97 ------------------------------------~l~g~~-------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+.|..+ ++.....|+|..|.+ .++++.. .+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQML--AiaRALm---~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQML--AIARALM---SRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHH--HHHHHHh---cCCC
Confidence 111111 122234555666655 4555443 5899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCc-eEEEccCcceEEEEeCCcC
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANG-ERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g-~~i~~~~~~~~i~et~dl~ 183 (233)
+++||||+.++-+.-...+.+..+.+...+| .++.+.+|.++..++.|-.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~ 207 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRG 207 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEE
Confidence 9999999999999988888888777776655 6677777776666655533
No 155
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=8.2e-16 Score=127.50 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=91.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ..+.++++
T Consensus 17 ~l~~i~~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 17 VLRDISLDIPAGE---------------TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred ceeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 4566677765555 49999999999999999999999888887765442211000 00111111
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+. ...++.|..+++ .++++.. .+
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~ 156 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI--AIARALL---KD 156 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHH--HHHHHHh---cC
Confidence 111 224455666665 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|+.+...+++..+.+. . + ..+++.+||+..+. . ..|+.++
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tii~~sh~~~~~~-~-~d~v~~l 209 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLM-K-N--------RTTFVIAHRLSTIE-N-ADRIVVL 209 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C--------CEEEEEecCHHHHh-h-CCEEEEe
Confidence 99999999999999999888877655442 1 2 57888899998773 3 4555443
No 156
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.60 E-value=6e-16 Score=142.75 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=88.9
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+++|+.++|+||||||||||+|+|+|.+++.+|.+.+.+.+.+..+. .+.++++.|++..|++++.+|+.-
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD 422 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC
Confidence 3445667799999999999999999999999999999887766544432 234566666666666656555521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++.. .+|++++||||++++|.++...+++
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~---~~~~ililDE~ts~lD~~~~~~i~~ 499 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL---RDAPLLLLDEPTAHLDAETEALVTE 499 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh---cCCCEEEEeCcccccCHHHHHHHHH
Confidence 2222221 4899999999999999999888876
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
....+. .+.++++.+|+++.
T Consensus 500 ~l~~~~----------~~~t~i~itH~~~~ 519 (529)
T TIGR02857 500 ALRALA----------QGRTVLLVTHRLAL 519 (529)
T ss_pred HHHHhc----------CCCEEEEEecCHHH
Confidence 654331 13577777777643
No 157
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.60 E-value=7.7e-16 Score=128.02 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=93.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 18 ~l~~i~~~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (238)
T cd03249 18 ILKGLSLTIPPGK---------------TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLV 82 (238)
T ss_pred ceeceEEEecCCC---------------EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEE
Confidence 4566677765554 59999999999999999999999888887765443211000 00001111
Q ss_pred cC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.| ....+++|..+++ .+++... .+
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~la~al~---~~ 157 (238)
T cd03249 83 SQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRI--AIARALL---RN 157 (238)
T ss_pred CCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHH--HHHHHHh---cC
Confidence 11 1234566666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
|+++++|||++++|+.....+.+..+.+. .| ..+++.+||+..+. ...| ++.+++..+
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g--------~~vi~~sh~~~~~~--~~d~--v~~l~~G~i 215 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM--KG--------RTTIVIAHRLSTIR--NADL--IAVLQNGQV 215 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc--CC--------CEEEEEeCCHHHHh--hCCE--EEEEECCEE
Confidence 99999999999999999888777655443 23 67888899988773 3344 444444333
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4.7e-16 Score=133.12 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--------VSVIE 97 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--------~~~~~ 97 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+... .....
T Consensus 26 il~~is~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 90 (289)
T PRK13645 26 ALNNTSLTFKKNKV---------------TCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRK 90 (289)
T ss_pred eeeeeEEEEeCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhc
Confidence 56677777765554 99999999999999999999998888877654432110 00111
Q ss_pred ccccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 98 LYGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 98 l~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
.++++.|.. ..+|+|..+++ .++++..
T Consensus 91 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv--~laral~-- 166 (289)
T PRK13645 91 EIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV--ALAGIIA-- 166 (289)
T ss_pred cEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH--HHHHHHH--
Confidence 233333321 12233333333 2222222
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|+.....+++....+....+ ..+++.+|++..+
T Consensus 167 -~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tiiiisH~~~~~ 214 (289)
T PRK13645 167 -MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK--------KRIIMVTHNMDQV 214 (289)
T ss_pred -hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCHHHH
Confidence 48999999999999999998888776554433223 5666667776644
No 159
>KOG0055|consensus
Probab=99.60 E-value=5.3e-16 Score=149.94 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=88.0
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---ccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---YGV 101 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~g~ 101 (233)
.+++++++.+ ..|++++|||||||||||++.+|.++|++.+|.+.+++.+.+.++...+ +|.
T Consensus 1004 ~Il~~l~l~i---------------~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 1004 PVLNNLSLSI---------------RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred hhhcCCcEEe---------------cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce
Confidence 4566666665 4566799999999999999999999999999999998888877765544 788
Q ss_pred ccCCCCcCchhHHHHHHHHH-----------h-------------------------cCCCCCC----------CCceEE
Q psy12735 102 LNPETRDWYDGLLSNIFRAV-----------N-------------------------KPLDPGS----------KERKYI 135 (233)
Q Consensus 102 ~~~~~~~~~~gi~~~~~~~~-----------~-------------------------~~~~~~~----------~~~~~l 135 (233)
+.|++..|+.+|.+|+.... + ++++||+ .+|+++
T Consensus 1069 VsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkIL 1148 (1228)
T KOG0055|consen 1069 VSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKIL 1148 (1228)
T ss_pred eccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCee
Confidence 88888888888887774310 0 0111222 389999
Q ss_pred EEeCCCCHHhHHhHHHHhh
Q psy12735 136 LFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~ 154 (233)
+|||.|+++|.++-..+-+
T Consensus 1149 LLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1149 LLDEATSALDSESERVVQE 1167 (1228)
T ss_pred eeeccchhhhhhhHHHHHH
Confidence 9999999999998655543
No 160
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.60 E-value=1.6e-15 Score=127.18 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=89.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV------------ 93 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~------------ 93 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....
T Consensus 15 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 15 VLDGLNFSVAAGE---------------KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4566666665555 5999999999999999999999988888776654322110
Q ss_pred ----ccccccccccCCCC------------------------------------------------cCchhHHHHHHHHH
Q psy12735 94 ----SVIELYGVLNPETR------------------------------------------------DWYDGLLSNIFRAV 121 (233)
Q Consensus 94 ----~~~~l~g~~~~~~~------------------------------------------------~~~~gi~~~~~~~~ 121 (233)
.....++++.|... .+++|..+++ .+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~l 157 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV--AI 157 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH--HH
Confidence 01122333333221 2233333333 22
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++.. .+|+++++|||++++|+.+...+.+..+.+....| ..+++.+||+..+ +....|+.++
T Consensus 158 aral~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tiiivsH~~~~~-~~~~d~i~~l 220 (252)
T TIGR03005 158 ARALA---MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD--------LTMLLVTHEMGFA-REFADRVCFF 220 (252)
T ss_pred HHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEeCCHHHH-HHhcCEEEEE
Confidence 22222 48999999999999999998887776554433223 6888888988765 3333444333
No 161
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.60 E-value=1.3e-15 Score=124.61 Aligned_cols=123 Identities=19% Similarity=0.168 Sum_probs=79.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-ccccccccccCCC----------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-SVIELYGVLNPET---------------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-~~~~l~g~~~~~~---------------------- 106 (233)
..|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .....++++.|..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~ 101 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL 101 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence 44556999999999999999999999988888776644322110 0111122222221
Q ss_pred -------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 107 -------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 107 -------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
..+++|..+++ .+++... .+|+++++|||++++|.++...+++....+..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV--ALARCLV---RPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 23344444444 3333332 48999999999999999999888776655433
Q ss_pred cCceEEEccCcceEEEEeCCcCcc
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..+ ..+++.+|++..+
T Consensus 177 ~~~--------~tii~vsh~~~~~ 192 (213)
T TIGR01277 177 ERQ--------RTLLMVTHHLSDA 192 (213)
T ss_pred hcC--------CEEEEEeCCHHHH
Confidence 323 5677777777654
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4.7e-16 Score=132.33 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=92.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+|+||||||||+++|+|.+.+..|.+.+.+.+....+ ....+|++
T Consensus 22 ~l~~v~l~i~~Ge---------------~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (277)
T PRK13642 22 QLNGVSFSITKGE---------------WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMV 86 (277)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence 4667777776555 49999999999999999999999988888776544321111 11123333
Q ss_pred cCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 103 NPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 103 ~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
.|.. ..+++|..+++ .++++.. .+|++
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~lAraL~---~~p~l 161 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV--AVAGIIA---LRPEI 161 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH--HHHHHHH---cCCCE
Confidence 3321 12333333333 2333222 48999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
+++|||++++|+.....+++....+....| ..+++.+||+..+. ...|+.++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tiil~sH~~~~~~--~~d~i~~l~ 214 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQ--------LTVLSITHDLDEAA--SSDRILVMK 214 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHH--hCCEEEEEE
Confidence 999999999999999888776655443323 67888888888874 245554443
No 163
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.1e-16 Score=131.82 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....++++
T Consensus 18 ~l~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 18 ILKDISVKFEGGA---------------IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eeeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4566777765555 49999999999999999999999888887766543221100 00111222
Q ss_pred cC-------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeC
Q psy12735 103 NP-------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDG 139 (233)
Q Consensus 103 ~~-------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDe 139 (233)
.| .....++|..+++ .++++.. .+|+++++||
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~llllDE 157 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV--SIARTLA---NNPEVLLLDE 157 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeC
Confidence 22 1234455655555 3333333 4899999999
Q ss_pred CCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 140 DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 140 p~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++|.+....+.+..+.+....| ..+++.+||+..+. .+..|+.++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g--------~tii~~sH~~~~~~-~~~d~i~~l 205 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMN--------LTVIWITHNMEQAK-RIGDYTAFL 205 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCC--------CEEEEEeccHHHHH-HhCCEEEEE
Confidence 9999999998877766554433223 57788888887653 233454443
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.60 E-value=1.7e-15 Score=124.56 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=90.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
.+++++|.+.++. .++|+||||||||||+++|+|.+++..|.+.+.+.+....+ .....
T Consensus 20 il~~vs~~i~~G~---------------~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 84 (220)
T TIGR02982 20 VLFDINLEINPGE---------------IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNI 84 (220)
T ss_pred EEeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence 4566677765544 59999999999999999999999888887766543321111 01122
Q ss_pred ccccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 100 GVLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 100 g~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+++.+.. ..++.|..+++ .+++... .+
T Consensus 85 ~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv--~laral~---~~ 159 (220)
T TIGR02982 85 GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV--AIARALV---HR 159 (220)
T ss_pred EEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH--HHHHHHh---cC
Confidence 2222221 12334444444 3333333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|.+....+++..+.+....+ ..+++.+|++.. +.+..|+.++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tii~~sh~~~~--~~~~d~v~~l 214 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQG--------CTILIVTHDNRI--LDVADRIVHM 214 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHH--HhhCCEEEEE
Confidence 999999999999999998887776554432223 688888888863 3455555544
No 165
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=4.7e-16 Score=127.35 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=77.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccccccccCCCC------------------
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIELYGVLNPETR------------------ 107 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l~g~~~~~~~------------------ 107 (233)
+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+.... .....++++.|...
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 34999999999999999999999988888776654332100 01122334333322
Q ss_pred ---------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccc
Q psy12735 108 ---------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILT 160 (233)
Q Consensus 108 ---------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~ 160 (233)
.+++|..+++ .+++... .+|++++||||++++|.++...+.+..+.+.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRV--ALARALA---AQPELLLLDEPFSALDRALRLQLLPELKQIK 178 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 2233333333 2222222 4899999999999999999888877655543
Q ss_pred ccCceEEEccCcceEEEEeCCcCcc
Q psy12735 161 LANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 161 l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...| ..+++.+||+..+
T Consensus 179 ~~~~--------~tiii~sH~~~~~ 195 (214)
T cd03297 179 KNLN--------IPVIFVTHDLSEA 195 (214)
T ss_pred HHcC--------cEEEEEecCHHHH
Confidence 3323 5677778887765
No 166
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=1.3e-15 Score=124.11 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=93.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 23 ~l~~isl~i~~G~~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 87 (207)
T cd03369 23 VLKNVSFKVKAGEK---------------IGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTII 87 (207)
T ss_pred cccCceEEECCCCE---------------EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence 56777777766554 9999999999999999999999888887766543221000 00112222
Q ss_pred cC--------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHH
Q psy12735 103 NP--------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150 (233)
Q Consensus 103 ~~--------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~ 150 (233)
.| ....+++|..+++ .++++.. .+|++++||||++++|++...
T Consensus 88 ~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv--~laral~---~~p~llllDEP~~~LD~~~~~ 162 (207)
T cd03369 88 PQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLL--CLARALL---KRPRVLVLDEATASIDYATDA 162 (207)
T ss_pred ecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHH--HHHHHHh---hCCCEEEEeCCcccCCHHHHH
Confidence 11 1234566666666 4444443 589999999999999999988
Q ss_pred HHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 151 SVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 151 ~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+++..+.+. . + ..+++.+|++..+.. ..|+.++.
T Consensus 163 ~l~~~l~~~~-~-~--------~tiii~th~~~~~~~--~d~v~~l~ 197 (207)
T cd03369 163 LIQKTIREEF-T-N--------STILTIAHRLRTIID--YDKILVMD 197 (207)
T ss_pred HHHHHHHHhc-C-C--------CEEEEEeCCHHHHhh--CCEEEEEE
Confidence 8776655431 1 2 678888888887743 35665554
No 167
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.59 E-value=8e-16 Score=146.48 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=86.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR------ 119 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~------ 119 (233)
+++|+.++|+|||||||||++++|.|.+++.+|.+.+++.+.+.++. .+.++++.|++..|++++.+|+.-
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP 583 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCC
Confidence 44566699999999999999999999999999999887766544332 234566666666666656555521
Q ss_pred -------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 120 -------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
.++++.. .+|++++||||++++|.++-..+.+ .
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl---~~p~ILILDEpTSaLD~~te~~i~~-~ 659 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV---RKPRVLILDEATSALDAECEQLLQE-S 659 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh---cCCCEEEEEccccccCHHHHHHHHH-h
Confidence 2222221 3899999999999999998777765 1
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
. .. .+.++++.+|+++.+
T Consensus 660 ~--~~---------~~~TvIiItHrl~~i 677 (711)
T TIGR00958 660 R--SR---------ASRTVLLIAHRLSTV 677 (711)
T ss_pred h--cc---------CCCeEEEEeccHHHH
Confidence 1 11 236777778887543
No 168
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.59 E-value=6.4e-16 Score=130.66 Aligned_cols=142 Identities=20% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+...... ...++++
T Consensus 22 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 22 VAENLTVEIPDGH---------------FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EeeecceEECCCC---------------EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4566777766555 499999999999999999999998877777654432110000 0011111
Q ss_pred cC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.| ....+++|..+++ .++++.. .+
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~laral~---~~ 161 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA--WIAMVLA---QE 161 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHH--HHHHHHh---cC
Confidence 11 1123444555555 3333333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|++....+++....+....| ..+++.+||+..+ +.+..|+.++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~--------~tiii~tH~~~~~-~~~~d~i~~l 217 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKG--------YTLAAVLHDLNQA-CRYASHLIAL 217 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH-HHhCCEEEEE
Confidence 999999999999999998888776655433323 5778888888754 3334455444
No 169
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.59 E-value=1.1e-15 Score=127.02 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=93.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....++++
T Consensus 17 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 17 ILDNISLRIKPGE---------------VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred ceeceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 4566677765555 59999999999999999999999888887765443211000 00111111
Q ss_pred cC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.| ....+++|..+++ .++++.. .+
T Consensus 82 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral~---~~ 156 (237)
T cd03252 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI--AIARALI---HN 156 (237)
T ss_pred cCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH--HHHHHHh---hC
Confidence 11 1234555666666 4444333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
|++++||||++++|+.....+.+....+. . | ..+++.+||+..+. ...| ++.++...+
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tiii~sH~~~~~~--~~d~--v~~l~~G~i 214 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDIC-A-G--------RTVIIIAHRLSTVK--NADR--IIVMEKGRI 214 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-C--------CEEEEEeCCHHHHH--hCCE--EEEEECCEE
Confidence 99999999999999999888877655442 1 3 67888899998773 2333 444444433
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2e-16 Score=134.71 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=83.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-------SVIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-------~~~~l 98 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.... .....
T Consensus 22 ~l~~is~~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (280)
T PRK13649 22 ALFDVNLTIEDGS---------------YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKK 86 (280)
T ss_pred eeeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhh
Confidence 5667777776555 4999999999999999999999988877776654322110 01112
Q ss_pred cccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCCCCC
Q psy12735 99 YGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 99 ~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
++++.|.. ..+|+|..+++ .++++..
T Consensus 87 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~--- 161 (280)
T PRK13649 87 VGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV--AIAGILA--- 161 (280)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHH---
Confidence 33333321 22333444444 2332222
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|++....+.+..+.+... + ..+++.+||+..+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tiiivsH~~~~~ 208 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-G--------MTIVLVTHLMDDV 208 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeccHHHH
Confidence 489999999999999999988887765554322 2 4566666666543
No 171
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.6e-16 Score=128.02 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ...-+++
T Consensus 18 ~l~~~sl~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 18 VVEDVSLTVNSGE---------------IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 4566666665555 59999999999999999999999888887766543321111 0111222
Q ss_pred ccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 102 LNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 102 ~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
+.+.. ..+++|..+++ .+++... .+|+
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~ 157 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRV--EIARALA---ANPK 157 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHH--HHHHHHh---cCCC
Confidence 22221 22344444444 3333332 4899
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++|||++++|+.....+.+....+. ..| ..+++.+|++..+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~-~~g--------~tiii~sH~~~~~ 200 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLR-DSG--------LGVLITDHNVRET 200 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHH-hcC--------CEEEEEEcCHHHH
Confidence 999999999999999877765544332 123 5788888887654
No 172
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.59 E-value=5.8e-16 Score=130.40 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=87.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC-----Cccccc-----
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN-----PKAVSV----- 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~-----~~~~~~----- 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+ ....+.
T Consensus 21 il~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 21 GCRDVSFDLYPGE---------------VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred eeeeeeEEEeCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 5666777766555 499999999999999999999998888877665543 211110
Q ss_pred --ccccccccCC---------------------------------------------------CCcCchhHHHHHHHHHh
Q psy12735 96 --IELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 96 --~~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~ 122 (233)
...++++.+. ....++|..+++ .++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl--~la 163 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL--QIA 163 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH--HHH
Confidence 0112333222 122333444444 333
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++.. .+|+++++|||++++|+.+...+++..+.+....| ..+++.+||+..+..
T Consensus 164 ral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tii~isH~~~~~~~ 217 (258)
T PRK11701 164 RNLV---THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG--------LAVVIVTHDLAVARL 217 (258)
T ss_pred HHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEeCCHHHHHH
Confidence 3322 48999999999999999998888776554433223 677888888877643
No 173
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.5e-16 Score=138.92 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=114.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+....-.-.-.+.-.+.+|+.|+|+|+|||||||+++++.|.+.+..|+++..+..+.+++. .+.++..
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 3455666655444322233335678888999999999999999999999999999999999988776665 3457778
Q ss_pred cCCCCcCchhHHHHHHHHHhcCCC--------------------------------------CC----------CCCceE
Q psy12735 103 NPETRDWYDGLLSNIFRAVNKPLD--------------------------------------PG----------SKERKY 134 (233)
Q Consensus 103 ~~~~~~~~~gi~~~~~~~~~~~~~--------------------------------------~~----------~~~~~~ 134 (233)
+|..+.|++++++|+ ++++..+ |+ .++..|
T Consensus 418 ~Qr~hlF~~Tlr~NL--~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 418 TQRVHLFSGTLRDNL--RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred ccchHHHHHHHHHHH--hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 888888888888888 3333221 11 137788
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
+++||||.++|+++-.++++....- . .+.++++.||++..+.-. =.|+.+++-
T Consensus 496 ~lLDEPTegLD~~TE~~vL~ll~~~-~---------~~kTll~vTHrL~~le~~----drIivl~~G 548 (573)
T COG4987 496 WLLDEPTEGLDPITERQVLALLFEH-A---------EGKTLLMVTHRLRGLERM----DRIIVLDNG 548 (573)
T ss_pred EEecCCcccCChhhHHHHHHHHHHH-h---------cCCeEEEEecccccHhhc----CEEEEEECC
Confidence 8999999999999988887643211 1 136888889998877543 245555544
No 174
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.59 E-value=3e-16 Score=129.63 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=85.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh-----hhcCCCeEEeeeCCcccc-----c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS-----TVLGYPARTYTLNPKAVS-----V 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~-----~~~~~~i~~~~~~~~~~~-----~ 95 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+ .+..|.+.+.+.+....+ .
T Consensus 15 ~l~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 15 ALKDISLDIPKGEI---------------TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred eeeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 56677777766555 9999999999999999999998 777776655432211000 0
Q ss_pred ccccccccCC-------------------------------------------------CCcCchhHHHHHHHHHhcCCC
Q psy12735 96 IELYGVLNPE-------------------------------------------------TRDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 96 ~~l~g~~~~~-------------------------------------------------~~~~~~gi~~~~~~~~~~~~~ 126 (233)
...++++.|. ...+++|..+++ .++++..
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv--~la~al~ 157 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL--CLARALA 157 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH--HHHHHHh
Confidence 0111222221 134555555555 3443333
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|++....+.+..+.+.- + ..+++.+||+..+
T Consensus 158 ---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---------~-~tii~~sH~~~~~ 203 (227)
T cd03260 158 ---NEPEVLLLDEPTSALDPISTAKIEELIAELKK---------E-YTIVIVTHNMQQA 203 (227)
T ss_pred ---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---------C-cEEEEEeccHHHH
Confidence 48999999999999999998888776554321 1 4678888888755
No 175
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.59 E-value=5e-16 Score=129.18 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=84.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--ccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--VSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+... ......++++.
T Consensus 36 il~~vs~~i~~Ge---------------~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 36 ALKGISFTIEKGE---------------IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred eeeceeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence 4566666665555 599999999999999999999988887777654332110 00111122221
Q ss_pred -CC-----------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 104 -PE-----------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 104 -~~-----------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
+. ....++|..+++ .++++.. .+|+++
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~ll 175 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRA--EIAAALL---HEPEIL 175 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHh---cCCCEE
Confidence 10 112334444444 3333332 489999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+||||++++|++....+.+....+....+ ..+++.+|++..+
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tiiivsH~~~~~ 217 (236)
T cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERG--------TTVLLTSHYMKDI 217 (236)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCC--------CEEEEEecCHHHH
Confidence 99999999999998888776555433323 5777888887654
No 176
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=1.2e-15 Score=117.99 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=82.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---cccccCCCC-------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---YGVLNPETR------------------- 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~g~~~~~~~------------------- 107 (233)
..|+.++|+|||||||||++|+++.+..+..|.+.+.+.+....+...+ ..|..|.+.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r 106 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR 106 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence 4455699999999999999999999999988888776554432221111 112222221
Q ss_pred --------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 108 --------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 108 --------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
..++|-.+++ .+.+.+. -.|++++|||+++++|..+...+-+-...+..
T Consensus 107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri--AliR~Lq---~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRI--ALIRNLQ---FMPKILLLDEITSALDESNKRNIEEMIHRYVR 181 (223)
T ss_pred CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH--HHHHHhh---cCCceEEecCchhhcChhhHHHHHHHHHHHhh
Confidence 3344555554 3333221 47999999999999999887666444333332
Q ss_pred cCceEEEccCcceEEEEeCCcCccC
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.++.+++.|||-.++.
T Consensus 182 --------~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 182 --------EQNVAVLWITHDKDQAI 198 (223)
T ss_pred --------hhceEEEEEecChHHHh
Confidence 34588999999988753
No 177
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=8e-16 Score=120.32 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=95.1
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc----------ccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----------AVS 94 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~----------~~~ 94 (233)
++++.+++...++.+ +.|+|.|||||||++++++-+-+|..|.+.+.+-..+ ..+
T Consensus 20 eVLKGvSL~A~~GdV---------------isIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 20 EVLKGVSLQANAGDV---------------ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred hhhcceeeecCCCCE---------------EEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 467777777766555 9999999999999999999888887777655331110 000
Q ss_pred ------cccccccccCCCCc------------------------------------------------CchhHHHHHHHH
Q psy12735 95 ------VIELYGVLNPETRD------------------------------------------------WYDGLLSNIFRA 120 (233)
Q Consensus 95 ------~~~l~g~~~~~~~~------------------------------------------------~~~gi~~~~~~~ 120 (233)
++.-+|++-|..+. .++|..+++ .
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~--a 162 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV--A 162 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH--H
Confidence 00112333333333 455555555 5
Q ss_pred HhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 121 VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 121 ~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
++++++ .+|..++||||++++|+|....++.-.+.|..++. +++..||.+..|.-- ..-++|+..
T Consensus 163 IARaLa---meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgr---------TMv~VTHEM~FAR~V---ss~v~fLh~ 227 (256)
T COG4598 163 IARALA---MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGR---------TMVVVTHEMGFARDV---SSHVIFLHQ 227 (256)
T ss_pred HHHHHh---cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCC---------eEEEEeeehhHHHhh---hhheEEeec
Confidence 555554 69999999999999999999998887666655544 556666666665432 234556554
Q ss_pred C
Q psy12735 201 I 201 (233)
Q Consensus 201 ~ 201 (233)
.
T Consensus 228 G 228 (256)
T COG4598 228 G 228 (256)
T ss_pred c
Confidence 3
No 178
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.59 E-value=1.1e-15 Score=125.94 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=83.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE 105 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~ 105 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+........ ..++++.+.
T Consensus 15 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~-~~~~~~~q~ 78 (223)
T TIGR03740 15 AVNNISLTVPKNS---------------VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDL-HKIGSLIES 78 (223)
T ss_pred EEeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc-ccEEEEcCC
Confidence 4556666665554 599999999999999999999998887776654322110000 112222211
Q ss_pred -------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCC
Q psy12735 106 -------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142 (233)
Q Consensus 106 -------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~ 142 (233)
...++.|..+++ .++++.. .+|+++++|||++
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv--~laral~---~~p~llllDEP~~ 153 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRL--GIAIALL---NHPKLLILDEPTN 153 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHH--HHHHHHh---cCCCEEEECCCcc
Confidence 123444555554 3333333 4899999999999
Q ss_pred HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 143 ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 143 ~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++|+.+...+.+..+.+... | ..+++.+||+..+
T Consensus 154 ~LD~~~~~~l~~~L~~~~~~-~--------~tiii~sH~~~~~ 187 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPEQ-G--------ITVILSSHILSEV 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHC-C--------CEEEEEcCCHHHH
Confidence 99999988877765544322 3 5677778887754
No 179
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=1.3e-15 Score=142.37 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=88.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+++|+.++|+|+||||||||+++|+|.+.+.+|.+.+++.+...++ ..+.+++++|++..|++++.+|+..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~ 441 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI 441 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCC
Confidence 345667779999999999999999999999999999988776654433 3344677777777666666655521
Q ss_pred --------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 120 --------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.++++.. .+|++++||||++++|.++-..+.+.
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl---~~~~illlDEpts~LD~~t~~~i~~~ 518 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV---QTPQILILDEATANIDSGTEQAIQQA 518 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH---hCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1222111 38999999999999999998877665
Q ss_pred cccccccCceEEEccCcceEEEEeCCcC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
.+.+. .+.++++.+|++.
T Consensus 519 l~~~~----------~~~tvIivtHr~~ 536 (592)
T PRK10790 519 LAAVR----------EHTTLVVIAHRLS 536 (592)
T ss_pred HHHHh----------CCCEEEEEecchH
Confidence 44321 1256667777763
No 180
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.59 E-value=2.1e-15 Score=122.38 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=82.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--ccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--VSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~ 103 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+... ....+-++++.
T Consensus 16 il~~~s~~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 16 LLQQISFHLPAGG---------------LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEeeeeEEECCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 4566677765555 599999999999999999999998888877665433211 01111223332
Q ss_pred CCC------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC
Q psy12735 104 PET------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141 (233)
Q Consensus 104 ~~~------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~ 141 (233)
+.. ..++.|..+++ .+++... .+|+++++|||+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv--~laral~---~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQV--ALLRLWM---SKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHH--HHHHHHh---cCCCEEEEeCCC
Confidence 221 12333444444 3333332 489999999999
Q ss_pred CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 142 ~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+++|......+.+..+.+...+ ..+++.+|+...+
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~---------~tiii~sh~~~~~ 190 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKG---------GAVLLTSHQDLPL 190 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcC---------CEEEEEeCCchhc
Confidence 9999999888877655543222 4555556665443
No 181
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.59 E-value=5.7e-16 Score=127.87 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=81.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc----------cccccc----------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK----------AVSVIE---------------------- 97 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~----------~~~~~~---------------------- 97 (233)
..|+.++|+||||||||||+++++|.+.+..|.+.+.+.+.. ..+..+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDE 125 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345559999999999999999999999888777655432110 000000
Q ss_pred ---cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccC
Q psy12735 98 ---LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLA 171 (233)
Q Consensus 98 ---l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~ 171 (233)
.+|. .+.....++.|..+++ .+++... .+|+++++|||++++|+.+...+.+....+... +
T Consensus 126 ~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~---~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~------- 192 (224)
T cd03220 126 IIEFSELGDFIDLPVKTYSSGMKARL--AFAIATA---LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-G------- 192 (224)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-C-------
Confidence 0111 1112245677887777 5555443 589999999999999999988877665543322 2
Q ss_pred cceEEEEeCCcCccC
Q psy12735 172 HCQLLFEVGDLQYAS 186 (233)
Q Consensus 172 ~~~~i~et~dl~~~s 186 (233)
..+++.+||+..+.
T Consensus 193 -~tiii~sH~~~~~~ 206 (224)
T cd03220 193 -KTVILVSHDPSSIK 206 (224)
T ss_pred -CEEEEEeCCHHHHH
Confidence 57778788876553
No 182
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.58 E-value=1.6e-15 Score=122.76 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=80.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc--ccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS--VIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~--~~~l~g~~~ 103 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++.
T Consensus 15 ~l~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 15 LFEGLSFTLNAGE---------------ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 3556666665555 59999999999999999999999888777655443211100 001112222
Q ss_pred CC-------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCC
Q psy12735 104 PE-------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD 140 (233)
Q Consensus 104 ~~-------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep 140 (233)
+. ...+++|..+++ .++++.. .+|+++++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~llllDEP 154 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL--ALARLWL---SRAPLWILDEP 154 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH--HHHHHHh---cCCCEEEEeCC
Confidence 11 123444555555 3333333 58999999999
Q ss_pred CCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 141 VDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 141 ~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
++++|......+.+....+...+. .+++.+|+.
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~---------tii~~sH~~ 187 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGG---------IVLLTTHQD 187 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCC---------EEEEEEccc
Confidence 999999998887776555433333 455555554
No 183
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=2.9e-16 Score=144.29 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ..-+|+
T Consensus 26 il~~vsl~i~~Ge~---------------~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 26 VLKGIDFTLHAGEV---------------HALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred eeeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 56677777765554 99999999999999999999998877777654422111000 000111
Q ss_pred cc-------------------------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 102 LN-------------------------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 102 ~~-------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
+. .....+|+|..+++ .++++.. .+|++++||
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~aL~---~~p~lllLD 165 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIV--EILRGLM---RDSRILILD 165 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEE
Confidence 11 12234566777777 5555444 589999999
Q ss_pred CCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 139 GDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
||++++|+.....+.+..+.+... | ..+|+.+||+..+.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~-g--------~tiiivtHd~~~~~ 204 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQ-G--------VGIVFISHKLPEIR 204 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHHH
Confidence 999999999988887765554322 3 56777788877653
No 184
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=9.6e-16 Score=126.77 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=89.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc--cccc----c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS--VIEL----Y 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~--~~~l----~ 99 (233)
++++++|++.++.+ ++++||||+||||++|+|.|.+.+.+|.+.+.+..|..-. ..+- +
T Consensus 39 AVqdisf~IP~G~i---------------vgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 39 AVQDISFEIPKGEI---------------VGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103 (325)
T ss_pred hhheeeeecCCCcE---------------EEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHh
Confidence 66777777766665 9999999999999999999999999999999888873310 0000 1
Q ss_pred ccccC--------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 100 GVLNP--------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 100 g~~~~--------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
|...| ..+..|.|.+-++ +++..+ .+.|+++
T Consensus 104 gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmra--eLaaaL---Lh~p~VL 178 (325)
T COG4586 104 GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRA--ELAAAL---LHPPKVL 178 (325)
T ss_pred hhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHH--HHHHHh---cCCCcEE
Confidence 11100 0112233333333 332222 2689999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|||||-++|+.....+.+-.+..+...+ .+++..||+++.+.
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~--------aTVllTTH~~~di~ 221 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLKEYNEERQ--------ATVLLTTHIFDDIA 221 (325)
T ss_pred EecCCccCcchhHHHHHHHHHHHHHHhhC--------ceEEEEecchhhHH
Confidence 99999999999887777665554444333 77888888887664
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.9e-16 Score=131.17 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--c---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--V---SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~---~~~~l~g 100 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+... . .....++
T Consensus 17 ~l~~vsl~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 17 ALKGINFKAEKGE---------------MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 4566777766555 499999999999999999999998888877665533210 0 0112233
Q ss_pred cccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.|.. ..+++|..+++ .++++.. .+|
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv--~laral~---~~p 156 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRV--AIAGILA---MKP 156 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCC
Confidence 333321 22333444444 2333222 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++++|||++++|+.+...+++....+... | ..+++.+||+..+.. ...|+.++
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~--------~til~vtH~~~~~~~-~~d~i~~l 210 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKE-G--------ITIIISTHDVDLVPV-YADKVYVM 210 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEecCHHHHHH-hCCEEEEE
Confidence 999999999999999998887766554322 3 567777777775542 23444333
No 186
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.58 E-value=6.5e-16 Score=132.96 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=75.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--cccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~ 103 (233)
++++++|.+.++. .++|+|||||||||++++|+|.+.+..|.+.+.+.+.... ...+.+|++.
T Consensus 17 ~l~~is~~i~~Ge---------------i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 17 ALDEVSFEAQKGR---------------IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEeEEEEeCCe---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 4556666665555 5999999999999999999999998888877655432110 1112233333
Q ss_pred CCCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEE
Q psy12735 104 PETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYIL 136 (233)
Q Consensus 104 ~~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lv 136 (233)
+... .++.|+.+++ .++++.. .+|++++
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~lli 156 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV--GLAQALI---HDPKVLI 156 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHH--HHHHHHh---cCCCEEE
Confidence 3221 2334444444 3333332 4899999
Q ss_pred EeCCCCHHhHHhHHHHhhccccc
Q psy12735 137 FDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 137 lDep~~~~~~~~l~~~l~~~~~l 159 (233)
||||++++|+.+...+.+..+.+
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999988877765554
No 187
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=8.1e-16 Score=128.24 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=85.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc------cc---ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK------AV---SVI 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~------~~---~~~ 96 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+.. .. ...
T Consensus 17 il~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 17 ALFDITLDCPQGE---------------TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred eEeeeeeEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 5566677765554 59999999999999999999999888887766543210 00 001
Q ss_pred cccccccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 97 ELYGVLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 97 ~l~g~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
..++++.|.. ..+++|..+++ .+++...
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~-- 157 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRV--AIARALM-- 157 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH--HHHHHHh--
Confidence 1123333222 12333444444 3333332
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|+++++|||++++|+++...+++..+.+.. .| ..+++.+||+..+
T Consensus 158 -~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~--------~tii~~sh~~~~~ 204 (242)
T PRK11124 158 -MEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG--------ITQVIVTHEVEVA 204 (242)
T ss_pred -cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC--------CEEEEEeCCHHHH
Confidence 48999999999999999998888776554422 23 6788888888765
No 188
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=2.1e-15 Score=122.65 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=90.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee----e--CCc--------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT----L--NPK-------- 91 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~----~--~~~-------- 91 (233)
+++++++.+.++.+ ++|+||||||||||+++++|.+.+..|.+.+.+ + ++.
T Consensus 20 il~~~s~~i~~G~~---------------~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~e 84 (204)
T cd03250 20 TLKDINLEVPKGEL---------------VAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRE 84 (204)
T ss_pred eeeeeeEEECCCCE---------------EEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHH
Confidence 56677777765554 999999999999999999999988888775432 0 110
Q ss_pred ------cccc---cc---cccc---c-----------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh
Q psy12735 92 ------AVSV---IE---LYGV---L-----------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 92 ------~~~~---~~---l~g~---~-----------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
.... .+ ..+. + +.....++.|..+++ .++++.. .+|+++++|||++++|
T Consensus 85 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv--~laral~---~~p~llllDEP~~~LD 159 (204)
T cd03250 85 NILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI--SLARAVY---SDADIYLLDDPLSAVD 159 (204)
T ss_pred HhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH--HHHHHHh---cCCCEEEEeCccccCC
Confidence 0000 00 0010 1 112356788888888 5666554 6899999999999999
Q ss_pred HHhHHHHhhc-cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 146 IENMNSVMDD-NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 146 ~~~l~~~l~~-~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
++....+++. ....... + ..+++.+|++..+.. ..|+.+
T Consensus 160 ~~~~~~l~~~ll~~~~~~-~--------~tvi~~sh~~~~~~~--~d~i~~ 199 (204)
T cd03250 160 AHVGRHIFENCILGLLLN-N--------KTRILVTHQLQLLPH--ADQIVV 199 (204)
T ss_pred HHHHHHHHHHHHHHhccC-C--------CEEEEEeCCHHHHhh--CCEEEE
Confidence 9988777653 2222112 2 677888888766653 344433
No 189
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=2.6e-15 Score=139.82 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=89.0
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+.+|+.++|+||||||||||+++|+|.+++.+|.+.+.+.+.+.++. .+.++++.|++..|++++.+|+..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 440 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN 440 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc
Confidence 3456677799999999999999999999999999998887765543332 233556666655555555555411
Q ss_pred --------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 120 --------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.++++.. .+|++++||||++++|.++-..+.+.
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall---~~~~ililDE~ts~lD~~t~~~i~~~ 517 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL---HDAPLLLLDEPTEGLDAETERQILEL 517 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2222221 48999999999999999998887765
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
...+. ++.++++.+|+++.+.
T Consensus 518 l~~~~----------~~~tviiitHr~~~~~ 538 (574)
T PRK11160 518 LAEHA----------QNKTVLMITHRLTGLE 538 (574)
T ss_pred HHHHc----------CCCEEEEEecChhHHH
Confidence 44331 1357777788876654
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1e-15 Score=126.91 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=91.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
+++++++.+.++ +.++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....++++.+
T Consensus 15 il~~i~~~i~~G---------------e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 15 ALDGVSLDIKEG---------------EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred eeccceEEECCC---------------CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 456666666554 459999999999999999999999988887766543221110 1122333333
Q ss_pred CCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 105 ETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 105 ~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
... .++.|..+++ .++++.. .+|++++|
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl--~laral~---~~p~llll 154 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRV--AIARALV---NEPKVLLL 154 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 222 2333444443 2222222 48999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
|||++++|+.+...+.+..+.+.-.+| .++++.+|++..+ +....|+.++.
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~~~--------~tiii~sh~~~~~-~~~~d~i~~l~ 205 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELG--------ITFVFVTHDQEEA-LTMSDRIAVMN 205 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC--------CEEEEEeCCHHHH-HHhcCEEEEEE
Confidence 999999999998887766554432223 6788888888765 44455665553
No 191
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.58 E-value=3.2e-16 Score=132.03 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=85.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+++|+|...+..|.+.+.+.+..... ....++++
T Consensus 17 il~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 17 LLDDVSLTLRPGE---------------VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eeeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4666777765555 59999999999999999999998887777655432211000 00011111
Q ss_pred -----------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCC-----C
Q psy12735 103 -----------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGS-----K 130 (233)
Q Consensus 103 -----------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~-----~ 130 (233)
+.....+++|..+++ .++++.. . .
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv--~la~al~--~~~~~~~ 157 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV--QLARVLA--QLWEPDG 157 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHh--cccccCC
Confidence 111234555666665 3333332 1 2
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+|++++||||++++|+.+...+++..+.+....| ..+++.+||+..+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tiii~sH~~~~~ 204 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG--------LAVIVVLHDLNLA 204 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEECCHHHH
Confidence 7999999999999999998887776554431223 5677778887755
No 192
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.58 E-value=7.7e-16 Score=143.19 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=91.7
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+|+||||||||+++|+|.+++.+|.+.+.+.+.+.++.. +.+++++|++..|++++.+|+.-
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 433 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQ 433 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCC
Confidence 4456677999999999999999999999999999988876554433322 23555555555555555544420
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++.. .+|++++||||++++|.++-..+++
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall---~~~~illLDEpts~LD~~~~~~i~~ 510 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL---KDAPILILDEATSALDNESERLVQA 510 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh---cCCCEEEEeCccccCCHHHHHHHHH
Confidence 2222222 4899999999999999999888876
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
....+. .+..+|+.||++...+-+ =.++.+++..
T Consensus 511 ~L~~~~----------~~~tiIiitH~~~~~~~~----D~ii~l~~g~ 544 (571)
T TIGR02203 511 ALERLM----------QGRTTLVIAHRLSTIEKA----DRIVVMDDGR 544 (571)
T ss_pred HHHHHh----------CCCEEEEEehhhHHHHhC----CEEEEEeCCE
Confidence 544321 135777778886543222 2345555443
No 193
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=8.5e-16 Score=146.01 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=91.5
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+++|+.++|+|+||||||||+|+|+|.+++..|.+.+++.+.+.++. ++.+++++|++..|++++.+|+.-
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY 565 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC
Confidence 3445677799999999999999999999999999999888776554432 334667777766666666666521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++. -.+|++++||||++++|.++-..+.+
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal---l~~p~iliLDE~Ts~LD~~te~~i~~ 642 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL---LRDPPILLLDEPTSAMDNRSEERFKD 642 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 222221 14899999999999999999888876
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
....+. .+.++++.+|+++.+
T Consensus 643 ~l~~~~----------~~~T~iiItHrl~~~ 663 (694)
T TIGR03375 643 RLKRWL----------AGKTLVLVTHRTSLL 663 (694)
T ss_pred HHHHHh----------CCCEEEEEecCHHHH
Confidence 544321 136778888888654
No 194
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3e-15 Score=116.82 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=87.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHHHHhcCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~ 126 (233)
.+|+.++|+|+|||||||++++|+|.+.+..|.+.+.+.+..... .....++..| ++.|..+++ .+++...
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----lS~G~~~r~--~l~~~l~ 96 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ----LSGGQRQRV--ALARALL 96 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee----CCHHHHHHH--HHHHHHh
Confidence 345559999999999999999999999988888887665433211 1223455544 789999988 5555443
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.+|+++++|||+.++|.++...+.+....+... + ..+++.+|++..+..
T Consensus 97 ---~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~--------~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 ---LNPDLLLLDEPTSGLDPASRERLLELLRELAEE-G--------RTVIIVTHDPELAEL 145 (157)
T ss_pred ---cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHHHH
Confidence 479999999999999999987776654433222 2 577888888877655
No 195
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-15 Score=129.62 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=77.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccc---------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVL--------------------------- 102 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~--------------------------- 102 (233)
..|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+.........++++
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~ 110 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMG 110 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccc
Confidence 34555999999999999999999999888777765543211000000001111
Q ss_pred --------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 103 --------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 103 --------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
+.....+++|..+++ .++++.. .+|+++++|||++++|+.....+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv--~laraL~---~~p~llllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV--FLARAIA---QQGQVILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred cccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 111123455555555 3444333 489999999999999999988887765
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..+... | ..+++.+||+..+
T Consensus 186 ~~~~~~-g--------~tviivsH~~~~~ 205 (272)
T PRK15056 186 RELRDE-G--------KTMLVSTHNLGSV 205 (272)
T ss_pred HHHHhC-C--------CEEEEEeCCHHHH
Confidence 554322 3 5677778887655
No 196
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.4e-15 Score=123.30 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=92.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++ +.++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 16 ~l~~i~~~i~~G---------------e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 16 VLKDVSFTIPAG---------------KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred eeeeeEEEEcCC---------------CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 456666666554 459999999999999999999999888887765432211000 00011111
Q ss_pred cC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+ ....+++|..+++ .++++.. .+
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl--~la~aL~---~~ 155 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV--AIARAIL---KN 155 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH--HHHHHHh---cC
Confidence 11 1134566666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
|++++||||++++|+++...+++....+.. | ..+++.+|++..+.- ..|+ +.+++..+
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~--------~tiii~sh~~~~~~~--~d~~--~~l~~g~i 213 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSK--G--------RTTIVIAHRLSTIVN--ADKI--IVLKDGRI 213 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcC--C--------CEEEEEcCCHHHHHh--CCEE--EEEECCEE
Confidence 999999999999999998887766544322 3 578888888887732 3444 44444433
No 197
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.58 E-value=6.3e-16 Score=147.22 Aligned_cols=124 Identities=20% Similarity=0.230 Sum_probs=90.1
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+.+|+.++|+||||||||||+|+|+|++.+..|.+.+++.+.+.++. ++.+|+++|++..|++++.+|+.-
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~ 575 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKEN 575 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCC
Confidence 446677799999999999999999999999999999988776554433 334677777776666666666521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++. -.+|++++||||++++|.++-..+++
T Consensus 576 ~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal---l~~p~iliLDE~Ts~LD~~te~~i~~ 652 (708)
T TIGR01193 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL---LTDSKVLILDESTSNLDTITEKKIVN 652 (708)
T ss_pred CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH---hhCCCEEEEeCccccCCHHHHHHHHH
Confidence 111111 13899999999999999999888776
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
....+ . +.++|+.+|+++.+
T Consensus 653 ~L~~~--~---------~~T~IiitHr~~~~ 672 (708)
T TIGR01193 653 NLLNL--Q---------DKTIIFVAHRLSVA 672 (708)
T ss_pred HHHHh--c---------CCEEEEEecchHHH
Confidence 65432 1 24667777877544
No 198
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.58 E-value=7e-16 Score=128.99 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCeEEeeeCCccccc----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPARTYTLNPKAVSV----IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i~~~~~~~~~~~~----~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.. ++..|.+.+.+.+....+. ...+
T Consensus 16 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 16 ILRGLNLEVRPGE---------------VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eeecceeEEcCCC---------------EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 4566666665555 49999999999999999999984 5666666544322110000 0001
Q ss_pred ccccCC-------------------------------------------------------C-CcCchhHHHHHHHHHhc
Q psy12735 100 GVLNPE-------------------------------------------------------T-RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 100 g~~~~~-------------------------------------------------------~-~~~~~gi~~~~~~~~~~ 123 (233)
+++.+. . ...++|..+++ .+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv--~lar 158 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN--DILQ 158 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH--HHHH
Confidence 111000 1 14566666666 4444
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.. .+|+++++|||++++|.++...+.+..+.+.-. + ..+++.+||+..+
T Consensus 159 al~---~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~--------~tiii~sH~~~~~ 208 (248)
T PRK09580 159 MAV---LEPELCILDESDSGLDIDALKIVADGVNSLRDG-K--------RSFIIVTHYQRIL 208 (248)
T ss_pred HHH---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHHHH
Confidence 443 589999999999999999988887655443222 2 5677777876644
No 199
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=3.9e-16 Score=127.51 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=84.2
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee-----------eCCccc------------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT-----------LNPKAV------------------------ 93 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~-----------~~~~~~------------------------ 93 (233)
+..|+.++|+|+||||||||+|+|+|.+.|+.|++...+ .+|...
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 345666999999999999999999999999999886543 122100
Q ss_pred ---ccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEcc
Q psy12735 94 ---SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170 (233)
Q Consensus 94 ---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~ 170 (233)
.+.++=.+.++.-..+|.|+..|+...++.. .+|+++++||.++.-|+.....-.+....+...+
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-----~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~------- 197 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-----VEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN------- 197 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-----cCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC-------
Confidence 0011111334444678889999995554443 5899999999998888887766555444333333
Q ss_pred CcceEEEEeCCcCccCh
Q psy12735 171 AHCQLLFEVGDLQYASP 187 (233)
Q Consensus 171 ~~~~~i~et~dl~~~sP 187 (233)
..+++.+||+..+.-
T Consensus 198 --~tiv~VSHd~~~I~~ 212 (249)
T COG1134 198 --KTIVLVSHDLGAIKQ 212 (249)
T ss_pred --CEEEEEECCHHHHHH
Confidence 466666777665543
No 200
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.1e-15 Score=140.42 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=102.0
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------cccccccccC----------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELYGVLNP---------------- 104 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~g~~~~---------------- 104 (233)
-.+..|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+....+ ...-++++.|
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 455677889999999999999999999998877777665432211000 0011222222
Q ss_pred -----------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 105 -----------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 105 -----------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
..+++|+|+.+++ .++++.. .+|+++++|||++++|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv--~iAraL~---~~p~llllDEPts~LD~~~~ 499 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI--CIARALA---LNPKVIIADEAVSALDVSIR 499 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHH
Confidence 2235556666666 4444443 58999999999999999999
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC------C-CC-C--cchHHHHHHHhhccc
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD------P-IN-L--GYQPYWTRWVNLNVK 218 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~------~-~~-~--~~~~~~~swl~~~~~ 218 (233)
..+++..+.+....| ..+|+.+||+..+.- ...|..+++-+ + .. + ..++|+..++...|.
T Consensus 500 ~~i~~ll~~l~~~~g--------~tvi~isHdl~~v~~-~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~~ 569 (623)
T PRK10261 500 GQIINLLLDLQRDFG--------IAYLFISHDMAVVER-ISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPV 569 (623)
T ss_pred HHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhhCCC
Confidence 888887665543323 678888888876642 23444444322 1 11 1 245788888887763
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.57 E-value=5.9e-16 Score=127.20 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=85.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
.++++++.+.++.+ ++|+||||||||||+++|+|...+.+|.+.+.+.+....+ ....++++
T Consensus 19 ~l~~i~~~i~~G~~---------------~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 19 ALDNVSLTIRAGEK---------------VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred cccceEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 56677777765554 9999999999999999999998877777655432210000 00011111
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.|. ...+++|..+++ .++++.. .+
T Consensus 84 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl--~la~al~---~~ 158 (220)
T cd03245 84 PQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAV--ALARALL---ND 158 (220)
T ss_pred CCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHH--HHHHHHh---cC
Confidence 111 124566666666 4444333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|+++++|||++++|..+...+.+..+.+.. ...+++.+||+..+
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----------~~tii~~sH~~~~~ 202 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLG----------DKTLIIITHRPSLL 202 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----------CCEEEEEeCCHHHH
Confidence 999999999999999999888776554321 15788888888754
No 202
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4e-16 Score=131.13 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=87.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+|+||||||||+++|+|.+.+.+|.+.+.+.+....+ ....++++
T Consensus 17 il~~is~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 17 ILNDLSLSLPTGK---------------ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEeeeeeEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4556666665544 59999999999999999999998887777665432211000 00112222
Q ss_pred cCC---------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.|. ...+|+|..+++ .++++.. .+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~ 156 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRA--FLAMVLA---QD 156 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHH--HHHHHHh---cC
Confidence 111 123444555555 3333333 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++||||++++|+++...+.+..+.+... + ..+++.+||+..+. ....|+.++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~--------~tiii~tH~~~~~~-~~~d~i~~l 211 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQ-G--------KTVVTVLHDLNQAS-RYCDHLVVL 211 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-C--------CEEEEEECCHHHHH-HhcCEEEEE
Confidence 9999999999999999988887765544322 2 57778888877543 223444433
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.57 E-value=1.3e-15 Score=126.16 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=83.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh----cCCCeEEeeeCCcccccc-cccccccCC-------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV----LGYPARTYTLNPKAVSVI-ELYGVLNPE------------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~----~~~~i~~~~~~~~~~~~~-~l~g~~~~~------------------- 105 (233)
.+|+.++|+||||||||||+++|+|.+.+ .+|.+.+.+.+....... ..++++.|.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 89 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL 89 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence 45566999999999999999999999987 677776544322111000 112222221
Q ss_pred ---------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 106 ---------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 106 ---------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
...+++|..+++ .++++.. .+|++++||||++++|......+
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv--~laral~---~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 90 RSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRV--MIALALL---LEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHH--HHHHHHh---cCCCEEEEcCCccccCHHHHHHH
Confidence 123444555555 3333332 48999999999999999998877
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+....+....+ ..+++.+|++..+.. ...|+.++
T Consensus 165 ~~~l~~~~~~~~--------~tiii~sH~~~~~~~-~~d~i~~l 199 (230)
T TIGR02770 165 LKLLRELRQLFG--------TGILLITHDLGVVAR-IADEVAVM 199 (230)
T ss_pred HHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 766554433223 578888888876532 23444433
No 204
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.57 E-value=2e-15 Score=152.52 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=92.3
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhh------------------------------------------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTV------------------------------------------------ 78 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~------------------------------------------------ 78 (233)
-.+++|+.++|||||||||||++++|.|+|.+
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566777999999999999999999999987
Q ss_pred ------cCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH------------------------------
Q psy12735 79 ------LGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR------------------------------ 119 (233)
Q Consensus 79 ------~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~------------------------------ 119 (233)
..|.+.+.+.+.+.++. ++.+|++.|++..|++++.+|+.-
T Consensus 1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~Gy 1348 (1466)
T PTZ00265 1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY 1348 (1466)
T ss_pred ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcccc
Confidence 47788887777665543 345788888888887777777621
Q ss_pred -------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeC
Q psy12735 120 -------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG 180 (233)
Q Consensus 120 -------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~ 180 (233)
.+||+. -.+|++++||||++++|.++-..+.+....+.. ..+.++|+.+|
T Consensus 1349 dT~VGe~G~~LSGGQkQRIaIARAL---lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--------~~~~TvIiIaH 1417 (1466)
T PTZ00265 1349 DTNVGPYGKSLSGGQKQRIAIARAL---LREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--------KADKTIITIAH 1417 (1466)
T ss_pred CCccCCCCCcCCHHHHHHHHHHHHH---hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--------cCCCEEEEEec
Confidence 111111 138999999999999999998777665443211 11357777788
Q ss_pred CcCcc
Q psy12735 181 DLQYA 185 (233)
Q Consensus 181 dl~~~ 185 (233)
.++.+
T Consensus 1418 Rlsti 1422 (1466)
T PTZ00265 1418 RIASI 1422 (1466)
T ss_pred hHHHH
Confidence 87443
No 205
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=5.5e-17 Score=128.63 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL----YGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l----~g~ 101 (233)
++.+.++.+.++.+ |+++||||+||||++.++.|+..+++|++.+.+.+...+.+.+. +||
T Consensus 19 Vv~~Vsl~v~~GEi---------------VGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 19 VVNDVSLEVNSGEI---------------VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred eeeeeeEEEcCCcE---------------EEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 56678888876666 99999999999999999999999999999887776644443322 456
Q ss_pred ccCCCCcC-------------------------------------------------chhHHHHHHHHHhcCCCCCCCCc
Q psy12735 102 LNPETRDW-------------------------------------------------YDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 102 ~~~~~~~~-------------------------------------------------~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.+|++..| |+|-..++ ++|++++ .+|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~--EIARaLa---~~P 158 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV--EIARALA---ANP 158 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH--HHHHHHh---cCC
Confidence 66665433 33333333 4444443 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFE 178 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~e 178 (233)
++++||||.++.|+-....+-...+.|.-.+--++.-.||++-.+.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~ 204 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLD 204 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHh
Confidence 9999999999999988777655555544444455555566664443
No 206
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.57 E-value=2.5e-15 Score=126.30 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=86.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh----cCCCeEEeeeCCccccc-ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV----LGYPARTYTLNPKAVSV-IELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~----~~~~i~~~~~~~~~~~~-~~l~g 100 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+ .+|.+.+.+.+...... ...++
T Consensus 18 il~~vsl~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 18 LVHGVSLTLQRGR---------------VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred eecceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 5666777766555 4999999999999999999999887 66766554322110000 01112
Q ss_pred cccCC--------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 101 VLNPE--------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 101 ~~~~~--------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
++.|. ...+++|..+++ .++++.. .
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv--~laral~---~ 157 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM--MIALALL---C 157 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH--HHHHHHh---c
Confidence 22111 223455555555 3444333 5
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|++++||||++++|..+...+++..+.+....| ..+++.+|++..+.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g--------~til~~sH~~~~~~ 205 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRA--------LGMLLVTHDMGVVA 205 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC--------cEEEEEecCHHHHH
Confidence 8999999999999999998777766554433223 67888888887753
No 207
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.57 E-value=3.2e-15 Score=124.41 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=89.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP 104 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~ 104 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++.+
T Consensus 15 il~~is~~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 15 ALDDVNLEVPTGS---------------LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred eeeeEEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 5566666665555 59999999999999999999999888887766543321111 1112333333
Q ss_pred CCC-----------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 105 ETR-----------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 105 ~~~-----------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
... .++.|..+++ .+++... .+|+++++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl--~laral~---~~p~llll 154 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV--ALARALA---VEPQVLLL 154 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEE
Confidence 222 2233333333 2222222 48999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|||++++|+++...+++....+....+ ..+++.+|++..+. ....|+.++
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~~--------~tvli~sH~~~~~~-~~~d~i~~l 204 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVH--------VTTVFVTHDQEEAM-EVADRIVVM 204 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHH-hhcCEEEEE
Confidence 999999999999888776554332223 68888888887653 333444333
No 208
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.1e-15 Score=124.32 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=84.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccCC------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNPE------------------------ 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~~------------------------ 105 (233)
+|+.++|+|||||||||++++|+|.+.+..|.+.+.+.+..... .....+++.+.
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 45559999999999999999999999888887766543321100 01112222221
Q ss_pred -----------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 106 -----------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 106 -----------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
...+++|..+++ .++++.. .+|+++++|||++++|..+...+.+..+.+.-.
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRV--AIARALV---VNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHH--HHHHHHH---cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 123444555554 3333332 489999999999999999988877765544322
Q ss_pred CceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+ .++++.+|++..+ +....|+.++
T Consensus 179 ~~--------~tili~tH~~~~~-~~~~d~i~~l 203 (235)
T cd03299 179 FG--------VTVLHVTHDFEEA-WALADKVAIM 203 (235)
T ss_pred cC--------CEEEEEecCHHHH-HHhCCEEEEE
Confidence 23 6888888988765 4334455444
No 209
>KOG0055|consensus
Probab=99.57 E-value=1.3e-15 Score=147.17 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---cccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---YGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+.+|+.|+|||||||||||++++|.|+|+|..|.+.+.+.+.+.+..+.+ +|.+.|++-.|++++.+|+..
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence 3445566699999999999999999999999999999998888766654444 677777776666666666521
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
++|++.. .+|++++|||+|+++|.++-..+.+
T Consensus 454 at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv---~~P~ILLLDEaTSaLD~~se~~Vq~ 530 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV---RNPKILLLDEATSALDAESERVVQE 530 (1228)
T ss_pred ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH---hCCCEEEecCcccccCHHHHHHHHH
Confidence 2222222 4899999999999999998766554
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccChh
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYASPA 188 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa 188 (233)
....... | .+-++.+|.|+.+.-|
T Consensus 531 ALd~~~~--g--------rTTivVaHRLStIrna 554 (1228)
T KOG0055|consen 531 ALDKASK--G--------RTTIVVAHRLSTIRNA 554 (1228)
T ss_pred HHHHhhc--C--------CeEEEEeeehhhhhcc
Confidence 4322111 2 3555557877766654
No 210
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.57 E-value=9.4e-16 Score=126.39 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=83.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee----CCccccc------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL----NPKAVSV------ 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~----~~~~~~~------ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+- +....+.
T Consensus 23 il~~vs~~i~~Ge---------------~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~ 87 (224)
T TIGR02324 23 VLKNVSLTVNAGE---------------CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEV 87 (224)
T ss_pred EEecceEEECCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHH
Confidence 4566777766555 49999999999999999999999888887776411 1110000
Q ss_pred -ccccccccCCC------------------------------------------------CcCchhHHHHHHHHHhcCCC
Q psy12735 96 -IELYGVLNPET------------------------------------------------RDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 96 -~~l~g~~~~~~------------------------------------------------~~~~~gi~~~~~~~~~~~~~ 126 (233)
...++++.|.. ..++.|..+++ .++++..
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl--~laral~ 165 (224)
T TIGR02324 88 RRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV--NIARGFI 165 (224)
T ss_pred HhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH--HHHHHHh
Confidence 01133333322 12233333333 2222222
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|+++++|||++++|++....+++..+.+.-. | ..+++.+|++..+
T Consensus 166 ---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g--------~tii~vsH~~~~~ 212 (224)
T TIGR02324 166 ---ADYPILLLDEPTASLDAANRQVVVELIAEAKAR-G--------AALIGIFHDEEVR 212 (224)
T ss_pred ---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHHHH
Confidence 489999999999999999998887766554322 3 5677777776544
No 211
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-15 Score=135.85 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=108.4
Q ss_pred HHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---ccccccccc
Q psy12735 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLN 103 (233)
Q Consensus 27 ~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~ 103 (233)
.+++++...++- .-+-.+.-.++.|+.++|+|+|||||||++++|+|++.+..|.+.+++++...++ +.+-..+++
T Consensus 323 ~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 323 LENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred ecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 446666665553 2334445567778889999999999999999999999999999998877665444 334456666
Q ss_pred CCCCcCchhHHHHHHH------------------------------------------------HHhcCCCCCCCCceEE
Q psy12735 104 PETRDWYDGLLSNIFR------------------------------------------------AVNKPLDPGSKERKYI 135 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~------------------------------------------------~~~~~~~~~~~~~~~l 135 (233)
|.++.+.+++.+|+.- .++++.. .++.++
T Consensus 402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll---~~~~l~ 478 (559)
T COG4988 402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL---SPASLL 478 (559)
T ss_pred CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc---CCCCEE
Confidence 6666666666666511 2222222 368999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
+|||||+++|+|+-..+++....+. .+..+++.||++..+.-+- .++.++.
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~----------~~ktvl~itHrl~~~~~~D----~I~vld~ 529 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELA----------KQKTVLVITHRLEDAADAD----RIVVLDN 529 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHH----------hCCeEEEEEcChHHHhcCC----EEEEecC
Confidence 9999999999999777665433322 2367888899988876652 5566664
No 212
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.57 E-value=9.8e-16 Score=127.68 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=77.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCeEEeeeCCccccc----ccccccccC--------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPARTYTLNPKAVSV----IELYGVLNP-------------------- 104 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i~~~~~~~~~~~~----~~l~g~~~~-------------------- 104 (233)
+|+.++|+||||||||||+++|+|.. .+..|.+.+.+.+....+. ...++++.|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 44459999999999999999999984 5666666544322111000 000111111
Q ss_pred -----------------------------------CCC-cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 105 -----------------------------------ETR-DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 105 -----------------------------------~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
... .+|+|..+++ .++++.. .+|++++||||++++|..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl--~la~al~---~~p~llllDEPt~~LD~~~ 179 (243)
T TIGR01978 105 RRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN--EILQMAL---LEPKLAILDEIDSGLDIDA 179 (243)
T ss_pred hhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH--HHHHHHh---cCCCEEEecCCcccCCHHH
Confidence 111 2555666666 4444333 4899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
...+.+..+.+.. .| ..+++.+||+..+..
T Consensus 180 ~~~l~~~l~~~~~-~~--------~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 180 LKIVAEGINRLRE-PD--------RSFLIITHYQRLLNY 209 (243)
T ss_pred HHHHHHHHHHHHH-CC--------cEEEEEEecHHHHHh
Confidence 8888776554432 22 577888888776543
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.56 E-value=7.5e-16 Score=141.27 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=86.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+..|.+.+.+.+....+ ....+|+
T Consensus 19 ~l~~is~~i~~Ge~---------------~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 19 ALSGAALNVYPGRV---------------MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EeeeeeEEEcCCeE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 56677777765554 9999999999999999999999887777765432211000 0001111
Q ss_pred ccC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 102 LNP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 102 ~~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
+.| ....+|+|..+++ .++++.. .
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~ 158 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV--EIAKVLS---F 158 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH--HHHHHHh---c
Confidence 111 1234555666666 4444443 5
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|++++||||++++|+.....+++..+.+.-. | ..+++.+||+..+.
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~--------~tvii~sHd~~~~~ 205 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQ-G--------RGIVYISHRLKEIF 205 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHHHH
Confidence 89999999999999999988887765554322 3 46777777776554
No 214
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=2.2e-15 Score=119.76 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=84.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----------ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----------VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~----------~~~ 95 (233)
++++++|.+.++.+ ++|+||||||||||++++.+ ..|.+.+.+..+.. ...
T Consensus 10 ~l~~isl~i~~G~~---------------~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~ 70 (176)
T cd03238 10 NLQNLDVSIPLNVL---------------VVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQF 70 (176)
T ss_pred eecceEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHH
Confidence 45667777766555 99999999999999999853 24444433221100 001
Q ss_pred cccccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCC--ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEc
Q psy12735 96 IELYGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKE--RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL 169 (233)
Q Consensus 96 ~~l~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~--~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~ 169 (233)
.+.++. .+.....++.|..+++ .+++... .+ |+++++|||++++|.+....+++..+.+.- .|
T Consensus 71 l~~~~L~~~~~~~~~~~LSgGq~qrl--~laral~---~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g----- 139 (176)
T cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRV--KLASELF---SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LG----- 139 (176)
T ss_pred HHHcCCCccccCCCcCcCCHHHHHHH--HHHHHHh---hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-----
Confidence 112332 2334567899999998 5555544 47 999999999999999998887776554422 23
Q ss_pred cCcceEEEEeCCcCcc
Q psy12735 170 LAHCQLLFEVGDLQYA 185 (233)
Q Consensus 170 ~~~~~~i~et~dl~~~ 185 (233)
..+++.+|++..+
T Consensus 140 ---~tvIivSH~~~~~ 152 (176)
T cd03238 140 ---NTVILIEHNLDVL 152 (176)
T ss_pred ---CEEEEEeCCHHHH
Confidence 6788888888765
No 215
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.56 E-value=1e-15 Score=128.47 Aligned_cols=133 Identities=15% Similarity=0.223 Sum_probs=87.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------e--CCc---c--
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------L--NPK---A-- 92 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~--~~~---~-- 92 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+ + ++. .
T Consensus 19 vl~~vs~~i~~Ge---------------~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 19 VLSDVSLELKPGK---------------ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEeEEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC
Confidence 4556666665544 5999999999999999999999888777654321 0 000 0
Q ss_pred ccccc------------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 93 VSVIE------------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 93 ~~~~~------------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
.+..+ .+|. .+.....+++|..+++ .++++.. .+|+++++|||++++|+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv--~laral~---~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 84 LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV--LLARALL---NRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred hhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCcCCCHHHHHH
Confidence 00000 0111 1222345677888887 5555544 5899999999999999999888
Q ss_pred HhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 152 VMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.+..+.+....+ ..+++.+||+..+.
T Consensus 159 l~~~L~~~~~~~g--------~tiiivsH~~~~i~ 185 (251)
T PRK09544 159 LYDLIDQLRRELD--------CAVLMVSHDLHLVM 185 (251)
T ss_pred HHHHHHHHHHhcC--------CEEEEEecCHHHHH
Confidence 7766554432223 57777788877653
No 216
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.56 E-value=1.8e-15 Score=141.23 Aligned_cols=126 Identities=21% Similarity=0.169 Sum_probs=88.2
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+.+|+.++|+|+||||||||+|+|+|.+.+..|.+.+++.+...++. .+.+++++|++..|++++.+|+.-
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC
Confidence 3455677799999999999999999999999999988887665543332 233555666555555555544411
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++.. .+|++++||||++++|.++-..+++
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall---~~~~iliLDEpts~LD~~t~~~i~~ 512 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL---KDPPILILDEATSALDVETEAKVKA 512 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCccCCCHHHHHHHHH
Confidence 2222222 4899999999999999999888876
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
....+. ++.++++.+|+++.+
T Consensus 513 ~l~~~~----------~~~tvIiitHr~~~~ 533 (588)
T PRK13657 513 ALDELM----------KGRTTFIIAHRLSTV 533 (588)
T ss_pred HHHHHh----------cCCEEEEEEecHHHH
Confidence 544321 236777778887654
No 217
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.3e-15 Score=128.82 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++ +.++|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ....++++
T Consensus 26 il~~vs~~i~~G---------------e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 26 LLHPLSLTFPAG---------------KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred EEeeeeeEEcCC---------------CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 456666666554 459999999999999999999999888777765443211000 00011111
Q ss_pred cC---------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NP---------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.| ....+++|..+++ .++++.. .+
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~laral~---~~ 165 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRA--WIAMLVA---QD 165 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHH--HHHHHHh---cC
Confidence 11 1123444555555 3333333 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|++++||||++++|+.+...+.+....+....| ..+++.+||+..+
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~--------~tiii~sH~~~~i 211 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERG--------LTVIAVLHDINMA 211 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHH
Confidence 999999999999999998887776555433223 5677777877655
No 218
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.56 E-value=1.6e-15 Score=127.61 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=83.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc----------------ccccccccccCCCC------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV----------------SVIELYGVLNPETR------ 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~----------------~~~~l~g~~~~~~~------ 107 (233)
.+|+.++|+|+||||||||+++++|.+.+..|.+.+.+.+.... .....++++.|...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~s 108 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMT 108 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCc
Confidence 34555999999999999999999999988888776654322100 00112343333322
Q ss_pred -------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHH
Q psy12735 108 -------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDAL 144 (233)
Q Consensus 108 -------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~ 144 (233)
.+++|..+++ .++++.. .+|+++++|||++++
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llllDEPt~~L 183 (257)
T PRK10619 109 VLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV--SIARALA---MEPEVLLFDEPTSAL 183 (257)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccC
Confidence 2333333333 2222222 489999999999999
Q ss_pred hHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 145 WIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 145 ~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+.+...+.+..+.+.. .| ..+++.+||+..+. ....|+.++
T Consensus 184 D~~~~~~l~~~l~~l~~-~g--------~tiiivsH~~~~~~-~~~d~i~~l 225 (257)
T PRK10619 184 DPELVGEVLRIMQQLAE-EG--------KTMVVVTHEMGFAR-HVSSHVIFL 225 (257)
T ss_pred CHHHHHHHHHHHHHHHh-cC--------CEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998888776554432 23 67888888887653 333455444
No 219
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=7.6e-16 Score=141.39 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh--cCCCeEEeeeCCccccc----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLNPKAVSV----IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~~~~~~~~~~~----~~l~ 99 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+ ..|.+.+.+.+....+. ...+
T Consensus 20 il~~isl~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 20 ALDNVSLKVRAGEI---------------VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred eecceeEEEeCCeE---------------EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 56777777766555 999999999999999999999875 56666553322110000 0001
Q ss_pred cccc--------------------------------------------------CCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 100 GVLN--------------------------------------------------PETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 100 g~~~--------------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
|++. .....+|+|..+++ .++++..
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv--~la~al~--- 159 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV--EIAKALN--- 159 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH--HHHHHHh---
Confidence 1111 11234566666666 5555444
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|++++||||++++|+.....+++....+... | ..+|+.+||+..+.
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~--------~tvi~~tH~~~~~~ 207 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAH-G--------IACIYISHKLNEVK 207 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCcHHHHH
Confidence 589999999999999999988887766554322 3 46677777776554
No 220
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.56 E-value=1.7e-15 Score=140.84 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=81.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR------ 119 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~------ 119 (233)
+++|+.++|+|||||||||++++|.|++++..|.+.+++.+.+.++.. +.+++++|++..|++++.+|+..
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at 431 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDAT 431 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCC
Confidence 556667999999999999999999999999999999877776655543 44677778777777777766621
Q ss_pred -------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 120 -------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
.+|++. -.+|++++||||++++|.++-..+.+..
T Consensus 432 ~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal---l~~~~ILILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL---LRNPPILILDEATSALDTETEALIQDAL 508 (567)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH---hcCCCEEEEeccccccCHHhHHHHHHHH
Confidence 111111 1389999999999999999977776654
Q ss_pred c
Q psy12735 157 K 157 (233)
Q Consensus 157 ~ 157 (233)
.
T Consensus 509 ~ 509 (567)
T COG1132 509 K 509 (567)
T ss_pred H
Confidence 4
No 221
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=1.7e-15 Score=143.93 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=90.1
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH----
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR---- 119 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~---- 119 (233)
-.+.+|+.++|+|+||||||||+|+|+|.+.+.+|.+.+++.+.+.++. .+.++++.|++..|++++.+|+.-
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~ 557 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC
Confidence 3456677799999999999999999999999999999887776544432 233566666655555555555421
Q ss_pred ---------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 120 ---------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 120 ---------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
.++++.. ++|++++||||++++|.++...+++
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall---~~~~ililDEpts~LD~~~~~~i~~ 634 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV---GNPRILIFDEATSALDYESEALIMR 634 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH---hCCCEEEEECCCcCCCHHHHHHHHH
Confidence 2222221 4899999999999999999888877
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
..+.+. .+.++++.+|+++.+.
T Consensus 635 ~l~~~~----------~~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 635 NMREIC----------RGRTVIIIAHRLSTVR 656 (694)
T ss_pred HHHHHh----------CCCEEEEEeCChHHHH
Confidence 654331 1357777788876553
No 222
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.56 E-value=1.8e-15 Score=124.76 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=80.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC------------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP------------------------ 104 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~------------------------ 104 (233)
+.+|+.++|+||||||||||+++|+|.+.+.+|.+.+.+.+... ....++++.|
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 56788999999999999999999999988887776654432110 0001111111
Q ss_pred -----------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 105 -----------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 105 -----------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
....++.|..+++ .+++... .+|+++++|||++++|+.+...+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~laral~---~~p~llilDEP~~~LD~~~~~~l~~~ 155 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRV--LVARALA---TRPSVLLLDEPFTGLDMPTQELLTEL 155 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1123445555555 4444333 58999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+... | ..+++.+||+..+
T Consensus 156 l~~~~~~-~--------~tvii~sH~~~~~ 176 (223)
T TIGR03771 156 FIELAGA-G--------TAILMTTHDLAQA 176 (223)
T ss_pred HHHHHHc-C--------CEEEEEeCCHHHH
Confidence 5544322 3 5777878887754
No 223
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=3.4e-15 Score=138.24 Aligned_cols=124 Identities=18% Similarity=0.167 Sum_probs=83.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCc-------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWY------------- 110 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~------------- 110 (233)
-.+.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ..+.+++++|++..++
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 418 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN 418 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCC
Confidence 344566679999999999999999999999998888877655433222 1223444444444444
Q ss_pred --------------------------------------hhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 111 --------------------------------------DGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 111 --------------------------------------~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
+|..+++ .++++.. .+|++++||||++++|.++...+
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl--~lARall---~~~~ililDEpts~LD~~~~~~i 493 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI--ALARALY---GDPKLVVLDEPNSNLDEEGEQAL 493 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH--HHHHHHh---cCCCEEEEeCCccccCHHHHHHH
Confidence 4444444 3333322 48999999999999999998887
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
.+..+.+... +..+++.+|+++.
T Consensus 494 ~~~l~~~~~~---------~~tvi~ith~~~~ 516 (544)
T TIGR01842 494 ANAIKALKAR---------GITVVVITHRPSL 516 (544)
T ss_pred HHHHHHHhhC---------CCEEEEEeCCHHH
Confidence 7654433211 2567777888753
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.56 E-value=1.2e-15 Score=128.13 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=85.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC-----Cccccc-----
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN-----PKAVSV----- 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~-----~~~~~~----- 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+ ....+.
T Consensus 18 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 18 GCRDVSFDLYPGE---------------VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeecceEEEeCCc---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4566777766555 499999999999999999999998888877765432 111110
Q ss_pred --ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHh
Q psy12735 96 --IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVN 122 (233)
Q Consensus 96 --~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~ 122 (233)
...++++.|.. ..+++|..+++ .++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv--~la 160 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL--QIA 160 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH--HHH
Confidence 01123332221 12233333333 222
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++.. .+|+++++|||++++|+.+...+++....+....+ ..+|+.+|++..+..
T Consensus 161 ral~---~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~--------~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 161 RNLV---TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG--------LAVIIVTHDLGVARL 214 (253)
T ss_pred HHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH
Confidence 2222 48999999999999999998887776544332223 677888888776643
No 225
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.56 E-value=6.8e-16 Score=129.82 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+++..|.+.+.+.+...... ....+++
T Consensus 16 il~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 16 IVDGVDVTAPPGS---------------LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred EEeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 4566667665554 599999999999999999999998888877664433211110 1112232
Q ss_pred cCCC---------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 NPET---------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+.. ..++.|..+++ .++++.. .+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl--~la~al~---~~ 155 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV--HVARALA---QE 155 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHHHHh---cC
Confidence 2221 12233333333 2222222 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|++++||||++++|......+.+..+.+... | ..+++.+||+..+ +....|+.++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tiii~sH~~~~~-~~~~d~i~~l 210 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELAAT-G--------VTVVAALHDLNLA-ASYCDHVVVL 210 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHHHH-HHhCCEEEEE
Confidence 9999999999999999988877765554322 3 5677778887765 2233444333
No 226
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=1.6e-15 Score=128.22 Aligned_cols=125 Identities=11% Similarity=0.092 Sum_probs=81.6
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee------CC---cccccccc--------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL------NP---KAVSVIEL-------------------- 98 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~------~~---~~~~~~~l-------------------- 98 (233)
.+.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+. .+ ...+..+.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34566679999999999999999999999887776654321 10 00010000
Q ss_pred -----cc---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEcc
Q psy12735 99 -----YG---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170 (233)
Q Consensus 99 -----~g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~ 170 (233)
++ ..+.....+++|..+++ .++++.. .+|+++++|||++++|+.....+++....+... |
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv--~Laral~---~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g------ 193 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKL--GFSINIT---VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-N------ 193 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHH--HHHHHHh---hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-C------
Confidence 01 01122345677888887 4554443 589999999999999999877776654443222 2
Q ss_pred CcceEEEEeCCcCccC
Q psy12735 171 AHCQLLFEVGDLQYAS 186 (233)
Q Consensus 171 ~~~~~i~et~dl~~~s 186 (233)
..+++.+|++..+.
T Consensus 194 --~tiIiisH~~~~i~ 207 (264)
T PRK13546 194 --KTIFFVSHNLGQVR 207 (264)
T ss_pred --CEEEEEcCCHHHHH
Confidence 57777777777653
No 227
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.55 E-value=2.2e-15 Score=140.29 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=86.2
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+|+||||||||+|+|+|.+.+..|.+.+++.+....+ ..+.+++++|++..|++++.+|+.-
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~ 441 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDA 441 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCC
Confidence 34566679999999999999999999999999898887765543322 2234566666655555555544421
Q ss_pred --------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 120 --------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 120 --------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.++++.. .+|++++||||++++|.++...+++.
T Consensus 442 ~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~---~~~~ililDEpts~lD~~~~~~i~~~ 518 (576)
T TIGR02204 442 TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL---KDAPILLLDEATSALDAESEQLVQQA 518 (576)
T ss_pred CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH---hCCCeEEEeCcccccCHHHHHHHHHH
Confidence 2222221 38999999999999999998777665
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+.+. . +..+|+.+|++..+
T Consensus 519 l~~~~-~---------~~t~IiitH~~~~~ 538 (576)
T TIGR02204 519 LETLM-K---------GRTTLIIAHRLATV 538 (576)
T ss_pred HHHHh-C---------CCEEEEEecchHHH
Confidence 44321 1 35777778887555
No 228
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.55 E-value=1.4e-15 Score=139.11 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=87.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+..|.+.+.+......+ ....+|++
T Consensus 18 il~~vsl~i~~Ge~---------------~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 18 TLQLPSLTLNAGDS---------------WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred ecccceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 56777777766655 9999999999999999999998887777654322110000 00001111
Q ss_pred -----------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 103 -----------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 103 -----------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
+.....+|+|..+++ .++++.. .+|+++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~ll 157 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKT--LLCQALM---SEPDLL 157 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHH--HHHHHHH---cCCCEE
Confidence 122235566777776 4544443 589999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+||||++++|++....+.+..+.+... | ..+|+.+||+..+.
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~-g--------~tvii~tH~~~~~~ 199 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQS-G--------ITLVLVLNRFDEIP 199 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhc-C--------CeEEEEeCCHHHHH
Confidence 999999999999998888776655432 3 45666666665543
No 229
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.55 E-value=9.9e-16 Score=128.14 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=84.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++. .++|+|+||||||||+++|+|.+.+. .|.+.+.+.+.... ..
T Consensus 16 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 16 ALKNINLDIPKNQ---------------VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred eecceeEEECCCC---------------EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 4566777765555 59999999999999999999999876 77766544322100 00
Q ss_pred ccccccccCC---------------------------------------------------CCcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|. ....++|..+++ .++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~lara 158 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL--CIARA 158 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH--HHHHH
Confidence 1112222221 233455555555 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.. .+|+++++|||++++|+.....+++..+.+.. ...+++.+||+..+
T Consensus 159 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----------~~tiiivsH~~~~~ 206 (247)
T TIGR00972 159 LA---VEPEVLLLDEPTSALDPIATGKIEELIQELKK----------KYTIVIVTHNMQQA 206 (247)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----------cCeEEEEecCHHHH
Confidence 33 48999999999999999998887766544321 14778888888755
No 230
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=3.4e-15 Score=138.95 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=83.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCc----------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRD---------------- 108 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~---------------- 108 (233)
.+.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ..+.++++.|++..
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~ 416 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCC
Confidence 45567779999999999999999999999999888877654432221 11223344443333
Q ss_pred -----------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 109 -----------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 109 -----------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
.++|..+++ .++++.. .+|++++||||++++|.++...++
T Consensus 417 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi--~lARall---~~~~illlDEpts~LD~~~~~~i~ 491 (569)
T PRK10789 417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI--SIARALL---LNAEILILDDALSAVDGRTEHQIL 491 (569)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH--HHHHHHh---cCCCEEEEECccccCCHHHHHHHH
Confidence 444555555 3333332 489999999999999999988887
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+..+.+. . +.++++.+|+++.+
T Consensus 492 ~~l~~~~-~---------~~tii~itH~~~~~ 513 (569)
T PRK10789 492 HNLRQWG-E---------GRTVIISAHRLSAL 513 (569)
T ss_pred HHHHHHh-C---------CCEEEEEecchhHH
Confidence 6654321 1 25677777777544
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.2e-15 Score=139.55 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=86.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....+++
T Consensus 13 il~~vs~~i~~Ge~---------------~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 13 ALDNVNLKVRPHSI---------------HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred eeeeeeEEEcCCcE---------------EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 56677777766555 9999999999999999999999887777765443211000 0001111
Q ss_pred ccC--------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 102 LNP--------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 102 ~~~--------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+.| ....+|+|..+++ .++++.. .+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lA~al~---~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMI--EIAKAFS---YN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH--HHHHHHH---hC
Confidence 111 1224555666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
|++++||||++++|+.....+.+..+.+.-. | ..+++.+||+..+.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g--------~tvii~tH~~~~~~ 198 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-G--------CGIVYISHKMEEIF 198 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEecCHHHHH
Confidence 9999999999999999988887765554322 2 46677777776553
No 232
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.7e-15 Score=127.07 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=87.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|... +..|.+.+.+.+.... ..
T Consensus 21 il~~is~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 21 ALHDISLEFEQNQV---------------TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred eecceeEEEeCCCE---------------EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 56777777765554 99999999999999999999864 3566665544321100 00
Q ss_pred ccccccccCC---------------------------------------------------CCcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|. ...+++|..+++ .++++
T Consensus 86 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~lara 163 (253)
T PRK14242 86 RRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL--CIARA 163 (253)
T ss_pred hhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH--HHHHH
Confidence 1112222222 123444555544 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|++++||||++++|+.+...+.+..+.+. . + ..+++.+||+..+.. ...|+.++
T Consensus 164 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~--------~tvii~tH~~~~~~~-~~d~v~~l 221 (253)
T PRK14242 164 LA---VEPEVLLMDEPASALDPIATQKIEELIHELK-A-R--------YTIIIVTHNMQQAAR-VSDVTAFF 221 (253)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEEecHHHHHH-hCCEEEEE
Confidence 32 4899999999999999999888877655442 1 2 577888888876532 33444444
No 233
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.6e-15 Score=139.39 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|...+..|.+.+.+.+....+. ...+|+
T Consensus 20 il~~vs~~i~~Ge~---------------~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 20 ALKSVNLTVYPGEI---------------HALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EeeeeeEEEcCCcE---------------EEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 56777888766665 99999999999999999999988777776554322111000 000111
Q ss_pred ccC------------------------------------------------------CCCcCchhHHHHHHHHHhcCCCC
Q psy12735 102 LNP------------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 102 ~~~------------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~ 127 (233)
+.| ....+|+|..+++ .++++..
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv--~ia~al~- 161 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML--EIAKTLM- 161 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH--HHHHHHh-
Confidence 111 1224555666666 4444443
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|++++||||++++|+.....+++..+.+.-. | ..+++.+||+..+.
T Consensus 162 --~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g--------~tiiivsHd~~~~~ 209 (510)
T PRK09700 162 --LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-G--------TAIVYISHKLAEIR 209 (510)
T ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHHHHH
Confidence 589999999999999999998888766655322 3 56777788877664
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.1e-15 Score=141.61 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=92.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC----------cccc-
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP----------KAVS- 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~----------~~~~- 94 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+... ....
T Consensus 31 ~l~~is~~v~~Ge---------------~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 95 (623)
T PRK10261 31 AVRNLSFSLQRGE---------------TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSA 95 (623)
T ss_pred EEEeeEEEECCCC---------------EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCH
Confidence 5566677765554 5999999999999999999999877666554322100 0000
Q ss_pred -----c-ccccccc-----------------------------------------------------cCCCCcCchhHHH
Q psy12735 95 -----V-IELYGVL-----------------------------------------------------NPETRDWYDGLLS 115 (233)
Q Consensus 95 -----~-~~l~g~~-----------------------------------------------------~~~~~~~~~gi~~ 115 (233)
. ..-+|++ +...+.+|+|+.+
T Consensus 96 ~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~Q 175 (623)
T PRK10261 96 AQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQ 175 (623)
T ss_pred HHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHH
Confidence 0 0001211 1223456667777
Q ss_pred HHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 116 NIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
++ .++++.. .+|+++++|||++++|+.....+++..+.+....| ..+|+.+||+..+.- ...|..+
T Consensus 176 Rv--~iA~AL~---~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g--------~tvi~itHdl~~~~~-~adri~v 241 (623)
T PRK10261 176 RV--MIAMALS---CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS--------MGVIFITHDMGVVAE-IADRVLV 241 (623)
T ss_pred HH--HHHHHHh---CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC--------CEEEEEcCCHHHHHH-hCCEEEE
Confidence 66 4444444 58999999999999999998888877666544333 677888888776642 2345544
Q ss_pred EE
Q psy12735 196 VY 197 (233)
Q Consensus 196 v~ 197 (233)
++
T Consensus 242 l~ 243 (623)
T PRK10261 242 MY 243 (623)
T ss_pred ee
Confidence 44
No 235
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-15 Score=127.09 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=87.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~~~~~~-----~~~ 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+. .|.+.+.+.+... ...
T Consensus 22 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 22 ALNNINIKILKNS---------------ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred eecceeeEEcCCC---------------EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 4666777766555 49999999999999999999998753 5666654432110 001
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ..+++|..+++ .+++.
T Consensus 87 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv--~lara 164 (254)
T PRK14273 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL--CIART 164 (254)
T ss_pred hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH--HHHHH
Confidence 11223333222 22333444444 23332
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
.. .+|++++||||++++|......+++..+.+. . + ..+++.+|++..+.. ...|+.+
T Consensus 165 l~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~--------~tvii~sH~~~~~~~-~~d~i~~ 221 (254)
T PRK14273 165 LA---IEPNVILMDEPTSALDPISTGKIEELIINLK-E-S--------YTIIIVTHNMQQAGR-ISDRTAF 221 (254)
T ss_pred HH---cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-C--------CEEEEEeCCHHHHHH-hCCEEEE
Confidence 22 4899999999999999999988877665542 1 2 577888888876532 2344433
No 236
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-15 Score=128.18 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=81.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~ 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+. +..|.+.+.+.+... ...
T Consensus 28 il~~is~~i~~Ge---------------~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 28 AVKNVFCDIPRGK---------------VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEcceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 4666777766555 499999999999999999999876 356666554332110 001
Q ss_pred ccccccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCC
Q psy12735 96 IELYGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 96 ~~l~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~ 126 (233)
...++++.|.. ..+++|..+++ .++++..
T Consensus 93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl--~laral~ 170 (269)
T PRK14259 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL--CIARTIA 170 (269)
T ss_pred hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH--HHHHHHh
Confidence 11122222221 22344444444 3333332
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|+.....+.+....+. . + ..+++.+||+..+
T Consensus 171 ---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~--------~tiiivtH~~~~~ 216 (269)
T PRK14259 171 ---IEPEVILMDEPCSALDPISTLKIEETMHELK-K-N--------FTIVIVTHNMQQA 216 (269)
T ss_pred ---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C--------CEEEEEeCCHHHH
Confidence 4899999999999999999888777655432 1 2 4667777776654
No 237
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.54 E-value=2.6e-15 Score=125.11 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+. ...+++
T Consensus 17 ~l~~vs~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 17 ALNDLSLYVDPGEL---------------RVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EeeeeeEEEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 46667777766555 99999999999999999999988888877665433211110 011222
Q ss_pred ccCCC-------------------------------------------------------CcCchhHHHHHHHHHhcCCC
Q psy12735 102 LNPET-------------------------------------------------------RDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 102 ~~~~~-------------------------------------------------------~~~~~gi~~~~~~~~~~~~~ 126 (233)
+.+.. ...++|..+++ .++++..
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv--~laral~ 159 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL--EIGMLLM 159 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh
Confidence 22221 12333444443 2333322
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|+++++|||++++|+++...+++..+.+.. + ..+++.+|++..+. ....|+.++
T Consensus 160 ---~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~--------~tii~~sH~~~~~~-~~~d~i~~l 215 (242)
T TIGR03411 160 ---QDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K--------HSVVVVEHDMEFVR-SIADKVTVL 215 (242)
T ss_pred ---cCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C--------CEEEEEECCHHHHH-HhCCEEEEE
Confidence 48999999999999999998888776554321 2 57888888888653 333455444
No 238
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.54 E-value=5.3e-15 Score=121.47 Aligned_cols=131 Identities=24% Similarity=0.227 Sum_probs=83.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-------cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-------VIEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-------~~~l 98 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....
T Consensus 16 il~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 16 TLSNINIRIPTGQL---------------TMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred ceeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 56777777765554 9999999999999999999999887777766443221100 1112
Q ss_pred cccccCCC--------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 99 YGVLNPET--------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 99 ~g~~~~~~--------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
++++.|.. ..++.|..+++ .+++...
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv--~laral~-- 156 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI--CVARALY-- 156 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH--HHHHHHh--
Confidence 33333322 12333444443 2232222
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhh--ccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMD--DNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~--~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|+++++|||++++|+.....+++ ....+ ... +.++|+.+|++..+
T Consensus 157 -~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~--------~~tii~~sH~~~~~ 205 (218)
T cd03290 157 -QNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDD--------KRTLVLVTHKLQYL 205 (218)
T ss_pred -hCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcC--------CCEEEEEeCChHHH
Confidence 4899999999999999998877665 22221 111 26788888888765
No 239
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=3.3e-15 Score=137.92 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccccc-----
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAVSV----- 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~~~----- 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+....+.
T Consensus 24 ~l~~isl~i~~Ge---------------~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 88 (529)
T PRK15134 24 VVNDVSLQIEAGE---------------TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRG 88 (529)
T ss_pred eeeceEEEEeCCC---------------EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHH
Confidence 5677777776555 4999999999999999999999875 45665554332211100
Q ss_pred -c-cccccccCC-----------------------------------------------------CCcCchhHHHHHHHH
Q psy12735 96 -I-ELYGVLNPE-----------------------------------------------------TRDWYDGLLSNIFRA 120 (233)
Q Consensus 96 -~-~l~g~~~~~-----------------------------------------------------~~~~~~gi~~~~~~~ 120 (233)
. ..+|++.|. ...+|+|..+++ .
T Consensus 89 ~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv--~ 166 (529)
T PRK15134 89 VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV--M 166 (529)
T ss_pred HhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH--H
Confidence 0 112222222 234445555555 4
Q ss_pred HhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 121 VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 121 ~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
++++.. .+|++++||||++++|+.....+++..+.+....| ..+|+.|||+..+.
T Consensus 167 iAraL~---~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tvi~vtHd~~~~~ 221 (529)
T PRK15134 167 IAMALL---TRPELLIADEPTTALDVSVQAQILQLLRELQQELN--------MGLLFITHNLSIVR 221 (529)
T ss_pred HHHHHh---cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC--------CeEEEEcCcHHHHH
Confidence 444433 58999999999999999999888876665543323 57777788877663
No 240
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.54 E-value=9.1e-16 Score=139.13 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=88.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC------C---cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN------P---KAVSVI 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~------~---~~~~~~ 96 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.. + ...+..
T Consensus 39 IL~nVSfsI~~GE---------------ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~ 103 (549)
T PRK13545 39 ALNNISFEVPEGE---------------IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGI 103 (549)
T ss_pred EEeeeEEEEeCCC---------------EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHH
Confidence 4566666665554 599999999999999999999998888877653311 0 000100
Q ss_pred c-------------------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 97 E-------------------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 97 ~-------------------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
+ .+|. .+.....+++|..+++ .++++.. .+|++++||||++++|+..
T Consensus 104 EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV--aLArAL~---~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 104 ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL--GFAISVH---INPDILVIDEALSVGDQTF 178 (549)
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH--HHHHHHH---hCCCEEEEECCcccCCHHH
Confidence 0 0111 1233356788999888 5555554 5899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+++....+.- .| ..+++.+||+..+
T Consensus 179 r~~LlelL~el~~-~G--------~TIIIVSHdl~~i 206 (549)
T PRK13545 179 TKKCLDKMNEFKE-QG--------KTIFFISHSLSQV 206 (549)
T ss_pred HHHHHHHHHHHHh-CC--------CEEEEEECCHHHH
Confidence 8887776554321 22 5677777877655
No 241
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.4e-15 Score=139.55 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=86.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+....+ ....+|+
T Consensus 19 il~~isl~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 19 ALDDISFDCRAGQV---------------HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EEeeeeEEEeCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 56677777766554 9999999999999999999998887777765432211000 0001111
Q ss_pred ccC--------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 102 LNP--------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 102 ~~~--------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+.| ....+|+|..+++ .++++.. .+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~laral~---~~ 158 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV--EIAKALA---RN 158 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHH--HHHHHHH---hC
Confidence 111 1234556666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|++++||||++++|+.....+++..+.+... | ..+|+.+||+..+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g--------~tiiiitHd~~~~ 203 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAE-G--------RVILYVSHRMEEI 203 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHHHH
Confidence 9999999999999999998887766554322 3 5667777776655
No 242
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=4.1e-15 Score=122.25 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=87.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 19 ~l~~i~~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 19 VLKNISFSIKPGEK---------------VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred cccceEEEECCCCE---------------EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 56777777766555 9999999999999999999998888777665432211000 00111111
Q ss_pred cC--------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 103 NP--------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 103 ~~--------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.+ ....++.|..+++ .++++.. .+|
T Consensus 84 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~--~laral~---~~p 158 (221)
T cd03244 84 PQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL--CLARALL---RKS 158 (221)
T ss_pred CCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH--HHHHHHh---cCC
Confidence 11 2234555666666 4444443 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+++++|||++++|+.....+.+..+.+. . +..+++.+|++..+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~---------~~tii~~sh~~~~~~ 202 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF-K---------DCTVLTIAHRLDTII 202 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-C---------CCEEEEEeCCHHHHh
Confidence 9999999999999999888776655432 1 246788888887663
No 243
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.53 E-value=5.6e-15 Score=137.88 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=84.3
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcC--------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDW-------------- 109 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~-------------- 109 (233)
-.+++|+.++|+||||||||||+++|+|.+++..|.+.+.+.+....+ ..+.+++++|++..+
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence 345677779999999999999999999999998888877654432221 122344444444333
Q ss_pred -------------------------------------chhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 110 -------------------------------------YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 110 -------------------------------------~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
++|..+++ .++++.. .+|++++||||++++|.++...+
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl--~lARall---~~p~ililDEpts~LD~~~~~~i 510 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL--AIARAIL---KNAPILVLDEATSALDVETEARV 510 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEECCccCCCHHHHHHH
Confidence 44444444 3333332 48999999999999999998887
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+....+. . +..+++.+|+++.+
T Consensus 511 ~~~l~~~~-~---------~~tvI~isH~~~~~ 533 (585)
T TIGR01192 511 KNAIDALR-K---------NRTTFIIAHRLSTV 533 (585)
T ss_pred HHHHHHHh-C---------CCEEEEEEcChHHH
Confidence 76544321 1 25677777777555
No 244
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.53 E-value=1.2e-14 Score=126.15 Aligned_cols=125 Identities=24% Similarity=0.238 Sum_probs=90.2
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee----------------------eCCc-c----cccccc--
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT----------------------LNPK-A----VSVIEL-- 98 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~----------------------~~~~-~----~~~~~l-- 98 (233)
.++.|++++|||.|||||||+-.+|.+++... |.+.+.+ .+|- + .+..++
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 45667789999999999999999999988655 4443322 1220 0 000011
Q ss_pred -------------------------ccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 99 -------------------------YGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 99 -------------------------~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
.|. .+.-+++|++|..+++ +++++.. -+|+++++|||++++|..-.
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRI--AIARAli---LkP~~i~LDEPTSALD~SVQ 462 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRI--AIARALI---LKPELILLDEPTSALDRSVQ 462 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHH--HHHHHHh---cCCcEEEecCCchHhhHHHH
Confidence 111 1223579999999999 7777665 59999999999999999999
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.++++..+.+... |+...+|..|||..+.
T Consensus 463 aQvv~LLr~LQ~k--------~~LsYLFISHDL~Vvr 491 (534)
T COG4172 463 AQVLDLLRDLQQK--------HGLSYLFISHDLAVVR 491 (534)
T ss_pred HHHHHHHHHHHHH--------hCCeEEEEeccHHHHH
Confidence 9999887776544 4488999999998663
No 245
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.53 E-value=1.5e-15 Score=124.55 Aligned_cols=120 Identities=10% Similarity=-0.017 Sum_probs=75.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-EeeeC------C---ccccccccc-------c-------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-TYTLN------P---KAVSVIELY-------G------------- 100 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-~~~~~------~---~~~~~~~l~-------g------------- 100 (233)
+|+.++|+||||||||||+|+|+|.+.+..|.+. +.+.. + ...+..+.+ +
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445999999999999999999999988888875 32211 0 001111110 0
Q ss_pred -----cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceE
Q psy12735 101 -----VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL 175 (233)
Q Consensus 101 -----~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~ 175 (233)
..+.....++.|+.+++ .++++.. .+|+++++|||++++|......+.+...... .+ ..+
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv--~la~al~---~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~~---------~~i 156 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHL--AFAINLL---LPCRLYIADGKLYTGDNATQLRMQAALACQL-QQ---------KGL 156 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHH--HHHHHHh---cCCCEEEECCCCccCCHHHHHHHHHHHHHHh-hC---------CcE
Confidence 01111235667777777 5555444 5899999999999999888766655332111 11 246
Q ss_pred EEEeCCcCcc
Q psy12735 176 LFEVGDLQYA 185 (233)
Q Consensus 176 i~et~dl~~~ 185 (233)
++.+|++..+
T Consensus 157 i~vsH~~~~~ 166 (213)
T PRK15177 157 IVLTHNPRLI 166 (213)
T ss_pred EEEECCHHHH
Confidence 7777877654
No 246
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2e-15 Score=126.46 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcccc---ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAVS---VIE 97 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~~---~~~ 97 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+..... ...
T Consensus 18 ~l~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 18 VLDGVNLEIPDNT---------------ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eeecceeEEcCCC---------------EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4566677765555 5999999999999999999999863 4566554432211000 001
Q ss_pred ccccccC-----------------------------------------------------CCCcCchhHHHHHHHHHhcC
Q psy12735 98 LYGVLNP-----------------------------------------------------ETRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 98 l~g~~~~-----------------------------------------------------~~~~~~~gi~~~~~~~~~~~ 124 (233)
.+|++.| ....+++|..+++ .++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~lara 160 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL--CIARA 160 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH--HHHHH
Confidence 1122211 1234455555555 44443
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.. .+|+++++|||++++|+.....+.+..+.+. . + ..+++.+||+..+
T Consensus 161 l~---~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tiii~sH~~~~~ 208 (250)
T PRK14247 161 LA---FQPEVLLADEPTANLDPENTAKIESLFLELK-K-D--------MTIVLVTHFPQQA 208 (250)
T ss_pred Hh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C--------CEEEEEeCCHHHH
Confidence 33 4899999999999999999888777655432 1 2 5677888887754
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.53 E-value=7.9e-15 Score=124.61 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=90.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+|+||||||||+++|+|.+. ..|.+.+.+.+....+. ...++++
T Consensus 19 ~l~~isl~I~~Ge~---------------~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 19 VLENISFSISPGQR---------------VGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred ceeceEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 56777777766555 99999999999999999999987 66777665543321111 1112222
Q ss_pred cCCCCc--------------------------------------------------CchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 103 NPETRD--------------------------------------------------WYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 103 ~~~~~~--------------------------------------------------~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.|.... ++.|..+++ .++++.. .+|
T Consensus 83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl--~LaRall---~~p 157 (275)
T cd03289 83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM--CLARSVL---SKA 157 (275)
T ss_pred CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH--HHHHHHh---cCC
Confidence 222221 555555555 3443333 489
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++++|||++++|+.....+.+..+.+. .+..+++.+|++..+. . ..|+.++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~----------~~~tii~isH~~~~i~-~-~dri~vl 209 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF----------ADCTVILSEHRIEAML-E-CQRFLVI 209 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc----------CCCEEEEEECCHHHHH-h-CCEEEEe
Confidence 9999999999999998877666544321 1368888889987653 2 4555444
No 248
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.53 E-value=5.6e-15 Score=125.17 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=84.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~ 99 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+.+|.+.+.+.+....+ ....+
T Consensus 27 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i 91 (268)
T PRK10419 27 VLNNVSLSLKSGE---------------TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDI 91 (268)
T ss_pred eEeceeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcE
Confidence 4566777765554 59999999999999999999999888887776554322111 01122
Q ss_pred ccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 100 GVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 100 g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
+++.|.. ..++.|..+++ .++++..
T Consensus 92 ~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl--~laral~-- 167 (268)
T PRK10419 92 QMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV--CLARALA-- 167 (268)
T ss_pred EEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH--HHHHHHh--
Confidence 3332221 12333444444 2333222
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+|++++||||++++|.+....+.+....+.-..+ ..+|+.+|++..+
T Consensus 168 -~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~--------~tiiivsH~~~~i 215 (268)
T PRK10419 168 -VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG--------TACLFITHDLRLV 215 (268)
T ss_pred -cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC--------cEEEEEECCHHHH
Confidence 48999999999999999988777766554433222 5667777776644
No 249
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.53 E-value=6.3e-15 Score=136.76 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=82.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCC----------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETR---------------- 107 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~---------------- 107 (233)
-.+.+|+.++|+|||||||||++++|+|.+.+..|.+.+.+.+.+..+. .+.++++.|++.
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 442 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASL 442 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhH
Confidence 3456677799999999999999999999999999988876655433221 122333333332
Q ss_pred ---------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc-cc
Q psy12735 108 ---------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK-IL 159 (233)
Q Consensus 108 ---------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~-~l 159 (233)
..|+|..+++ .++++.. .+|++++||||++++|.++...+.+... .+
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl--alaRall---~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL--ALICAWL---EDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 2455566655 4444333 5899999999999999999877765421 11
Q ss_pred cccCceEEEccCcceEEEEeCCcC
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
... +.++++.+|+++
T Consensus 518 ~~~---------~~tiiiisH~~~ 532 (555)
T TIGR01194 518 KRQ---------GKTIIIISHDDQ 532 (555)
T ss_pred HhC---------CCEEEEEeccHH
Confidence 111 256677777764
No 250
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.53 E-value=5e-15 Score=125.74 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=84.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc--------CCCeEEeeeCCcccc---
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL--------GYPARTYTLNPKAVS--- 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~--------~~~i~~~~~~~~~~~--- 94 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+. .|.+.+.+.+.....
T Consensus 16 il~~vsl~i~~Ge---------------~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 16 ILRDLSLRIEPGR---------------VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred EEecceEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4556666665554 59999999999999999999998876 666655432211000
Q ss_pred cccccccccC---------------------------------------------------CCCcCchhHHHHHHHHHhc
Q psy12735 95 VIELYGVLNP---------------------------------------------------ETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 95 ~~~l~g~~~~---------------------------------------------------~~~~~~~gi~~~~~~~~~~ 123 (233)
.....+++.| .....++|..+++ .+++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv--~lar 158 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV--QFAR 158 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH--HHHH
Confidence 0000111111 1123445555555 3333
Q ss_pred CCCCCC--------CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 124 PLDPGS--------KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 124 ~~~~~~--------~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
... . .+|+++++|||++++|+.....+++..+.+....| ..+++.+||+..+
T Consensus 159 al~--~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~--------~tviiisH~~~~~ 218 (272)
T PRK13547 159 VLA--QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN--------LGVLAIVHDPNLA 218 (272)
T ss_pred HHh--ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEECCHHHH
Confidence 222 1 37999999999999999999888876655433323 5788888887755
No 251
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.2e-15 Score=135.30 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=91.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA------------- 92 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~------------- 92 (233)
++++.+|.+.++.+ ++|+|.||+|||||+|+|+|.+.+++|.+.+.+.....
T Consensus 23 AL~~v~l~v~~GEV---------------~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 23 ALDGVSLTVRPGEV---------------HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeccceeEEeCceE---------------EEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 57888898887776 99999999999999999999999999887764422100
Q ss_pred ----------ccccc-c-cccccC------------------------------CCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 93 ----------VSVIE-L-YGVLNP------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 93 ----------~~~~~-l-~g~~~~------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
++..+ + +|.... .-...+-|..|.+ +++++.. .
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V--eIArAl~---~ 162 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV--EIARALS---F 162 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH--HHHHHHh---c
Confidence 00000 0 011100 0012233334444 5555543 4
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGD 181 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~d 181 (233)
+.++++|||||+++...-...+++..+.+.-.+..+|.++|.+.-+++++|
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~D 213 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIAD 213 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcC
Confidence 889999999999998888888888777777666666666766666665544
No 252
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2e-15 Score=127.26 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=86.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc--c---cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA--V---SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~--~---~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+. +..|.+.+.+.+... . ..
T Consensus 28 il~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 28 ALKNINLDIAKNQ---------------VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EeeceeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 4666677765555 599999999999999999999875 356666554432210 0 00
Q ss_pred ccccccccCC---------------------------------------------------CCcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|. ...+++|..+++ .++++
T Consensus 93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~lara 170 (260)
T PRK10744 93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL--CIARG 170 (260)
T ss_pred hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH--HHHHH
Confidence 1112222222 123344444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|++++||||++++|..+...+++..+.+. . + ..+++.+|++..+.. +..|+.++
T Consensus 171 l~---~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~--------~tiii~sH~~~~~~~-~~d~i~~l 228 (260)
T PRK10744 171 IA---IRPEVLLLDEPCSALDPISTGRIEELITELK-Q-D--------YTVVIVTHNMQQAAR-CSDYTAFM 228 (260)
T ss_pred HH---CCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEeCCHHHHHH-hCCEEEEE
Confidence 32 4899999999999999999888777655442 1 2 467788888775532 33444333
No 253
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.52 E-value=2e-14 Score=133.14 Aligned_cols=124 Identities=15% Similarity=0.015 Sum_probs=82.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCC-----------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPET----------------- 106 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~----------------- 106 (233)
-.+++|+.++|+||||||||||+++|+|.+++..|.+.+++.+.+..+ ..+.++++.|++
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 423 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPA 423 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHH
Confidence 345677789999999999999999999999998888877654432111 111122222222
Q ss_pred ------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 107 ------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 107 ------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
..+++|..+++ .++++.. .+|++++||||++++|.++-..+.+........
T Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl--~lARal~---~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~ 498 (547)
T PRK10522 424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL--ALLLALA---EERDILLLDEWAADQDPHFRREFYQVLLPLLQE 498 (547)
T ss_pred HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 24566666666 4544443 589999999999999999987766543321111
Q ss_pred CceEEEccCcceEEEEeCCcC
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~ 183 (233)
. +.++++.+|+++
T Consensus 499 ~--------~~tvi~itH~~~ 511 (547)
T PRK10522 499 M--------GKTIFAISHDDH 511 (547)
T ss_pred C--------CCEEEEEEechH
Confidence 1 256777777764
No 254
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.7e-15 Score=124.55 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=78.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----ccccccccCCC--------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNPET-------------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~~~~~~-------------------- 106 (233)
+|+.++|+||||||||||+++|+|.+++..|.+.+.+.+...... ..-++++.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 445599999999999999999999998888877665433211110 00112222211
Q ss_pred ------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHH
Q psy12735 107 ------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDAL 144 (233)
Q Consensus 107 ------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~ 144 (233)
..+++|..+++ .++++.. .+|+++++|||++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~la~al~---~~p~llllDEPt~~L 184 (255)
T PRK11300 110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL--EIARCMV---TQPEILMLDEPAAGL 184 (255)
T ss_pred cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCccCC
Confidence 12333444444 3333332 489999999999999
Q ss_pred hHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 145 WIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 145 ~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
|+.+...+.+....+.-..| ..+++.+|++..+.
T Consensus 185 D~~~~~~l~~~L~~~~~~~~--------~tii~~sH~~~~~~ 218 (255)
T PRK11300 185 NPKETKELDELIAELRNEHN--------VTVLLIEHDMKLVM 218 (255)
T ss_pred CHHHHHHHHHHHHHHHhhcC--------CEEEEEeCCHHHHH
Confidence 99998888776554432223 67888888887653
No 255
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.52 E-value=4.9e-15 Score=122.26 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=89.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 29 ~l~~is~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 29 VLQDVSFTLHPGE---------------VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred cccceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 5666777765554 59999999999999999999998877776654332110000 00001111
Q ss_pred ---------------------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 103 ---------------------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 103 ---------------------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+.....+++|..+++ .+++... .+
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv--~laral~---~~ 168 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV--AIARALI---RN 168 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH--HHHHHHh---cC
Confidence 111234566666666 4444443 58
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
|+++++|||++++|++....+.+..+.+. . +..+++.+||+..+.- ..|+.++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~-~---------~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWP-E---------RRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-C---------CCEEEEEECCHHHHHh--CCEEEEe
Confidence 99999999999999999888776654432 1 2578888888887732 3444443
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.8e-15 Score=136.22 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----cccccccccCC------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE------------------ 105 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~~~~~------------------ 105 (233)
.+..|+.++|+||||||||||+|+|+|..++.+|.+.+.+.+....+ ...-+|++.|.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 34556669999999999999999999998887777766443211000 00112222221
Q ss_pred ------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCH
Q psy12735 106 ------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDA 143 (233)
Q Consensus 106 ------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~ 143 (233)
...+|+|..+++ .++++.. .+|++++||||+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~lAral~---~~p~lLlLDEPt~~ 439 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV--LISKWLC---CCPEVIIFDEPTRG 439 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH--HHHHHHh---cCCCEEEECCCCCC
Confidence 123344444444 3333332 48999999999999
Q ss_pred HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 144 LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 144 ~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|+.....+++..+.+... | ..+|+.+||+..+.
T Consensus 440 LD~~~~~~l~~~l~~l~~~-g--------~tvi~vsHd~~~~~ 473 (510)
T PRK09700 440 IDVGAKAEIYKVMRQLADD-G--------KVILMVSSELPEII 473 (510)
T ss_pred cCHHHHHHHHHHHHHHHHC-C--------CEEEEEcCCHHHHH
Confidence 9999988888766555422 3 56777777776553
No 257
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.52 E-value=8.5e-15 Score=127.33 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=75.9
Q ss_pred EEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccCC------------------------------
Q psy12735 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNPE------------------------------ 105 (233)
Q Consensus 57 lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~~------------------------------ 105 (233)
|+||||||||||+++|+|.+.+.+|.+.+.+.+..... ...-+|++.|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999888887766443221100 01112222222
Q ss_pred -----------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEE
Q psy12735 106 -----------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIR 168 (233)
Q Consensus 106 -----------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~ 168 (233)
...+|+|..+++ .++++.. .+|++++||||++++|......+.+..+.+....|
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRv--alaraL~---~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g---- 151 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRV--ALARALV---FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG---- 151 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----
Confidence 234455555555 4444433 48999999999999999998888776655443323
Q ss_pred ccCcceEEEEeCCcCcc
Q psy12735 169 LLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~ 185 (233)
..+++.|||+..+
T Consensus 152 ----~tiiivTHd~~e~ 164 (325)
T TIGR01187 152 ----ITFVFVTHDQEEA 164 (325)
T ss_pred ----CEEEEEeCCHHHH
Confidence 5677777777654
No 258
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.8e-15 Score=126.14 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc--c---ccccccccccCCC-------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA--V---SVIELYGVLNPET------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~--~---~~~~l~g~~~~~~------------- 106 (233)
.+|+.++|+||||||||||+++|+|... +..|.+.+.+.+... . .....++++.|..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 124 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH 124 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHH
Confidence 3455599999999999999999999753 456666554332210 0 0111123332221
Q ss_pred --------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 107 --------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 107 --------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl--~laral~---~~p~lllLDEPt~~LD~~~ 199 (268)
T PRK14248 125 ALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL--CIARTLA---MKPAVLLLDEPASALDPIS 199 (268)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH--HHHHHHh---CCCCEEEEcCCCcccCHHH
Confidence 22334444444 3333222 4899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
...+.+..+.+.. + ..+++.+||+..+.
T Consensus 200 ~~~l~~~l~~~~~--~--------~tiii~tH~~~~~~ 227 (268)
T PRK14248 200 NAKIEELITELKE--E--------YSIIIVTHNMQQAL 227 (268)
T ss_pred HHHHHHHHHHHhc--C--------CEEEEEEeCHHHHH
Confidence 8888776554421 2 46888888887653
No 259
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.6e-15 Score=125.11 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=82.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCc--cc---cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPK--AV---SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~--~~---~~ 95 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+ ..|.+.+.+.+.. .. ..
T Consensus 19 ~l~~is~~i~~Ge~---------------~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 19 VIKGVDLKIPQNGV---------------FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eeecceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 56667777665554 999999999999999999999875 3666665443221 00 01
Q ss_pred ccccccccCCC-----------------------------------------------------CcCchhHHHHHHHHHh
Q psy12735 96 IELYGVLNPET-----------------------------------------------------RDWYDGLLSNIFRAVN 122 (233)
Q Consensus 96 ~~l~g~~~~~~-----------------------------------------------------~~~~~gi~~~~~~~~~ 122 (233)
..-++++.|.. ..+++|..+++ .++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~la 161 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL--VIA 161 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH--HHH
Confidence 11122222221 12333444444 333
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++.. .+|+++++|||++++|+.....+.+....+. . + ..+++.+||+..+
T Consensus 162 ral~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tiii~sH~~~~~ 211 (253)
T PRK14267 162 RALA---MKPKILLMDEPTANIDPVGTAKIEELLFELK-K-E--------YTIVLVTHSPAQA 211 (253)
T ss_pred HHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-C--------CEEEEEECCHHHH
Confidence 3322 4899999999999999999888777655432 1 2 5788888888765
No 260
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.52 E-value=4.6e-15 Score=124.78 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=78.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-----------EeeeCCcccc---cc---c--------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-----------TYTLNPKAVS---VI---E-------------- 97 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-----------~~~~~~~~~~---~~---~-------------- 97 (233)
+.+|+.++|+||||||||||+++|+|.+++..|.+. +.+.+..... .. .
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKA 102 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchH
Confidence 567778999999999999999999999998888874 2222111000 00 0
Q ss_pred -----------------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 98 -----------------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 98 -----------------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
.+|. .+.....++.|..+++ .+++... .+|++++||||++++|+.....
T Consensus 103 ~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv--~laral~---~~p~illlDEPts~LD~~~~~~ 177 (255)
T cd03236 103 VKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV--AIAAALA---RDADFYFFDEPSSYLDIKQRLN 177 (255)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEECCCCCCCHHHHHH
Confidence 0000 1111224455666665 4444333 4899999999999999998877
Q ss_pred HhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 152 VMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+..+.+... + ..+++.+||+..+
T Consensus 178 l~~~l~~l~~~-~--------~tIIiiSHd~~~~ 202 (255)
T cd03236 178 AARLIRELAED-D--------NYVLVVEHDLAVL 202 (255)
T ss_pred HHHHHHHHHhc-C--------CEEEEEECCHHHH
Confidence 76655443322 2 4677777777654
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.52 E-value=2.5e-15 Score=125.85 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=81.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
.+++++|.+.++. .++|+||||||||||+++|+|.+.. .|.+.+.+.+....+. ....+++
T Consensus 11 ~l~~vsl~i~~Ge---------------i~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 11 RLGPLSAEVRAGE---------------ILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred eecceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 4566677665555 4999999999999999999998754 5655543322110000 0011111
Q ss_pred c----------------------------------------------CCCCcCchhHHHHHHHHHhcCCCCC----CCCc
Q psy12735 103 N----------------------------------------------PETRDWYDGLLSNIFRAVNKPLDPG----SKER 132 (233)
Q Consensus 103 ~----------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~----~~~~ 132 (233)
. .....+++|..+++ .++++.... ..+|
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv--~la~al~~~~~~~~p~p 152 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRV--RLAAVVLQVWPDINPAG 152 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH--HHHHHHhccccccCCCC
Confidence 1 11234455666666 333333200 0156
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++++||||++++|+.....+.+..+.+... + ..+++.+||+..+
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~--------~tvi~~sH~~~~~ 196 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQ-G--------IAVVMSSHDLNHT 196 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhC-C--------CEEEEEecCHHHH
Confidence 999999999999999988877665544322 2 5777888887755
No 262
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.52 E-value=7.3e-15 Score=123.96 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=87.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeCCccc--------c
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLNPKAV--------S 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~~~~~--------~ 94 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|.+.+. +|.+.+.+.+.... .
T Consensus 19 il~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 19 ALHAVDLNIHHGEM---------------VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEecceEEEcCCcE---------------EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 56667777665554 9999999999999999999998764 35555444322110 0
Q ss_pred cccccccccCCC-------------------------------------------------------CcCchhHHHHHHH
Q psy12735 95 VIELYGVLNPET-------------------------------------------------------RDWYDGLLSNIFR 119 (233)
Q Consensus 95 ~~~l~g~~~~~~-------------------------------------------------------~~~~~gi~~~~~~ 119 (233)
....++++.+.. ..+++|..+++
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-- 161 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV-- 161 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH--
Confidence 001122222221 22333444444
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.++++.. .+|+++++|||++++|.+....+.+..+.+....| ..+|+.+||+..+.. ...|+.++
T Consensus 162 ~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g--------~tvii~tH~~~~~~~-~~d~i~~l 226 (262)
T PRK09984 162 AIARALM---QQAKVILADEPIASLDPESARIVMDTLRDINQNDG--------ITVVVTLHQVDYALR-YCERIVAL 226 (262)
T ss_pred HHHHHHh---cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 3333222 48999999999999999998888776665543323 678888888876533 22444444
No 263
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.6e-15 Score=135.75 Aligned_cols=125 Identities=6% Similarity=0.040 Sum_probs=82.6
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----ccccccc---------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVL--------------------- 102 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~~--------------------- 102 (233)
.+..|+.++|+||||||||||+++|+|...+.+|.+.+.+.+....+. ..-++++
T Consensus 270 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 270 DLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 345566799999999999999999999988877777664322110000 0001111
Q ss_pred ------------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 103 ------------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 103 ------------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
+.....+|+|..+++ .+++... .+|++++||||++++|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~---~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV--IIGRWLL---TQPEILMLDEPTRGIDV 424 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH--HHHHHHh---cCCCEEEEcCCCcccCh
Confidence 112235566777766 4444443 58999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+...+++....+...+ ..+++.+||+..+.
T Consensus 425 ~~~~~~~~~l~~l~~~~---------~tvi~vsHd~~~~~ 455 (491)
T PRK10982 425 GAKFEIYQLIAELAKKD---------KGIIIISSEMPELL 455 (491)
T ss_pred hHHHHHHHHHHHHHHCC---------CEEEEECCChHHHH
Confidence 99988877655543333 46777777776653
No 264
>PRK13409 putative ATPase RIL; Provisional
Probab=99.51 E-value=1.2e-14 Score=135.38 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=88.9
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe---eeCCcc------ccccc-----------------c---
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY---TLNPKA------VSVIE-----------------L--- 98 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~---~~~~~~------~~~~~-----------------l--- 98 (233)
.+..|+.++|+||||||||||+++|+|...+..|.+.+. +..++. .+..+ +
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 357788999999999999999999999998887776431 000100 01000 0
Q ss_pred ccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceE
Q psy12735 99 YGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL 175 (233)
Q Consensus 99 ~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~ 175 (233)
+|. .+.....+|+|..+++ .+|++.. ++|++++||||++++|+++...+.+..+.+....| ..+
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRv--aiAraL~---~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tv 507 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRV--AIAACLS---RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE--------ATA 507 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC--------CEE
Confidence 111 2333457888999998 6666655 68999999999999999999888877666544333 567
Q ss_pred EEEeCCcCccCh
Q psy12735 176 LFEVGDLQYASP 187 (233)
Q Consensus 176 i~et~dl~~~sP 187 (233)
++.+||+..+..
T Consensus 508 iivsHD~~~~~~ 519 (590)
T PRK13409 508 LVVDHDIYMIDY 519 (590)
T ss_pred EEEeCCHHHHHH
Confidence 777777766543
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.51 E-value=4.2e-15 Score=136.59 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=80.2
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----ccccccccC-------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLNP------------------- 104 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~~~~------------------- 104 (233)
.+..|+.++|+||||||||||+|+|+|...+..|.+.+.+.+....+. ..-++++.|
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHh
Confidence 445666799999999999999999999988777776654322110000 001122211
Q ss_pred -----------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 105 -----------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 105 -----------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
....+|+|..+++ .++++.. .+|++++||||++++|+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl--~la~al~---~~p~lLlLDEPt~gLD~~~~ 439 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV--LIAKCLE---ASPQLLIVDEPTRGVDVSAR 439 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH--HHHHHHh---hCCCEEEECCCCcCcChhHH
Confidence 1223445555555 3333333 48999999999999999999
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
..+.+..+.+.-.+ ..+|+.+||+..+.
T Consensus 440 ~~l~~~l~~l~~~g---------~tiIivsHd~~~i~ 467 (510)
T PRK15439 440 NDIYQLIRSIAAQN---------VAVLFISSDLEEIE 467 (510)
T ss_pred HHHHHHHHHHHhCC---------CEEEEECCCHHHHH
Confidence 88887766554333 45666667766553
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=5.6e-15 Score=135.49 Aligned_cols=124 Identities=9% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCcccc----cccccccccCC-----------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKAVS----VIELYGVLNPE----------------- 105 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~~~~----~~~l~g~~~~~----------------- 105 (233)
.+..|+.++|+||||||||||+|+|+|.+.+ ..|.+.+.+.+..... ...-+|++.|.
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 4456667999999999999999999999874 5676665432211000 00011111111
Q ss_pred ---------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 106 ---------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 106 ---------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv--~la~al~---~~p~lllLDEPt~~LD~ 436 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA--VLAKMLL---TNPRVLILDEPTRGVDV 436 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH--HHHHHHh---hCCCEEEEcCCCCCcCH
Confidence 123445555555 4444333 48999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.....+++..+.+...+ ..+|+.+||+..+
T Consensus 437 ~~~~~l~~~l~~l~~~g---------~tviivsHd~~~~ 466 (500)
T TIGR02633 437 GAKYEIYKLINQLAQEG---------VAIIVVSSELAEV 466 (500)
T ss_pred hHHHHHHHHHHHHHhCC---------CEEEEECCCHHHH
Confidence 99888877655544332 4566777777655
No 267
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.1e-15 Score=125.98 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=86.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++. .++|+|+||||||||+++|+|.+.+ ..|.+.+.+.+... ...
T Consensus 27 il~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 27 ALKNVSMQIPKNS---------------VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 4666777766555 5999999999999999999998764 56666654432210 001
Q ss_pred ccccccccCCCC--------------------------------------------------cCchhHHHHHHHHHhcCC
Q psy12735 96 IELYGVLNPETR--------------------------------------------------DWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 96 ~~l~g~~~~~~~--------------------------------------------------~~~~gi~~~~~~~~~~~~ 125 (233)
...++++.|... .+++|..+++ .++++.
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv--~laral 169 (258)
T PRK14268 92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL--CIARTL 169 (258)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH--HHHHHH
Confidence 122333333222 2333444443 222222
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
. .+|++++||||++++|.++...+.+..+.+. . + ..+++.+||+..+.- ...|+.++
T Consensus 170 ~---~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~--------~tiiivsH~~~~~~~-~~d~i~~l 226 (258)
T PRK14268 170 A---VKPKIILFDEPTSALDPISTARIEDLIMNLK-K-D--------YTIVIVTHNMQQAAR-ISDYTGFF 226 (258)
T ss_pred H---cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-C--------CEEEEEECCHHHHHH-hCCEEEEE
Confidence 2 4899999999999999999888877655442 1 2 578888888876532 23444443
No 268
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.9e-15 Score=124.10 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=82.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|...+ ..|.+.+.+.+... ...
T Consensus 18 ~l~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 18 ALKKINLDIEENQV---------------TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eeecceEEEcCCCE---------------EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 56677777766554 999999999999999999998652 35666554432210 001
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.+.. ..+++|..+++ .++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~lara 160 (250)
T PRK14240 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL--CIARA 160 (250)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH--HHHHH
Confidence 11122222221 23344444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.. .+|+++++|||++++|+.+...+.+..+.+. . + ..+++.+||+..+
T Consensus 161 l~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tiii~sH~~~~~ 208 (250)
T PRK14240 161 LA---VEPEVLLMDEPTSALDPISTLKIEELIQELK-K-D--------YTIVIVTHNMQQA 208 (250)
T ss_pred Hh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEEeCHHHH
Confidence 32 4899999999999999999888776655432 1 2 5788888887754
No 269
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.4e-15 Score=124.84 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=87.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh---hcCCCeEEeeeCCcccc---ccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST---VLGYPARTYTLNPKAVS---VIELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~---~~~~~i~~~~~~~~~~~---~~~l~ 99 (233)
+++++++.+.++.+ ++|+||||||||||+++++|.+. +..|.+.+.+.+..... ...-+
T Consensus 17 ~l~~isl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 17 ALFDINMQIEQNKI---------------TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 56677777765554 99999999999999999999874 45676665443221110 01112
Q ss_pred ccccCCC----------------------------------------------------CcCchhHHHHHHHHHhcCCCC
Q psy12735 100 GVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 100 g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~~~~~ 127 (233)
+++.|.. ...++|..+++ .++++..
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~- 158 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL--CIARALA- 158 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH--HHHHHHh-
Confidence 2222222 22344444444 3333322
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+|+++++|||++++|+.+...+.+....+. . + ..+++.+|++..+. .+..|+.++
T Consensus 159 --~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~--------~tiii~tH~~~~~~-~~~d~i~~l 214 (246)
T PRK14269 159 --IKPKLLLLDEPTSALDPISSGVIEELLKELS-H-N--------LSMIMVTHNMQQGK-RVADYTAFF 214 (246)
T ss_pred --cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-C--------CEEEEEecCHHHHH-hhCcEEEEE
Confidence 4899999999999999999888877655432 1 2 57888888887653 233444443
No 270
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6.1e-15 Score=123.64 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=83.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+. .|.+.+.+.+.... ..
T Consensus 19 il~~~s~~i~~G~---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 19 VLKNINMDFPERQ---------------ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EecceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 4566667665555 59999999999999999999998765 46665543322100 01
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ...++|..+++ .++++
T Consensus 84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv--~lara 161 (251)
T PRK14249 84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL--CIARV 161 (251)
T ss_pred hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH--HHHHH
Confidence 11233332222 22334444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.. .+|++++||||++++|+.....+.+..+.+. .+ ..+++.+||+..+.
T Consensus 162 l~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~--------~tilivsh~~~~~~ 210 (251)
T PRK14249 162 LA---IEPEVILMDEPCSALDPVSTMRIEELMQELK--QN--------YTIAIVTHNMQQAA 210 (251)
T ss_pred Hh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC--------CEEEEEeCCHHHHH
Confidence 32 4899999999999999999887766554431 12 57888888887765
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=4.2e-15 Score=136.30 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=85.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh--cCCCeEEeeeCCccccc----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLNPKAVSV----IELY 99 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~~~~~~~~~~~----~~l~ 99 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+ ..|.+.+.+.+....+. ...+
T Consensus 16 il~~isl~i~~Ge~---------------~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 16 ALDGIDLEVRPGEC---------------VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred eecceEEEEeCCcE---------------EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 56777777766655 999999999999999999998875 45655443221100000 0001
Q ss_pred cccc----------------------------------------------------CCCCcCchhHHHHHHHHHhcCCCC
Q psy12735 100 GVLN----------------------------------------------------PETRDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 100 g~~~----------------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~ 127 (233)
|++. .....+|+|..+++ .++++..
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~iA~al~- 157 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV--EIAKALN- 157 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH--HHHHHHh-
Confidence 1111 11235666777777 5555444
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|++++||||++++|+.....+.+..+.+... | ..+++.+||+..+.
T Consensus 158 --~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g--------~tviiitHd~~~~~ 205 (500)
T TIGR02633 158 --KQARLLILDEPSSSLTEKETEILLDIIRDLKAH-G--------VACVYISHKLNEVK 205 (500)
T ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCcHHHHH
Confidence 589999999999999999998888766655322 3 45666667766553
No 272
>KOG0056|consensus
Probab=99.51 E-value=2.6e-15 Score=132.78 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=88.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~ 102 (233)
++++++|.+.+ |+.+++|||||+||||++++|.+++....|.+.+++.+.+..+.. ..+|.+
T Consensus 553 vl~disF~v~p---------------GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 553 VLSDISFTVQP---------------GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred eeecceEEecC---------------CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 45666666655 555999999999999999999999999999999999988765544 458999
Q ss_pred cCCCCcCchhHHHHHHHHHhcC--------------------------------------CCCCCC----------CceE
Q psy12735 103 NPETRDWYDGLLSNIFRAVNKP--------------------------------------LDPGSK----------ERKY 134 (233)
Q Consensus 103 ~~~~~~~~~gi~~~~~~~~~~~--------------------------------------~~~~~~----------~~~~ 134 (233)
+|++-.|+|+++-|+ +.+++ ++|++| .|.+
T Consensus 618 PQDtvLFNdTI~yNI--ryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 618 PQDTVLFNDTILYNI--RYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cCcceeecceeeehe--eecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 999888888777666 32222 223332 7999
Q ss_pred EEEeCCCCHHhHHhHHHHhhcccccc
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILT 160 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~ 160 (233)
+++||.++++|..+-..+-....++|
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlc 721 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLC 721 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHh
Confidence 99999999999876555544433333
No 273
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.51 E-value=4.4e-14 Score=118.92 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=90.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++. .++|+|+||||||||+++|+|.+.+..|.+.+.+.+..... ....++++
T Consensus 36 il~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v 100 (257)
T cd03288 36 VLKHVKAYIKPGQ---------------KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSII 100 (257)
T ss_pred ceeEEEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence 5666777766555 49999999999999999999998888887765432211000 00111111
Q ss_pred cCC--------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 103 NPE--------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 103 ~~~--------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.|. ...+++|..+++ .++++.. .+|
T Consensus 101 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl--~laral~---~~p 175 (257)
T cd03288 101 LQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLF--CLARAFV---RKS 175 (257)
T ss_pred CCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHH--HHHHHHh---cCC
Confidence 111 124555666666 4444443 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++++|||++++|++....+++....+. . +..+++.+|++..+.. ..|+.++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~--~--------~~tiii~sh~~~~~~~--~dri~~l 227 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAF--A--------DRTVVTIAHRVSTILD--ADLVLVL 227 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhc--C--------CCEEEEEecChHHHHh--CCEEEEE
Confidence 9999999999999998877766544321 1 2678888999988753 3444443
No 274
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.3e-15 Score=124.10 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=85.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh--h---cCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST--V---LGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~--~---~~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+. + .+|.+.+.+.+.... ..
T Consensus 19 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 19 AVKDVSMDFPENS---------------VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEecceEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4566667665555 599999999999999999999875 3 356665544322100 01
Q ss_pred ccccccccCCC----------------------------------------------------CcCchhHHHHHHHHHhc
Q psy12735 96 IELYGVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 96 ~~l~g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~ 123 (233)
...++++.|.. ..+++|..+++ .+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl--~lar 161 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL--CIAR 161 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH--HHHH
Confidence 11123222221 12333444443 2222
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+.. .+|+++++|||++++|..+...+++..+.+.. + ..+++.+|++..+. ....|+.++
T Consensus 162 al~---~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~--------~tiiivsH~~~~~~-~~~d~i~~l 220 (252)
T PRK14256 162 TIA---VKPEVILMDEPASALDPISTLKIEELIEELKE--K--------YTIIIVTHNMQQAA-RVSDYTAFF 220 (252)
T ss_pred HHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C--------CcEEEEECCHHHHH-hhCCEEEEE
Confidence 222 48999999999999999998887776554421 1 46788888887653 233455444
No 275
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.9e-15 Score=124.77 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=86.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+... ...
T Consensus 19 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 19 AVEDVNLNIEPRS---------------VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred eeeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 4566677765555 5999999999999999999998863 46766654432210 001
Q ss_pred ccccccccCCC----------------------------------------------------CcCchhHHHHHHHHHhc
Q psy12735 96 IELYGVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 96 ~~l~g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~ 123 (233)
...++++.+.. ..+++|..+++ .+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~lar 161 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL--CIAR 161 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH--HHHH
Confidence 11122222221 22334444444 3333
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+.. .+|+++++|||++++|+.....+......+. . + ..+++.+||+..+.. ...|+.++
T Consensus 162 al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~--------~tviivsH~~~~~~~-~~d~i~~l 220 (258)
T PRK14241 162 AIA---VEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-D--------YTIVIVTHNMQQAAR-VSDQTAFF 220 (258)
T ss_pred HHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C--------CEEEEEecCHHHHHH-hCCEEEEE
Confidence 322 4899999999999999998877766554432 1 2 478888888876533 23455444
No 276
>PLN03232 ABC transporter C family member; Provisional
Probab=99.51 E-value=1.2e-14 Score=147.65 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=88.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.++|+|+||||||||+++|.|++.+.+|.+.+++.+...++.. +.+++++|++..|++++++|+--
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s 1337 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC
Confidence 3455666999999999999999999999999999999988877655433 34677777777666666655510
Q ss_pred -------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 120 -------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
.+|++. -.+|++++|||+++++|.++-..+.+..
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL---Lr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL---LRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH---HhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 111111 1389999999999999999877766554
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.. .. +.++|..+|.++.+
T Consensus 1415 ~~~-~~---------~~TvI~IAHRl~ti 1433 (1495)
T PLN03232 1415 REE-FK---------SCTMLVIAHRLNTI 1433 (1495)
T ss_pred HHH-cC---------CCEEEEEeCCHHHH
Confidence 432 12 24566666666433
No 277
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.3e-14 Score=115.56 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=85.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc----ccccccccc-----------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV----SVIELYGVL----------------------- 102 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~----~~~~l~g~~----------------------- 102 (233)
..|+..+|+||||||||||++++++.+.+.++.+.+.+...... +.++.+|++
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~ 134 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFF 134 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccc
Confidence 45666999999999999999999998887766655433221110 111112211
Q ss_pred -------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 103 -------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 103 -------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
+......|.|...++ -++++.. .+|.+++||||++++|......
T Consensus 135 ~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv--LiaRALv---~~P~LLiLDEP~~GLDl~~re~ 209 (257)
T COG1119 135 ASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV--LIARALV---KDPELLILDEPAQGLDLIAREQ 209 (257)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH--HHHHHHh---cCCCEEEecCccccCChHHHHH
Confidence 011112334555555 3333332 5899999999999999998877
Q ss_pred HhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 152 VMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+++....+... +....+++.||....+.|- +++|-++
T Consensus 210 ll~~l~~~~~~-------~~~~~ll~VtHh~eEi~~~-~th~lll 246 (257)
T COG1119 210 LLNRLEELAAS-------PGAPALLFVTHHAEEIPPC-FTHRLLL 246 (257)
T ss_pred HHHHHHHHhcC-------CCCceEEEEEcchhhcccc-cceEEEe
Confidence 77654443332 1237899999999999775 4555443
No 278
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.7e-15 Score=124.94 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=85.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc--c---cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA--V---SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~--~---~~ 95 (233)
+++++++.+.++. .++|+|+||||||||+++|+|.+. +..|.+.+.+.+... . ..
T Consensus 19 ~l~~~sl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 19 ALHGISLDFEEKE---------------LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eeeeeeEEEcCCC---------------EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4566666665554 599999999999999999999985 256666554432210 0 01
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ..+++|..+++ .++++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~--~lara 161 (251)
T PRK14251 84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI--CIARA 161 (251)
T ss_pred hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH--HHHHH
Confidence 11123322221 12333444444 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|++++||||++++|+++...+++....+. . ...+++.+||+..+... ..|+.++
T Consensus 162 l~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~---------~~tiiiisH~~~~~~~~-~d~i~~l 219 (251)
T PRK14251 162 LA---VRPKVVLLDEPTSALDPISSSEIEETLMELK-H---------QYTFIMVTHNLQQAGRI-SDQTAFL 219 (251)
T ss_pred Hh---cCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c---------CCeEEEEECCHHHHHhh-cCEEEEE
Confidence 22 4899999999999999999888776655432 1 25788888888765432 2444443
No 279
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.5e-14 Score=122.04 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=90.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~-----~~ 95 (233)
++++++|.+.++.+ ++|+|+||||||||+++|+|.+.+ ..|.+.+.+.+.... ..
T Consensus 23 ~l~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 23 AVRDSHVPIRKNEI---------------TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred EEeeeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 45667777766554 999999999999999999999865 467666654432110 11
Q ss_pred ccccccccCCCC-------------------------------------------------cCchhHHHHHHHHHhcCCC
Q psy12735 96 IELYGVLNPETR-------------------------------------------------DWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 96 ~~l~g~~~~~~~-------------------------------------------------~~~~gi~~~~~~~~~~~~~ 126 (233)
...++++.|... .++.|..+++ .++++..
T Consensus 88 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv--~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL--CIARAIA 165 (261)
T ss_pred hhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH--HHHHHHH
Confidence 122344333322 1233333333 2222222
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEE
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYV 198 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~ 198 (233)
.+|+++++|||++++|+.+...+++....+. . + ..+++.+|++..+. ....|+.++.+
T Consensus 166 ---~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~--------~tii~isH~~~~i~-~~~d~v~~l~~ 223 (261)
T PRK14263 166 ---TEPEVLLLDEPCSALDPIATRRVEELMVELK-K-D--------YTIALVTHNMQQAI-RVADTTAFFSV 223 (261)
T ss_pred ---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEeCCHHHHH-HhCCEEEEEec
Confidence 4899999999999999999888877655442 1 2 57888888888653 44467766653
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=7.2e-15 Score=134.79 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccccc--------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLN-------------------- 103 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~~~-------------------- 103 (233)
.+..|+.++|+||||||||||+|+|+|.+++.+|.+.+.+.+..... ....++++.
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 45667779999999999999999999998877777765432110000 000011111
Q ss_pred -------------------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 104 -------------------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 104 -------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
.....+|+|..+++ .+++... .+|++++||||++++|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl--~la~al~---~~p~lllLDEPt~~LD~ 429 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA--ILGRWLS---EDMKVILLDEPTRGIDV 429 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH--HHHHHHc---cCCCEEEEcCCCCCCCH
Confidence 11234555666666 4444443 58999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+...+++....+.-.+ ..+++.+||+..+.
T Consensus 430 ~~~~~l~~~l~~l~~~g---------~tviivsHd~~~~~ 460 (501)
T PRK11288 430 GAKHEIYNVIYELAAQG---------VAVLFVSSDLPEVL 460 (501)
T ss_pred hHHHHHHHHHHHHHhCC---------CEEEEECCCHHHHH
Confidence 99988887665554333 45666677766554
No 281
>PLN03130 ABC transporter C family member; Provisional
Probab=99.50 E-value=1.6e-14 Score=147.25 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+++|+.|+|||+||||||||+++|.|++.+.+|.+.+++++.+.++.. +.+++++|++..|++++++|+.-
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t 1340 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCC
Confidence 3455666999999999999999999999999999999998887665543 44778888887777777766521
Q ss_pred -------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 120 -------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 120 -------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
.+|++. -.+|++++|||+++++|.++-..+.+..
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL---Lr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL---LRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH---HcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 111111 1389999999999999999876665554
Q ss_pred cc
Q psy12735 157 KI 158 (233)
Q Consensus 157 ~~ 158 (233)
+.
T Consensus 1418 ~~ 1419 (1622)
T PLN03130 1418 RE 1419 (1622)
T ss_pred HH
Confidence 43
No 282
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=5.9e-15 Score=136.20 Aligned_cols=127 Identities=19% Similarity=0.142 Sum_probs=82.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc------cccccccccCC---------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS------VIELYGVLNPE--------------- 105 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~------~~~l~g~~~~~--------------- 105 (233)
-.+..|+.++|+||||||||||+|+++|.+. ..|.+.+.+.+....+ ....+|++.|.
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 4556677799999999999999999999875 5666655432211100 00112222221
Q ss_pred -------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 106 -------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 106 -------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI--AIARALI---LKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH--HHHHHHh---CCCCEEEeeCCccccCHHH
Confidence 224445555555 3444333 5899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
...+++..+.+....| ..+|+.+||+..+..
T Consensus 461 ~~~l~~~l~~~~~~~~--------~tvi~vsHd~~~~~~ 491 (529)
T PRK15134 461 QAQILALLKSLQQKHQ--------LAYLFISHDLHVVRA 491 (529)
T ss_pred HHHHHHHHHHHHHhhC--------CEEEEEeCCHHHHHH
Confidence 9888877665543323 578888888877643
No 283
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.7e-14 Score=123.27 Aligned_cols=123 Identities=17% Similarity=0.205 Sum_probs=77.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----cccccccccccCC--------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSVIELYGVLNPE-------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~~~l~g~~~~~-------------- 105 (233)
.+|+.++|+||||||||||+++|+|.+. +..|.+.+.+.+... ......++++.|.
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 142 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAY 142 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHH
Confidence 4455599999999999999999999976 456766554332110 0011112222222
Q ss_pred -----------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHH
Q psy12735 106 -----------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150 (233)
Q Consensus 106 -----------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~ 150 (233)
...+++|..+++ .++++.. .+|++++||||++++|..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv--~LAraL~---~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 143 GLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL--CIARAIA---PDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCCCCCHHHHH
Confidence 123444444444 3333332 489999999999999999988
Q ss_pred HHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 151 SVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 151 ~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.+.+..+.+.. ...+++.+||+..+..
T Consensus 218 ~l~~~L~~~~~----------~~tiii~tH~~~~i~~ 244 (285)
T PRK14254 218 KIEDLIEELAE----------EYTVVIVTHNMQQAAR 244 (285)
T ss_pred HHHHHHHHHhc----------CCEEEEEeCCHHHHHh
Confidence 87766554421 1467777888776543
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.49 E-value=1e-14 Score=133.87 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=81.8
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----cccccccccCC------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE------------------ 105 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~~~~~------------------ 105 (233)
.+..|+.++|+||||||||||+++|+|...+.+|.+.+.+......+ ...-+|++.|.
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 44556669999999999999999999998887777766442211100 00112222221
Q ss_pred ---------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 106 ---------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 106 ---------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv--~lA~al~---~~p~lllLDEPt~~LD~ 428 (501)
T PRK10762 354 TALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV--AIARGLM---TRPKVLILDEPTRGVDV 428 (501)
T ss_pred hhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH--HHHHHHh---hCCCEEEEcCCCCCCCH
Confidence 123444555555 3444333 48999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.....+.+..+.+.-. | ..+++.+||+..+.
T Consensus 429 ~~~~~l~~~l~~~~~~-g--------~tviivtHd~~~~~ 459 (501)
T PRK10762 429 GAKKEIYQLINQFKAE-G--------LSIILVSSEMPEVL 459 (501)
T ss_pred hHHHHHHHHHHHHHHC-C--------CEEEEEcCCHHHHH
Confidence 9998888766655322 3 46777777777654
No 285
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=2.3e-15 Score=122.84 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=73.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCC
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPE 105 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~ 105 (233)
++.+++|++.++.+ .+++||||+||||.++++.+++.+..|.+.+.+-... ....+.+||.+.+
T Consensus 17 av~~isf~v~~G~i---------------~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~-~~~~~rIGyLPEE 80 (300)
T COG4152 17 AVDNISFEVPPGEI---------------FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS-QEIKNRIGYLPEE 80 (300)
T ss_pred eecceeeeecCCeE---------------EEeecCCCCCccchHHHHhccCCccCceEEEcCcchh-hhhhhhcccChhh
Confidence 56677888777766 9999999999999999999999999998888663321 1112223332222
Q ss_pred C-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEe
Q psy12735 106 T-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFD 138 (233)
Q Consensus 106 ~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlD 138 (233)
. .+.+.|..+++ ++..+.. ++|++++||
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI--Qfisavi---HePeLlILD 155 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI--QFISAVI---HEPELLILD 155 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH--HHHHHHh---cCCCEEEec
Confidence 1 12344555554 3322222 599999999
Q ss_pred CCCCHHhHHhHHHHhh
Q psy12735 139 GDVDALWIENMNSVMD 154 (233)
Q Consensus 139 ep~~~~~~~~l~~~l~ 154 (233)
||.+++|+.+..-+-+
T Consensus 156 EPFSGLDPVN~elLk~ 171 (300)
T COG4152 156 EPFSGLDPVNVELLKD 171 (300)
T ss_pred CCccCCChhhHHHHHH
Confidence 9999999987654443
No 286
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.49 E-value=1.2e-14 Score=133.99 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=46.4
Q ss_pred cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 108 DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 108 ~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+|+|..+++ .++++.. .+|++++||||++++|++....+++..+.+....| ..+++.+||+..+.
T Consensus 168 ~LSgGq~qrv--~iA~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tviivtHd~~~~~ 233 (520)
T TIGR03269 168 DLSGGEKQRV--VLARQLA---KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG--------ISMVLTSHWPEVIE 233 (520)
T ss_pred cCCHHHHHHH--HHHHHHh---cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC--------cEEEEEeCCHHHHH
Confidence 3455555555 4444443 58999999999999999999888776655533323 57788888877663
No 287
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.7e-14 Score=122.19 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=77.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc-----cccccccccccCCC-------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA-----VSVIELYGVLNPET------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~-----~~~~~l~g~~~~~~------------- 106 (233)
.+|+.++|+||||||||||+++|+|.+.+ .+|.+.+.+.+... ......++++.|..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 122 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAY 122 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHH
Confidence 34555999999999999999999999864 56766654432211 00111233333322
Q ss_pred ---------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 107 ---------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 107 ---------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~laral~---~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14235 123 GPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL--CIARAIA---VSPEVILMDEPCSALDPI 197 (267)
T ss_pred HHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCcCCCHH
Confidence 22333444444 2222222 489999999999999999
Q ss_pred hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 148 NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 148 ~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
....+++..+.+. .+ ..+++.+||+..+.
T Consensus 198 ~~~~l~~~L~~l~--~~--------~tiiivtH~~~~~~ 226 (267)
T PRK14235 198 ATAKVEELIDELR--QN--------YTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHHHHHHHHh--cC--------CeEEEEEcCHHHHH
Confidence 9888877655432 12 57888889887663
No 288
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-14 Score=116.33 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=85.5
Q ss_pred HHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCcccccccc--c
Q psy12735 24 ETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVSVIEL--Y 99 (233)
Q Consensus 24 ~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~~~~l--~ 99 (233)
+++++.+|+.+.++.+ .+|+||||||||||.++|+|. |...+|.+.+.+.+...++..+. .
T Consensus 17 keILkgvnL~v~~GEv---------------haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 17 KEILKGVNLTVKEGEV---------------HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred hhhhcCcceeEcCCcE---------------EEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 4688899999887776 999999999999999999985 34566666665544422222211 0
Q ss_pred cc--ccCCC----------------------------------------------------CcCchhHHHHHHHHHhcCC
Q psy12735 100 GV--LNPET----------------------------------------------------RDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 100 g~--~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~~~ 125 (233)
|. .-|.+ --||+|-..|. ++.+..
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~--EilQ~~ 159 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN--EILQLL 159 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH--HHHHHH
Confidence 10 00111 12333433333 333222
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEE
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i 176 (233)
. .+|++.+||||-+++|++++..+-+....+.-++...+.++|.-+++
T Consensus 160 ~---lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll 207 (251)
T COG0396 160 L---LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLL 207 (251)
T ss_pred h---cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 2 58999999999999999999887766555555555555555555543
No 289
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6.1e-15 Score=138.77 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=80.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe-----eeCCcc----c----cc----------------ccc-
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY-----TLNPKA----V----SV----------------IEL- 98 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~-----~~~~~~----~----~~----------------~~l- 98 (233)
+..|+.++|+||||||||||+|+|+|...+..|.+.+. +..++. + +. .++
T Consensus 335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 414 (638)
T PRK10636 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYL 414 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHH
Confidence 45566699999999999999999999998877776542 100100 0 00 000
Q ss_pred --ccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCc
Q psy12735 99 --YGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 99 --~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~ 172 (233)
+++ .+.....+|+|..+++ .++++.. .+|++++||||++++|+.+...+.+....+ +|
T Consensus 415 ~~~~l~~~~~~~~~~~LSgGekqRl--~La~~l~---~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-------- 478 (638)
T PRK10636 415 GGFGFQGDKVTEETRRFSGGEKARL--VLALIVW---QRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-------- 478 (638)
T ss_pred HHcCCChhHhcCchhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC--------
Confidence 111 1122346778888888 5655554 589999999999999999998887765543 23
Q ss_pred ceEEEEeCCcCcc
Q psy12735 173 CQLLFEVGDLQYA 185 (233)
Q Consensus 173 ~~~i~et~dl~~~ 185 (233)
.+|+.+||+..+
T Consensus 479 -tvi~vSHd~~~~ 490 (638)
T PRK10636 479 -ALVVVSHDRHLL 490 (638)
T ss_pred -eEEEEeCCHHHH
Confidence 566666666554
No 290
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1e-14 Score=123.26 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=85.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+. +..|.+.+.+.+... ...
T Consensus 25 il~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 25 AVKNVWLDIPKNQ---------------ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeecceEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 4566666665544 599999999999999999999865 245666554432210 001
Q ss_pred ccccccccCCC-------------------------------------------------CcCchhHHHHHHHHHhcCCC
Q psy12735 96 IELYGVLNPET-------------------------------------------------RDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 96 ~~l~g~~~~~~-------------------------------------------------~~~~~gi~~~~~~~~~~~~~ 126 (233)
...++++.|.. ..+++|..+++ .++++..
T Consensus 90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~laral~ 167 (264)
T PRK14243 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL--CIARAIA 167 (264)
T ss_pred hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH--HHHHHHh
Confidence 11123332221 12333444444 3333332
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+|+++++|||++++|+.....+++....+.- ...+++.+||+..+. ....|..++.
T Consensus 168 ---~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----------~~tvi~vtH~~~~~~-~~~d~v~~l~ 224 (264)
T PRK14243 168 ---VQPEVILMDEPCSALDPISTLRIEELMHELKE----------QYTIIIVTHNMQQAA-RVSDMTAFFN 224 (264)
T ss_pred ---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----------CCEEEEEecCHHHHH-HhCCEEEEEe
Confidence 48999999999999999998887766544321 147888888877653 3334444443
No 291
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1e-14 Score=122.31 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=82.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~~~~~~-----~~~ 95 (233)
++++++|.+.++. .++|+||||||||||+|+|+|.+.+. .|.+.+.+.+... ...
T Consensus 19 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 19 AVKNVNLDVQRGT---------------VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred eeccceEEEcCCC---------------EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 4566666665554 59999999999999999999988643 4666554332210 001
Q ss_pred ccccccccCCC----------------------------------------------------CcCchhHHHHHHHHHhc
Q psy12735 96 IELYGVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 96 ~~l~g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~ 123 (233)
..-++++.|.. ..+++|..+++ .+++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~lar 161 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL--CIAR 161 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH--HHHH
Confidence 11122322221 22333444444 3333
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.. .+|+++++|||++++|..+...+++..+.+. .+ ..+++.+|++..+.
T Consensus 162 al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~--------~tiii~sH~~~~~~ 211 (252)
T PRK14272 162 ALA---VEPEILLMDEPTSALDPASTARIEDLMTDLK--KV--------TTIIIVTHNMHQAA 211 (252)
T ss_pred HHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC--------CeEEEEeCCHHHHH
Confidence 222 4899999999999999999888777655432 12 57888888888654
No 292
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2.2e-14 Score=120.19 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh---hh--cCCCeEEeeeCCccc-----ccccccccccCCC--------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS---TV--LGYPARTYTLNPKAV-----SVIELYGVLNPET-------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~---~~--~~~~i~~~~~~~~~~-----~~~~l~g~~~~~~-------------- 106 (233)
.|+.++|+||||||||||+++|+|.. .+ .+|.+.+.+.+.... .....++++.|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~ 107 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence 44459999999999999999999863 32 356665544322110 0011123322221
Q ss_pred -------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 107 -------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 107 -------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
..+++|..+++ .++++.. .+|++++||||++++|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral~---~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 108 LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL--CIARAMA---VSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCccCCHHHH
Confidence 22333444444 2332222 48999999999999999998
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
..+.+..+.+. . + ..+++.+||+..+. ....|+.++
T Consensus 183 ~~l~~~l~~~~-~-~--------~tiiivtH~~~~~~-~~~d~v~~l 218 (250)
T PRK14245 183 AKVEELIHELK-K-D--------YTIVIVTHNMQQAA-RVSDKTAFF 218 (250)
T ss_pred HHHHHHHHHHh-c-C--------CeEEEEeCCHHHHH-hhCCEEEEE
Confidence 88877655542 1 2 57888888888653 233454444
No 293
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2.5e-14 Score=119.83 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=79.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccc-----ccccccccccCCC--------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAV-----SVIELYGVLNPET-------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~-----~~~~l~g~~~~~~-------------- 106 (233)
+|+.++|+||||||||||+++|+|.+.+ ..|.+.+.+.+.... .....++++.|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 107 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence 4445999999999999999999998763 566665544322100 0111122222221
Q ss_pred -------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 107 -------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 107 -------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
..+++|..+++ .++++.. .+|+++++|||++++|..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~--~la~al~---~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14262 108 PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL--CIARALA---VEPEVILLDEPTSALDPIAT 182 (250)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH--HHHHHHh---CCCCEEEEeCCccccCHHHH
Confidence 22334444444 3333332 48999999999999999998
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
..+.+....+. .+ ..+++.+|++..+. ....|+.++
T Consensus 183 ~~l~~~l~~~~--~~--------~tili~sH~~~~~~-~~~d~i~~l 218 (250)
T PRK14262 183 QRIEKLLEELS--EN--------YTIVIVTHNIGQAI-RIADYIAFM 218 (250)
T ss_pred HHHHHHHHHHh--cC--------cEEEEEeCCHHHHH-HhCCEEEEE
Confidence 88776655432 12 57888888877542 233444443
No 294
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=9e-15 Score=122.63 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=81.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh--h---cCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST--V---LGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~--~---~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|... + ..|.+.+.+.+... ...
T Consensus 20 ~l~~~s~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 20 ALNSVSLDFYPNE---------------ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eeeeeeEEEcCCc---------------EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 4566677765555 599999999999999999999843 4 35666554432210 001
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ..+++|..+++ .++++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~lara 162 (252)
T PRK14239 85 RKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV--CIARV 162 (252)
T ss_pred hhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH--HHHHH
Confidence 11233333322 22333333333 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.. .+|+++++|||++++|..+...+.+..+.+. . + ..+++.+||+..+..
T Consensus 163 l~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~--------~tii~~sH~~~~~~~ 212 (252)
T PRK14239 163 LA---TSPKIILLDEPTSALDPISAGKIEETLLGLK-D-D--------YTMLLVTRSMQQASR 212 (252)
T ss_pred Hh---cCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-C--------CeEEEEECCHHHHHH
Confidence 22 4899999999999999999888876655432 1 2 478888888875533
No 295
>PRK13409 putative ATPase RIL; Provisional
Probab=99.48 E-value=1.1e-14 Score=135.69 Aligned_cols=133 Identities=20% Similarity=0.158 Sum_probs=87.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-----------EeeeCC------------------ccc-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-----------TYTLNP------------------KAV----- 93 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-----------~~~~~~------------------~~~----- 93 (233)
.+..|+.++|+|||||||||++|+|+|.+.+..|.+. +.+.+. +..
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 5677888999999999999999999999988877764 211110 000
Q ss_pred ----cccc----------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHH
Q psy12735 94 ----SVIE----------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150 (233)
Q Consensus 94 ----~~~~----------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~ 150 (233)
+..+ .+|. .+.....+|+|..+++ .++++.. .+|++++||||++++|+....
T Consensus 175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv--~ia~al~---~~p~lllLDEPts~LD~~~~~ 249 (590)
T PRK13409 175 VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV--AIAAALL---RDADFYFFDEPTSYLDIRQRL 249 (590)
T ss_pred hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCCCCCHHHHH
Confidence 0000 0111 1223346777888888 6665554 689999999999999999988
Q ss_pred HHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 151 SVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 151 ~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+.+..+.+.- + ..+++.+||+..+. .+..|..++
T Consensus 250 ~l~~~i~~l~~-g---------~tvIivsHd~~~l~-~~~D~v~vl 284 (590)
T PRK13409 250 NVARLIRELAE-G---------KYVLVVEHDLAVLD-YLADNVHIA 284 (590)
T ss_pred HHHHHHHHHHC-C---------CEEEEEeCCHHHHH-HhCCEEEEE
Confidence 88776665543 3 45666666666542 233444343
No 296
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.48 E-value=9.2e-15 Score=122.57 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=82.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCcccc---------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVS--------- 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~--------- 94 (233)
+++++++.+.++. .++|+|+||||||||+++|+|. +.+.+|.+.+.+.+.....
T Consensus 22 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 22 ILKGLNLSINKGE---------------IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred eeecceeEEcCCc---------------EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 4566666665554 5999999999999999999997 4566666554332211000
Q ss_pred --------------cc--------------------------------ccccc----ccCCCC-cCchhHHHHHHHHHhc
Q psy12735 95 --------------VI--------------------------------ELYGV----LNPETR-DWYDGLLSNIFRAVNK 123 (233)
Q Consensus 95 --------------~~--------------------------------~l~g~----~~~~~~-~~~~gi~~~~~~~~~~ 123 (233)
.. +.+|. .+.... ..++|..+++ .+++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv--~la~ 164 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN--EILQ 164 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH--HHHH
Confidence 00 00010 011112 2566666666 4444
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.. .+|++++||||++++|..+...+.+..+.+.. .| ..+|+.+||+..+.
T Consensus 165 al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g--------~tii~~tH~~~~~~ 215 (252)
T CHL00131 165 MAL---LDSELAILDETDSGLDIDALKIIAEGINKLMT-SE--------NSIILITHYQRLLD 215 (252)
T ss_pred HHH---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC--------CEEEEEecCHHHHH
Confidence 433 58999999999999999998888776554432 23 56777777776543
No 297
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2e-14 Score=121.94 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=81.5
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----cccccccccccCCCC-----------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSVIELYGVLNPETR----------- 107 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~~~l~g~~~~~~~----------- 107 (233)
+.+|+.++|+|+||||||||+++|+|.+. +..|.+.+.+.+... ......++++.|...
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~ 126 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVT 126 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHH
Confidence 34555699999999999999999999876 466777665432210 001112333333221
Q ss_pred ----------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 108 ----------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 108 ----------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
.+++|..+++ .+++... .+|++++||||++++|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv--~laraL~---~~p~lllLDEPt~~LD~~ 201 (271)
T PRK14238 127 YGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL--CIARCLA---IEPDVILMDEPTSALDPI 201 (271)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCCcCCHH
Confidence 2233333333 2222222 489999999999999999
Q ss_pred hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 148 NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 148 ~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
+...+.+....+. .+ ..+++.+||+..+.- ...|+.++
T Consensus 202 ~~~~l~~~l~~~~--~~--------~tiiivsH~~~~i~~-~~d~i~~l 239 (271)
T PRK14238 202 STLKVEELVQELK--KD--------YSIIIVTHNMQQAAR-ISDKTAFF 239 (271)
T ss_pred HHHHHHHHHHHHH--cC--------CEEEEEEcCHHHHHH-hCCEEEEE
Confidence 9888776554432 12 578888999887543 23444443
No 298
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.3e-14 Score=121.80 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=81.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc-----cccccccccccCCC-------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA-----VSVIELYGVLNPET------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~-----~~~~~l~g~~~~~~------------- 106 (233)
..|+.++|+||||||||||+++|+|.+.+ ..|.+.+.+.+... .....-++++.|..
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~ 123 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF 123 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHh
Confidence 34555999999999999999999998752 35666554432210 00011122222221
Q ss_pred ------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHH
Q psy12735 107 ------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150 (233)
Q Consensus 107 ------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~ 150 (233)
..+++|..+++ .++++.. .+|++++||||++++|+....
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~LAraL~---~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 124 APRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL--CIARAIA---MKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH--HHHHHHh---hCCCEEEEeCCcccCCHHHHH
Confidence 23344444444 3333332 489999999999999999988
Q ss_pred HHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 151 SVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 151 ~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+.+....+. . + ..+++.+||+..+ +....|..++.
T Consensus 199 ~l~~~L~~~~-~-~--------~tiii~sH~~~~~-~~~~d~i~~l~ 234 (274)
T PRK14265 199 QVEELCLELK-E-Q--------YTIIMVTHNMQQA-SRVADWTAFFN 234 (274)
T ss_pred HHHHHHHHHh-c-C--------CEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 8877655442 1 2 4678888888766 33345555554
No 299
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.2e-14 Score=121.41 Aligned_cols=140 Identities=13% Similarity=0.176 Sum_probs=86.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|.+. +.+|.+.+.+.+... ...
T Consensus 35 il~~vsl~i~~Ge---------------~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 99 (267)
T PRK14237 35 AIKGIDMQFEKNK---------------ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM 99 (267)
T ss_pred eEeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHH
Confidence 4566666665554 599999999999999999999885 356666554332210 001
Q ss_pred ccccccccCC---------------------------------------------------CCcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|. ...+++|..+++ .++++
T Consensus 100 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl--~lara 177 (267)
T PRK14237 100 RKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL--CIARA 177 (267)
T ss_pred hcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH--HHHHH
Confidence 1112332222 223444544444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|+++++|||++++|+.....+.+....+. .+ ..+++.+|++..+ +....|+.++
T Consensus 178 l~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~--------~tiii~tH~~~~~-~~~~d~i~~l 235 (267)
T PRK14237 178 IA---VKPDILLMDEPASALDPISTMQLEETMFELK--KN--------YTIIIVTHNMQQA-ARASDYTAFF 235 (267)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC--------CEEEEEecCHHHH-HHhcCEEEEE
Confidence 32 4899999999999999998877776554432 12 5778888888754 2233444444
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.4e-14 Score=132.98 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=79.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhh-hcCCCeEEeeeCCcccc----cccccccccCC-----------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTST-VLGYPARTYTLNPKAVS----VIELYGVLNPE----------------- 105 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-~~~~~i~~~~~~~~~~~----~~~l~g~~~~~----------------- 105 (233)
.+..|+.++|+||||||||||+|+|+|.+. +.+|.+.+.+.+..... ...-+|++.|.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 456677799999999999999999999987 46777765432211000 00011222211
Q ss_pred ---------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 106 ---------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 106 ---------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv--~lA~al~---~~p~lllLDEPt~~LD~ 438 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA--VLAKCLL---LNPKILILDEPTRGIDV 438 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH--HHHHHHh---hCCCEEEEcCCCCCcCH
Confidence 123344555554 3333333 48999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+...+.+....+... | ..+++.+||+..+.
T Consensus 439 ~~~~~l~~~l~~l~~~-g--------~tvi~~sHd~~~~~ 469 (506)
T PRK13549 439 GAKYEIYKLINQLVQQ-G--------VAIIVISSELPEVL 469 (506)
T ss_pred hHHHHHHHHHHHHHHC-C--------CEEEEECCCHHHHH
Confidence 9988887765554433 3 46777777776553
No 301
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=9.4e-15 Score=122.33 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=85.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA----VSVI 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~----~~~~ 96 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+... ....
T Consensus 18 ~l~~vs~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 18 ALKSINLPIPARQ---------------VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eeecceEEecCCC---------------EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 5667777766555 4999999999999999999998864 35555554322100 0011
Q ss_pred cccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcCC
Q psy12735 97 ELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 97 ~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~~ 125 (233)
..++++.+.. ..+++|..+++ .+++..
T Consensus 83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~laral 160 (249)
T PRK14253 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL--CIARTI 160 (249)
T ss_pred hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH--HHHHHH
Confidence 1122222221 22334444444 333332
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
. .+|+++++|||++++|+.+...+.+..+.+.. ...+++.+|++..+.. ...|+.++
T Consensus 161 ~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----------~~tii~~sh~~~~~~~-~~d~i~~l 217 (249)
T PRK14253 161 A---MEPDVILMDEPTSALDPIATHKIEELMEELKK----------NYTIVIVTHSMQQARR-ISDRTAFF 217 (249)
T ss_pred H---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----------CCeEEEEecCHHHHHH-hCCEEEEE
Confidence 2 48999999999999999998887766554421 1578888888876433 33444443
No 302
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7.3e-15 Score=123.20 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=86.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++. .++|+|+||||||||+++|+|...+ ..|.+.+.+.+.... ..
T Consensus 19 ~l~~isl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 19 ALNDINLPIYENK---------------ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred eeeceeEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 4566677765555 5999999999999999999998764 466666544332100 01
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ..++.|..+++ .+++.
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv--~lara 161 (251)
T PRK14270 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL--CIART 161 (251)
T ss_pred HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH--HHHHH
Confidence 11123332221 22333444443 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.. .+|+++++|||++++|+.+...+.+..+.+.. + ..+++.+||+..+.. ...|+.++
T Consensus 162 l~---~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~--------~tiiivsH~~~~~~~-~~d~v~~l 219 (251)
T PRK14270 162 IA---VKPDVILMDEPTSALDPISTLKIEDLMVELKK--E--------YTIVIVTHNMQQASR-VSDYTAFF 219 (251)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C--------CeEEEEEcCHHHHHH-hcCEEEEE
Confidence 22 48999999999999999998887765554321 1 467888888876543 33455444
No 303
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.4e-14 Score=121.55 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=84.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|...+ ..|.+.+.+.+.... ..
T Consensus 21 ~l~~vs~~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 21 ALYDITISIPKNRV---------------TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred eeeeeEEEECCCcE---------------EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 56667777665554 999999999999999999997642 256665544322110 01
Q ss_pred ccccccccCCCC---------------------------------------------------cCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPETR---------------------------------------------------DWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~~---------------------------------------------------~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|... .++.|..+++ .+++.
T Consensus 86 ~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~lara 163 (253)
T PRK14261 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL--CIART 163 (253)
T ss_pred hceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH--HHHHH
Confidence 112333333221 2233333333 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
.. .+|++++||||++++|++....+.+..+.+.. + ..+++.+|++..+.. ...|+.+
T Consensus 164 l~---~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~--------~tvii~sh~~~~~~~-~~d~v~~ 220 (253)
T PRK14261 164 LA---VNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E--------YTVIIVTHNMQQAAR-VSDYTGF 220 (253)
T ss_pred Hh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C--------ceEEEEEcCHHHHHh-hCCEEEE
Confidence 22 48999999999999999998887766554321 1 477888888877643 2344433
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.48 E-value=2.5e-14 Score=130.93 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=80.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCcc-c---ccccccccc--------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKA-V---SVIELYGVL-------------------- 102 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~~-~---~~~~l~g~~-------------------- 102 (233)
.+..|+.++|+||||||||||+++|+|...+ ..|.+.+.+.+... . ....-+|++
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~ 361 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILS 361 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHh
Confidence 3456667999999999999999999997653 35555443311000 0 000001111
Q ss_pred ----------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 103 ----------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 103 ----------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
+.....+|+|..+++ .++++.. .+|++++||||++++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~---~~p~lllLDEPt~gLD~~~ 436 (490)
T PRK10938 362 GFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA--LIVRALV---KHPTLLILDEPLQGLDPLN 436 (490)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCccccCCHHH
Confidence 111234555666666 4444443 5899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
...+.+..+.+...++ ..+++.+||+..+..
T Consensus 437 ~~~l~~~L~~l~~~~~--------~tviivsHd~~~~~~ 467 (490)
T PRK10938 437 RQLVRRFVDVLISEGE--------TQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHHHHHhcCC--------cEEEEEecchhhhhh
Confidence 9888876665543332 457777888877643
No 305
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1e-14 Score=122.35 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~~-----~~ 95 (233)
++++++|.+.++. .++|+||||||||||+++|+|... +..|.+.+.+.+.... ..
T Consensus 20 ~l~~is~~i~~Ge---------------~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 20 ILFDINLDIYKRE---------------VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 4566677765555 499999999999999999999875 2466665544321100 01
Q ss_pred ccccccccCCC----------------------------------------------------CcCchhHHHHHHHHHhc
Q psy12735 96 IELYGVLNPET----------------------------------------------------RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 96 ~~l~g~~~~~~----------------------------------------------------~~~~~gi~~~~~~~~~~ 123 (233)
...++++.|.. ..+++|..+++ .+++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~lar 162 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL--CIAR 162 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH--HHHH
Confidence 11223332221 12333333333 2222
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
... .+|+++++|||++++|+.+...+++..+.+. . + ..+++.+||+..+.
T Consensus 163 al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~--------~tiiiisH~~~~~~ 212 (251)
T PRK14244 163 AIA---VKPTMLLMDEPCSALDPVATNVIENLIQELK-K-N--------FTIIVVTHSMKQAK 212 (251)
T ss_pred HHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEeCCHHHHH
Confidence 222 4899999999999999999888776655432 1 2 57888888887553
No 306
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.4e-14 Score=120.67 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=79.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh--h---cCCCeEEeeeCCcc-----cccccccccccCCC-------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST--V---LGYPARTYTLNPKA-----VSVIELYGVLNPET------------- 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~--~---~~~~i~~~~~~~~~-----~~~~~l~g~~~~~~------------- 106 (233)
.+|+.++|+||||||||||+++|+|.+. + ..|.+.+.+.+... ......+|++.|..
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 115 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAY 115 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHh
Confidence 3445599999999999999999999875 2 35666554432210 00111233333221
Q ss_pred --------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 107 --------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 107 --------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
..+++|..+++ .+++... .+|+++++|||++++|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv--~laral~---~~p~llllDEPt~~LD~~~ 190 (259)
T PRK14274 116 GPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL--CIARALA---TNPDVLLMDEPTSALDPVS 190 (259)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCcccCCHHH
Confidence 22333444433 2232222 4899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
...+.+....+. . + ..+++.+||+..+.- ...|+.++
T Consensus 191 ~~~l~~~l~~~~-~-~--------~tiiivtH~~~~~~~-~~d~i~~l 227 (259)
T PRK14274 191 TRKIEELILKLK-E-K--------YTIVIVTHNMQQAAR-VSDQTAFF 227 (259)
T ss_pred HHHHHHHHHHHh-c-C--------CEEEEEEcCHHHHHH-hCCEEEEE
Confidence 888776554432 1 2 578888888875432 23444333
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=8.6e-15 Score=137.73 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=87.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee---------CCcc-ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL---------NPKA-VSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~---------~~~~-~~~ 95 (233)
++++++|.+.++.. ++|+||||||||||+|+|+|.+.+..|.+.+.+- .+.. .+.
T Consensus 16 ~l~~vs~~i~~Ge~---------------v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 16 LLDNATATINPGQK---------------VGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred eecCcEEEECCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 56777777766555 9999999999999999999998887777654321 0000 000
Q ss_pred c----------------------------------------------------ccccc----ccCCCCcCchhHHHHHHH
Q psy12735 96 I----------------------------------------------------ELYGV----LNPETRDWYDGLLSNIFR 119 (233)
Q Consensus 96 ~----------------------------------------------------~l~g~----~~~~~~~~~~gi~~~~~~ 119 (233)
. +.+|+ .+.....+|+|..+++
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv-- 158 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL-- 158 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH--
Confidence 0 00111 0112245778888888
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.++++.. .+|++++||||++++|+++...+.+....+ + ..+|+.+||...+.
T Consensus 159 ~LA~aL~---~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~---------~tviivsHd~~~l~ 210 (638)
T PRK10636 159 NLAQALI---CRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q---------GTLILISHDRDFLD 210 (638)
T ss_pred HHHHHHc---cCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C---------CeEEEEeCCHHHHH
Confidence 6666655 689999999999999999987766554332 1 36777777777654
No 308
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.3e-14 Score=122.41 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEeeeCCc-----cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYTLNPK-----AVSV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~~~~~-----~~~~ 95 (233)
++++++|.+.++. .++|+|+||||||||+++|+|.+.+. +|.+.+.+.+.. ....
T Consensus 22 il~~is~~i~~Ge---------------~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 22 ILEGVSMEIYQSK---------------VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EeeceEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 4666777766555 49999999999999999999998764 455544332210 0001
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.+.. ..+++|..+++ .+++.
T Consensus 87 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~lara 164 (261)
T PRK14258 87 RRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL--CIARA 164 (261)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH--HHHHH
Confidence 11122222221 22333444444 33332
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.. .+|++++||||++++|+++...+++....+....+ ..+++.+||+..+
T Consensus 165 l~---~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~--------~tiiivsH~~~~i 214 (261)
T PRK14258 165 LA---VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE--------LTMVIVSHNLHQV 214 (261)
T ss_pred Hh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC--------CEEEEEECCHHHH
Confidence 22 48999999999999999998887766554433223 5777778887654
No 309
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.47 E-value=3.2e-14 Score=144.72 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH-------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR------- 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~------- 119 (233)
++|+.++|+|+||||||||+++|.|++.+.+|.+.+++++.+.++.. +.+++++|++..|++++++|+--
T Consensus 1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sde 1389 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDE 1389 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHH
Confidence 44556999999999999999999999999999999988887665544 34677788877777777666620
Q ss_pred -----------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 120 -----------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 120 -----------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
.+|++. -.++++++||||++++|.++-..+.+..+.
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL---Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL---LRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH---HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 111111 138999999999999999987666555433
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
. .. +.++|..+|.++.+.-+ =.++.+++.
T Consensus 1467 ~-~~---------~~TvI~IAHRl~ti~~~----DrIlVld~G 1495 (1522)
T TIGR00957 1467 Q-FE---------DCTVLTIAHRLNTIMDY----TRVIVLDKG 1495 (1522)
T ss_pred H-cC---------CCEEEEEecCHHHHHhC----CEEEEEECC
Confidence 2 12 25666667766543332 245555543
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.47 E-value=1.5e-14 Score=134.17 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=89.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------eCCc---ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--------LNPK---AVS 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--------~~~~---~~~ 94 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|.+.+.+|.+.+.. ..+. ..+
T Consensus 22 il~~vs~~i~~Ge~---------------~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 86 (556)
T PRK11819 22 ILKDISLSFFPGAK---------------IGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKT 86 (556)
T ss_pred eeeCceEEECCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCc
Confidence 56778888766665 999999999999999999999988877765421 1110 000
Q ss_pred cccc-------------------------------------------------------------ccc--ccCCCCcCch
Q psy12735 95 VIEL-------------------------------------------------------------YGV--LNPETRDWYD 111 (233)
Q Consensus 95 ~~~l-------------------------------------------------------------~g~--~~~~~~~~~~ 111 (233)
..+. +|. .+.....+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 0000 000 1122346778
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
|..+++ .++++.. .+|++++||||++++|++....+.+..+.+ . ..+|+.+||+..+..
T Consensus 167 Gqkqrv--~la~al~---~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~---------~tviiisHd~~~~~~ 225 (556)
T PRK11819 167 GERRRV--ALCRLLL---EKPDMLLLDEPTNHLDAESVAWLEQFLHDY---P---------GTVVAVTHDRYFLDN 225 (556)
T ss_pred HHHHHH--HHHHHHh---CCCCEEEEcCCCCcCChHHHHHHHHHHHhC---C---------CeEEEEeCCHHHHHh
Confidence 888888 6666554 689999999999999999988877654433 1 267777888776654
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.1e-14 Score=134.46 Aligned_cols=123 Identities=13% Similarity=0.183 Sum_probs=83.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------e--CC-----ccccccc-----------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------L--NP-----KAVSVIE----------------- 97 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~--~~-----~~~~~~~----------------- 97 (233)
.+..|+.++|+||||||||||+++|+|.+.+..|.+.+.+ + .+ ...+..+
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 420 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG 420 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH
Confidence 3455666999999999999999999999887777664321 0 00 0001111
Q ss_pred ---cccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEcc
Q psy12735 98 ---LYGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170 (233)
Q Consensus 98 ---l~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~ 170 (233)
.+|. .+.....+|+|..+++ .++++.. .+|++++||||++++|+.+...+.+..+.+ +
T Consensus 421 ~l~~~~l~~~~~~~~~~~LSgGq~qrv--~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~------- 485 (530)
T PRK15064 421 TLGRLLFSQDDIKKSVKVLSGGEKGRM--LFGKLMM---QKPNVLVMDEPTNHMDMESIESLNMALEKY---E------- 485 (530)
T ss_pred HHHHcCCChhHhcCcccccCHHHHHHH--HHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---C-------
Confidence 0111 1223456778888888 5665554 589999999999999999988887765432 1
Q ss_pred CcceEEEEeCCcCccCh
Q psy12735 171 AHCQLLFEVGDLQYASP 187 (233)
Q Consensus 171 ~~~~~i~et~dl~~~sP 187 (233)
..+|+.+||+..+..
T Consensus 486 --~tvi~vsHd~~~~~~ 500 (530)
T PRK15064 486 --GTLIFVSHDREFVSS 500 (530)
T ss_pred --CEEEEEeCCHHHHHH
Confidence 367888888776543
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.2e-14 Score=134.25 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=94.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee---e-----CC---cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT---L-----NP---KAVS 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~---~-----~~---~~~~ 94 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+..|.+.+.+ + .+ ...+
T Consensus 16 il~~vsl~i~~Ge~---------------~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 16 LFENISVKFGGGNR---------------YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred eEeCCEEEECCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 56778888766665 999999999999999999999888777765431 0 00 0000
Q ss_pred c------------------------------------------------------cc---ccccc----cCCCCcCchhH
Q psy12735 95 V------------------------------------------------------IE---LYGVL----NPETRDWYDGL 113 (233)
Q Consensus 95 ~------------------------------------------------------~~---l~g~~----~~~~~~~~~gi 113 (233)
. .+ .+|.- +.....+|+|.
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 0 00 01211 12235678888
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcc
Q psy12735 114 LSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRA 193 (233)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~ 193 (233)
.+++ .++++.. .+|++++||||++++|+++...+.+..+. ....+|+.+||+..+..- ..
T Consensus 161 ~qrv--~lA~aL~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------------~~~tiiivsHd~~~~~~~-~d-- 220 (530)
T PRK15064 161 KLRV--LLAQALF---SNPDILLLDEPTNNLDINTIRWLEDVLNE------------RNSTMIIISHDRHFLNSV-CT-- 220 (530)
T ss_pred HHHH--HHHHHHh---cCCCEEEEcCCCcccCHHHHHHHHHHHHh------------CCCeEEEEeCCHHHHHhh-cc--
Confidence 8888 6666554 58999999999999999998887665421 135788888888766432 22
Q ss_pred eEEEECCCCC
Q psy12735 194 GMVYVDPINL 203 (233)
Q Consensus 194 ~~v~~~~~~~ 203 (233)
.++.++...+
T Consensus 221 ~i~~l~~g~i 230 (530)
T PRK15064 221 HMADLDYGEL 230 (530)
T ss_pred eEEEEeCCEE
Confidence 3445554433
No 313
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=2.8e-14 Score=109.95 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=86.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee--CC------cc-cccccccccccCCCCc------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL--NP------KA-VSVIELYGVLNPETRD------------ 108 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~--~~------~~-~~~~~l~g~~~~~~~~------------ 108 (233)
..|+.++++||||+|||||++.|+-+-.+.+|...+.+- +. ++ ...++-.|++-|..+.
T Consensus 26 ~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlie 105 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIE 105 (242)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHh
Confidence 346679999999999999999998665555555433211 00 00 0011113333333333
Q ss_pred ------------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 109 ------------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 109 ------------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.++|..+++ .++++.. .+|..++||||++++|+|..+++
T Consensus 106 ap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrv--aiaralm---mkpqvllfdeptaaldpeitaqv 180 (242)
T COG4161 106 APCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRV--AIARALM---MEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred hhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhH--HHHHHHh---cCCcEEeecCcccccCHHHHHHH
Confidence 445555555 4444432 69999999999999999999988
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+..+.+.-.+. +-++.||....|... ...+|||+...+
T Consensus 181 v~iikel~~tgi---------tqvivthev~va~k~---as~vvyme~g~i 219 (242)
T COG4161 181 VSIIKELAETGI---------TQVIVTHEVEVARKT---ASRVVYMENGHI 219 (242)
T ss_pred HHHHHHHHhcCc---------eEEEEEeehhHHHhh---hhheEeeecCee
Confidence 887766554433 444556666655443 357889987544
No 314
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=3.8e-14 Score=121.18 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCccc-----ccccccccccCCC------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKAV-----SVIELYGVLNPET------------ 106 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~~-----~~~~l~g~~~~~~------------ 106 (233)
+..|+.++|+||||||||||+++|+|... +..|.+.+.+.+.... .....++++.|..
T Consensus 62 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 141 (286)
T PRK14275 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIA 141 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHH
Confidence 45566699999999999999999999753 2667666544322100 0111233333322
Q ss_pred ---------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 107 ---------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 107 ---------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
...++|..+++ .+++... .+|++++||||++++|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv--~LAraL~---~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 142 YGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL--CVARTLA---VEPEILLLDEPTSALDPK 216 (286)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCccCCHH
Confidence 22334444444 3333332 489999999999999999
Q ss_pred hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 148 NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 148 ~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
....+++..+.+. .+ ..+|+.+||+..+. ....|+.++
T Consensus 217 ~~~~l~~~L~~~~--~~--------~tvIivsH~~~~~~-~~~d~i~~L 254 (286)
T PRK14275 217 ATAKIEDLIQELR--GS--------YTIMIVTHNMQQAS-RVSDYTMFF 254 (286)
T ss_pred HHHHHHHHHHHHh--cC--------CeEEEEeCCHHHHH-HhCCEEEEE
Confidence 9888877655432 11 46888888888753 333444433
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.47 E-value=1.6e-14 Score=135.91 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=86.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee--------CC-cc--cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL--------NP-KA--VS 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~--------~~-~~--~~ 94 (233)
++++++|.+.++. .++|+||||||||||+++|+|...+..|.+.+.+- .+ .. ..
T Consensus 18 il~~is~~i~~Ge---------------~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 18 LLDNAELHIEDNE---------------RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred eEeCcEEEECCCC---------------EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 5667777776655 49999999999999999999998888777654320 00 00 00
Q ss_pred ccc-----------------------------------------------------------cccc-ccCCCCcCchhHH
Q psy12735 95 VIE-----------------------------------------------------------LYGV-LNPETRDWYDGLL 114 (233)
Q Consensus 95 ~~~-----------------------------------------------------------l~g~-~~~~~~~~~~gi~ 114 (233)
..+ .+|+ .+.....+|+|..
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 000 0011 0112346778888
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 115 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+++ .++++.. .+|++++||||++++|+++...+.+..+.+ . ..+|+.+||...+.
T Consensus 163 qRv--~LAraL~---~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~---------~tvlivsHd~~~l~ 217 (635)
T PRK11147 163 RKA--ALGRALV---SNPDVLLLDEPTNHLDIETIEWLEGFLKTF---Q---------GSIIFISHDRSFIR 217 (635)
T ss_pred HHH--HHHHHHh---cCCCEEEEcCCCCccCHHHHHHHHHHHHhC---C---------CEEEEEeCCHHHHH
Confidence 888 6666554 689999999999999999988777665443 1 26677777766553
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.46 E-value=5e-14 Score=142.42 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 86 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~ 86 (233)
.+.+|+.++|+||||||||||+++|+|++.+..|.+.+.
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~ 445 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEe
Confidence 345666799999999999999999999999999988873
No 317
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=1.5e-14 Score=128.19 Aligned_cols=133 Identities=13% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~ 101 (233)
++++++|.+.++.+ .+|+|.||+|||||+++|.|+|.|+.|.+.+.+....--+. ..-+|+
T Consensus 19 And~V~l~v~~GeI---------------HaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 19 ANDDVSLSVKKGEI---------------HALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred ecCceeeeecCCcE---------------EEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 45677888777666 99999999999999999999999999988775533211110 011233
Q ss_pred ccCCC--------------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 102 LNPET--------------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 102 ~~~~~--------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
+.|.. .+.+=|..|++ ++-+.+- ..
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRV--EIlKaLy---r~ 158 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRV--EILKALY---RG 158 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHH--HHHHHHh---cC
Confidence 32211 11222334433 2222221 38
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEE
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFE 178 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~e 178 (233)
+++++|||||+-+.+.....++...+.+.-.+..+|.++|...-+.+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99999999999999988888888877777666655555555444443
No 318
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=4.2e-14 Score=118.58 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=74.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh--h---cCCCeEEeeeCCcc-----cccccccccccCC--------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST--V---LGYPARTYTLNPKA-----VSVIELYGVLNPE-------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~--~---~~~~i~~~~~~~~~-----~~~~~l~g~~~~~-------------- 105 (233)
..|+.++|+||||||||||+++|+|... + ..|.+.+.+.+... ......++++.|.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~ 108 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY 108 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHH
Confidence 3445599999999999999999999764 3 25655544332110 0001112222222
Q ss_pred -------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 106 -------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 106 -------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
...+++|..+++ .+++... .+|++++||||++++|..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv--~laral~---~~p~llllDEPt~~LD~~~ 183 (252)
T PRK14255 109 GLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV--CIARVLA---VKPDVILLDEPTSALDPIS 183 (252)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCccCCHHH
Confidence 123344444444 3333332 4899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+.+..+.+.- +..+++.+||+..+
T Consensus 184 ~~~l~~~l~~~~~----------~~tii~vsH~~~~~ 210 (252)
T PRK14255 184 STQIENMLLELRD----------QYTIILVTHSMHQA 210 (252)
T ss_pred HHHHHHHHHHHHh----------CCEEEEEECCHHHH
Confidence 8887765544321 14677778887654
No 319
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.7e-14 Score=122.72 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=81.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCccc----ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKAV----SVI 96 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~~----~~~ 96 (233)
++++++|.+.++. .++|+||||||||||+++|+|.+.+ ..|.+.+.+.+.... ...
T Consensus 36 il~~vs~~i~~Ge---------------~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 36 VLDQVSMGFPARA---------------VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EeeeeEEEEcCCc---------------EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 4566666665555 5999999999999999999999874 456655533221100 001
Q ss_pred cccccccCC---------------------------------------------------CCcCchhHHHHHHHHHhcCC
Q psy12735 97 ELYGVLNPE---------------------------------------------------TRDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 97 ~l~g~~~~~---------------------------------------------------~~~~~~gi~~~~~~~~~~~~ 125 (233)
..++++.|. ...+++|..+++ .+++..
T Consensus 101 ~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl--~LAral 178 (276)
T PRK14271 101 RRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL--CLARTL 178 (276)
T ss_pred hheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH--HHHHHH
Confidence 112222221 123444555544 333333
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
. .+|+++++|||++++|..+...+++..+.+.- ...+++.+||+..+.
T Consensus 179 ~---~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----------~~tiiivsH~~~~~~ 226 (276)
T PRK14271 179 A---VNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----------RLTVIIVTHNLAQAA 226 (276)
T ss_pred h---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----------CCEEEEEeCCHHHHH
Confidence 2 48999999999999999998877665444321 257788888887553
No 320
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.4e-14 Score=119.37 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=81.6
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc--c---ccccccccccCC--------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA--V---SVIELYGVLNPE-------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~--~---~~~~l~g~~~~~-------------- 105 (233)
..|+.++|+||||||||||+++|+|.+.+ ..|.+.+.+.+... . .....++++.|.
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 128 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVY 128 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHH
Confidence 44556999999999999999999998763 56666554332210 0 001112222222
Q ss_pred -------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 106 -------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 106 -------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
...+++|..+++ .+++... .+|+++++|||++++|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv--~laral~---~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 129 GLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL--VIARAIA---IEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH--HHHHHHH---CCCCEEEEeCCcccCCHHH
Confidence 123344444444 3333332 4899999999999999999
Q ss_pred HHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 149 MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 149 l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
...+.+..+.+.. + ..+++.+|++..+.. +..|+.++.
T Consensus 204 ~~~l~~~L~~~~~--~--------~tiiivtH~~~~~~~-~~d~i~~l~ 241 (272)
T PRK14236 204 TLKIEELITELKS--K--------YTIVIVTHNMQQAAR-VSDYTAFMY 241 (272)
T ss_pred HHHHHHHHHHHHh--C--------CeEEEEeCCHHHHHh-hCCEEEEEE
Confidence 8887776554421 2 467888888876543 334554443
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.46 E-value=2.5e-14 Score=132.70 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=88.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------eCCc---ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--------LNPK---AVS 94 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--------~~~~---~~~ 94 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|...+..|.+.+.. ..+. ..+
T Consensus 20 il~~is~~i~~Ge~---------------~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 20 ILKDISLSFFPGAK---------------IGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKT 84 (552)
T ss_pred eecCceEEECCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCc
Confidence 56777787766665 999999999999999999999988777765421 0110 000
Q ss_pred cccc-------------------------------------------------------------ccc--ccCCCCcCch
Q psy12735 95 VIEL-------------------------------------------------------------YGV--LNPETRDWYD 111 (233)
Q Consensus 95 ~~~l-------------------------------------------------------------~g~--~~~~~~~~~~ 111 (233)
..+. +|. .+.....+|+
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 0000 000 1122346778
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
|..+++ .++++.. .+|++++||||++++|++....+.+..+.+ . ..+|+.+||+..+..
T Consensus 165 Gqkqrv--~la~al~---~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~---------~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 165 GERRRV--ALCRLLL---SKPDMLLLDEPTNHLDAESVAWLEQHLQEY---P---------GTVVAVTHDRYFLDN 223 (552)
T ss_pred HHHHHH--HHHHHHh---cCCCEEEEcCCCCCCChHHHHHHHHHHHhC---C---------CeEEEEeCCHHHHHh
Confidence 888888 6666554 689999999999999999988877654432 1 267777787776543
No 322
>PTZ00243 ABC transporter; Provisional
Probab=99.45 E-value=4.6e-14 Score=143.60 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcCchhHHHHHHH-----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDWYDGLLSNIFR----- 119 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~~~gi~~~~~~----- 119 (233)
.+..|+.|+|+|+||||||||+++|.|++.+.+|.+.+++.+.+.++. ++.+++++|++..|++++.+|+-.
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s 1411 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS 1411 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCC
Confidence 445666799999999999999999999999999999999888766553 345788888888887777766621
Q ss_pred -----HHhc-------------------------CCCCCC----------CC-ceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 120 -----AVNK-------------------------PLDPGS----------KE-RKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 120 -----~~~~-------------------------~~~~~~----------~~-~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+.++ .++|++ .+ +++++|||+++++|.++-..+.+..+.
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0000 001111 23 799999999999999987776554332
Q ss_pred ccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
. .. +.++|..+|.++.+
T Consensus 1492 ~-~~---------~~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1492 A-FS---------AYTVITIAHRLHTV 1508 (1560)
T ss_pred H-CC---------CCEEEEEeccHHHH
Confidence 1 12 25666666766433
No 323
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.45 E-value=5.5e-14 Score=112.86 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=87.5
Q ss_pred HHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---ccc
Q psy12735 25 TVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---YGV 101 (233)
Q Consensus 25 ~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~g~ 101 (233)
.++.++++.+.++.+ |.|+|.|||||||++++++|.+.+.+|++.+.+.+....+..+. ++.
T Consensus 20 ~~l~~~sL~I~~g~F---------------vtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~lar 84 (263)
T COG1101 20 RALNGLSLEIAEGDF---------------VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLAR 84 (263)
T ss_pred HHHhcCceeecCCce---------------EEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHH
Confidence 467888888777666 99999999999999999999999999999887766533222211 111
Q ss_pred ccCCC---------------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 102 LNPET---------------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 102 ~~~~~---------------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
+.|++ ..+|+|.+|.+ .+..+
T Consensus 85 VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal--sL~MA 162 (263)
T COG1101 85 VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL--SLLMA 162 (263)
T ss_pred HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH--HHHHH
Confidence 11211 12333444433 22221
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
. -+.|++++|||-++++|+.....+++.-..+.-. ++.+-++.||++..|
T Consensus 163 t---l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~--------~klTtlMVTHnm~~A 212 (263)
T COG1101 163 T---LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--------HKLTTLMVTHNMEDA 212 (263)
T ss_pred h---cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh--------cCCceEEEeccHHHH
Confidence 1 1489999999999999999888777754333222 235556666666654
No 324
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.7e-14 Score=118.37 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=87.8
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCcc--c---cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPKA--V---SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~~--~---~~ 95 (233)
+++++++.+.++. .++|+|+||||||||+|+|+|.+.+ ..|.+.+.+.+... . ..
T Consensus 22 il~~isl~i~~Ge---------------~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 22 AIEGISMDIYRNK---------------VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eecceEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 4566777765555 5999999999999999999998764 25666554332110 0 00
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
...++++.|.. ..+++|..+++ .++++
T Consensus 87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~lara 164 (259)
T PRK14260 87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL--CIARA 164 (259)
T ss_pred hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH--HHHHH
Confidence 11122222221 22334444444 33333
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.. .+|++++||||++++|+.+...+.+..+.+. .+ ..+++.+|++..+.. ...|..++.
T Consensus 165 l~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~--------~tiii~tH~~~~i~~-~~d~i~~l~ 223 (259)
T PRK14260 165 LA---IKPKVLLMDEPCSALDPIATMKVEELIHSLR--SE--------LTIAIVTHNMQQATR-VSDFTAFFS 223 (259)
T ss_pred Hh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC--------CEEEEEeCCHHHHHH-hcCeEEEEe
Confidence 32 4899999999999999999888777655432 11 578888888887643 345655554
No 325
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.45 E-value=3.1e-14 Score=131.16 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe-ee---CCccc------ccccccccccCC------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY-TL---NPKAV------SVIELYGVLNPE------------ 105 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~-~~---~~~~~------~~~~l~g~~~~~------------ 105 (233)
.+.+|+.++|+||||||||||+++|+|...+..|.+.+. +- +.... .....+|++.|.
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 455677799999999999999999999988777777663 21 00000 000112222221
Q ss_pred ---------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 106 ---------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 106 ---------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
...+|+|..+++ .++++.. .+|+++++|||++++|+
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv--~laral~---~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV--ALAQVLI---KEPRIVILDEPTGTMDP 460 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCH
Confidence 234455555555 4444333 48999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.....+++..+.+....| ..+++.+||+..+..
T Consensus 461 ~~~~~l~~~l~~l~~~~g--------~tvi~vsHd~~~~~~ 493 (520)
T TIGR03269 461 ITKVDVTHSILKAREEME--------QTFIIVSHDMDFVLD 493 (520)
T ss_pred HHHHHHHHHHHHHHHHcC--------cEEEEEeCCHHHHHH
Confidence 999888877655443323 578888888887643
No 326
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4.9e-14 Score=121.55 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=78.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCccc-----ccccccccccCC-------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKAV-----SVIELYGVLNPE------------- 105 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~~-----~~~~l~g~~~~~------------- 105 (233)
+..|+.++|+||||||||||+++|+|.+. +..|.+.+.+.+.... .....++++.|.
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 147 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIS 147 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHH
Confidence 34566699999999999999999999875 3566665544322100 001112222221
Q ss_pred --------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEE
Q psy12735 106 --------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYI 135 (233)
Q Consensus 106 --------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l 135 (233)
...+++|..+++ .++++.. .+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv--~LAraL~---~~p~lL 222 (305)
T PRK14264 148 YGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRL--CIARCLA---VDPEVI 222 (305)
T ss_pred hHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHH--HHHHHHh---cCCCEE
Confidence 123444555555 3344333 589999
Q ss_pred EEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 136 LFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 136 vlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+||||++++|+.....+.+..+.+.. +..+++.+||+..+.
T Consensus 223 LLDEPtsgLD~~~~~~l~~~L~~~~~----------~~tiiivtH~~~~i~ 263 (305)
T PRK14264 223 LMDEPASALDPIATSKIEDLIEELAE----------EYTVVVVTHNMQQAA 263 (305)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhc----------CCEEEEEEcCHHHHH
Confidence 99999999999998888776554432 146777788887653
No 327
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.3e-13 Score=108.60 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=75.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---------------------cc------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---------------------VI------------ 96 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---------------------~~------------ 96 (233)
..|+.+.|.||||||||||+++|+|+..+.+|.+.+.+.+..... ..
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~ 105 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS 105 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC
Confidence 344459999999999999999999999999999887654331111 00
Q ss_pred -------------cccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccC
Q psy12735 97 -------------ELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 163 (233)
Q Consensus 97 -------------~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~ 163 (233)
.+.|+.+-.....|.|+..++ .+++.-. .+.|-|+ +|||++++|.+....+-.....-+-.+
T Consensus 106 ~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRv--AlArL~l--s~~pLWi-LDEP~taLDk~g~a~l~~l~~~H~~~G 180 (209)
T COG4133 106 GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRV--ALARLWL--SPAPLWI-LDEPFTALDKEGVALLTALMAAHAAQG 180 (209)
T ss_pred CchhhHHHHHHHcCcccccccchhhcchhHHHHH--HHHHHHc--CCCCcee-ecCcccccCHHHHHHHHHHHHHHhcCC
Confidence 011111111234556776666 5555443 2456665 699999999988655433222112233
Q ss_pred ceEEEccCcceEEEEeCCcCccChhh
Q psy12735 164 GERIRLLAHCQLLFEVGDLQYASPAT 189 (233)
Q Consensus 164 g~~i~~~~~~~~i~et~dl~~~sPa~ 189 (233)
| -++..||....+.|+.
T Consensus 181 G---------iVllttHq~l~~~~a~ 197 (209)
T COG4133 181 G---------IVLLTTHQPLPIASAQ 197 (209)
T ss_pred C---------EEEEecCCccCCCccc
Confidence 4 3444566655555553
No 328
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.5e-14 Score=122.37 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=79.1
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCcc-----cccccccccccCCCCc---------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKA-----VSVIELYGVLNPETRD--------- 108 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~-----~~~~~l~g~~~~~~~~--------- 108 (233)
.+..|+.++|+||||||||||+++|+|... +..|.+.+.+.+... ......++++.|.+..
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi 183 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNV 183 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHH
Confidence 345667799999999999999999999875 345666554443211 0111223333333322
Q ss_pred ------------------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 109 ------------------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 109 ------------------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
+++|..+++ .++++.. .+|++++||||++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl--~LARAl~---~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 184 AYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL--CIARAIA---LEPEVLLMDEPTSALDP 258 (329)
T ss_pred HhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH--HHHHHHH---hCCCEEEEeCCcccCCH
Confidence 333444444 3333222 48999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+....+.+..+.+. . +.++++.+|++..+.
T Consensus 259 ~~~~~i~~~i~~l~-~---------~~Tii~iTH~l~~i~ 288 (329)
T PRK14257 259 IATAKIEELILELK-K---------KYSIIIVTHSMAQAQ 288 (329)
T ss_pred HHHHHHHHHHHHHh-c---------CCEEEEEeCCHHHHH
Confidence 98877666544332 1 257888888887764
No 329
>PLN03211 ABC transporter G-25; Provisional
Probab=99.44 E-value=1.9e-14 Score=135.67 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=79.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc--CCCeEEeeeCCccccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSVIELYGVLN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~--~~~i~~~~~~~~~~~~~~l~g~~~ 103 (233)
+++++++.+.++.+ ++|+||||||||||+++|+|...+. .|.+.+++.+... ......|++.
T Consensus 83 iL~~vs~~i~~Ge~---------------~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~ 146 (659)
T PLN03211 83 ILNGVTGMASPGEI---------------LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVT 146 (659)
T ss_pred eeeCCEEEEECCEE---------------EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEEC
Confidence 56677777766554 9999999999999999999987653 5666554432210 0011123333
Q ss_pred CCC-------------------------------------------------------CcCchhHHHHHHHHHhcCCCCC
Q psy12735 104 PET-------------------------------------------------------RDWYDGLLSNIFRAVNKPLDPG 128 (233)
Q Consensus 104 ~~~-------------------------------------------------------~~~~~gi~~~~~~~~~~~~~~~ 128 (233)
|+. ...++|..+++ .+++...
T Consensus 147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv--~ia~aL~-- 222 (659)
T PLN03211 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRV--SIAHEML-- 222 (659)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHH--HHHHHHH--
Confidence 221 12333444443 2222222
Q ss_pred CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 129 SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 129 ~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
.+|++++||||++++|..+...+.+..+.+...+ .++++.+|+++
T Consensus 223 -~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g---------~TvI~~sH~~~ 267 (659)
T PLN03211 223 -INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG---------KTIVTSMHQPS 267 (659)
T ss_pred -hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC---------CEEEEEecCCC
Confidence 4899999999999999999888887766554333 34555555544
No 330
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=9.1e-14 Score=116.43 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=82.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-----hcCCCeEEeeeCCccc-----cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-----VLGYPARTYTLNPKAV-----SV 95 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-----~~~~~i~~~~~~~~~~-----~~ 95 (233)
+++++++.+.++. .++|+||||||||||+++|+|... +..|.+.+.+.+.... ..
T Consensus 18 ~l~~~s~~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 18 ILKNVNLDIPKNS---------------VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4566666665544 599999999999999999999753 2566666555432110 01
Q ss_pred ccccccccCCC---------------------------------------------------CcCchhHHHHHHHHHhcC
Q psy12735 96 IELYGVLNPET---------------------------------------------------RDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 96 ~~l~g~~~~~~---------------------------------------------------~~~~~gi~~~~~~~~~~~ 124 (233)
....+++.|.. ..+++|..+++ .++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv--~lara 160 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL--CIART 160 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH--HHHHH
Confidence 11233333222 12333333333 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.. .+|+++++|||++++|+.+...+.+..+.+. . + ..+++.+|++..+..
T Consensus 161 l~---~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~--------~tiii~sh~~~~~~~ 210 (250)
T PRK14266 161 IA---VSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-D--------YTIVIVTHNMQQATR 210 (250)
T ss_pred HH---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C--------CeEEEEECCHHHHHh
Confidence 22 4899999999999999999888776655432 1 2 577888888876643
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.43 E-value=2.2e-14 Score=134.99 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=80.6
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe--------e-----eCCcccccc------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY--------T-----LNPKAVSVI------------------ 96 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~--------~-----~~~~~~~~~------------------ 96 (233)
.+..|+.++|+||||||||||+++|+|.+.+..|.+.+. . +++. .+..
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~-~tv~e~l~~~~~~~~~~~~~~~ 419 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPE-KTVMDNLAEGKQEVMVNGRPRH 419 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCC-CCHHHHHHhhcccccccchHHH
Confidence 345666799999999999999999999988777765431 0 0000 0000
Q ss_pred --cc---ccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEE
Q psy12735 97 --EL---YGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERI 167 (233)
Q Consensus 97 --~l---~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i 167 (233)
++ +++ .+.....+|+|..+++ .++++.. .+|++++||||++++|+.+...+.+..+.+ +
T Consensus 420 ~~~~l~~~~l~~~~~~~~~~~LSgGekqRl--~la~al~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~---- 487 (635)
T PRK11147 420 VLGYLQDFLFHPKRAMTPVKALSGGERNRL--LLARLFL---KPSNLLILDEPTNDLDVETLELLEELLDSY---Q---- 487 (635)
T ss_pred HHHHHHhcCCCHHHHhChhhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---C----
Confidence 00 111 1112346777888888 5555554 589999999999999999987776654432 2
Q ss_pred EccCcceEEEEeCCcCccC
Q psy12735 168 RLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 168 ~~~~~~~~i~et~dl~~~s 186 (233)
..+|+.+||...+.
T Consensus 488 -----~tvi~vSHd~~~~~ 501 (635)
T PRK11147 488 -----GTVLLVSHDRQFVD 501 (635)
T ss_pred -----CeEEEEECCHHHHH
Confidence 36777778776653
No 332
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=2.2e-14 Score=146.81 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=83.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--cccccccccccCC-------------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--VSVIELYGVLNPE------------------- 105 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~~~------------------- 105 (233)
-.+.+|+.++|+|||||||||++|+|+|...+..|.+.+.+.+... ....+.+|+..|.
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence 3456788899999999999999999999999888888775543211 0011123333332
Q ss_pred ----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 106 ----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 106 ----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
...+++|..+++ .+|++.. .+|++++||||++++|+.....+.+..+
T Consensus 2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRL--slA~ALi---~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKL--STAIALI---GCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 224455555555 3444333 4899999999999999999988887665
Q ss_pred cccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+... | ..+|+.+|++..+
T Consensus 2115 ~l~~~-g--------~TIILtTH~mee~ 2133 (2272)
T TIGR01257 2115 SIIRE-G--------RAVVLTSHSMEEC 2133 (2272)
T ss_pred HHHhC-C--------CEEEEEeCCHHHH
Confidence 54333 2 4556666666544
No 333
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=9.8e-14 Score=117.30 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=84.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh-----cCCCeEEeeeCCc----cc---
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV-----LGYPARTYTLNPK----AV--- 93 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-----~~~~i~~~~~~~~----~~--- 93 (233)
+++++++.+.+ |+.++|+|+||||||||+++|+|...+ ..|.+.+.+.+.. ..
T Consensus 31 vl~~vs~~i~~---------------Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 31 ALKNINMMVHE---------------KQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred eeeeeEEEEcC---------------CcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 56666666655 445999999999999999999998763 4566655432211 00
Q ss_pred ccccccccccCCCC---------------------------------------------------cCchhHHHHHHHHHh
Q psy12735 94 SVIELYGVLNPETR---------------------------------------------------DWYDGLLSNIFRAVN 122 (233)
Q Consensus 94 ~~~~l~g~~~~~~~---------------------------------------------------~~~~gi~~~~~~~~~ 122 (233)
.....++++.+... .++.|..+++ .++
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv--~la 173 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL--CIA 173 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH--HHH
Confidence 01112333333221 2233333333 222
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++.. .+|+++++|||++++|......+.+..+.+.. ...+++.+|++..+.. ...|+.++
T Consensus 174 ral~---~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~----------~~tiiivth~~~~~~~-~~d~i~~l 233 (265)
T PRK14252 174 RALA---TDPEILLFDEPTSALDPIATASIEELISDLKN----------KVTILIVTHNMQQAAR-VSDYTAYM 233 (265)
T ss_pred HHHH---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh----------CCEEEEEecCHHHHHH-hCCEEEEE
Confidence 2222 48999999999999999998887776554321 2577888888876533 23444433
No 334
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.43 E-value=9.3e-14 Score=118.46 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=79.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee----eC------Ccc----------cc---cccc---ccc--
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT----LN------PKA----------VS---VIEL---YGV-- 101 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~----~~------~~~----------~~---~~~l---~g~-- 101 (233)
..|+.++|+||||||||||+++|+|.+++..|.+.+.+ +. +.. .. ..+. .+.
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~ 140 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEE 140 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHH
Confidence 34555999999999999999999999988887765421 00 000 00 0000 010
Q ss_pred -c---c--------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc-ccccccCceEEE
Q psy12735 102 -L---N--------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN-KILTLANGERIR 168 (233)
Q Consensus 102 -~---~--------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~-~~l~l~~g~~i~ 168 (233)
+ . ......++|..+++ .+++... .+|+++++|||++++|++....+++.. ..+. .
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~qrv--~lAraL~---~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~----- 208 (282)
T cd03291 141 DITKFPEKDNTVLGEGGITLSGGQRARI--SLARAVY---KDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--A----- 208 (282)
T ss_pred HHHhccccccceecCCCCcCCHHHHHHH--HHHHHHh---cCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--C-----
Confidence 0 0 01236788888888 5555554 589999999999999999887776532 2221 1
Q ss_pred ccCcceEEEEeCCcCccC
Q psy12735 169 LLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~s 186 (233)
+..+++.+||+..+.
T Consensus 209 ---~~tIiiisH~~~~~~ 223 (282)
T cd03291 209 ---NKTRILVTSKMEHLK 223 (282)
T ss_pred ---CCEEEEEeCChHHHH
Confidence 257788888888763
No 335
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.43 E-value=8.9e-14 Score=130.52 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=88.6
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeCCcccccccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLNPKAVSVIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~~~~~~~~~l~g~~ 102 (233)
+++++++.+.+|.+ ++|+||||||||||+++|+|...+. .|.+.+++........++..|++
T Consensus 40 iL~~vs~~i~~Ge~---------------~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 40 LLKNVSGVAKPGEL---------------LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred cccCCEEEEeCCeE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceee
Confidence 56667777666554 9999999999999999999987653 45666655432211222334444
Q ss_pred cCCCCc--------------------------------------------------------CchhHHHHHHHHHhcCCC
Q psy12735 103 NPETRD--------------------------------------------------------WYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 103 ~~~~~~--------------------------------------------------------~~~gi~~~~~~~~~~~~~ 126 (233)
.|+... .++|..+++ .+++...
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv--sia~aL~ 182 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL--AFASELL 182 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH--HHHHHHH
Confidence 443322 233333333 2222221
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
.+|+++++|||++++|......+++..+.+... | ..+++.+|+++..-.....|+.+
T Consensus 183 ---~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g--------~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 183 ---TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-G--------KTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred ---cCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCCCHHHHHHhceEEE
Confidence 389999999999999999998888877665433 3 56777777775333334445533
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.43 E-value=3.3e-14 Score=134.94 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=82.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------eCC-cccc--------------------cc--
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--------LNP-KAVS--------------------VI-- 96 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--------~~~-~~~~--------------------~~-- 96 (233)
.+..|+.++|+||||||||||+|+|+|...+..|.+.+.. ..+ ...+ ..
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 610 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 610 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence 4456677999999999999999999999988777664311 000 0000 00
Q ss_pred -ccccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccC
Q psy12735 97 -ELYGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLA 171 (233)
Q Consensus 97 -~l~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~ 171 (233)
+.+|. .++....+|+|..+++ .++++.. .+|++++||||++++|+.+...+++..... +|
T Consensus 611 L~~~gl~~~~~~~~~~~LSgGqkqRv--aLAraL~---~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g------- 675 (718)
T PLN03073 611 LGSFGVTGNLALQPMYTLSGGQKSRV--AFAKITF---KKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG------- 675 (718)
T ss_pred HHHCCCChHHhcCCccccCHHHHHHH--HHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-------
Confidence 01222 1223457888999998 6666554 589999999999999999988876653321 12
Q ss_pred cceEEEEeCCcCccC
Q psy12735 172 HCQLLFEVGDLQYAS 186 (233)
Q Consensus 172 ~~~~i~et~dl~~~s 186 (233)
.+|+.+||+..+.
T Consensus 676 --tvIivSHd~~~i~ 688 (718)
T PLN03073 676 --GVLMVSHDEHLIS 688 (718)
T ss_pred --EEEEEECCHHHHH
Confidence 5777777777654
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.42 E-value=3.6e-14 Score=131.62 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=83.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee-------------eCCccccc-------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT-------------LNPKAVSV------------------- 95 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~-------------~~~~~~~~------------------- 95 (233)
.+..|+.++|+||||||||||+++|+|...+..|.+.+.. .++. .+.
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~ 422 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN-KTVWEEISGGLDIIQLGKREVP 422 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCC-CcHHHHHHhhccccccCcchHH
Confidence 3456677999999999999999999999887776654310 1110 000
Q ss_pred -c---cccccc----cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEE
Q psy12735 96 -I---ELYGVL----NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERI 167 (233)
Q Consensus 96 -~---~l~g~~----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i 167 (233)
. +.+|.. +.....+|+|..+++ .++++.. .+|++++||||++++|+.+...+.+....+ .+
T Consensus 423 ~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv--~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~--- 491 (552)
T TIGR03719 423 SRAYVGRFNFKGSDQQKKVGQLSGGERNRV--HLAKTLK---SGGNVLLLDEPTNDLDVETLRALEEALLEF---AG--- 491 (552)
T ss_pred HHHHHHhCCCChhHhcCchhhCCHHHHHHH--HHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CC---
Confidence 0 112221 222356788888888 6666554 689999999999999999998887765543 12
Q ss_pred EccCcceEEEEeCCcCccC
Q psy12735 168 RLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 168 ~~~~~~~~i~et~dl~~~s 186 (233)
.+|+.+||+..+.
T Consensus 492 ------~viivsHd~~~~~ 504 (552)
T TIGR03719 492 ------CAVVISHDRWFLD 504 (552)
T ss_pred ------eEEEEeCCHHHHH
Confidence 4778888887664
No 338
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=8.9e-14 Score=117.12 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=78.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCcccc---cccccccccCCC---------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPKAVS---VIELYGVLNPET--------------- 106 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~~~~---~~~l~g~~~~~~--------------- 106 (233)
+|+.++|+||||||||||+++|+|.+.+..|.+.+.+ .+..... ....++++.+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 4445999999999999999999999877654433221 1110000 011122222221
Q ss_pred -------------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 107 -------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 107 -------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
..++.|..+++ .++++.. .+|+++++|||++++|..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl--~laral~---~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 115 LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL--TIARALA---LKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH--HHHHHHH---cCCCEEEEcCCCccCCHHHH
Confidence 22334444444 3333222 48999999999999999998
Q ss_pred HHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
..+.+....+. + ...+++.+|++..+ +.+..|+.++.
T Consensus 190 ~~l~~~l~~~~--~--------~~tiilvsh~~~~~-~~~~d~v~~l~ 226 (257)
T PRK14246 190 QAIEKLITELK--N--------EIAIVIVSHNPQQV-ARVADYVAFLY 226 (257)
T ss_pred HHHHHHHHHHh--c--------CcEEEEEECCHHHH-HHhCCEEEEEE
Confidence 77766554432 1 25788888887754 23335555554
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=4.2e-14 Score=131.32 Aligned_cols=148 Identities=11% Similarity=0.140 Sum_probs=93.7
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee-----eCCcc-------cccc-------------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT-----LNPKA-------VSVI------------------- 96 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~-----~~~~~-------~~~~------------------- 96 (233)
.+..|+.++|+||||||||||+++|+|...+..|.+.+.. ..++. .+..
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 425 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS 425 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence 3455667999999999999999999999887777664411 00000 0000
Q ss_pred ----cccccc----cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEE
Q psy12735 97 ----ELYGVL----NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIR 168 (233)
Q Consensus 97 ----~l~g~~----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~ 168 (233)
+.+|.. +.....+|+|..+++ .++++.. .+|++++||||++++|+.+...+.+....+ .+
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv--~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~---- 493 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRL--HLAKTLK---QGGNVLLLDEPTNDLDVETLRALEEALLEF---PG---- 493 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC----
Confidence 012221 222356788888888 5555554 589999999999999999988887765443 12
Q ss_pred ccCcceEEEEeCCcCccChhhhhcceEEEECC--CCCcchHHHHHHHhh
Q psy12735 169 LLAHCQLLFEVGDLQYASPATVSRAGMVYVDP--INLGYQPYWTRWVNL 215 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~--~~~~~~~~~~swl~~ 215 (233)
.+++.+||+..+..- ..| ++.+++ ....|.--+..|++.
T Consensus 494 -----tvi~vtHd~~~~~~~-~d~--i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 494 -----CAVVISHDRWFLDRI-ATH--ILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred -----eEEEEECCHHHHHHh-CCE--EEEEECCCeEEEecCCHHHHHHH
Confidence 577788888765432 233 344442 222344444556664
No 340
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.41 E-value=2.3e-13 Score=124.50 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=78.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE--------eeeCCccc--------------------cccccc
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART--------YTLNPKAV--------------------SVIELY 99 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~--------~~~~~~~~--------------------~~~~l~ 99 (233)
.+..+..++|+||||+|||||+|+|+|...+..|.+.. +......+ .....+
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 44567779999999999999999999887766665432 11111000 001111
Q ss_pred ccc-------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCc
Q psy12735 100 GVL-------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 100 g~~-------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~ 172 (233)
|.+ .+....+|+|...|+ .++.... ..|.+++|||||+.+|++++..+.+..... .|..+.++|+
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl--~La~ll~---~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD 495 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARL--LLAKLLL---QPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD 495 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHH--HHHHHhc---cCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 111 111235778888888 5555543 589999999999999999998876553322 4755666655
Q ss_pred ceEEE
Q psy12735 173 CQLLF 177 (233)
Q Consensus 173 ~~~i~ 177 (233)
..|+-
T Consensus 496 r~Fl~ 500 (530)
T COG0488 496 RYFLD 500 (530)
T ss_pred HHHHH
Confidence 44433
No 341
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.40 E-value=3.7e-14 Score=145.27 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=78.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--ccccccccccCC-------------------
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLNPE------------------- 105 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~~~------------------- 105 (233)
-.+.+|+.++|+|||||||||++++|+|...+.+|.+.+.+.+.... ...+.+|++.|.
T Consensus 951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 34556677999999999999999999999988888876655332100 011112322222
Q ss_pred ----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 106 ----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 106 ----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
....++|+.+++ .++++.. .+|++++||||++++|+.....+.+..+
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRL--sLArALi---~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL--SVAIAFV---GDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 234455666665 4444443 4899999999999999999988887666
Q ss_pred cccccCceEEEccCc
Q psy12735 158 ILTLANGERIRLLAH 172 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~ 172 (233)
.+. .+..++..+|+
T Consensus 1106 ~l~-~g~TIIltTHd 1119 (2272)
T TIGR01257 1106 KYR-SGRTIIMSTHH 1119 (2272)
T ss_pred HHh-CCCEEEEEECC
Confidence 552 23333334443
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.40 E-value=1.6e-13 Score=119.10 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=105.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhc-----CCCeEEee-----------------------------eCC----
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVL-----GYPARTYT-----------------------------LNP---- 90 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-----~~~i~~~~-----------------------------~~~---- 90 (233)
+..|+.++|||.||||||-..+.+++++... +|.+.+.+ +||
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tI 112 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTI 112 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHH
Confidence 3456669999999999999999998877531 22333221 222
Q ss_pred ---------------------ccccccccccc------ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCH
Q psy12735 91 ---------------------KAVSVIELYGV------LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDA 143 (233)
Q Consensus 91 ---------------------~~~~~~~l~g~------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~ 143 (233)
+.+...+..|. .+..++++++|..++++-+++-+ .+|++++.|||+.+
T Consensus 113 g~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa-----n~P~lLIADEPTTA 187 (534)
T COG4172 113 GKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA-----NEPDLLIADEPTTA 187 (534)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc-----CCCCeEeecCCcch
Confidence 11111122232 34456899999999996555543 48999999999999
Q ss_pred HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC--------CC--cchHHHHHHH
Q psy12735 144 LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI--------NL--GYQPYWTRWV 213 (233)
Q Consensus 144 ~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~--------~~--~~~~~~~swl 213 (233)
+|+.-..++++..+.+.-.-| |.++|.||||.-..- +-.|..++.-+.- -| .-+||+...+
T Consensus 188 LDVtvQaQIL~Ll~~Lq~~~g--------Ma~lfITHDL~iVr~-~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll 258 (534)
T COG4172 188 LDVTVQAQILDLLKELQAELG--------MAILFITHDLGIVRK-FADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLL 258 (534)
T ss_pred hhhhhHHHHHHHHHHHHHHhC--------cEEEEEeccHHHHHH-hhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHH
Confidence 999999999998877766556 999999999986533 3455555554421 11 3467888888
Q ss_pred hhcc
Q psy12735 214 NLNV 217 (233)
Q Consensus 214 ~~~~ 217 (233)
+.-|
T Consensus 259 ~aeP 262 (534)
T COG4172 259 AAEP 262 (534)
T ss_pred hcCC
Confidence 7654
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.39 E-value=2.1e-13 Score=138.47 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR------ 119 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~------ 119 (233)
+++|+.++|+|+||||||||+++|.|++. .+|.+.+++++...++.. +.+++++|++..|++++++|+--
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~td 1320 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSD 1320 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCH
Confidence 34556699999999999999999999997 788999988887665533 44778888887777777766621
Q ss_pred ------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 120 ------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 120 ------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
.+|++. ..++++++||||++++|.++-..+.+..+
T Consensus 1321 eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL---Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI---LSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH---hCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 111111 13799999999999999998777766544
No 344
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.1e-13 Score=118.84 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=84.1
Q ss_pred HHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHHHHHHh
Q psy12735 46 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 46 ~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~~~~~~ 122 (233)
...+..|+.++++||||+||||+.++|-++++...|.+.+.+.+.+..+ ..+.+|.++|++-.|+|.+..++-+ +
T Consensus 283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~y--g 360 (497)
T COG5265 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKY--G 360 (497)
T ss_pred cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhc--c
Confidence 3455677789999999999999999999999999999999888876554 3455799999988898888877732 1
Q ss_pred cC--------------------------------------CCCCC----------CCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 123 KP--------------------------------------LDPGS----------KERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 123 ~~--------------------------------------~~~~~----------~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
+. ++|++ .+|.+++|||.++++|..+-..+..
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 11 11222 3899999999999999877555544
Q ss_pred c
Q psy12735 155 D 155 (233)
Q Consensus 155 ~ 155 (233)
.
T Consensus 441 ~ 441 (497)
T COG5265 441 A 441 (497)
T ss_pred H
Confidence 3
No 345
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.37 E-value=3.5e-13 Score=127.15 Aligned_cols=131 Identities=22% Similarity=0.207 Sum_probs=85.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-------ccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-------IEL 98 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-------~~l 98 (233)
.+++++|.+.++ +.++|+||||||||||+++|+|.+++..|.+.+.+.+...... ...
T Consensus 23 il~~vs~~i~~G---------------e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 87 (648)
T PRK10535 23 VLKGISLDIYAG---------------EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREH 87 (648)
T ss_pred eeeeeEEEEcCC---------------CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhcc
Confidence 456666666554 4599999999999999999999998888877665543322111 112
Q ss_pred cccccCCC-----------------------------------------------CcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 99 YGVLNPET-----------------------------------------------RDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 99 ~g~~~~~~-----------------------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+++.|.. ..++.|..+++ .+++... .+
T Consensus 88 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv--~LAraL~---~~ 162 (648)
T PRK10535 88 FGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRV--SIARALM---NG 162 (648)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHH--HHHHHHh---cC
Confidence 23333322 23334444444 3333332 48
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|+++++|||+.++|.++...+.+..+.+... + ..+++.+|++..+
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g--------~tilivsH~~~~~ 207 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDR-G--------HTVIIVTHDPQVA 207 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-C--------CEEEEECCCHHHH
Confidence 9999999999999999988877765544322 2 5677777777754
No 346
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.37 E-value=9.2e-13 Score=106.70 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=82.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCC---------CeE----------------EeeeCCccc-------cccccc--
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGY---------PAR----------------TYTLNPKAV-------SVIELY-- 99 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~---------~i~----------------~~~~~~~~~-------~~~~l~-- 99 (233)
.++|+|||||||||+++++.++..+..+ .+. +...++... ...+++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 4999999999999999999987632210 111 111111110 001111
Q ss_pred -ccccCCCCcCchhHHHHHHHHHhcCCCC-CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEE
Q psy12735 100 -GVLNPETRDWYDGLLSNIFRAVNKPLDP-GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 177 (233)
Q Consensus 100 -g~~~~~~~~~~~gi~~~~~~~~~~~~~~-~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~ 177 (233)
+..+.....+++|..+++ .+++..+- -...|+++++|||++++|+.....+++..+.+.- +..+++
T Consensus 104 ~~~~~~~~~~LS~G~kqrl--~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~----------~~tiIi 171 (197)
T cd03278 104 PGKKVQRLSLLSGGEKALT--ALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK----------ETQFIV 171 (197)
T ss_pred CCccccchhhcCHHHHHHH--HHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc----------CCEEEE
Confidence 111222356788888887 44332210 0025689999999999999998888776554321 256888
Q ss_pred EeCCcCccChhhhhcceEEEECCCCC
Q psy12735 178 EVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 178 et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+|++..+. ...|+..++.....+
T Consensus 172 itH~~~~~~--~~d~v~~~~~~~~~~ 195 (197)
T cd03278 172 ITHRKGTME--AADRLYGVTMQESGV 195 (197)
T ss_pred EECCHHHHh--hcceEEEEEeccCCC
Confidence 888887653 467888888776544
No 347
>KOG0054|consensus
Probab=99.37 E-value=3.4e-13 Score=133.08 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=65.4
Q ss_pred HHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc---c
Q psy12735 23 LETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL---Y 99 (233)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l---~ 99 (233)
..-+++++++.+.+++. |+|||.+|||||||+++|-|+..+.+|.|.+++++...+...++ +
T Consensus 1152 lp~VLk~is~~I~p~eK---------------VGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEK---------------VGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CcchhcCceEEEcCCce---------------EEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 34578888888876665 99999999999999999999999999999999999887776655 6
Q ss_pred ccccCCCCcCchhHHHHH
Q psy12735 100 GVLNPETRDWYDGLLSNI 117 (233)
Q Consensus 100 g~~~~~~~~~~~gi~~~~ 117 (233)
+.++|++..|+++++.|+
T Consensus 1217 sIIPQdPvLFsGTvR~NL 1234 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNL 1234 (1381)
T ss_pred eeeCCCCceecCcccccc
Confidence 778888777766555443
No 348
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.36 E-value=2.7e-13 Score=103.05 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=58.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----------------------cccc-----------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----------------------VSVI----------- 96 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~----------------------~~~~----------- 96 (233)
..|+.++|+|+||||||||+++|+|.+.+..|.+.+.+.+... .+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~ 88 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEV 88 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHH
T ss_pred cCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566799999999999999999999998777776554322211 0000
Q ss_pred -cccc---c----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCC
Q psy12735 97 -ELYG---V----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142 (233)
Q Consensus 97 -~l~g---~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~ 142 (233)
+.++ . ++.....++.|..+++ .++++.. .+|+++++|||++
T Consensus 89 l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl--~la~al~---~~~~llllDEPt~ 137 (137)
T PF00005_consen 89 LKKLGLEDLLDRKIGQRASSLSGGEKQRL--ALARALL---KNPKLLLLDEPTN 137 (137)
T ss_dssp HHHTTHGGGTGSBGTSCGGGSCHHHHHHH--HHHHHHH---TTSSEEEEESTTT
T ss_pred ccccccccccccccccccchhhHHHHHHH--HHHHHHH---cCCCEEEEeCCCC
Confidence 0011 1 1112256778888888 5554443 5899999999985
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.36 E-value=5.8e-13 Score=125.88 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=81.8
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------eCC----c----c--------------cccc
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--------LNP----K----A--------------VSVI 96 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--------~~~----~----~--------------~~~~ 96 (233)
-.+.+|+.++|+||||||||||+++|+|.+++.+|.+.... ..+ . . .+..
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~ 552 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK 552 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHH
Confidence 34567778999999999999999999999988777654310 010 0 0 0000
Q ss_pred c---c---ccc---ccC---------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 97 E---L---YGV---LNP---------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 97 ~---l---~g~---~~~---------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+ . +|. .+. ....+++|..+++ .++++.. .+|++++||||++++|++....+.+..+.
T Consensus 553 ~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl--~iARal~---~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 553 DLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRI--AMARLFY---HKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred HHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHH--HHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0 0 111 111 0145788888888 6666554 68999999999999999988777664332
Q ss_pred ccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
. +.++++.+|+++.+
T Consensus 628 ~------------~~tvI~isH~~~~~ 642 (659)
T TIGR00954 628 F------------GITLFSVSHRKSLW 642 (659)
T ss_pred c------------CCEEEEEeCchHHH
Confidence 1 36788888888754
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.36 E-value=4e-13 Score=122.96 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=92.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------eCCcccc---c-----------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--------LNPKAVS---V----------------------- 95 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--------~~~~~~~---~----------------------- 95 (233)
..|+.++|||+||+|||||+|+|+|...+..|.+.... ..+...+ .
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~ 106 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45667999999999999999999999988877664321 1110000 0
Q ss_pred -----------------------------ccc---cccc--cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC
Q psy12735 96 -----------------------------IEL---YGVL--NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141 (233)
Q Consensus 96 -----------------------------~~l---~g~~--~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~ 141 (233)
... +|+- +.....+|+|...++ .+|++.- .+|++++|||||
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv--~LA~aL~---~~pDlLLLDEPT 181 (530)
T COG0488 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV--ALARALL---EEPDLLLLDEPT 181 (530)
T ss_pred hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH--HHHHHHh---cCCCEEEEcCCC
Confidence 000 1111 223357888988888 7777665 699999999999
Q ss_pred CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC-cchHHHHHHHhhc
Q psy12735 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 142 ~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~-~~~~~~~swl~~~ 216 (233)
+.+|.+++.=+-+.... .+ |..|.++|+..|+-++ .-.|++++...+ .|.-=+.+|+..+
T Consensus 182 NHLD~~~i~WLe~~L~~--~~-gtviiVSHDR~FLd~V------------~t~I~~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 182 NHLDLESIEWLEDYLKR--YP-GTVIVVSHDRYFLDNV------------ATHILELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred cccCHHHHHHHHHHHHh--CC-CcEEEEeCCHHHHHHH------------hhheEEecCCceeEecCCHHHHHHHH
Confidence 99999998665443321 12 3555555554444332 124556665433 4444567777755
No 351
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.4e-13 Score=110.18 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=84.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC----cc--c-ccccccccccCCC------------------
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP----KA--V-SVIELYGVLNPET------------------ 106 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~----~~--~-~~~~l~g~~~~~~------------------ 106 (233)
...++|.|+||||||||+|+++|+.++..|.+.+++--. +. + ..++.+||+-|+.
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~ 103 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK 103 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence 355899999999999999999999999888776543110 00 0 1122344444433
Q ss_pred -----------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccC
Q psy12735 107 -----------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 163 (233)
Q Consensus 107 -----------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~ 163 (233)
...++|-.+++ ++++++- ..|+++++|||.+++|.....+++-...++.-
T Consensus 104 ~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRV--AIGRALL---t~P~LLLmDEPLaSLD~~RK~EilpylERL~~-- 176 (352)
T COG4148 104 SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRV--AIGRALL---TAPELLLMDEPLASLDLPRKREILPYLERLRD-- 176 (352)
T ss_pred cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHH--HHHHHHh---cCCCeeeecCchhhcccchhhHHHHHHHHHHH--
Confidence 23455555555 4444432 58999999999999998887777654333322
Q ss_pred ceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 164 GERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 164 g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
.-+.-++..+|++..+.-- .-.+|-|++-
T Consensus 177 ------e~~IPIlYVSHS~~Ev~RL---Ad~vV~le~G 205 (352)
T COG4148 177 ------EINIPILYVSHSLDEVLRL---ADRVVVLENG 205 (352)
T ss_pred ------hcCCCEEEEecCHHHHHhh---hheEEEecCC
Confidence 2246778888887765321 1234555543
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.35 E-value=1.7e-13 Score=138.41 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=73.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhh--cCCCeEEeeeCCcccccccccccccCCC--------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLNPKAVSVIELYGVLNPET-------------------- 106 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~~~~~~~~~~~~~l~g~~~~~~-------------------- 106 (233)
+.+|+.++|+||||||||||+++|+|..+. ..|.+.+.+.+.......+..|++.|..
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~ 982 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL 982 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC
Confidence 345566999999999999999999997642 3455555433221111111223322221
Q ss_pred -----------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 107 -----------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 107 -----------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
...++|..+++ .+++... .+|++++||||++++|......
T Consensus 983 ~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRv--sIa~aL~---~~P~lL~LDEPTsgLD~~~a~~ 1057 (1470)
T PLN03140 983 PKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL--TIAVELV---ANPSIIFMDEPTSGLDARAAAI 1057 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHH--HHHHHHh---hCCCEEEEeCCCCCCCHHHHHH
Confidence 13445555555 3333332 4899999999999999999988
Q ss_pred HhhccccccccCceEEEccCc
Q psy12735 152 VMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 152 ~l~~~~~l~l~~g~~i~~~~~ 172 (233)
+++..+.+...+..++...|+
T Consensus 1058 v~~~L~~l~~~g~tVI~t~Hq 1078 (1470)
T PLN03140 1058 VMRTVRNTVDTGRTVVCTIHQ 1078 (1470)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 888776665443333333343
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.35 E-value=5.1e-13 Score=135.85 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=68.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-------EeeeCC--------------cccccc---------c
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-------TYTLNP--------------KAVSVI---------E 97 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-------~~~~~~--------------~~~~~~---------~ 97 (233)
.+++|+.++|+||+|||||||+++|.|.+.+..|.+. +....| +..+.. .
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~ 718 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA 718 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhC
Confidence 3455666999999999999999999999988765432 111111 000000 0
Q ss_pred c---c-----c---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 98 L---Y-----G---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 98 l---~-----g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
+ + | .+.......++|..+|+ .+||+.- .++++++||||++++|.+.-..+++.
T Consensus 719 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI--aLARAly---~~~~IlLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRV--SMARAVY---SNSDIYIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred CHHHHHhCCCCCCceecCCCcccCHHHHHHH--HHHHHHh---cCCCEEEEcCCccccCHHHHHHHHHH
Confidence 0 0 0 01112235778888888 6666654 58999999999999999987777654
No 354
>KOG0066|consensus
Probab=99.34 E-value=1.6e-12 Score=114.16 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=88.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCC---cccc----------------c---c---cccc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNP---KAVS----------------V---I---ELYG 100 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~---~~~~----------------~---~---~l~g 100 (233)
...++||||||.||||++++|.|-+.+..|..+-++ .+. ..+. . + ..+|
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 346999999999999999999998887766532211 000 0000 0 0 1122
Q ss_pred cccCC----CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEE
Q psy12735 101 VLNPE----TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176 (233)
Q Consensus 101 ~~~~~----~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i 176 (233)
..... ....++|...++ .++.+.. ..|++++||||+..+|++++..+-+..+. -+|.+|+++|+-|+|
T Consensus 693 L~sHAHTikikdLSGGQKaRV--alaeLal---~~PDvlILDEPTNNLDIESIDALaEAIne---y~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARV--ALAELAL---GGPDVLILDEPTNNLDIESIDALAEAINE---YNGGVIMVSHDERLI 764 (807)
T ss_pred hhhccceEeeeecCCcchHHH--HHHHHhc---CCCCEEEecCCCCCcchhhHHHHHHHHHh---ccCcEEEEeccccee
Confidence 22111 124677888887 4444332 48999999999999999998877654333 258899999999999
Q ss_pred EEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 177 FEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 177 ~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.|| -|.+-.+.+..+
T Consensus 765 ~eT------------~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 765 VET------------DCNLWVVENQGI 779 (807)
T ss_pred eec------------CceEEEEccCCh
Confidence 997 477777766544
No 355
>KOG0061|consensus
Probab=99.33 E-value=6e-13 Score=124.44 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=91.6
Q ss_pred HHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh---cCCCeEEeeeCCccccccccc
Q psy12735 23 LETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV---LGYPARTYTLNPKAVSVIELY 99 (233)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~---~~~~i~~~~~~~~~~~~~~l~ 99 (233)
.++.+++++...+++.+ .||+||||||||||+++|+|-... ..|.+.+++.....-..+...
T Consensus 42 ~k~iL~~vsg~~~~Gel---------------~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s 106 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGEL---------------LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKIS 106 (613)
T ss_pred cceeeeCcEEEEecCeE---------------EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhee
Confidence 45567777777777666 999999999999999999987643 457777777555555566667
Q ss_pred ccccCCCCcCc-hhHHHHH------------------------HHHH-----hc----------CCCCCC----------
Q psy12735 100 GVLNPETRDWY-DGLLSNI------------------------FRAV-----NK----------PLDPGS---------- 129 (233)
Q Consensus 100 g~~~~~~~~~~-~gi~~~~------------------------~~~~-----~~----------~~~~~~---------- 129 (233)
|++.|+..... .++.+.+ +.++ +. .++|++
T Consensus 107 ~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 107 GYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred EEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 77777543111 1111111 1110 10 111221
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
.+|.+++|||||+++|......++...+.+... | ..+++.+|.++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-g--------rtVi~tIHQPs 231 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-G--------RTVICTIHQPS 231 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-C--------CEEEEEEeCCc
Confidence 389999999999999999998888888877777 5 45566566654
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.32 E-value=8e-13 Score=134.95 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=69.2
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcC-CCeEEee------eCC--------------cccc------------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG-YPARTYT------LNP--------------KAVS------------ 94 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~-~~i~~~~------~~~--------------~~~~------------ 94 (233)
.+++|+.++|+||+|||||||+++|.|.+.+.. |.+.+.+ ..| +..+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~ 718 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTA 718 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhC
Confidence 345566699999999999999999999998887 6764321 111 0000
Q ss_pred ccccc-----cc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 95 VIELY-----GV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 95 ~~~l~-----g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
..+.+ |. +.......++|..+|+ .+||+.- .++++++||||++++|.+.-..+++.
T Consensus 719 L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI--aLARAly---~~~~IlLLDEptSALD~~~~~~I~~~ 782 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRV--SMARAVY---SNSDVYIFDDPLSALDAHVGRQVFDK 782 (1622)
T ss_pred cHHHHHhCCCcccccccCCCCCCCHHHHHHH--HHHHHHh---CCCCEEEECCCccccCHHHHHHHHHH
Confidence 00000 10 1112235778888888 6666554 58999999999999999887666553
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.32 E-value=5.8e-13 Score=134.49 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh---hcCCCeEEeeeCCcccccccccccccCCCC------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST---VLGYPARTYTLNPKAVSVIELYGVLNPETR------------------ 107 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~---~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~------------------ 107 (233)
+.+|+.++|+||||||||||+++|+|..+ +..|.+.+++.+... ..++..|++.|+..
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~ 864 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhC
Confidence 34556699999999999999999999876 455777665543211 12233344443211
Q ss_pred ------------------------------------cCchhHHHHHHHHHhcCCCCCCCCce-EEEEeCCCCHHhHHhHH
Q psy12735 108 ------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERK-YILFDGDVDALWIENMN 150 (233)
Q Consensus 108 ------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~-~lvlDep~~~~~~~~l~ 150 (233)
..++|..+++ .+++... .+|+ +++||||++++|..+..
T Consensus 865 ~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl--~Ia~aL~---~~P~~iLlLDEPTsgLD~~~~~ 939 (1394)
T TIGR00956 865 QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL--TIGVELV---AKPKLLLFLDEPTSGLDSQTAW 939 (1394)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH--HHHHHHH---cCCCeEEEEcCCCCCCCHHHHH
Confidence 2333343333 2222222 3786 99999999999999988
Q ss_pred HHhhcccccccc
Q psy12735 151 SVMDDNKILTLA 162 (233)
Q Consensus 151 ~~l~~~~~l~l~ 162 (233)
.+++..+.+...
T Consensus 940 ~i~~~L~~la~~ 951 (1394)
T TIGR00956 940 SICKLMRKLADH 951 (1394)
T ss_pred HHHHHHHHHHHc
Confidence 888776665433
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.31 E-value=1.1e-12 Score=132.60 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeC
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLN 89 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~ 89 (233)
.+++|+.++|+||||||||||+|+|+|.+.+. .|.+.+++.+
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~ 231 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR 231 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe
Confidence 44667779999999999999999999998765 6777665544
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.30 E-value=1.6e-12 Score=132.42 Aligned_cols=124 Identities=14% Similarity=0.174 Sum_probs=82.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCc--------------ccc------------c
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPK--------------AVS------------V 95 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~--------------~~~------------~ 95 (233)
.+.+|+.++|+||||||||||+++|.|.+.+..|.+.+.+ ..+. ..+ .
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l 739 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACAL 739 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 3456677999999999999999999999988887765422 1110 000 0
Q ss_pred cccccc--------ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc--cccCce
Q psy12735 96 IELYGV--------LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL--TLANGE 165 (233)
Q Consensus 96 ~~l~g~--------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l--~l~~g~ 165 (233)
.+.++. +.......++|+.+++ .+|++.. .+|++++||||++++|.+....+++..... .+.+
T Consensus 740 ~~~l~~~~~g~~t~ig~~g~~LSGGQkqRi--aLARAl~---~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~-- 812 (1522)
T TIGR00957 740 LPDLEILPSGDRTEIGEKGVNLSGGQKQRV--SLARAVY---SNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN-- 812 (1522)
T ss_pred HHHHHhcCCCCCceecCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcC--
Confidence 000111 1122346788999998 6766665 689999999999999999988887654321 1122
Q ss_pred EEEccCcceEEEEeCCcCcc
Q psy12735 166 RIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 166 ~i~~~~~~~~i~et~dl~~~ 185 (233)
.++++.||++..+
T Consensus 813 -------~tvIlvTH~~~~l 825 (1522)
T TIGR00957 813 -------KTRILVTHGISYL 825 (1522)
T ss_pred -------CEEEEEeCChhhh
Confidence 4556666666554
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.29 E-value=2.2e-12 Score=122.62 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=54.6
Q ss_pred CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
..+|+|..+++ .++++.. .+|++++||||++++|+.....+.+..+.+ ...+|+.+||+..+.
T Consensus 343 ~~LSgG~k~rv--~LA~aL~---~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------------~~tviivsHd~~~l~ 405 (718)
T PLN03073 343 KTFSGGWRMRI--ALARALF---IEPDLLLLDEPTNHLDLHAVLWLETYLLKW------------PKTFIVVSHAREFLN 405 (718)
T ss_pred hhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCCCCCHHHHHHHHHHHHHc------------CCEEEEEECCHHHHH
Confidence 46788888888 6666554 689999999999999999988877665443 147788888877654
Q ss_pred hhhhhcceEEEECCCCC
Q psy12735 187 PATVSRAGMVYVDPINL 203 (233)
Q Consensus 187 Pa~isr~~~v~~~~~~~ 203 (233)
.- . ..++++++..+
T Consensus 406 ~~-~--d~i~~l~~g~i 419 (718)
T PLN03073 406 TV-V--TDILHLHGQKL 419 (718)
T ss_pred Hh-C--CEEEEEECCEE
Confidence 32 1 34555555443
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=3.8e-12 Score=97.10 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=75.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEE-----------------------------------eeeCC-
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVL---GYPART-----------------------------------YTLNP- 90 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~-----------------------------------~~~~~- 90 (233)
..|+.|-|+||||||||||+..+.|++... .|.+.+ ..+.+
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~ 105 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT 105 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc
Confidence 445559999999999999999999876421 111110 00100
Q ss_pred -----------cccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 91 -----------KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 91 -----------~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
.+++...+-|.+.+++...++|...++ .+.+..- ..|+.+++|||.+.+|..-....-+..-.-
T Consensus 106 ~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARv--aL~R~Ll---a~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~ 180 (213)
T COG4136 106 LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARV--ALLRALL---AQPKALLLDEPFSRLDVALRDQFRQWVFSE 180 (213)
T ss_pred cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHH--HHHHHHH---hCcceeeeCCchhHHHHHHHHHHHHHHHHH
Confidence 112222344667777778888988887 3333221 489999999999999987654443211000
Q ss_pred cccCceEEEccCcceEEEEeCCcCccC
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
...-| .-.+..|||+..+.
T Consensus 181 ~r~ag--------iPtv~VTHD~~Dvp 199 (213)
T COG4136 181 VRAAG--------IPTVQVTHDLQDVP 199 (213)
T ss_pred HHhcC--------CCeEEEecccccCC
Confidence 11112 45677789988774
No 362
>KOG0927|consensus
Probab=99.29 E-value=1.3e-12 Score=116.96 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=90.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--e-------------------------CCc--c-ccccccc
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT--L-------------------------NPK--A-VSVIELY 99 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~--~-------------------------~~~--~-~~~~~l~ 99 (233)
..+..+++|||||+|||||+|++.+.+.+..|.+.-.. . .+. . -.+..++
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il 493 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL 493 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence 33456999999999999999999999887766542110 0 000 0 0011223
Q ss_pred ccccCC-------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCc
Q psy12735 100 GVLNPE-------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 100 g~~~~~-------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~ 172 (233)
|.+.-. -...++|...++ .++...- +.|.+++||||++++|++++..+-+.... -.|..|.++|+
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rV--lFa~l~~---kqP~lLlLDEPtnhLDi~tid~laeaiNe---~~Ggvv~vSHD 565 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRV--LFARLAV---KQPHLLLLDEPTNHLDIETIDALAEAINE---FPGGVVLVSHD 565 (614)
T ss_pred HHhCCCccccccchhhcccccchhH--HHHHHHh---cCCcEEEecCCCcCCCchhHHHHHHHHhc---cCCceeeeech
Confidence 332211 135678888877 3333322 58999999999999999998776554322 24667888888
Q ss_pred ceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 173 CQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 173 ~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
+++|- ...+--|....+|...|=++
T Consensus 566 frlI~---qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 566 FRLIS---QVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred hhHHH---HHHHHhHhhccCceeecCcc
Confidence 87764 34445566667777766654
No 363
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.28 E-value=1.5e-12 Score=102.39 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee---------
Q psy12735 18 EFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL--------- 88 (233)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~--------- 88 (233)
.|.+...++++.++|...+ ++..+++|.||||||||.|+++|...|.+|.+.+++-
T Consensus 20 lf~r~~~~AV~~vSFtL~~---------------~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 20 LFRRQTVEAVKPVSFTLRE---------------GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhcccceEEEecC---------------CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 3555555666777777655 4559999999999999999999999999887765321
Q ss_pred ----------CCc-ccc------------------------------cccccccccCC----CCcCchhHHHHHHHHHhc
Q psy12735 89 ----------NPK-AVS------------------------------VIELYGVLNPE----TRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 89 ----------~~~-~~~------------------------------~~~l~g~~~~~----~~~~~~gi~~~~~~~~~~ 123 (233)
+|+ +++ ..++.|.++.. ++..+.|..+++ .+++
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV--aLAR 162 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV--ALAR 162 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH--HHHH
Confidence 110 000 00112332221 223455677777 5555
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
++. -+|++++.||...++|.....+++.
T Consensus 163 ALI---L~P~iIIaDeAl~~LD~smrsQl~N 190 (267)
T COG4167 163 ALI---LRPKIIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred HHh---cCCcEEEehhhhhhccHHHHHHHHH
Confidence 544 4899999999999999887666654
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.27 E-value=2e-12 Score=131.46 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=79.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCcc--ccccc---------------------c--
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPKA--VSVIE---------------------L-- 98 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~~--~~~~~---------------------l-- 98 (233)
.+|+.++|+||||||||||+++|+|.+.+..|.+.+.+ ..+.- .+..+ +
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHH
Confidence 44555999999999999999999999998888776532 11100 00000 0
Q ss_pred -c-----cc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc-cccccccCceEEE
Q psy12735 99 -Y-----GV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD-NKILTLANGERIR 168 (233)
Q Consensus 99 -~-----g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~-~~~l~l~~g~~i~ 168 (233)
+ |. +.......++|+.+++ .++++.. .+|++++||||++++|.+....+++. ...+ +.
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi--~lARAl~---~~~~illLDep~saLD~~~~~~i~~~~l~~~-~~------ 597 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARI--SLARAVY---KDADLYLLDSPFTHLDVVTEKEIFESCLCKL-MS------ 597 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hc------
Confidence 0 00 1112346788999988 6666554 58999999999999999998888764 2221 12
Q ss_pred ccCcceEEEEeCCcCcc
Q psy12735 169 LLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~ 185 (233)
+.++|+.||++..+
T Consensus 598 ---~~tvilvtH~~~~~ 611 (1490)
T TIGR01271 598 ---NKTRILVTSKLEHL 611 (1490)
T ss_pred ---CCeEEEEeCChHHH
Confidence 24556666666554
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.26 E-value=2.8e-12 Score=106.07 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=49.1
Q ss_pred CCCcCchhHHHHHHHHHhcCCCCCCCCc--eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLDPGSKER--KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~--~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
....+++|..+++ .+++... .+| +++++|||++++|+.....+++..+.+.. .| ..+++.+||+
T Consensus 134 ~~~~LSgG~~qrv--~laral~---~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g--------~tii~itH~~ 199 (226)
T cd03270 134 SAPTLSGGEAQRI--RLATQIG---SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LG--------NTVLVVEHDE 199 (226)
T ss_pred ccCcCCHHHHHHH--HHHHHHH---hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CC--------CEEEEEEeCH
Confidence 4467888999988 5555443 344 79999999999999998888776554432 23 5788888888
Q ss_pred Ccc
Q psy12735 183 QYA 185 (233)
Q Consensus 183 ~~~ 185 (233)
..+
T Consensus 200 ~~~ 202 (226)
T cd03270 200 DTI 202 (226)
T ss_pred HHH
Confidence 765
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.26 E-value=2.1e-12 Score=130.52 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=74.0
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh----hhcCCCeEEeeeCCcccc--cccccccccCCCC---------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS----TVLGYPARTYTLNPKAVS--VIELYGVLNPETR--------------- 107 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~----~~~~~~i~~~~~~~~~~~--~~~l~g~~~~~~~--------------- 107 (233)
+++|+.++|+||||||||||+|+|+|.. .+..|.+.+++.+..... .+...+++.|...
T Consensus 84 i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~ 163 (1394)
T TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHH
Confidence 4556679999999999999999999975 235677766654432111 1112333333211
Q ss_pred ---------------------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCC
Q psy12735 108 ---------------------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVD 142 (233)
Q Consensus 108 ---------------------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~ 142 (233)
..++|..+|+ .+++... .+|+++++|||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv--sIA~aL~---~~p~vlllDEPTs 238 (1394)
T TIGR00956 164 RCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV--SIAEASL---GGAKIQCWDNATR 238 (1394)
T ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH--HHHHHHH---hCCCEEEEeCCCC
Confidence 1222222222 1111111 3899999999999
Q ss_pred HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 143 ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 143 ~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
++|..+...+++..+.+....| ..+++.+|++
T Consensus 239 gLD~~~~~~i~~~L~~la~~~g--------~tvii~~Hq~ 270 (1394)
T TIGR00956 239 GLDSATALEFIRALKTSANILD--------TTPLVAIYQC 270 (1394)
T ss_pred CcCHHHHHHHHHHHHHHHHhcC--------CEEEEEecCC
Confidence 9999999888887776654333 3455555554
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=8.7e-12 Score=97.00 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
++.|++|++-||||+||||++++|-+-|.+.+|++.+.+
T Consensus 34 V~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H 72 (235)
T COG4778 34 VNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH 72 (235)
T ss_pred ecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEe
Confidence 356777999999999999999999999999999887644
No 368
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.23 E-value=3.5e-11 Score=91.76 Aligned_cols=125 Identities=22% Similarity=0.360 Sum_probs=84.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC--CCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP--ETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~--~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.|+|+||+|+|||++++.++..+ +.++....+. ...+..+++|.+.. ....|.+|.+...++ +
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~-~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-----------~ 65 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCS-SDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-----------K 65 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-T-TTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-----------E
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEec-cccccccceeeeeeccccccccccccccccc-----------c
Confidence 48999999999999999999977 4444443333 33456678877654 345676665443322 6
Q ss_pred ceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccC------cceEEEEeCCcC----ccChhhhhcc
Q psy12735 132 RKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLA------HCQLLFEVGDLQ----YASPATVSRA 193 (233)
Q Consensus 132 ~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~------~~~~i~et~dl~----~~sPa~isr~ 193 (233)
+.|+++||.- +......+..+++..+......++.+...+ ++++|....+.. .++|++.+||
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred eeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 8899999975 455666778888876555445566666655 388888877766 8899999986
No 369
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.23 E-value=1e-11 Score=113.99 Aligned_cols=139 Identities=19% Similarity=0.144 Sum_probs=88.5
Q ss_pred HHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee--------------------
Q psy12735 28 KQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT-------------------- 87 (233)
Q Consensus 28 ~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~-------------------- 87 (233)
+++.+...++. .-+-++.-.+.+|+.+.|.||||||||||+|+|+|+.+--.|.+....
T Consensus 396 ~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 396 ENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred eeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHH
Confidence 34444444444 245555567788999999999999999999999999875445443210
Q ss_pred --eCCcc---cccccc------------cccccCC---CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 88 --LNPKA---VSVIEL------------YGVLNPE---TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 88 --~~~~~---~~~~~l------------~g~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
++|.+ .+-.++ .+..+.. ....++|..+++ .+|+..- ++|+|+++||.|+++|.+
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl--afARilL---~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL--AFARLLL---HKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH--HHHHHHH---cCCCEEEEecchhccChH
Confidence 11211 111111 1112221 123456888888 6666553 799999999999999999
Q ss_pred hHHHHhhccccccccCceEEEccCcc
Q psy12735 148 NMNSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 148 ~l~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
....+++..+. .+++..+|.+.|..
T Consensus 550 ~e~~l~q~l~~-~lp~~tvISV~Hr~ 574 (604)
T COG4178 550 TEDRLYQLLKE-ELPDATVISVGHRP 574 (604)
T ss_pred HHHHHHHHHHh-hCCCCEEEEeccch
Confidence 88777665433 34666677766543
No 370
>PTZ00243 ABC transporter; Provisional
Probab=99.21 E-value=8.5e-12 Score=127.26 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=78.6
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe------eeCCcc--ccccc---------------------c--
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY------TLNPKA--VSVIE---------------------L-- 98 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~------~~~~~~--~~~~~---------------------l-- 98 (233)
.+|+.++|+||||||||||+++|+|.+.+..|.+... ...+.- .+..+ +
T Consensus 684 ~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEA 763 (1560)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHH
Confidence 4455599999999999999999999998877765431 111100 00000 0
Q ss_pred -c-----cc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEc
Q psy12735 99 -Y-----GV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL 169 (233)
Q Consensus 99 -~-----g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~ 169 (233)
+ |. +.......++|+.+++ .++++.. .+|++++||||++++|+.....+++......+.
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRv--aLARAl~---~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~------- 831 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARV--SLARAVY---ANRDVYLLDDPLSALDAHVGERVVEECFLGALA------- 831 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC-------
Confidence 0 11 1222356788888888 6666554 589999999999999998877666532110111
Q ss_pred cCcceEEEEeCCcCcc
Q psy12735 170 LAHCQLLFEVGDLQYA 185 (233)
Q Consensus 170 ~~~~~~i~et~dl~~~ 185 (233)
+..+++.|||+..+
T Consensus 832 --~~TvIlvTH~~~~~ 845 (1560)
T PTZ00243 832 --GKTRVLATHQVHVV 845 (1560)
T ss_pred --CCEEEEEeCCHHHH
Confidence 25667777777665
No 371
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=1.6e-12 Score=103.13 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=31.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
..|+--+|+||||+||||++.++.|-..+..|.+.+.+
T Consensus 29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g 66 (249)
T COG4674 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66 (249)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC
Confidence 34444999999999999999999998887777766544
No 372
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.19 E-value=2.4e-11 Score=98.56 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=56.2
Q ss_pred hhc-ceEEEEcCCCCChHHHHHHHH-hhhh-hcCCCeEEeeeCCcccc-cccccc------cccCCCCcCchhHHHHHHH
Q psy12735 50 LTR-HSTMIVGPTGGGKSVVINALV-KTST-VLGYPARTYTLNPKAVS-VIELYG------VLNPETRDWYDGLLSNIFR 119 (233)
Q Consensus 50 ~~~-~~v~lvGpsGsGKSTlik~L~-~~~~-~~~~~i~~~~~~~~~~~-~~~l~g------~~~~~~~~~~~gi~~~~~~ 119 (233)
..+ +.++|+|||||||||+++++. ..+- ..|..+.... ...+. ..+.+. ........|+.|+.+..
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~-- 100 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--GSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIA-- 100 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--cccCcCccEEEEecCchhhhhcCcchHHHHHHHHH--
Confidence 344 359999999999999999988 2211 1121111100 00000 111111 12222346677887665
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
.++... .+|+++++|||++++|++....+.
T Consensus 101 ~i~~~~----~~p~llllDEp~~glD~~~~~~i~ 130 (200)
T cd03280 101 RILQHA----DPDSLVLLDELGSGTDPVEGAALA 130 (200)
T ss_pred HHHHhC----CCCcEEEEcCCCCCCCHHHHHHHH
Confidence 444433 489999999999999998766654
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.19 E-value=2e-11 Score=99.97 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=46.4
Q ss_pred cCCCCcCchhHHHHHHHHHhcCCCCC-------CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceE
Q psy12735 103 NPETRDWYDGLLSNIFRAVNKPLDPG-------SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQL 175 (233)
Q Consensus 103 ~~~~~~~~~gi~~~~~~~~~~~~~~~-------~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~ 175 (233)
+.....+++|..+++ .++++.+.. ..+|+++++|||++++|+.....+.+....+.-. + ..+
T Consensus 118 ~~~~~~lS~G~~~r~--~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~--------~ti 186 (213)
T cd03279 118 ARPVSTLSGGETFLA--SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-N--------RMV 186 (213)
T ss_pred cCCccccCHHHHHHH--HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-C--------CEE
Confidence 334456888988888 443333200 1267999999999999999887776554433222 2 467
Q ss_pred EEEeCCcCcc
Q psy12735 176 LFEVGDLQYA 185 (233)
Q Consensus 176 i~et~dl~~~ 185 (233)
++.+|++..+
T Consensus 187 i~itH~~~~~ 196 (213)
T cd03279 187 GVISHVEELK 196 (213)
T ss_pred EEEECchHHH
Confidence 7777777655
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.14 E-value=1.4e-10 Score=96.60 Aligned_cols=80 Identities=18% Similarity=0.061 Sum_probs=50.9
Q ss_pred CcCchhHHHHHHHHHhcCCCCC-CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPG-SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~-~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..+++|..+++ .+++..... ...|+++++|||++++|+.....+++..+.+.. + ..+++.+|+....
T Consensus 157 ~~lS~G~~~r~--~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~--------~~ii~~~h~~~~~ 224 (243)
T cd03272 157 QQLSGGQKSLV--ALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--G--------AQFITTTFRPELL 224 (243)
T ss_pred cccCHHHHHHH--HHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--C--------CEEEEEecCHHHH
Confidence 45777888888 444433100 135899999999999999998888776554321 2 4566655553322
Q ss_pred ChhhhhcceEEEECC
Q psy12735 186 SPATVSRAGMVYVDP 200 (233)
Q Consensus 186 sPa~isr~~~v~~~~ 200 (233)
....||.++-+++
T Consensus 225 --~~~d~i~~l~~~~ 237 (243)
T cd03272 225 --EVADKFYGVKFRN 237 (243)
T ss_pred --hhCCEEEEEEEEC
Confidence 3456676666654
No 375
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.12 E-value=8.2e-12 Score=100.29 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=66.2
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC------
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL------ 203 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~------ 203 (233)
..|++++.|||+.++++....+++.....++-.++ .+++...||+..+|- +-.|..++|.+++.-
T Consensus 175 nqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~--------TtILL~s~Dl~~is~-W~d~i~VlYCGQ~~ESa~~e~ 245 (330)
T COG4170 175 NQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN--------TTILLISHDLQMISQ-WADKINVLYCGQTVESAPSEE 245 (330)
T ss_pred cCCceEeccCCCcccCccHHHHHHHHHHHhhccCC--------ceEEEEcccHHHHHH-HhhheEEEEecccccccchhH
Confidence 48999999999999999998888887776666655 677888889988865 678999999997644
Q ss_pred ----cchHHHHHHHhhcccc
Q psy12735 204 ----GYQPYWTRWVNLNVKA 219 (233)
Q Consensus 204 ----~~~~~~~swl~~~~~~ 219 (233)
.-+||+++.++..|+|
T Consensus 246 l~~~PhHPYTqALi~a~PDF 265 (330)
T COG4170 246 LVTMPHHPYTQALIRAIPDF 265 (330)
T ss_pred HhcCCCCchHHHHHHhCccc
Confidence 3378999999988765
No 376
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.10 E-value=7e-09 Score=87.62 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC----------
Q psy12735 35 VPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP---------- 104 (233)
Q Consensus 35 ~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~---------- 104 (233)
++..-+-.-++...+..+..+.|.||+|+|||++.+.++... +.++.....+. .....+++|....
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHH
Confidence 344433334445667788999999999999999999998733 55554433332 2233344443210
Q ss_pred ----------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccC----ceEEE
Q psy12735 105 ----------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLAN----GERIR 168 (233)
Q Consensus 105 ----------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~----g~~i~ 168 (233)
....|.+|.+...++ ++.|+++||.. +......+..++++ +.+.+++ ++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~-----------~g~~lllDEi~r~~~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVR-----------EGFTLVYDEFTRSKPETNNVLLSVFEE-GVLELPGKRGTSRYVD 147 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHH-----------cCCEEEEcchhhCCHHHHHHHHHHhcC-CeEEccCCCCCCceEe
Confidence 112455554433321 45699999974 33344455666665 4445543 35667
Q ss_pred ccCcceEEEEeCCc-----CccChhhhhcceEEEECC
Q psy12735 169 LLAHCQLLFEVGDL-----QYASPATVSRAGMVYVDP 200 (233)
Q Consensus 169 ~~~~~~~i~et~dl-----~~~sPa~isr~~~v~~~~ 200 (233)
..+++++|+-.... ...++++..||..++++-
T Consensus 148 ~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 148 VHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred cCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 77888888744322 244788999999998884
No 377
>KOG0059|consensus
Probab=99.08 E-value=1e-10 Score=113.77 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----cccccccccccCCCCcCch------
Q psy12735 42 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----VSVIELYGVLNPETRDWYD------ 111 (233)
Q Consensus 42 ~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~----~~~~~l~g~~~~~~~~~~~------ 111 (233)
+..+.-.++++++.++.|+|||||||++|++.|...+.+|.+.+.+-+... ....+.+|+-+|....|.+
T Consensus 581 v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEh 660 (885)
T KOG0059|consen 581 VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREH 660 (885)
T ss_pred hcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHH
Confidence 446667788899999999999999999999999999999988775443321 1244557777776544433
Q ss_pred --------hH--------HHHHHHHH----------hcCCCCCC----------CCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 112 --------GL--------LSNIFRAV----------NKPLDPGS----------KERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 112 --------gi--------~~~~~~~~----------~~~~~~~~----------~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
|+ .+++++.+ ...++|.+ .+|.++++|||++++|+.....+.+.
T Consensus 661 L~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i 740 (885)
T KOG0059|consen 661 LEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI 740 (885)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 10 01111100 00111111 27999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
...+.. +| ..++.-+|++..+ -++=.|++++.-+
T Consensus 741 i~~~~k-~g--------~aiiLTSHsMeE~-EaLCtR~aImv~G 774 (885)
T KOG0059|consen 741 IARLRK-NG--------KAIILTSHSMEEA-EALCTRTAIMVIG 774 (885)
T ss_pred HHHHHh-cC--------CEEEEEcCCHHHH-HHHhhhhheeecC
Confidence 555433 23 2556656666655 4445566666555
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.07 E-value=4.9e-10 Score=91.77 Aligned_cols=81 Identities=16% Similarity=0.012 Sum_probs=52.8
Q ss_pred CcCchhHHHHHHHHHhcCCC-CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 107 RDWYDGLLSNIFRAVNKPLD-PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~-~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..++.|+.+++ .++++.+ .....|+++++|||++++|+.....+.+..+.+. .+ ..+++.+|+....
T Consensus 126 ~~lS~G~~~r~--~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~---------~~~iivs~~~~~~ 193 (212)
T cd03274 126 SNLSGGEKTLS--SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KN---------AQFIVISLRNNMF 193 (212)
T ss_pred hhcCHHHHHHH--HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CC---------CEEEEEECcHHHH
Confidence 46788988888 4444221 0002579999999999999999888777655432 22 3566666664322
Q ss_pred ChhhhhcceEEEECCC
Q psy12735 186 SPATVSRAGMVYVDPI 201 (233)
Q Consensus 186 sPa~isr~~~v~~~~~ 201 (233)
..-.||-+++....
T Consensus 194 --~~~d~v~~~~~~~~ 207 (212)
T cd03274 194 --ELADRLVGIYKTNN 207 (212)
T ss_pred --HhCCEEEEEEecCC
Confidence 34567888877654
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.06 E-value=8.1e-10 Score=89.95 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=45.2
Q ss_pred CCcCchhHHHHHH----HHHhcCCCCCCCCceEEEEeCCCCHHhHHhHH-HHhhccccccccCceEEEccCcceEEEEeC
Q psy12735 106 TRDWYDGLLSNIF----RAVNKPLDPGSKERKYILFDGDVDALWIENMN-SVMDDNKILTLANGERIRLLAHCQLLFEVG 180 (233)
Q Consensus 106 ~~~~~~gi~~~~~----~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~-~~l~~~~~l~l~~g~~i~~~~~~~~i~et~ 180 (233)
....++|..+++. -.+++... ..|+++++|||++++|++... .+.+....+.-..+ ..+++.+|
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~---~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~--------~~iiiitH 181 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFG---SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKN--------FQLIVITH 181 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhc---cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccC--------CEEEEEEe
Confidence 4567788887631 13344433 589999999999999998877 66665443322212 46777777
Q ss_pred CcCcc
Q psy12735 181 DLQYA 185 (233)
Q Consensus 181 dl~~~ 185 (233)
+...+
T Consensus 182 ~~~~~ 186 (204)
T cd03240 182 DEELV 186 (204)
T ss_pred cHHHH
Confidence 76654
No 380
>KOG0054|consensus
Probab=99.06 E-value=8.4e-11 Score=116.48 Aligned_cols=145 Identities=19% Similarity=0.294 Sum_probs=94.3
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee------CC---------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL------NP--------- 90 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~------~~--------- 90 (233)
.++++++++.+|+. ++|+||.|||||+|+.++.|.+....|.+.+.+- .|
T Consensus 536 tL~dIn~~i~~G~l---------------vaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQL---------------VAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred cccceeEEecCCCE---------------EEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH
Confidence 67778888766665 9999999999999999999998887777655331 11
Q ss_pred -----------------cccccc---ccc--c---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh
Q psy12735 91 -----------------KAVSVI---ELY--G---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 91 -----------------~~~~~~---~l~--g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
++..+. +++ | .+.......++|+.+|+ .+||+.= ++.++.+||.|.++.|
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRI--sLARAVY---~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRI--SLARAVY---QDADIYLLDDPLSAVD 675 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHH--HHHHHHh---ccCCEEEEcCcchhhh
Confidence 000000 001 1 11122235678888888 6666543 5889999999999999
Q ss_pred HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 146 IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 146 ~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+.-+.++++--...+.+. +.|..||.+....-+ =.++.|++..+
T Consensus 676 ahvg~~if~~ci~~~L~~K---------T~ILVTHql~~L~~a----d~Iivl~~G~I 720 (1381)
T KOG0054|consen 676 AHVGKHIFEECIRGLLRGK---------TVILVTHQLQFLPHA----DQIIVLKDGKI 720 (1381)
T ss_pred HhhhHHHHHHHHHhhhcCC---------EEEEEeCchhhhhhC----CEEEEecCCeE
Confidence 9998888776332233333 445556655555444 35666666555
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.05 E-value=2.5e-10 Score=92.60 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++.++|+|||||||||++|++++..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 35679999999999999999998765
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.02 E-value=1.8e-10 Score=97.03 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=52.5
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+....+++|..+++ .+++........|++++||||++++|+.....+++....+.-. | ..+++.+||+.
T Consensus 165 ~~~~~LSgGe~QRl--~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g--------~tvIiitH~~~ 233 (261)
T cd03271 165 QPATTLSGGEAQRI--KLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-G--------NTVVVIEHNLD 233 (261)
T ss_pred CccccCCHHHHHHH--HHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHH
Confidence 33456778888888 5554443111247999999999999999988877765544322 2 46777777777
Q ss_pred ccChhhhhcceEEEEC
Q psy12735 184 YASPATVSRAGMVYVD 199 (233)
Q Consensus 184 ~~sPa~isr~~~v~~~ 199 (233)
.+.- ...++.++
T Consensus 234 ~i~~----aD~ii~Lg 245 (261)
T cd03271 234 VIKC----ADWIIDLG 245 (261)
T ss_pred HHHh----CCEEEEec
Confidence 6532 23555553
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.02 E-value=7.4e-10 Score=86.74 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=82.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccccc---ccccCC--C----CcCch--------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELY---GVLNPE--T----RDWYD-------- 111 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~---g~~~~~--~----~~~~~-------- 111 (233)
...|+..=++||||||||||+-.++|... ..|.+++.+.+....+..++. .|..|. + ..|..
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~ 100 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK 100 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchH
Confidence 34566689999999999999999999875 456777777665443333331 111111 0 01110
Q ss_pred ---hHHH----------HHHHHHhcCCCCC-----------------CCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 112 ---GLLS----------NIFRAVNKPLDPG-----------------SKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 112 ---gi~~----------~~~~~~~~~~~~~-----------------~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
+.+. ++-|.+.+.++|+ ....+++++|||.+++|+.....+-.....+|.
T Consensus 101 ~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~ 180 (248)
T COG4138 101 TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ 180 (248)
T ss_pred HHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh
Confidence 1111 1111222222221 236788999999999999876554444455565
Q ss_pred cCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
.+-.+|+..|+.. |.|.+|--+++-.=|.++..
T Consensus 181 ~G~~vims~HDLN-----hTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 181 QGLAIVMSSHDLN-----HTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred CCcEEEEeccchh-----hHHHHHHHHHHHhcCeEEee
Confidence 5555555444432 34456777766444555544
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.5e-10 Score=99.28 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=40.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
-.+++|+.|.|+|.|||||||++++|.|++.|..|.+.+++-....
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 3678899999999999999999999999999999999987765533
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.00 E-value=8.7e-10 Score=92.33 Aligned_cols=82 Identities=15% Similarity=0.026 Sum_probs=53.3
Q ss_pred CcCchhHHHHHHHHHhcCCCCC-CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPG-SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~-~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..+++|..+++ .+++..... ...|+++++|||++++|+.....+.+....+... | ..+++.+|+...+
T Consensus 154 ~~LS~G~k~rl--~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g--------~~vi~isH~~~~~ 222 (247)
T cd03275 154 DNLSGGEKTMA--ALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-N--------FQFIVISLKEEFF 222 (247)
T ss_pred HHcCHHHHHHH--HHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-C--------cEEEEEECCHHHH
Confidence 34566777766 333332200 0248999999999999999888777655544322 2 5777878886655
Q ss_pred ChhhhhcceEEEECCC
Q psy12735 186 SPATVSRAGMVYVDPI 201 (233)
Q Consensus 186 sPa~isr~~~v~~~~~ 201 (233)
. ...|+-+++.+.+
T Consensus 223 ~--~~d~i~~~~~~~~ 236 (247)
T cd03275 223 S--KADALVGVYRDQE 236 (247)
T ss_pred h--hCCeEEEEEecCC
Confidence 3 3457777777754
No 386
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.99 E-value=8.2e-10 Score=86.65 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=68.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe-----eeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY-----TLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~ 127 (233)
..++|+|||||||||+++.+....-...+..... +....+.+.. + + ......++|..+++ .+++....
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~---i-~~~~~lS~G~~~~~--~la~~L~~ 94 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAE-L---I-FTRLQLSGGEKELS--ALALILAL 94 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEE-E---e-hheeeccccHHHHH--HHHHHHHh
Confidence 4699999999999999999865442221111100 0000000000 0 0 11123677877776 33332220
Q ss_pred C-CCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 128 G-SKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 128 ~-~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
. ..+|+++++|||..++|+.....+.+....+... + ..+++.||+...+..
T Consensus 95 ~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~--------~~vii~TH~~~~~~~ 146 (162)
T cd03227 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-G--------AQVIVITHLPELAEL 146 (162)
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C--------CEEEEEcCCHHHHHh
Confidence 0 1278999999999999998776665543332211 2 577888888877654
No 387
>PHA02244 ATPase-like protein
Probab=98.97 E-value=2.2e-08 Score=87.54 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHH
Q psy12735 41 KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA 120 (233)
Q Consensus 41 k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~ 120 (233)
....+...+..+..+.|.||+|||||++++.++... +.+... ++. ..+...+.|++... ..|.+|-+.+.+
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~--In~-l~d~~~L~G~i~~~-g~~~dgpLl~A~-- 178 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYF--MNA-IMDEFELKGFIDAN-GKFHETPFYEAF-- 178 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEE--Eec-ChHHHhhccccccc-ccccchHHHHHh--
Confidence 344555777889999999999999999999998864 333322 221 11222345544332 367766654442
Q ss_pred HhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc-----------CccCh
Q psy12735 121 VNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL-----------QYASP 187 (233)
Q Consensus 121 ~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl-----------~~~sP 187 (233)
.+..|+++||.. .+.-...++.++++. .+.+. ++.+....++++|+-.... +.+.+
T Consensus 179 ---------~~GgvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~ 247 (383)
T PHA02244 179 ---------KKGGLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVARNKIDG 247 (383)
T ss_pred ---------hcCCEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCCCcccCH
Confidence 256799999975 333445667777653 33444 5566677788888854431 56799
Q ss_pred hhhhcceEEEECC
Q psy12735 188 ATVSRAGMVYVDP 200 (233)
Q Consensus 188 a~isr~~~v~~~~ 200 (233)
|+++|+..|+++-
T Consensus 248 AllDRFv~I~~dy 260 (383)
T PHA02244 248 ATLDRFAPIEFDY 260 (383)
T ss_pred HHHhhcEEeeCCC
Confidence 9999999999985
No 388
>KOG0062|consensus
Probab=98.97 E-value=3.9e-10 Score=100.73 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE--EeeeCC--------------------ccc----cccc----
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR--TYTLNP--------------------KAV----SVIE---- 97 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~--~~~~~~--------------------~~~----~~~~---- 97 (233)
.+..|+.-+|+|+||+|||||+++++... ..+.++. ..+.+. ..+ +..+
T Consensus 102 ~L~~GrRYGLvGrNG~GKsTLLRaia~~~-v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~ 180 (582)
T KOG0062|consen 102 TLSRGRRYGLVGRNGIGKSTLLRAIANGQ-VSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDK 180 (582)
T ss_pred eeecccccceeCCCCCcHHHHHHHHHhcC-cCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHH
Confidence 45678889999999999999999998721 1111111 111110 000 1111
Q ss_pred -c--cccc----cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEcc
Q psy12735 98 -L--YGVL----NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170 (233)
Q Consensus 98 -l--~g~~----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~ 170 (233)
+ +|+- .+....|++|..=++ ++|++.- .+|++++||||++.+|+.++.=+-...... ..+.+.++
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrl--aLARAlf---~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVS 252 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRL--ALARALF---AKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVS 252 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHH--HHHHHHh---cCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEe
Confidence 1 2332 234578999988877 6666654 699999999999999998864443222211 14555666
Q ss_pred CcceEEEE
Q psy12735 171 AHCQLLFE 178 (233)
Q Consensus 171 ~~~~~i~e 178 (233)
|+-.|+-+
T Consensus 253 HDr~FLn~ 260 (582)
T KOG0062|consen 253 HDRNFLNT 260 (582)
T ss_pred ccHHHHHH
Confidence 66555544
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.97 E-value=3.5e-09 Score=85.84 Aligned_cols=84 Identities=12% Similarity=-0.043 Sum_probs=52.8
Q ss_pred CCCcCchhHHHHHHHHHhcCCC-CCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc-CceEEEccCcceEEEEeCCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLD-PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA-NGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~-~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~-~g~~i~~~~~~~~i~et~dl 182 (233)
....++.|..+++ .++.+.+ -.-.+|+++++|||+.++|......+.+....+... .+ ...+++.+|++
T Consensus 106 ~~~~lS~G~k~r~--~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~-------~~~iii~th~~ 176 (198)
T cd03276 106 DVKTLSGGERSFS--TVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPG-------RQFIFITPQDI 176 (198)
T ss_pred cccccChhHHHHH--HHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCC-------cEEEEEECCcc
Confidence 3457788998887 4433220 000489999999999999999888777655444322 11 13455556666
Q ss_pred CccChhhhhcceEEEEC
Q psy12735 183 QYASPATVSRAGMVYVD 199 (233)
Q Consensus 183 ~~~sPa~isr~~~v~~~ 199 (233)
..+.- +.|.+++-+.
T Consensus 177 ~~i~~--~d~v~~~~~~ 191 (198)
T cd03276 177 SGLAS--SDDVKVFRMK 191 (198)
T ss_pred ccccc--ccceeEEEec
Confidence 66632 2577776664
No 390
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.97 E-value=4.5e-10 Score=94.21 Aligned_cols=63 Identities=17% Similarity=0.047 Sum_probs=41.1
Q ss_pred CcCchhHHHHHHHHHhcCCCC-CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCC
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDP-GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGD 181 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~-~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~d 181 (233)
..++.|..+++ .+++..+. ....|+++++|||++++|+.....+++..+.+. . | ..+++.+|+
T Consensus 165 ~~lS~G~~qr~--~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g--------~~ii~iSH~ 228 (251)
T cd03273 165 TELSGGQRSLV--ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-G--------SQFIVVSLK 228 (251)
T ss_pred cccCHHHHHHH--HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-C--------CEEEEEECC
Confidence 45667777777 44432210 003579999999999999999888877655442 2 2 456666676
No 391
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.96 E-value=1.2e-09 Score=88.82 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=49.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh-hh-cCCCeEE--eeeCCccccccccccccc------CCCCcCchhHHHHHHH
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS-TV-LGYPART--YTLNPKAVSVIELYGVLN------PETRDWYDGLLSNIFR 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~-~~-~~~~i~~--~~~~~~~~~~~~l~g~~~------~~~~~~~~gi~~~~~~ 119 (233)
..++.++|+|||||||||+++++++.. .. .|..+.- ..+.+ ..+++..++ .....|..++.+..
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~----~dqi~~~~~~~d~i~~~~s~~~~e~~~l~-- 100 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL----VDRIFTRIGAEDSISDGRSTFMAELLELK-- 100 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCC----cCEEEEEecCcccccCCceeHHHHHHHHH--
Confidence 345679999999999999999998532 11 2211100 00110 111211111 11122333333211
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.+.... .+|+++++|||++++|+.....+
T Consensus 101 ~i~~~~----~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 101 EILSLA----TPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred HHHHhc----cCCeEEEEecCCCCCCHHHHHHH
Confidence 222221 48999999999998888655444
No 392
>KOG0065|consensus
Probab=98.93 E-value=6.9e-10 Score=108.49 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=73.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh--hcCCCeEEeeeCCcccccccccccccCCC-CcCchhHHHHHH-----H--
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST--VLGYPARTYTLNPKAVSVIELYGVLNPET-RDWYDGLLSNIF-----R-- 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~--~~~~~i~~~~~~~~~~~~~~l~g~~~~~~-~~~~~gi~~~~~-----~-- 119 (233)
++|.-++|+|+||||||||+++|++-.. ...|.+.+.+......+..+..|++.|.. |.-.-++.+.+. |
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp 894 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP 894 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCC
Confidence 4455599999999999999999998432 12345566665544456777788887643 222223333331 1
Q ss_pred ----------------------HHhcCCCC---------C----------CCCc-eEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 120 ----------------------AVNKPLDP---------G----------SKER-KYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 120 ----------------------~~~~~~~~---------~----------~~~~-~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
.++.+..| | ..+| .++.||||++++|..+.-.++...+
T Consensus 895 ~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr 974 (1391)
T KOG0065|consen 895 KEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLR 974 (1391)
T ss_pred CcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence 01111111 0 1378 8899999999999999988888877
Q ss_pred ccccc
Q psy12735 158 ILTLA 162 (233)
Q Consensus 158 ~l~l~ 162 (233)
.++..
T Consensus 975 kla~t 979 (1391)
T KOG0065|consen 975 KLADT 979 (1391)
T ss_pred HHHhc
Confidence 77663
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.93 E-value=2.3e-09 Score=94.84 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=81.4
Q ss_pred HHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCC-----eEEeeeCCc---ccccccc
Q psy12735 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP-----ARTYTLNPK---AVSVIEL 98 (233)
Q Consensus 27 ~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-----i~~~~~~~~---~~~~~~l 98 (233)
+-+..|.++++.+ ..++.++++||||-||||++|+|+|.+++..|. +.+...+.. .-+..++
T Consensus 352 ~g~F~L~V~~G~i----------~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 352 YGDFKLEVEEGEI----------YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred cCceEEEecCCee----------ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 3466677777765 778899999999999999999999999987663 111111110 0000111
Q ss_pred ------------------------cccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 99 ------------------------YGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 99 ------------------------~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
-..+++.-...++|-+|++ ++|..++ .+.++.++|||.+.+|.|..-.+-.
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRv--aIaa~L~---reADlYllDEPSA~LDvEqR~~vak 496 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRV--AIAAALS---READLYLLDEPSAYLDVEQRIIVAK 496 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHH--HHHHHhc---cccCEEEecCchhhccHHHHHHHHH
Confidence 0123344457889999999 5555444 6889999999999999998755555
Q ss_pred ccccccccC
Q psy12735 155 DNKILTLAN 163 (233)
Q Consensus 155 ~~~~l~l~~ 163 (233)
..++....+
T Consensus 497 vIRR~~e~~ 505 (591)
T COG1245 497 VIRRFIENN 505 (591)
T ss_pred HHHHHHhhc
Confidence 555544443
No 394
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.92 E-value=3.3e-08 Score=85.35 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=98.2
Q ss_pred CCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccccccccc----CC
Q psy12735 30 DNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN----PE 105 (233)
Q Consensus 30 ~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~----~~ 105 (233)
-+|.+.+..... +...+..+..+.|.||+|+||||+++.++..+. .+......++ .++..+++|... ..
T Consensus 45 ~~y~f~~~~~~~---vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~---~~~~rV~~~~-~l~~~DliG~~~~~l~~g 117 (327)
T TIGR01650 45 PAYLFDKATTKA---ICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN---WPCVRVNLDS-HVSRIDLVGKDAIVLKDG 117 (327)
T ss_pred CCccCCHHHHHH---HHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC---CCeEEEEecC-CCChhhcCCCceeeccCC
Confidence 456666665533 344556688899999999999999999998664 3332222222 234445666421 11
Q ss_pred --CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccC-ceEEEccCcceEEEEeC
Q psy12735 106 --TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLAN-GERIRLLAHCQLLFEVG 180 (233)
Q Consensus 106 --~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~-g~~i~~~~~~~~i~et~ 180 (233)
...|.+|.+..+.+ ++.|+++||-. .+.-...++.+++..+.+.+.+ ++.+...++++++. |.
T Consensus 118 ~~~~~f~~GpL~~A~~-----------~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA-T~ 185 (327)
T TIGR01650 118 KQITEFRDGILPWALQ-----------HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA-TA 185 (327)
T ss_pred cceeEEecCcchhHHh-----------CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE-ee
Confidence 24788888776633 57889999964 3334455777898777788764 55555555777777 44
Q ss_pred CcC-------------ccChhhhhcceEE-EEC
Q psy12735 181 DLQ-------------YASPATVSRAGMV-YVD 199 (233)
Q Consensus 181 dl~-------------~~sPa~isr~~~v-~~~ 199 (233)
|.. ...+|++.|+.++ .++
T Consensus 186 Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 186 NTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred CCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 442 2368899999876 465
No 395
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.91 E-value=4e-09 Score=89.27 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccc---cccccCCCCcCchhHH-----HHHHHHHhc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIEL---YGVLNPETRDWYDGLL-----SNIFRAVNK 123 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l---~g~~~~~~~~~~~gi~-----~~~~~~~~~ 123 (233)
..++|+|||||||||+++.+++.+.+..|.+.+.+......+ ..++ ++.+.|........++ ...+..+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 679999999999999999999999988888877655443221 1222 3333332111000111 111222333
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
. .+|+++++|||....+...+...+. .| ..+++.+|+..
T Consensus 192 ~-----~~P~villDE~~~~e~~~~l~~~~~--------~G--------~~vI~ttH~~~ 230 (270)
T TIGR02858 192 S-----MSPDVIVVDEIGREEDVEALLEALH--------AG--------VSIIATAHGRD 230 (270)
T ss_pred h-----CCCCEEEEeCCCcHHHHHHHHHHHh--------CC--------CEEEEEechhH
Confidence 2 4799999999987655444333221 13 57777777643
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.85 E-value=7.5e-10 Score=97.86 Aligned_cols=131 Identities=22% Similarity=0.175 Sum_probs=81.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCC------------------------------eEE------eeeCCccc
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP------------------------------ART------YTLNPKAV 93 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~------------------------------i~~------~~~~~~~~ 93 (233)
..|+.++|+||||-||||.+|+|+|.+.|+=|. ++. ...-|+.+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 456779999999999999999999987654221 111 00001100
Q ss_pred c--cc-------------------cccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 94 S--VI-------------------ELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 94 ~--~~-------------------~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
. .. .+-..++.+-.+.++|-+|++ +++.... ++.++.+||||++.+|+...-.+
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~--aIaa~l~---rdADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRV--AIAAALL---RDADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHH--HHHHHHh---ccCCEEEEcCCcccccHHHHHHH
Confidence 0 00 111223444567888999998 4444333 68899999999999999876555
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
-...+.+..++...+-+.|++.++.=++|.-++
T Consensus 253 ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 253 ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred HHHHHHHhccCCeEEEEechHHHHHHhhheeEE
Confidence 555555555555555566666555544444433
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.84 E-value=9.6e-09 Score=81.90 Aligned_cols=133 Identities=17% Similarity=0.068 Sum_probs=76.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcC------CCeE-Eee-eCCcc------cccccccccccCC--CCcCchhHHHHH
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLG------YPAR-TYT-LNPKA------VSVIELYGVLNPE--TRDWYDGLLSNI 117 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~------~~i~-~~~-~~~~~------~~~~~l~g~~~~~--~~~~~~gi~~~~ 117 (233)
..+|+||||||||+++.++.-...... .... ... +.+.+ +.....+..+.+. ....++|..+++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~ 103 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLS 103 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHH
Confidence 589999999999999999865432110 0000 000 00000 0011111122221 234788988887
Q ss_pred HHHHhcCCC-CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 118 FRAVNKPLD-PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 118 ~~~~~~~~~-~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
.+++... ....+|+++++|||++++|+.....+.+....+. ..| ..+++.+|+...+. ...|+-.|
T Consensus 104 --~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g--------~tiIiiSH~~~~~~--~adrvi~i 170 (178)
T cd03239 104 --ALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHT--------SQFIVITLKKEMFE--NADKLIGV 170 (178)
T ss_pred --HHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC--------CEEEEEECCHHHHh--hCCeEEEE
Confidence 4443221 0013789999999999999998877766544332 122 57888888877653 45677777
Q ss_pred EEC
Q psy12735 197 YVD 199 (233)
Q Consensus 197 ~~~ 199 (233)
+..
T Consensus 171 ~~~ 173 (178)
T cd03239 171 LFV 173 (178)
T ss_pred EEe
Confidence 664
No 398
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.76 E-value=2e-08 Score=80.43 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=48.1
Q ss_pred EEEEcCCCCChHHHHHHHHh-hhhh-cCCCeEEe--eeCCccccccccccc---ccCCCCcCchhHHHHHHHHHhcCCCC
Q psy12735 55 TMIVGPTGGGKSVVINALVK-TSTV-LGYPARTY--TLNPKAVSVIELYGV---LNPETRDWYDGLLSNIFRAVNKPLDP 127 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~-~~~~-~~~~i~~~--~~~~~~~~~~~l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~ 127 (233)
++|+||||+||||++|.+.- .+-. .|..+--. .+.+-. .....++. .......|+.++.+.. .+....
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d-~il~~~~~~d~~~~~~s~fs~~~~~l~--~~l~~~-- 76 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD-RIFTRIGASDSLAQGLSTFMVEMKETA--NILKNA-- 76 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc-eEEEEeCCCCchhccccHHHHHHHHHH--HHHHhC--
Confidence 68999999999999999973 2212 22211110 011000 00011111 1122234555555422 222211
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.+|+++++|||+.+.|+.....+
T Consensus 77 --~~~~llllDEp~~g~d~~~~~~~ 99 (185)
T smart00534 77 --TENSLVLLDELGRGTSTYDGVAI 99 (185)
T ss_pred --CCCeEEEEecCCCCCCHHHHHHH
Confidence 37999999999999888754443
No 399
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.75 E-value=7.8e-08 Score=77.09 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCC-CcCc--hhHHHHHHHHHh
Q psy12735 46 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET-RDWY--DGLLSNIFRAVN 122 (233)
Q Consensus 46 ~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~-~~~~--~gi~~~~~~~~~ 122 (233)
...+..+..++|+||+||||||+++.|.+.+.+..+.+.+.+............++..+.. .... .+... +++...
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l 97 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD-LLRSAL 97 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH-HHHHHh
Confidence 3567889999999999999999999999998876666655332111111111222221111 1111 11222 222222
Q ss_pred cCCCCCCCCceEEEEeCCCCHHh
Q psy12735 123 KPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
+..|++++++|-.+...
T Consensus 98 ------R~~pd~i~igEir~~ea 114 (186)
T cd01130 98 ------RMRPDRIIVGEVRGGEA 114 (186)
T ss_pred ------ccCCCEEEEEccCcHHH
Confidence 25899999999987653
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.75 E-value=8.3e-08 Score=78.68 Aligned_cols=83 Identities=12% Similarity=-0.045 Sum_probs=49.9
Q ss_pred CCcCchhHHHHHHHH--HhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 106 TRDWYDGLLSNIFRA--VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 106 ~~~~~~gi~~~~~~~--~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
...++.|+.+++.-. ++.... .+|+++++|||++++|+.....+++....+....| ...+++.+|++.
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~---~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g-------~~~viiith~~~ 193 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQEL---TRCPFRVVDEINQGMDPTNERKVFDMLVETACKEG-------TSQYFLITPKLL 193 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhc---cCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCC-------CceEEEEchhhc
Confidence 357788988865322 222222 47899999999999999998887776554432212 135666666665
Q ss_pred ccChhhhhcceEEEEC
Q psy12735 184 YASPATVSRAGMVYVD 199 (233)
Q Consensus 184 ~~sPa~isr~~~v~~~ 199 (233)
..-. ..-|+.++.+.
T Consensus 194 ~~~~-~~~~~~v~~l~ 208 (213)
T cd03277 194 PGLN-YHEKMTVLCVY 208 (213)
T ss_pred cCCc-ccCceEEEEEe
Confidence 4432 22344444443
No 401
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.74 E-value=1.5e-07 Score=76.20 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=45.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhc-CCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~-~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.++|+||+||||||+++.+.+.+... ++.+.... ++...........+.+....+....+...++... .++|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aL------r~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPIEFVHESKRSLINQREVGLDTLSFENALKAAL------RQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCccccccCccceeeecccCCCccCHHHHHHHHh------cCCc
Confidence 47999999999999999988877543 33332221 1211111111122222111111111222222221 1479
Q ss_pred eEEEEeCCCCHHhH
Q psy12735 133 KYILFDGDVDALWI 146 (233)
Q Consensus 133 ~~lvlDep~~~~~~ 146 (233)
+++++||+.+....
T Consensus 76 d~ii~gEird~e~~ 89 (198)
T cd01131 76 DVILVGEMRDLETI 89 (198)
T ss_pred CEEEEcCCCCHHHH
Confidence 99999999876543
No 402
>KOG2355|consensus
Probab=98.73 E-value=2.6e-08 Score=80.04 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=88.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc--------------------------------cccc
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK--------------------------------AVSV 95 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~--------------------------------~~~~ 95 (233)
.+..+....+||.||||||||+|+|+|-.-..++.+++.+.++- .++.
T Consensus 36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa 115 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA 115 (291)
T ss_pred ccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccH
Confidence 45667789999999999999999999855434444444332220 1111
Q ss_pred ccc-cc--cccC------------C----CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 96 IEL-YG--VLNP------------E----TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 96 ~~l-~g--~~~~------------~----~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+ +| ..++ + -+..+||...++ +++.-+- ..=+.++|||.+-.+|.-....+++-.
T Consensus 116 e~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRV--QicMGLL---~PfkVLLLDEVTVDLDVlARadLLeFl 190 (291)
T KOG2355|consen 116 EHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRV--QICMGLL---KPFKVLLLDEVTVDLDVLARADLLEFL 190 (291)
T ss_pred HHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhh--HHHHhcc---cceeEEEeeeeEeehHHHHHHHHHHHH
Confidence 111 11 1111 0 123467777777 5554332 456789999999999998887777655
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC----------------CCCcchHHHHHHHh
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP----------------INLGYQPYWTRWVN 214 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~----------------~~~~~~~~~~swl~ 214 (233)
+.-|-..| .+++.-||=.+...-= -..++|+.. ...+....++||+.
T Consensus 191 keEce~Rg--------atIVYATHIFDGLe~W---pthl~yi~~Gkl~~~l~~~~i~e~~~~~nl~s~veswlr 253 (291)
T KOG2355|consen 191 KEECEQRG--------ATIVYATHIFDGLETW---PTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLSTVESWLR 253 (291)
T ss_pred HHHHhhcC--------cEEEEEeeeccchhhc---chhEEEecCCeeeeccccchhhhhhccchHHHHHHHHHH
Confidence 44444434 4555555544433210 123455543 23356788999997
No 403
>KOG0927|consensus
Probab=98.72 E-value=1e-08 Score=92.29 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.5
Q ss_pred CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
..+++|..-|+ ++|+..- ++|.+++||||+.++|.++..-+-+.
T Consensus 220 ~~~SgGwrmR~--aLAr~Lf---~kP~LLLLDEPtnhLDleA~~wLee~ 263 (614)
T KOG0927|consen 220 KDLSGGWRMRA--ALARALF---QKPDLLLLDEPTNHLDLEAIVWLEEY 263 (614)
T ss_pred hccCchHHHHH--HHHHHHh---cCCCEEEecCCccCCCHHHHHHHHHH
Confidence 35677777776 5666553 69999999999999999987665443
No 404
>KOG0060|consensus
Probab=98.71 E-value=2.2e-08 Score=90.82 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=68.2
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe-------------------------eeCC--------c
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY-------------------------TLNP--------K 91 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~-------------------------~~~~--------~ 91 (233)
|.-.+.+|+.+.|.||||||||+|+++++|+++..+|+++.. .++| +
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~ 533 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSK 533 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCcccccccc
Confidence 334456777899999999999999999999987665554321 1222 0
Q ss_pred ccc---cc------------ccccccc-CCCCcCch----hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHH
Q psy12735 92 AVS---VI------------ELYGVLN-PETRDWYD----GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151 (233)
Q Consensus 92 ~~~---~~------------~l~g~~~-~~~~~~~~----gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~ 151 (233)
..+ .. +..|-.+ +...+|.| |-.||+ .+|+..= .+|++.+|||.|++.+.+.-..
T Consensus 534 ~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL--a~ARLfy---~kPk~AiLDE~TSAv~~dvE~~ 608 (659)
T KOG0060|consen 534 SASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL--AFARLFY---HKPKFAILDECTSAVTEDVEGA 608 (659)
T ss_pred CCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH--HHHHHHh---cCCceEEeechhhhccHHHHHH
Confidence 110 00 1112222 33455644 888888 6666543 6999999999999987765444
Q ss_pred Hhh
Q psy12735 152 VMD 154 (233)
Q Consensus 152 ~l~ 154 (233)
+..
T Consensus 609 ~Yr 611 (659)
T KOG0060|consen 609 LYR 611 (659)
T ss_pred HHH
Confidence 443
No 405
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=2.1e-08 Score=81.65 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=61.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh--hcCCCeEEeeeCCcccc-cccccccc------cCCCCcCchhHHHHHHHHH
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST--VLGYPARTYTLNPKAVS-VIELYGVL------NPETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~--~~~~~i~~~~~~~~~~~-~~~l~g~~------~~~~~~~~~gi~~~~~~~~ 121 (233)
.++.++|+||||+||||+++++++..- ..|..+ ..... .+. ..+++..+ ......|+.|+.+.. .+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~v--pa~~~-~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~--~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFV--PAEYA-TLPIFNRLLSRLSNDDSMERNLSTFASEMSETA--YI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCc--chhhc-CccChhheeEecCCccccchhhhHHHHHHHHHH--HH
Confidence 345699999999999999999986532 222221 00110 011 11222111 112234566666432 22
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHh---H-HHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIEN---M-NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~---l-~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.... .+++++++|||..+.++.. + ..+++... .. +..+++.||+...+.
T Consensus 103 l~~~----~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~---~~---------~~~~i~~TH~~~l~~ 155 (204)
T cd03282 103 LDYA----DGDSLVLIDELGRGTSSADGFAISLAILECLI---KK---------ESTVFFATHFRDIAA 155 (204)
T ss_pred HHhc----CCCcEEEeccccCCCCHHHHHHHHHHHHHHHH---hc---------CCEEEEECChHHHHH
Confidence 2221 4789999999976665432 2 22232211 11 267788888777654
No 406
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.68 E-value=9e-07 Score=79.45 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC--CeEEeeeCCccccccccc-ccccC-CCCcCchhHHHHH
Q psy12735 42 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY--PARTYTLNPKAVSVIELY-GVLNP-ETRDWYDGLLSNI 117 (233)
Q Consensus 42 ~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~--~i~~~~~~~~~~~~~~l~-g~~~~-~~~~~~~gi~~~~ 117 (233)
+-++...+..++.+++.||+|+|||++++.++........ .+...... ...+..+++ |+.+. ....+.+|.+-++
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH-psySYeDFI~G~rP~~vgy~~~~G~f~~~ 262 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH-QSYSYEDFIQGYRPNGVGFRRKDGIFYNF 262 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec-ccccHHHHhcccCCCCCCeEecCchHHHH
Confidence 3455667778999999999999999999999876542211 12221222 223344444 33222 2346677877666
Q ss_pred HHHHhcCCCCCCCCceEEEEeCCCCHHhHH---hHHHHhhccc-----cccc----cCceEEEccCcceEEEEeCCcC--
Q psy12735 118 FRAVNKPLDPGSKERKYILFDGDVDALWIE---NMNSVMDDNK-----ILTL----ANGERIRLLAHCQLLFEVGDLQ-- 183 (233)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lvlDep~~~~~~~---~l~~~l~~~~-----~l~l----~~g~~i~~~~~~~~i~et~dl~-- 183 (233)
.++..... ..+.++++||---+.-.. .+.++++... .+.+ .+++.+.++.++.+|..+..-.
T Consensus 263 ~~~A~~~p----~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 263 CQQAKEQP----EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS 338 (459)
T ss_pred HHHHHhcc----cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc
Confidence 55543221 368999999964333222 2234444321 1111 1246788999999988664333
Q ss_pred --ccChhhhhcceEEEECCC
Q psy12735 184 --YASPATVSRAGMVYVDPI 201 (233)
Q Consensus 184 --~~sPa~isr~~~v~~~~~ 201 (233)
.+.+|+.-|+..+.+.+.
T Consensus 339 ~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 339 LAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred hhhccHHHHhhhheEEecCC
Confidence 689999999999999985
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.68 E-value=7.8e-09 Score=90.66 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=86.7
Q ss_pred HHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh--------hcCCCeEEee-----eCCcc-
Q psy12735 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST--------VLGYPARTYT-----LNPKA- 92 (233)
Q Consensus 27 ~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~--------~~~~~i~~~~-----~~~~~- 92 (233)
++++||.+.++.+ ++|+|+|||||||++++++|+.. +++|.+.+.. +-|..
T Consensus 399 lr~vNL~ikpGdv---------------vaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~ 463 (593)
T COG2401 399 LRNLNLEIKPGDV---------------VAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY 463 (593)
T ss_pred eeceeeEecCCCe---------------EEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccc
Confidence 5577777766665 99999999999999999998753 4455543311 11110
Q ss_pred ---c---cccc-----------------ccccc-----cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHH
Q psy12735 93 ---V---SVIE-----------------LYGVL-----NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDAL 144 (233)
Q Consensus 93 ---~---~~~~-----------------l~g~~-----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~ 144 (233)
+ +..+ ..|.. .....+.++|...++ ++|+..+ ..|..++.||-.+.+
T Consensus 464 Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~--KLAklla---erpn~~~iDEF~AhL 538 (593)
T COG2401 464 EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERA--KLAKLLA---ERPNVLLIDEFAAHL 538 (593)
T ss_pred ccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHH--HHHHHHh---cCCCcEEhhhhhhhc
Confidence 0 0000 01111 111235667777777 6666655 578999999999999
Q ss_pred hHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC---ccChhh
Q psy12735 145 WIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ---YASPAT 189 (233)
Q Consensus 145 ~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~---~~sPa~ 189 (233)
|..+...+....+.++.+-| .+++..||+.. .++|-+
T Consensus 539 D~~TA~rVArkiselaRe~g--------iTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 539 DELTAVRVARKISELAREAG--------ITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred CHHHHHHHHHHHHHHHHHhC--------CeEEEEecCHHHHhccCCce
Confidence 99988888777777766545 56666666543 445763
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.66 E-value=8.6e-08 Score=78.56 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
+.++|+||||+||||++|.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
No 409
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.66 E-value=4.3e-07 Score=90.55 Aligned_cols=173 Identities=20% Similarity=0.284 Sum_probs=126.4
Q ss_pred CCCChhHHHHHHHHHHH--------HCCCeehHHHHHHHHHHHHH-HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCC
Q psy12735 12 SRVSYPEFTAALETVLK--------QDNYEMVPVQVDKVVQMYET-MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP 82 (233)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~k~~ql~~~-l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~ 82 (233)
|.+-.+.+.++++-..+ +-.|.++|..-+..+++.++ .-++-.+.|-||+.||||++++-+++. .|.+
T Consensus 839 p~~p~~~yi~f~hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~---tghk 915 (4600)
T COG5271 839 PKVPDHSYIAFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARE---TGHK 915 (4600)
T ss_pred CCCCCccHHHHHHHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHH---hCcc
Confidence 44444455555554443 35577888666668888854 455667999999999999999999984 3433
Q ss_pred eEEeeeCCcc-cccccccccc-cCC--CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCC-CCHH-hHHhHHHHhhcc
Q psy12735 83 ARTYTLNPKA-VSVIELYGVL-NPE--TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD-VDAL-WIENMNSVMDDN 156 (233)
Q Consensus 83 i~~~~~~~~~-~~~~~l~g~~-~~~--~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep-~~~~-~~~~l~~~l~~~ 156 (233)
+.+++... .+.++.+|.+ ..+ .-.|..|.+--++| +..|+||||- .++. -.|.++.++|++
T Consensus 916 --fVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-----------~GyWIVLDELNLApTDVLEaLNRLLDDN 982 (4600)
T COG5271 916 --FVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-----------RGYWIVLDELNLAPTDVLEALNRLLDDN 982 (4600)
T ss_pred --EEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-----------cCcEEEeeccccCcHHHHHHHHHhhccc
Confidence 33455433 3466677754 222 34688888766655 5789999995 3444 448899999999
Q ss_pred ccccccCceEEEccCcceEEEEeCCcC-------ccChhhhhcceEEEECC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQ-------YASPATVSRAGMVYVDP 200 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~-------~~sPa~isr~~~v~~~~ 200 (233)
+.+..|..+.+-.+|.--.+|-|.++. ..|.|+-+|+--+|+++
T Consensus 983 RelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFdd 1033 (4600)
T COG5271 983 RELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDD 1033 (4600)
T ss_pred cceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhccc
Confidence 999999988888888878888898865 56999999999999986
No 410
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.62 E-value=1.6e-07 Score=81.27 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=68.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc--cccccccCCCCcCch--hHHHHHHHHHh
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI--ELYGVLNPETRDWYD--GLLSNIFRAVN 122 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~--~l~g~~~~~~~~~~~--gi~~~~~~~~~ 122 (233)
..+..+..++|+||+||||||++++|.+.+.+..+.+.+.. +..+... .......+....... +..+ +++...
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~L 215 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTPKD-LLQSCL 215 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCHHH-HHHHHh
Confidence 56778999999999999999999999998876655444432 1111111 111111111001111 1212 222211
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEE
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYV 198 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~ 198 (233)
.+.|+++++||+.+....+.+..+. .| +...+..+|..+ +..+ +.|...+..
T Consensus 216 ------r~~pd~ii~gE~r~~e~~~~l~a~~---------~g-------~~~~i~T~Ha~~-~~~~-~~Rl~~l~~ 267 (308)
T TIGR02788 216 ------RMRPDRIILGELRGDEAFDFIRAVN---------TG-------HPGSITTLHAGS-PEEA-FEQLALMVK 267 (308)
T ss_pred ------cCCCCeEEEeccCCHHHHHHHHHHh---------cC-------CCeEEEEEeCCC-HHHH-HHHHHHHhh
Confidence 2589999999999854322222211 12 123466677776 3333 677766644
No 411
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=1.4e-06 Score=65.33 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=64.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhH-HHHHHHHHhcCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGL-LSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi-~~~~~~~~~~~~~~~~~ 130 (233)
+..+.|+||+|+||||+++.+.+.+...+.++....... ........ ...+. .......... ..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~ 83 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD--LLEGLVVA--------ELFGHFLVRLLFELAE-----KA 83 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh--hhhhhHHH--------HHhhhhhHhHHHHhhc-----cC
Confidence 678999999999999999999987753344433322211 00000000 00000 0111111111 13
Q ss_pred CceEEEEeCCCCH--HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC--ccChhhhhcc-eEEEE
Q psy12735 131 ERKYILFDGDVDA--LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ--YASPATVSRA-GMVYV 198 (233)
Q Consensus 131 ~~~~lvlDep~~~--~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~--~~sPa~isr~-~~v~~ 198 (233)
.+.++++||.-.. .....+...+....... ....++.+++.+++.. ...+.+.+|| ..+.+
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 6789999997543 22233333333321110 1224577777766555 5667778888 44444
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.60 E-value=2.7e-07 Score=76.08 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=52.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCeEE--eeeCCcccccccccccccCCCCcCchhHHHHHHH-HHhcCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPART--YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFR-AVNKPL 125 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i~~--~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~-~~~~~~ 125 (233)
.++.++|.||||+||||+++.++-.. ...|..+-- ..+.+ .......+|.-+......+.+..+.... .+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~-~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~ 107 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPI-VDCILARVGASDSQLKGVSTFMAEMLETAAILKSA 107 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEec-cceeEeeeccccchhcCcChHHHHHHHHHHHHHhC
Confidence 45569999999999999999987421 122211100 01110 0001112222222223345555554411 222211
Q ss_pred CCCCCCceEEEEeCC---CCHHhHHhHHHH
Q psy12735 126 DPGSKERKYILFDGD---VDALWIENMNSV 152 (233)
Q Consensus 126 ~~~~~~~~~lvlDep---~~~~~~~~l~~~ 152 (233)
.++.++++||| ++++|...+...
T Consensus 108 ----~~~sLvLLDEp~~gT~~lD~~~~~~~ 133 (222)
T cd03285 108 ----TENSLIIIDELGRGTSTYDGFGLAWA 133 (222)
T ss_pred ----CCCeEEEEecCcCCCChHHHHHHHHH
Confidence 47999999999 899998877543
No 413
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=1.3e-07 Score=74.90 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=32.1
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLA 171 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~ 171 (233)
..-+.+||||-+++-+..+-+++...+.+..++++.|+.+|
T Consensus 146 ~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATH 186 (233)
T COG3910 146 GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186 (233)
T ss_pred cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45689999999999998888888887877777765555444
No 414
>KOG0064|consensus
Probab=98.55 E-value=4.1e-08 Score=88.39 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=61.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe----------------------EEeeeCCccc--------cccc
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA----------------------RTYTLNPKAV--------SVIE 97 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i----------------------~~~~~~~~~~--------~~~~ 97 (233)
.+..|..+.|+||||||||+|.++|.|+++..+|.. +-..++|.+. +-.+
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~d 583 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQD 583 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHH
Confidence 345566799999999999999999999886444322 1122334221 1111
Q ss_pred cccc--------ccCC------CCcCc----hhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 98 LYGV--------LNPE------TRDWY----DGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 98 l~g~--------~~~~------~~~~~----~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
+... .-|. -..|+ +|..+++ .+|+..= ++|++.+|||.+++.-++.-..+++.
T Consensus 584 L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~--~mARm~y---HrPkyalLDEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 584 LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM--GMARMFY---HRPKYALLDECTSAVSIDVEGKIFQA 654 (728)
T ss_pred HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH--HHHHHHh---cCcchhhhhhhhcccccchHHHHHHH
Confidence 1100 0010 12343 4777777 4444332 58999999999998766655555544
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.54 E-value=7.7e-08 Score=69.96 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=39.6
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCCcCchhHHHHH
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETRDWYDGLLSNI 117 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~~~~~gi~~~~ 117 (233)
..++.++|+||||||||||++++. .+.+.+.+.+....+ ..++.++..|. .+.+.+.+|+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~Ni 75 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLNI 75 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhhc
Confidence 446679999999999999999986 445666555443322 22344545443 5666666666
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.54 E-value=5.4e-07 Score=74.01 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
+.++|+|||||||||++|.+++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56899999999999999999753
No 417
>KOG0062|consensus
Probab=98.54 E-value=3.1e-08 Score=88.81 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=74.0
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe----------------eeCCcccc-------------ccc--
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY----------------TLNPKAVS-------------VIE-- 97 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~----------------~~~~~~~~-------------~~~-- 97 (233)
...-..++++|++|+||||++|++.+...+..+.+... ..+..+++ ...
T Consensus 387 ~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl 466 (582)
T KOG0062|consen 387 RESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHL 466 (582)
T ss_pred cchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHH
Confidence 33444589999999999999999998776443322110 01111110 011
Q ss_pred -cccc----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCc
Q psy12735 98 -LYGV----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172 (233)
Q Consensus 98 -l~g~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~ 172 (233)
.+|. ..+.-...++|+..++ .+|...- ++|.++|||||++.+|.+++..+-.. +..-+|-+++++|+
T Consensus 467 ~~~Gl~g~la~~si~~LSGGQKsrv--afA~~~~---~~PhlLVLDEPTNhLD~dsl~AL~~A---l~~F~GGVv~VSHd 538 (582)
T KOG0062|consen 467 GSFGLSGELALQSIASLSGGQKSRV--AFAACTW---NNPHLLVLDEPTNHLDRDSLGALAKA---LKNFNGGVVLVSHD 538 (582)
T ss_pred HhcCCCchhhhccccccCCcchhHH--HHHHHhc---CCCcEEEecCCCccccHHHHHHHHHH---HHhcCCcEEEEECc
Confidence 1221 1122245788988888 4443332 58999999999999999998776443 23345766666666
Q ss_pred ceEE
Q psy12735 173 CQLL 176 (233)
Q Consensus 173 ~~~i 176 (233)
.+++
T Consensus 539 ~~fi 542 (582)
T KOG0062|consen 539 EEFI 542 (582)
T ss_pred HHHH
Confidence 5544
No 418
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=5.2e-08 Score=94.76 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=51.9
Q ss_pred CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
....+++|..+++ .+++.......+|.+++||||++++|+.....+++....+.-. | ..+|+.+||+..
T Consensus 825 ~~~tLSgGe~QRl--~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G--------~TVIvi~H~~~~ 893 (924)
T TIGR00630 825 PATTLSGGEAQRI--KLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-G--------NTVVVIEHNLDV 893 (924)
T ss_pred ccccCCHHHHHHH--HHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHHH
Confidence 3456777888887 4444433111258999999999999999988887766555322 3 466677777765
Q ss_pred cChhhhhcceEEEEC
Q psy12735 185 ASPATVSRAGMVYVD 199 (233)
Q Consensus 185 ~sPa~isr~~~v~~~ 199 (233)
+.- .-.++.++
T Consensus 894 i~~----aD~ii~Lg 904 (924)
T TIGR00630 894 IKT----ADYIIDLG 904 (924)
T ss_pred HHh----CCEEEEec
Confidence 532 23555553
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.50 E-value=1.4e-07 Score=90.55 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh-hhhcCC-CeEEeeeCCcccc-ccccccc------ccCCCCcCchhHHHHHHHHHhc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT-STVLGY-PARTYTLNPKAVS-VIELYGV------LNPETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~-~~~~~~-~i~~~~~~~~~~~-~~~l~g~------~~~~~~~~~~gi~~~~~~~~~~ 123 (233)
+.++|+||||+||||++|++++. +.+..| .+....- ..+. ..+.+.. +.+....|+.++.+.. .+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~--~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~--~il~ 398 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH--SEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS--AILS 398 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc--ccccchhheeeecChHhHHhhhhhHHHHHHHHHH--HHHH
Confidence 67999999999999999999987 222222 2211000 0000 1111111 1122234566666544 3333
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.. ..+.++++|||..+.|+.....+
T Consensus 399 ~~----~~~sLvLlDE~g~GtD~~eg~al 423 (771)
T TIGR01069 399 KT----TENSLVLFDELGAGTDPDEGSAL 423 (771)
T ss_pred hc----CCCcEEEecCCCCCCCHHHHHHH
Confidence 22 37899999999998888765444
No 420
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.45 E-value=1.4e-07 Score=84.89 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEeeeC
Q psy12735 18 EFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYTLN 89 (233)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~~~ 89 (233)
++++-++++++++++.+.++.+ ++|+|||||||||+++ ++...+..| .+.+.+..
T Consensus 13 ~Ie~~l~~vL~~Vsl~i~~GEi---------------v~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 13 KIQTDLERILVKFNKELPSSSL---------------LFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHHHHHHHHhCCceeecCCCE---------------EEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 4677777888899998877776 9999999999999999 455544444 57665544
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.42 E-value=9.2e-08 Score=97.66 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 106 TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 106 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
...+++|..+++ .+++.......+|++++||||++++|......+++....+.-. | ..+++.+|++..+
T Consensus 807 ~~tLSGGE~QRV--~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G--------~TVIiIsHdl~~i 875 (1809)
T PRK00635 807 LSSLSGGEIQRL--KLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-G--------HTVVIIEHNMHVV 875 (1809)
T ss_pred cccCCHHHHHHH--HHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHHHH
Confidence 345677777777 4444432101479999999999999999988888776655433 3 4566666777655
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.39 E-value=1.1e-06 Score=72.39 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=26.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHh-hhhhcCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVK-TSTVLGYP 82 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~-~~~~~~~~ 82 (233)
..++.++|+||||+||||+++.+++ .+.+..|.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~ 62 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 4566799999999999999999998 44444444
No 423
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.38 E-value=1.9e-07 Score=91.10 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=49.4
Q ss_pred CCcCchhHHHHHHHHHhcCCCCCCCCc---eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 106 TRDWYDGLLSNIFRAVNKPLDPGSKER---KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 106 ~~~~~~gi~~~~~~~~~~~~~~~~~~~---~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
...+++|..+++ .+++... .+| ++++||||++++|......+++....+.-. | ..+|+.+||+
T Consensus 828 ~~tLSgGEkQRl--~LAraL~---~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G--------~TVIiitH~~ 893 (943)
T PRK00349 828 ATTLSGGEAQRV--KLAKELS---KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-G--------NTVVVIEHNL 893 (943)
T ss_pred cccCCHHHHHHH--HHHHHHh---cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEecCH
Confidence 345677777777 4444443 244 899999999999999988887765554322 3 4666667777
Q ss_pred CccChhhhhcceEEEE
Q psy12735 183 QYASPATVSRAGMVYV 198 (233)
Q Consensus 183 ~~~sPa~isr~~~v~~ 198 (233)
..+.- ...++.+
T Consensus 894 ~~i~~----aD~ii~L 905 (943)
T PRK00349 894 DVIKT----ADWIIDL 905 (943)
T ss_pred HHHHh----CCEEEEe
Confidence 66532 2355555
No 424
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.38 E-value=4.2e-06 Score=83.88 Aligned_cols=146 Identities=18% Similarity=0.312 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc-ccccccccccccCCC----CcCchh
Q psy12735 38 QVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK-AVSVIELYGVLNPET----RDWYDG 112 (233)
Q Consensus 38 ~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~-~~~~~~l~g~~~~~~----~~~~~g 112 (233)
..-.+....++|+.++++.+=|.+|.|||+|+..|++. .|.+. .+++.. ..++-+++|..-+.. ..|.|.
T Consensus 1529 T~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~---tG~kl--iRINLSeQTdL~DLfGsd~Pve~~Gef~w~da 1603 (4600)
T COG5271 1529 TTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARK---TGKKL--IRINLSEQTDLCDLFGSDLPVEEGGEFRWMDA 1603 (4600)
T ss_pred hHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHH---hcCce--EEeeccccchHHHHhCCCCCcccCceeEeccc
Confidence 33477888899999999999999999999999999984 34432 233332 234556787654432 357666
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEE-EccCcceEEEEeCCcC------
Q psy12735 113 LLSNIFRAVNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERI-RLLAHCQLLFEVGDLQ------ 183 (233)
Q Consensus 113 i~~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i-~~~~~~~~i~et~dl~------ 183 (233)
-+-+.+| +..|++|||-. +..-.|.++..+|..+....|.-+.. ...+++++ |-+.++.
T Consensus 1604 pfL~amr-----------~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrV-FAaqNPq~qggGR 1671 (4600)
T COG5271 1604 PFLHAMR-----------DGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRV-FAAQNPQDQGGGR 1671 (4600)
T ss_pred HHHHHhh-----------cCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeee-eeecCchhcCCCc
Confidence 5544433 67899999974 45577899999999888888876544 44455554 4466665
Q ss_pred -ccChhhhhcceEEEECC
Q psy12735 184 -YASPATVSRAGMVYVDP 200 (233)
Q Consensus 184 -~~sPa~isr~~~v~~~~ 200 (233)
....+++.|+++|||+.
T Consensus 1672 KgLPkSF~nRFsvV~~d~ 1689 (4600)
T COG5271 1672 KGLPKSFLNRFSVVKMDG 1689 (4600)
T ss_pred ccCCHHHhhhhheEEecc
Confidence 56788999999999995
No 425
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.37 E-value=6.8e-06 Score=79.26 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=84.7
Q ss_pred HHHHHHHHHCCCeehHHHHHHHHHHHHHH-----hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc
Q psy12735 21 AALETVLKQDNYEMVPVQVDKVVQMYETM-----LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV 95 (233)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~k~~ql~~~l-----~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~ 95 (233)
...++++.+..|-..+ ..+.++++.... ..+..++++||+|+||||+.+.+++........+...+. .+.
T Consensus 314 ~~~~~~l~~~~~g~~~-vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~----~d~ 388 (784)
T PRK10787 314 RQAQEILDTDHYGLER-VKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV----RDE 388 (784)
T ss_pred HHHHHHhhhhccCHHH-HHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCC----CCH
Confidence 3455666665555332 223444444322 246789999999999999999999976432222221111 111
Q ss_pred ccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC--CHHh----HHhHHHHhhcccccccc--CceEE
Q psy12735 96 IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV--DALW----IENMNSVMDDNKILTLA--NGERI 167 (233)
Q Consensus 96 ~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~----~~~l~~~l~~~~~l~l~--~g~~i 167 (233)
.++.|.. ..|.+..-.++.+.+.... ....++++||.- .... ...+-.++|........ ..+ +
T Consensus 389 ~~i~g~~----~~~~g~~~G~~~~~l~~~~----~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~-~ 459 (784)
T PRK10787 389 AEIRGHR----RTYIGSMPGKLIQKMAKVG----VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLE-V 459 (784)
T ss_pred HHhccch----hccCCCCCcHHHHHHHhcC----CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccc-c
Confidence 2222221 1122212122222232221 133478999972 2211 23455555542221111 111 1
Q ss_pred Ecc-CcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 168 RLL-AHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 168 ~~~-~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
... .++.+|. |.+...++|++++||-++.+.+-.
T Consensus 460 ~~dls~v~~i~-TaN~~~i~~aLl~R~~ii~~~~~t 494 (784)
T PRK10787 460 DYDLSDVMFVA-TSNSMNIPAPLLDRMEVIRLSGYT 494 (784)
T ss_pred cccCCceEEEE-cCCCCCCCHHHhcceeeeecCCCC
Confidence 111 3445555 556567999999999998887643
No 426
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.37 E-value=5.8e-06 Score=61.58 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceE
Q psy12735 55 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKY 134 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 134 (233)
+.|.||+|+||||+++.++..+. .+ +..++.. ++.+... .. ....+..++++.... ..|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~--~~~i~~~-----~~~~~~~---~~-~~~~i~~~~~~~~~~-----~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FP--FIEIDGS-----ELISSYA---GD-SEQKIRDFFKKAKKS-----AKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SE--EEEEETT-----HHHTSST---TH-HHHHHHHHHHHHHHT-----STSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---cc--ccccccc-----ccccccc---cc-ccccccccccccccc-----cccee
Confidence 57999999999999999999753 22 2222221 1111100 00 011222223332221 13789
Q ss_pred EEEeCCC--CHHh--------HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhh-hcceEEE
Q psy12735 135 ILFDGDV--DALW--------IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATV-SRAGMVY 197 (233)
Q Consensus 135 lvlDep~--~~~~--------~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~i-sr~~~v~ 197 (233)
+++|+-- .... ...+..++......... .+.+.+++.+.+...+.|++. +||....
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-------~~~~~vI~ttn~~~~i~~~l~~~rf~~~i 128 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK-------NSRVIVIATTNSPDKIDPALLRSRFDRRI 128 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT-------SSSEEEEEEESSGGGSCHHHHSTTSEEEE
T ss_pred eeeccchhcccccccccccccccccceeeecccccccc-------cccceeEEeeCChhhCCHhHHhCCCcEEE
Confidence 9999742 1111 12234443332221111 345788999999999999999 9987654
No 427
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=3.6e-06 Score=64.72 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 55 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
++|.||||+||||+++.+++.....++.+.+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 68999999999999999998776666676655443
No 428
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.34 E-value=1.2e-05 Score=63.13 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=70.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc-----ccccccccccccCCCC--cC-chhHHHHHHHHH
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK-----AVSVIELYGVLNPETR--DW-YDGLLSNIFRAV 121 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~-----~~~~~~l~g~~~~~~~--~~-~~gi~~~~~~~~ 121 (233)
.-.+...+.||.|+||+|++..+++.+--........+.... .....++. .+..... .. .+.+. .+...+
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~-~~~~~~~~~~i~i~~ir-~i~~~~ 94 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFI-IIKPDKKKKSIKIDQIR-EIIEFL 94 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEE-EEETTTSSSSBSHHHHH-HHHHHC
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceE-EEecccccchhhHHHHH-HHHHHH
Confidence 335678999999999999999998865322111000000000 00011111 1111111 11 12333 332333
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
..... ....+++++|+. +.+-.+..+.++..... -+.++.+++.+.+++.+-|...|||-.+++.+
T Consensus 95 ~~~~~--~~~~KviiI~~a-d~l~~~a~NaLLK~LEe----------pp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 95 SLSPS--EGKYKVIIIDEA-DKLTEEAQNALLKTLEE----------PPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp TSS-T--TSSSEEEEEETG-GGS-HHHHHHHHHHHHS----------TTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred HHHHh--cCCceEEEeehH-hhhhHHHHHHHHHHhcC----------CCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 22211 246899999875 23344455555432111 13468999999999999999999999999986
No 429
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.33 E-value=3.5e-06 Score=73.96 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
..+..++|.||+||||||+++.+.+.+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 34667899999999999999999887653
No 430
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.8e-06 Score=77.13 Aligned_cols=135 Identities=12% Similarity=0.147 Sum_probs=72.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCcc--c---ccccccccccCCCCcCchhHHHHHHHHHhcCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPKA--V---SVIELYGVLNPETRDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~~--~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~ 125 (233)
.+.+++.||.|+||||+.+++++.+.-..+. ..-.+....+ + ...+++. ++.....-.+-+.+ +++......
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE-IDAas~rgVDdIRe-LIe~a~~~P 115 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE-MDAASNRGVDEMAA-LLERAVYAP 115 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE-ecccccccHHHHHH-HHHHHHhcc
Confidence 4567899999999999999999876422110 0000000000 0 0011111 11111111111222 222221111
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
. ..+.+++++||.- .+..+..+.++..... -+.+++||+.+++...+.|.++|||-.+.+..-
T Consensus 116 ~--~gr~KVIIIDEah-~LT~~A~NALLKtLEE----------PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 116 V--DARFKVYMIDEVH-MLTNHAFNAMLKTLEE----------PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred c--cCCceEEEEeChh-hCCHHHHHHHHHHHHh----------cCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 1 1367899999962 3333444444432111 123589999999999999999999999999864
No 431
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=3.3e-06 Score=73.53 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=54.9
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHHH
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTRW 212 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~sw 212 (233)
.=++++||.++++.+..+.++...... +.+..+|+.+|+...+.|...|||-.+.+.+-. ..-+.+|
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep----------~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~---~~~~~~~ 180 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEP----------PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPS---HEEALAY 180 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhC----------cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCC---HHHHHHH
Confidence 335578999999999998887754332 123679999999999999999999999998733 3467788
Q ss_pred Hhhc
Q psy12735 213 VNLN 216 (233)
Q Consensus 213 l~~~ 216 (233)
|...
T Consensus 181 L~~~ 184 (325)
T PRK08699 181 LRER 184 (325)
T ss_pred HHhc
Confidence 8754
No 432
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=70.94 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEeeeCCcc--c---ccccccccccCCCCcCchhHHHHHHHHHhcCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYTLNPKA--V---SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~~~~~~--~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~ 126 (233)
+.+.+.||+|+||||+++.+++.+....+ ...-.+....+ + ...+++. ++.......+.+ ..+...+....
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~-~~~~~~~~v~~i-r~i~~~~~~~p- 115 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE-IDAASRTKVEEM-REILDNIYYSP- 115 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE-ecccccCCHHHH-HHHHHHHhcCc-
Confidence 45789999999999999999987642111 00000000000 0 0001110 111111111222 12222221111
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC-cc
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL-GY 205 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~-~~ 205 (233)
...+.+++++||. +.+.....+.++..... .+.++.+++.++++..+.|+..|||-.+.+.+-.. .+
T Consensus 116 -~~~~~kviIIDEa-~~l~~~a~naLLk~lEe----------~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el 183 (363)
T PRK14961 116 -SKSRFKVYLIDEV-HMLSRHSFNALLKTLEE----------PPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKI 183 (363)
T ss_pred -ccCCceEEEEECh-hhcCHHHHHHHHHHHhc----------CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHH
Confidence 0135789999995 33333334444432111 12357888888999999999999999998887433 33
Q ss_pred hHHHHHHHh
Q psy12735 206 QPYWTRWVN 214 (233)
Q Consensus 206 ~~~~~swl~ 214 (233)
..++..++.
T Consensus 184 ~~~L~~~~~ 192 (363)
T PRK14961 184 FNFLKYILI 192 (363)
T ss_pred HHHHHHHHH
Confidence 334444443
No 433
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.5e-06 Score=75.29 Aligned_cols=135 Identities=12% Similarity=0.169 Sum_probs=71.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc-----ccccccccccCCCCcCchhHHHHHHHHHhcCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV-----SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~-----~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~ 126 (233)
.+...+.||+|+||||+++++++.+...+......+....+. ...+++ .++.....-.+.+.+ +...+.....
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-el~~~~~~~vd~iR~-l~~~~~~~p~ 113 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-EIDAASNNSVEDVRD-LREKVLLAPL 113 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-EecccccCCHHHHHH-HHHHHhhccc
Confidence 345699999999999999999987753221110001100000 000111 011110000111221 2122221111
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
...++++++||+- .+..+.++.++..... .+.+..+|+.+++...+.|...|||..+.+.+-
T Consensus 114 --~~~~kVVIIDEad-~ls~~a~naLLk~LEe----------p~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~l 175 (504)
T PRK14963 114 --RGGRKVYILDEAH-MMSKSAFNALLKTLEE----------PPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175 (504)
T ss_pred --cCCCeEEEEECcc-ccCHHHHHHHHHHHHh----------CCCCEEEEEEcCChhhCChHHhcceEEEEecCC
Confidence 2478899999983 3333444444433211 123467788888888999999999999999863
No 434
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.7e-05 Score=70.73 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=78.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc-----ccccccccccccCCC-CcCchhHHHHHHHHHhcCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK-----AVSVIELYGVLNPET-RDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~-----~~~~~~l~g~~~~~~-~~~~~gi~~~~~~~~~~~~ 125 (233)
.+...+.||+|+||||+.+.+++.+.-......--+.... .-+..++. ++.++. ....+.+. .+.+.+....
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~-~i~~~~~~i~i~~iR-~l~~~~~~~p 113 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVR-VVAPEGLSIGVDEVR-ELVTIAARRP 113 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EeccccccCCHHHHH-HHHHHHHhCc
Confidence 4568899999999999999999865322110000000000 00000110 111111 11112222 2333332211
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcc
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGY 205 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~ 205 (233)
. ....+++++|+. +.+.....+.++..... .+.+..+|+.+++...+.|+..|||-.+++.+-..
T Consensus 114 ~--~~~~kViiIDea-d~m~~~aanaLLk~LEe----------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~-- 178 (394)
T PRK07940 114 S--TGRWRIVVIEDA-DRLTERAANALLKAVEE----------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSV-- 178 (394)
T ss_pred c--cCCcEEEEEech-hhcCHHHHHHHHHHhhc----------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCH--
Confidence 1 236778888865 33444455555543211 12346788889999999999999999999987532
Q ss_pred hHHHHHHHhh
Q psy12735 206 QPYWTRWVNL 215 (233)
Q Consensus 206 ~~~~~swl~~ 215 (233)
.-+..|+..
T Consensus 179 -~~i~~~L~~ 187 (394)
T PRK07940 179 -EAVAEVLVR 187 (394)
T ss_pred -HHHHHHHHH
Confidence 346778863
No 435
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=5e-05 Score=66.01 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=75.4
Q ss_pred HHHHHhhcc--eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCC---CcC---------c
Q psy12735 45 MYETMLTRH--STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET---RDW---------Y 110 (233)
Q Consensus 45 l~~~l~~~~--~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~---~~~---------~ 110 (233)
|...+..+. .+.+.||+|+||||+++.+++.+...+.......++..... .+........+ ..+ .
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF-DQGKKYLVEDPRFAHFLGTDKRIRSSK 105 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh-hcchhhhhcCcchhhhhhhhhhhccch
Confidence 334444554 68999999999999999998866432211111112211100 00000000000 000 0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH---hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 111 DGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE---NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 111 ~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~---~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
...+..+.+..+.... ...+.+++++||+- .+... .+...++.. +.+.++|+.+++....-|
T Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~vlilDe~~-~l~~~~~~~L~~~le~~-------------~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 106 IDNFKHVLKEYASYRP-LSADYKTILLDNAE-ALREDAQQALRRIMEQY-------------SRTCRFIIATRQPSKLIP 170 (337)
T ss_pred HHHHHHHHHHHHhcCC-CCCCCcEEEEeCcc-cCCHHHHHHHHHHHHhc-------------cCCCeEEEEeCChhhCch
Confidence 1122223222222111 01356899999972 22222 233333221 123567777766677778
Q ss_pred hhhhcceEEEECCCCC-cchHHHHHHHh
Q psy12735 188 ATVSRAGMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 188 a~isr~~~v~~~~~~~-~~~~~~~swl~ 214 (233)
.+.+||..+.+.+-.- .+..++..++.
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 8889999998876432 33444444443
No 436
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.29 E-value=3.7e-06 Score=74.07 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=50.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhc--CCCeEEeeeCCcccccccc---cccccCCC-----CcCchhHHHHHHH
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVL--GYPARTYTLNPKAVSVIEL---YGVLNPET-----RDWYDGLLSNIFR 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~--~~~i~~~~~~~~~~~~~~l---~g~~~~~~-----~~~~~gi~~~~~~ 119 (233)
.++..++|+||+||||||+++.+.+.+... ++...+..-+|-.+..... .+.+.|.. ..|.+++...+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aL-- 209 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNAL-- 209 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHh--
Confidence 367789999999999999999999987432 2212222223322222221 12233321 12333333322
Q ss_pred HHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 120 AVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
.+.|+++++.|..+.....
T Consensus 210 ---------R~~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 210 ---------RRKPHAILVGEARDAETIS 228 (358)
T ss_pred ---------ccCCCEEeeeeeCCHHHHH
Confidence 2589999999988776553
No 437
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.27 E-value=1.8e-05 Score=76.50 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=70.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch---hHHHHHHHHHhcCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD---GLLSNIFRAVNKPLDP 127 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~---gi~~~~~~~~~~~~~~ 127 (233)
.+..++++||+|+||||+.+.+++.+......+...+. .+..++.|.. ..|.+ |-....+....
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~----~~~~~i~g~~----~~~~g~~~g~i~~~l~~~~----- 412 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGV----RDEAEIRGHR----RTYVGAMPGRIIQGLKKAK----- 412 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCc----ccHHHHcCCC----CceeCCCCchHHHHHHHhC-----
Confidence 35579999999999999999999976432211111111 0111222211 11111 22222222211
Q ss_pred CCCCceEEEEeCCCCH------HhHHhHHHHhhcc--ccccccC-ceEEEccCcceEEEEeCCcCccChhhhhcceEEEE
Q psy12735 128 GSKERKYILFDGDVDA------LWIENMNSVMDDN--KILTLAN-GERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYV 198 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~------~~~~~l~~~l~~~--~~l~l~~-g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~ 198 (233)
....++++||--.. .-...+-.+++.. ..+.-.. +..+.. .++-+++-+..+..+.|++.+||.++.+
T Consensus 413 --~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~~i~~~L~~R~~vi~~ 489 (775)
T TIGR00763 413 --TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSIDTIPRPLLDRMEVIEL 489 (775)
T ss_pred --cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCchhCCHHHhCCeeEEec
Confidence 12348999994211 1122344445431 1111010 111111 2455677677788899999999999988
Q ss_pred CCCC
Q psy12735 199 DPIN 202 (233)
Q Consensus 199 ~~~~ 202 (233)
.+-.
T Consensus 490 ~~~~ 493 (775)
T TIGR00763 490 SGYT 493 (775)
T ss_pred CCCC
Confidence 8743
No 438
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=4.9e-06 Score=77.75 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=74.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCC--C--eEEe--eeCCcc--c---ccccccccccCCCCcCchhHHHHHHHH
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGY--P--ARTY--TLNPKA--V---SVIELYGVLNPETRDWYDGLLSNIFRA 120 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~--~--i~~~--~~~~~~--~---~~~~l~g~~~~~~~~~~~gi~~~~~~~ 120 (233)
.|...+.||.|+||||+.+++++.+.-.+. . +... +....+ + +..+++. ++.....-.+-+.+.+ ..
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviE-IdAas~~gVDdIReLi-e~ 115 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIE-MDAASNRGVDEMAQLL-DK 115 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceE-ecccccCCHHHHHHHH-HH
Confidence 456799999999999999999987753110 0 0000 000000 0 0111111 1111111112222222 22
Q ss_pred HhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 121 VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 121 ~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
..... .....+++++||. +.+.....+.+|..... -+.++.||+.|++...+.|..+|||-.+.+..
T Consensus 116 ~~~~P--~~gr~KViIIDEa-h~Ls~~AaNALLKTLEE----------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ 182 (700)
T PRK12323 116 AVYAP--TAGRFKVYMIDEV-HMLTNHAFNAMLKTLEE----------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQ 182 (700)
T ss_pred HHhch--hcCCceEEEEECh-HhcCHHHHHHHHHhhcc----------CCCCceEEEEeCChHhhhhHHHHHHHhcccCC
Confidence 11111 1236789999986 23334455665543211 13468999999999999999999999999986
Q ss_pred CC
Q psy12735 201 IN 202 (233)
Q Consensus 201 ~~ 202 (233)
-.
T Consensus 183 ls 184 (700)
T PRK12323 183 MP 184 (700)
T ss_pred CC
Confidence 43
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.26 E-value=1e-06 Score=83.00 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeC
Q psy12735 106 TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG 180 (233)
Q Consensus 106 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~ 180 (233)
....++|-.||+ ++|..+.-......+.+||||+.++-.+-...+++-...|.-.+.+++-+.||+.+|-.-.
T Consensus 820 atTLSGGEaQRv--KLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 820 ATTLSGGEAQRV--KLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred cccccchHHHHH--HHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecC
Confidence 345667777776 4443222112356899999999999777777777777777777888888999998887543
No 440
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=2.3e-05 Score=76.38 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=76.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--CcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~--~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+.++||+|+|||.+.+.|+..+-.....+....+. ....+...++|.-+.....-.+|.+...+++ ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---------~p 668 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR---------KP 668 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh---------CC
Confidence 378999999999999999998764222222211111 1112223343321111011135666655553 24
Q ss_pred ceEEEEeCC--CCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc---------------------------
Q psy12735 132 RKYILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL--------------------------- 182 (233)
Q Consensus 132 ~~~lvlDep--~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl--------------------------- 182 (233)
..+++|||- .++.....+-+++++. .+.-..|..+...+ .-+|+ |+|+
T Consensus 669 ~svvllDEieka~~~v~~~Llq~ld~g-~l~d~~Gr~vd~~n-~iiI~-TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (852)
T TIGR03345 669 YSVVLLDEVEKAHPDVLELFYQVFDKG-VMEDGEGREIDFKN-TVILL-TSNAGSDLIMALCADPETAPDPEALLEALRP 745 (852)
T ss_pred CcEEEEechhhcCHHHHHHHHHHhhcc-eeecCCCcEEeccc-cEEEE-eCCCchHHHHHhccCcccCcchHHHHHHHHH
Confidence 679999986 3333334445555553 44555666666653 33333 4333
Q ss_pred ---CccChhhhhcceEEEECCC
Q psy12735 183 ---QYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 183 ---~~~sPa~isr~~~v~~~~~ 201 (233)
....|++++||-+|.+.+-
T Consensus 746 ~~~~~f~PEflnRi~iI~F~pL 767 (852)
T TIGR03345 746 ELLKVFKPAFLGRMTVIPYLPL 767 (852)
T ss_pred HHHHhccHHHhcceeEEEeCCC
Confidence 1257999999999999874
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.25 E-value=2.8e-06 Score=70.44 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=24.7
Q ss_pred HhhcceEEEEcCCCCChHHH-HHHHHhhhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVV-INALVKTSTV 78 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTl-ik~L~~~~~~ 78 (233)
+..+..++|+|++||||||+ .+.+.+....
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~ 51 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45677899999999999999 5888876543
No 442
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.23 E-value=1.9e-06 Score=67.29 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCeehHHHH---HHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 22 ALETVLKQDNYEMVPVQV---DKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~---~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...+.+++++|.+..... +.+-+|.+.++. +.++++|+||+|||||+|.|.+..
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456778899998654443 234455555555 999999999999999999998753
No 443
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=73.58 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=74.8
Q ss_pred HHHHHhhc---ceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCc-----ccccccccccccCCCCcCchhHHH
Q psy12735 45 MYETMLTR---HSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPK-----AVSVIELYGVLNPETRDWYDGLLS 115 (233)
Q Consensus 45 l~~~l~~~---~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~-----~~~~~~l~g~~~~~~~~~~~gi~~ 115 (233)
|...+..+ +..++.||.|+||||+.+.+++.+....+. ..-.+.... .-+..+++.. +.....=.+.+ .
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei-daas~~gvd~i-r 105 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI-DAASRTGVEET-K 105 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe-ecccccCHHHH-H
Confidence 44555543 347899999999999999999876421110 000000000 0001111111 11000000111 1
Q ss_pred HHHHHHhc-CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcce
Q psy12735 116 NIFRAVNK-PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAG 194 (233)
Q Consensus 116 ~~~~~~~~-~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~ 194 (233)
.+...+.. .. ..+.+++++||. +.+.....+.++..... .+.++.+|+.|.|....-|...|||-
T Consensus 106 ~ii~~~~~~p~---~g~~kViIIDEa-~~ls~~a~naLLK~LEe----------pp~~v~fIL~Ttd~~kil~tI~SRc~ 171 (546)
T PRK14957 106 EILDNIQYMPS---QGRYKVYLIDEV-HMLSKQSFNALLKTLEE----------PPEYVKFILATTDYHKIPVTILSRCI 171 (546)
T ss_pred HHHHHHHhhhh---cCCcEEEEEech-hhccHHHHHHHHHHHhc----------CCCCceEEEEECChhhhhhhHHHhee
Confidence 12122211 11 136789999995 33444455555433211 13457889999999999888899999
Q ss_pred EEEECCC
Q psy12735 195 MVYVDPI 201 (233)
Q Consensus 195 ~v~~~~~ 201 (233)
++.+.+-
T Consensus 172 ~~~f~~L 178 (546)
T PRK14957 172 QLHLKHI 178 (546)
T ss_pred eEEeCCC
Confidence 9999875
No 444
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.21 E-value=9.6e-05 Score=60.64 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=68.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+++.||+|+|||||.++++.... .++....-. . ... .+-+..++..+ .+..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg~--~---------i~k------~~dl~~il~~l--------~~~~ 103 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG---VNFKITSGP--A---------IEK------AGDLAAILTNL--------KEGD 103 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECC--C-----------S------CHHHHHHHHT----------TT-
T ss_pred eEEEECCCccchhHHHHHHHhccC---CCeEeccch--h---------hhh------HHHHHHHHHhc--------CCCc
Confidence 689999999999999999998543 333221100 0 000 11111221111 2567
Q ss_pred EEEEeCC--CCHHhHHhHHHHhhcccc-cccc---CceEEEcc-CcceEEEEeCCcCccChhhhhcceEEE-ECC
Q psy12735 134 YILFDGD--VDALWIENMNSVMDDNKI-LTLA---NGERIRLL-AHCQLLFEVGDLQYASPATVSRAGMVY-VDP 200 (233)
Q Consensus 134 ~lvlDep--~~~~~~~~l~~~l~~~~~-l~l~---~g~~i~~~-~~~~~i~et~dl~~~sPa~isr~~~v~-~~~ 200 (233)
+++.||- .+..-.+.+-..+++... +... +...+.++ +.++++=-|.....+|+.+.+|+|++. ++-
T Consensus 104 ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~ 178 (233)
T PF05496_consen 104 ILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF 178 (233)
T ss_dssp EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE---
T ss_pred EEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc
Confidence 9999996 566666667666765443 2222 23445544 568999999999999999999999984 653
No 445
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.7e-05 Score=71.94 Aligned_cols=153 Identities=12% Similarity=0.163 Sum_probs=79.2
Q ss_pred HHHHHhhc---ceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCcccccc-----cccccccCCCCcCchhHHH
Q psy12735 45 MYETMLTR---HSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPKAVSVI-----ELYGVLNPETRDWYDGLLS 115 (233)
Q Consensus 45 l~~~l~~~---~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~~~~~~-----~l~g~~~~~~~~~~~gi~~ 115 (233)
|...+..+ +..++.||.|+||||+++++++.+....+. ....+....+.... +++ .++.....=.+.+.+
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dvi-EIdaas~~gVd~IRe 108 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVL-EIDAASNRGIENIRE 108 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccce-eechhhcccHHHHHH
Confidence 33444443 457999999999999999999876532211 00000010000000 010 111110000111111
Q ss_pred HHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 116 NIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
+...+..... ....+++++||.- .+..+..+.++..... -+.++.+|+-|.+...+.|+..|||-.
T Consensus 109 -L~e~l~~~p~--~g~~KV~IIDEah-~Ls~~A~NALLKtLEE----------Pp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 109 -LRDNVKFAPM--GGKYKVYIIDEVH-MLTDQSFNALLKTLEE----------PPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred -HHHHHHhhhh--cCCCEEEEEechh-hcCHHHHHHHHHHhhc----------CCCceEEEeecCChhhccHHHHhhhhe
Confidence 1112211111 1357899999973 2333444554433211 123578888899999999999999999
Q ss_pred EEECCCCCcchHHHHHHHhh
Q psy12735 196 VYVDPINLGYQPYWTRWVNL 215 (233)
Q Consensus 196 v~~~~~~~~~~~~~~swl~~ 215 (233)
+++.+-.. .-+..|+.+
T Consensus 175 ~~f~~ls~---~~i~~~L~~ 191 (484)
T PRK14956 175 FIFKKVPL---SVLQDYSEK 191 (484)
T ss_pred eeecCCCH---HHHHHHHHH
Confidence 99987542 234455543
No 446
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.21 E-value=8e-06 Score=71.67 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=65.2
Q ss_pred HHHHhhcc--eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhc
Q psy12735 46 YETMLTRH--STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 46 ~~~l~~~~--~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~ 123 (233)
..+++.++ +.++-||+|+||||+.++|++... ..+ ..++.-....+++- .++++.-+..
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f--~~~sAv~~gvkdlr------------~i~e~a~~~~-- 100 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN---AAF--EALSAVTSGVKDLR------------EIIEEARKNR-- 100 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC---Cce--EEeccccccHHHHH------------HHHHHHHHHH--
Confidence 45566554 579999999999999999999542 222 22221111111111 1222221111
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-ccChhhhhcceEEEECCC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-YASPATVSRAGMVYVDPI 201 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-~~sPa~isr~~~v~~~~~ 201 (233)
.. ...-++++||. ..++.--.+.-.-.+++|.++.+. ..|.|++ .+.||.+|||.+..+.+-
T Consensus 101 ~~----gr~tiLflDEI------HRfnK~QQD~lLp~vE~G~iilIG------ATTENPsF~ln~ALlSR~~vf~lk~L 163 (436)
T COG2256 101 LL----GRRTILFLDEI------HRFNKAQQDALLPHVENGTIILIG------ATTENPSFELNPALLSRARVFELKPL 163 (436)
T ss_pred hc----CCceEEEEehh------hhcChhhhhhhhhhhcCCeEEEEe------ccCCCCCeeecHHHhhhhheeeeecC
Confidence 11 24567888875 122221112111234556544432 1255666 568999999999999873
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.20 E-value=5.9e-06 Score=65.64 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 55 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+.|.||+|+|||++..-++......|.++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999988655433324455555543
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.20 E-value=2.3e-06 Score=82.47 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=53.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCcccc-cccccccc------cCCCCcCchhHHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVS-VIELYGVL------NPETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~-~~~l~g~~------~~~~~~~~~gi~~~~~~~~~ 122 (233)
++.++|+|||++||||++|.+.-. +...|..+.... ...+. +..++..+ .+....|+.++.+.. .+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~--~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~--~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANE--PSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIV--RIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCC--CccccccceEEEecCCccchhhchhHHHHHHHHHH--HHH
Confidence 456899999999999999998643 222232221110 00011 01122111 122345666776665 444
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
+.. ..+.++++|||..+.|+.....+
T Consensus 403 ~~~----~~~sLvLlDE~~~GtDp~eg~al 428 (782)
T PRK00409 403 EKA----DKNSLVLFDELGAGTDPDEGAAL 428 (782)
T ss_pred HhC----CcCcEEEecCCCCCCCHHHHHHH
Confidence 332 37889999999998887654443
No 449
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=4.8e-05 Score=66.07 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCC-CCCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLD-PGSKE 131 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~-~~~~~ 131 (233)
..+.+.||+|+||||+++++++.+...+....+..++.. + ...-.......+.+++... .....
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s-----d----------~~~~~~vr~~i~~~~~~~~~~~~~~ 99 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS-----D----------DRGIDVVRNKIKMFAQKKVTLPPGR 99 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc-----c----------cccHHHHHHHHHHHHhccccCCCCC
Confidence 348899999999999999999875322111111111110 0 0011122222223322110 00125
Q ss_pred ceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 132 RKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 132 ~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
.+++++||.- .+.....+.++.... . .+...++++.+.+.+.+.|+..|||.++.+.+-
T Consensus 100 ~kviiiDE~d-~lt~~aq~aL~~~lE---~-------~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 100 HKIVILDEAD-SMTSGAQQALRRTME---I-------YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred eEEEEEechh-hcCHHHHHHHHHHHh---c-------ccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 7899999862 222222333322111 0 122367888777888888999999999988764
No 450
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.19 E-value=3.1e-06 Score=70.08 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=30.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
.....++|.|||||||||+++.|++.+.+.++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v 66 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAI 66 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceE
Confidence 345579999999999999999999999888877544
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=1.1e-05 Score=59.76 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
+..++|+||+||||||+++.++..+...+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 56799999999999999999998776544
No 452
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.0001 Score=63.79 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=79.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcC-chhHHHHHHHHHhcCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDW-YDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~-~~gi~~~~~~~~~~~~~~~~~ 130 (233)
.+...+.||.|+||+|+++.+++.+...... +..| ++..+...+.... .+.+.+ +...+.... ...
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~----~~h~------D~~~~~~~~~~~i~v~~ir~-~~~~~~~~p--~~~ 92 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQ----REYV------DIIEFKPINKKSIGVDDIRN-IIEEVNKKP--YEG 92 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCC----CCCC------CeEEeccccCCCCCHHHHHH-HHHHHhcCc--ccC
Confidence 3556899999999999999999865311100 0000 1110000011111 122222 222222111 124
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHH
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWT 210 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~ 210 (233)
+.+++++|++ +.+..+..+.++..... .+.++.+|+.+++.+.+-|...|||-++.+.+-. ..-+.
T Consensus 93 ~~kv~iI~~a-d~m~~~a~naLLK~LEe----------pp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~---~~~~~ 158 (313)
T PRK05564 93 DKKVIIIYNS-EKMTEQAQNAFLKTIEE----------PPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS---KEEIE 158 (313)
T ss_pred CceEEEEech-hhcCHHHHHHHHHHhcC----------CCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC---HHHHH
Confidence 6789999984 44555566666654221 1345788888899999999999999999998632 23457
Q ss_pred HHHhhc
Q psy12735 211 RWVNLN 216 (233)
Q Consensus 211 swl~~~ 216 (233)
.|+.+.
T Consensus 159 ~~l~~~ 164 (313)
T PRK05564 159 KFISYK 164 (313)
T ss_pred HHHHHH
Confidence 788643
No 453
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=75.82 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=70.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCcccccc-----cccccccCCCCcCchhHHHHHHHHHhc-C
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPKAVSVI-----ELYGVLNPETRDWYDGLLSNIFRAVNK-P 124 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~~~~~~-----~l~g~~~~~~~~~~~gi~~~~~~~~~~-~ 124 (233)
.+..++.||.|+||||+++++++.+....+. ....+....+.... +++- ++.....-.+-++ .+...+.. .
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE-idAas~~kVDdIR-eLie~v~~~P 115 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE-VDAASRTKVDDTR-ELLDNVQYRP 115 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE-eccccccCHHHHH-HHHHHHHhhh
Confidence 3456899999999999999999876432110 00001110011101 1110 1111000011122 12122211 1
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
. ....+++++||.- .+..+.++.++..... -+.+++||+-+.+...+.|.++|||..+.+.+-
T Consensus 116 ~---~gk~KViIIDEAh-~LT~eAqNALLKtLEE----------PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpL 178 (944)
T PRK14949 116 S---RGRFKVYLIDEVH-MLSRSSFNALLKTLEE----------PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSL 178 (944)
T ss_pred h---cCCcEEEEEechH-hcCHHHHHHHHHHHhc----------cCCCeEEEEECCCchhchHHHHHhheEEeCCCC
Confidence 1 1367899999862 2223344444332111 133578999899999999999999999999975
No 454
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=1.8e-05 Score=67.33 Aligned_cols=81 Identities=21% Similarity=0.072 Sum_probs=50.8
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChh
Q psy12735 109 WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPA 188 (233)
Q Consensus 109 ~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa 188 (233)
+++|..+++.-..+..... ...|+++++|||++++|+.....+++....+. . ...+++.+|++..+ .
T Consensus 171 lS~G~~~r~~la~~~~~~~-~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~--~--------~~tii~isH~~~~~--~ 237 (276)
T cd03241 171 ASGGELSRLMLALKAILAR-KDAVPTLIFDEIDTGISGEVAQAVGKKLKELS--R--------SHQVLCITHLPQVA--A 237 (276)
T ss_pred cChhHHHHHHHHHHHHHhc-CCCCCEEEEECCccCCCHHHHHHHHHHHHHHh--C--------CCEEEEEechHHHH--H
Confidence 5778887773222111110 03899999999999999999888776544332 1 25788888988743 4
Q ss_pred hhhcceEEEECCCC
Q psy12735 189 TVSRAGMVYVDPIN 202 (233)
Q Consensus 189 ~isr~~~v~~~~~~ 202 (233)
...|+.++--+...
T Consensus 238 ~~d~~~~l~~~~~~ 251 (276)
T cd03241 238 MADNHFLVEKEVEG 251 (276)
T ss_pred hcCcEEEEEEecCC
Confidence 44555555544443
No 455
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=2.3e-05 Score=62.66 Aligned_cols=145 Identities=15% Similarity=0.236 Sum_probs=79.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeCCccc-----ccccccccccCCCCcCchhHHHHHHHHHhcC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLNPKAV-----SVIELYGVLNPETRDWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~~~~~-----~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~ 124 (233)
+...+.||+|+||||+.+.+++.+... ++.. .+....+. ...++ .++........-.....+...+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~--c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEP--CGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHHHHHHHHHccC
Confidence 558899999999999999998865321 1100 00000000 00011 0111111111111222222333222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLG 204 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~ 204 (233)
.. ....+++++|+. +.+..+..+.++..... .+++..+++.+.+...+.|+..+||.++.+.+-.
T Consensus 92 ~~--~~~~kviiide~-~~l~~~~~~~Ll~~le~----------~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~-- 156 (188)
T TIGR00678 92 PQ--ESGRRVVIIEDA-ERMNEAAANALLKTLEE----------PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS-- 156 (188)
T ss_pred cc--cCCeEEEEEech-hhhCHHHHHHHHHHhcC----------CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC--
Confidence 11 246789999985 44444445555543211 1235678888888899999999999999998743
Q ss_pred chHHHHHHHhhc
Q psy12735 205 YQPYWTRWVNLN 216 (233)
Q Consensus 205 ~~~~~~swl~~~ 216 (233)
..-+.+|+...
T Consensus 157 -~~~~~~~l~~~ 167 (188)
T TIGR00678 157 -EEALLQWLIRQ 167 (188)
T ss_pred -HHHHHHHHHHc
Confidence 23457788765
No 456
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2e-05 Score=72.42 Aligned_cols=133 Identities=16% Similarity=0.241 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCC-----eEEeeeCCccccc-----ccccccccCCCCcCchhHHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYP-----ARTYTLNPKAVSV-----IELYGVLNPETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-----i~~~~~~~~~~~~-----~~l~g~~~~~~~~~~~gi~~~~~~~~~ 122 (233)
+...+.||.|+||||+.+++++.+...... ....+....+... .+++ .++.....-.+.+.+.+ ....
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~-eidaas~~~vd~Ir~ii-e~a~ 121 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII-EIDAASKTSVDDIRRII-ESAE 121 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE-EeeccCCCCHHHHHHHH-HHHH
Confidence 478999999999999999999877532211 1100111111000 0111 11111111122232222 2111
Q ss_pred -cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 123 -KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 123 -~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
... ..+.+++++||+ +.+.....+.++.... ..+.++.+|+-+.+.+.+.++..|||..+.+.+-
T Consensus 122 ~~P~---~~~~KVvIIDEa-~~Ls~~a~naLLk~LE----------epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~l 187 (507)
T PRK06645 122 YKPL---QGKHKIFIIDEV-HMLSKGAFNALLKTLE----------EPPPHIIFIFATTEVQKIPATIISRCQRYDLRRL 187 (507)
T ss_pred hccc---cCCcEEEEEECh-hhcCHHHHHHHHHHHh----------hcCCCEEEEEEeCChHHhhHHHHhcceEEEccCC
Confidence 111 236789999996 2333334444443211 1234578888899999999988999999998763
No 457
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=98.17 E-value=1.1e-05 Score=69.58 Aligned_cols=34 Identities=35% Similarity=0.605 Sum_probs=29.0
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
|...++.+..++|+|++||||||+++.|.+.+..
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4456677889999999999999999999988753
No 458
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.7e-05 Score=72.10 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=72.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCcc--cccccccccc--cCCCCcCchhHHHHHHHHHh-cCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPKA--VSVIELYGVL--NPETRDWYDGLLSNIFRAVN-KPL 125 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~~--~~~~~l~g~~--~~~~~~~~~gi~~~~~~~~~-~~~ 125 (233)
.+..++.||.|+||||+.+++++.+....+. ....+....+ +.......++ +.....-.+-+++ +..... ...
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIRe-li~~~~y~P~ 115 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRE-LLDNVPYAPT 115 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhhhh
Confidence 4567999999999999999999876432110 0000000000 0000111111 1111111111222 111111 111
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
..+.+++++||.- .+.....+.++..... .+.++.+|+.+++.....+..+|||..+.+.+-.
T Consensus 116 ---~gk~KV~IIDEVh-~LS~~A~NALLKtLEE----------PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 116 ---QGRFKVYLIDEVH-MLSTHSFNALLKTLEE----------PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred ---cCCcEEEEEechH-hcCHHHHHHHHHHHhc----------CCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 1367899999963 3333444444432111 1235789999999998888889999999998743
No 459
>CHL00181 cbbX CbbX; Provisional
Probab=98.14 E-value=6.7e-05 Score=64.29 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=34.2
Q ss_pred HCCCeehHHHHHHHHHHH--HHHh---------hcceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 29 QDNYEMVPVQVDKVVQMY--ETML---------TRHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 29 ~~~l~~~~~~~~k~~ql~--~~l~---------~~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
-.|+...+..+..+..+. ..+. .+..+++.||+|+||||+.+++++.+...|
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 356666666555443321 1111 244589999999999999999998765433
No 460
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.14 E-value=1.8e-06 Score=70.49 Aligned_cols=29 Identities=3% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCceEEEEeCCC-----CHHhHHhHHHHhhcccc
Q psy12735 130 KERKYILFDGDV-----DALWIENMNSVMDDNKI 158 (233)
Q Consensus 130 ~~~~~lvlDep~-----~~~~~~~l~~~l~~~~~ 158 (233)
.+|+++++|||+ .++|+.....+.+..+.
T Consensus 169 ~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 169 NDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred hcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 489999999999 99999988777665443
No 461
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.14 E-value=3.2e-05 Score=65.46 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhh-cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccccccc-cc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLT-RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGV-LN 103 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~-~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~-~~ 103 (233)
.+.++++.. ...+ .|.+.+.. +..++|.||+||||||+++.+...+...+..+.. --++........... +.
T Consensus 58 ~l~~lg~~~--~~~~---~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iit-iEdp~E~~~~~~~q~~v~ 131 (264)
T cd01129 58 DLEKLGLKP--ENLE---IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIIT-VEDPVEYQIPGINQVQVN 131 (264)
T ss_pred CHHHcCCCH--HHHH---HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEE-ECCCceecCCCceEEEeC
Confidence 355666543 3332 23344443 4468999999999999999887665433322221 112222211111100 11
Q ss_pred CC-CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh
Q psy12735 104 PE-TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN 148 (233)
Q Consensus 104 ~~-~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~ 148 (233)
.. ...| ..+++... +++|++++++|..+......
T Consensus 132 ~~~~~~~-----~~~l~~~l------R~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 EKAGLTF-----ARGLRAIL------RQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred CcCCcCH-----HHHHHHHh------ccCCCEEEeccCCCHHHHHH
Confidence 11 1122 22223222 26899999999998875543
No 462
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.14 E-value=1.7e-05 Score=74.79 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
...++|+||+|+||||+++++.+....
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 456999999999999999999887654
No 463
>KOG1808|consensus
Probab=98.13 E-value=7e-06 Score=83.67 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=114.3
Q ss_pred CCeehHHHHHHHHHHHHHHhhc-ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccc-cccCC--C
Q psy12735 31 NYEMVPVQVDKVVQMYETMLTR-HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG-VLNPE--T 106 (233)
Q Consensus 31 ~l~~~~~~~~k~~ql~~~l~~~-~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g-~~~~~--~ 106 (233)
.|.+++...+....+..+...| -.++|.||.|||||++++-+++... ..+.- -.+....+.++++| ++... .
T Consensus 418 ~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g---~~~vr-innhehtd~qeyig~y~~~~~g~ 493 (1856)
T KOG1808|consen 418 HYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATG---KNIVR-INNHEHTDLQEYIGTYVADDNGD 493 (1856)
T ss_pred eeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhc---cCcee-hhccccchHHHHHHhhhcCCCCC
Confidence 3667776666666666777776 5799999999999999999998643 22211 12223356677888 44332 3
Q ss_pred CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCC-C-CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD-V-DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ- 183 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep-~-~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~- 183 (233)
-.|..|.+-.++| +..|++|||- . .....+.++.++++++.+.++.+.+.-.+|....+|-|-+..
T Consensus 494 l~freg~LV~Alr-----------~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~ 562 (1856)
T KOG1808|consen 494 LVFREGVLVQALR-----------NGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG 562 (1856)
T ss_pred eeeehhHHHHHHH-----------hCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc
Confidence 5688888777655 5789999993 3 445678899999999999999999999999888888776665
Q ss_pred ------ccChhhhhcceEEEECC
Q psy12735 184 ------YASPATVSRAGMVYVDP 200 (233)
Q Consensus 184 ------~~sPa~isr~~~v~~~~ 200 (233)
..+-|+.+|...+++..
T Consensus 563 ~y~grk~lsRa~~~rf~e~~f~~ 585 (1856)
T KOG1808|consen 563 TYGGRKILSRALRNRFIELHFDD 585 (1856)
T ss_pred ccchhhhhhhcccccchhhhhhh
Confidence 55788888888888774
No 464
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=98.12 E-value=1.5e-05 Score=69.11 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.1
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
|..++..+..++|.|++||||||+++.|.+..
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44677778889999999999999999999876
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=98.12 E-value=1.8e-05 Score=68.64 Aligned_cols=32 Identities=22% Similarity=0.574 Sum_probs=27.8
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
|...+..+..++|+|++||||||+++.|.+.+
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34567788999999999999999999999864
No 466
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=0.00015 Score=62.44 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=65.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.|.||+|+||||+++.+++.....+....+..++.. +. . ........+..++....-.....+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~-----------~~--~--~~~~~~~~i~~~~~~~~~~~~~~~ 104 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS-----------DE--R--GIDVIRNKIKEFARTAPVGGAPFK 104 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc-----------cc--c--chHHHHHHHHHHHhcCCCCCCCce
Confidence 48999999999999999998865332211111111110 00 0 011122222233322110113578
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
++++||. +.+..+....++..... .+.+..+|+.+.+.....++..+||.++.+.+-.
T Consensus 105 vviiDe~-~~l~~~~~~~L~~~le~----------~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 105 IIFLDEA-DNLTSDAQQALRRTMEM----------YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred EEEEeCc-ccCCHHHHHHHHHHHhc----------CCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 9999985 22222222222221111 1123567777777777778888999999888643
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.12 E-value=1.6e-05 Score=69.71 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=31.1
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
..++.+..++|+||+||||||+++.|.+...+....+.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivt 194 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLIT 194 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEE
Confidence 45677889999999999999999999998866544333
No 468
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2e-05 Score=71.94 Aligned_cols=134 Identities=13% Similarity=0.194 Sum_probs=73.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCccc-----ccccccccccCCCCcCchhHHHHHHHHHh-cC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKAV-----SVIELYGVLNPETRDWYDGLLSNIFRAVN-KP 124 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~~-----~~~~l~g~~~~~~~~~~~gi~~~~~~~~~-~~ 124 (233)
.+...+.||+|+||||+.+++++.+.-..++. .-.+....+. ...+++- ++.....=.+.+.+-+ .... ..
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e-idaas~~~vddIR~Ii-e~~~~~P 112 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE-IDAASNTSVDDIKVIL-ENSCYLP 112 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE-EecccCCCHHHHHHHH-HHHHhcc
Confidence 35689999999999999999998664322221 0000000000 0001110 1111111112232222 2111 11
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
. ..+.+++++||+ +.+..+..+.++..... .++++.+|+.+.++..+.+...|||-.+.+.+-
T Consensus 113 ~---~~~~KVvIIDEa-h~Ls~~A~NaLLK~LEe----------Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l 175 (491)
T PRK14964 113 I---SSKFKVYIIDEV-HMLSNSAFNALLKTLEE----------PAPHVKFILATTEVKKIPVTIISRCQRFDLQKI 175 (491)
T ss_pred c---cCCceEEEEeCh-HhCCHHHHHHHHHHHhC----------CCCCeEEEEEeCChHHHHHHHHHhheeeecccc
Confidence 1 247899999996 33333445555433211 134578999999999999999999999999864
No 469
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.11 E-value=2.2e-06 Score=87.82 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=51.2
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEe
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEV 179 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et 179 (233)
|.....++|-.+|+ +++..+......+.+++||||+.++.+.-...+++....|.-.+.+.+.+.||..++-..
T Consensus 1695 q~~~tLSGGE~qRi--kLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~a 1768 (1809)
T PRK00635 1695 QNLSSLSLSEKIAI--KIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768 (1809)
T ss_pred CcCCccCchHHHHH--HHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhC
Confidence 33445677777777 555444311234689999999999988887777777777776677777777776655543
No 470
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.11 E-value=5.8e-05 Score=73.71 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=77.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC--cccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP--KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~--~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+.++||+|+|||++.+.|+..+...+.......+.. ......+++|.-+.....-.+|.+...++. ..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~---------~p 670 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR---------RP 670 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh---------CC
Confidence 5789999999999999999987654444433222211 112233445532211111113444433331 23
Q ss_pred ceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc--------------------------C
Q psy12735 132 RKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL--------------------------Q 183 (233)
Q Consensus 132 ~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl--------------------------~ 183 (233)
..+++|||.- +..-...+-.++++. .+.-..|..+...+ .-+|+ |+++ .
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g-~l~d~~gr~vd~rn-~iiI~-TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDG-RLTDGQGRTVDFRN-TVVIM-TSNLGSDLIQERFGELDYAHMKELVLGVVSH 747 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhC-ceecCCceEEeecc-cEEEE-eCCcchHHHHHhccccchHHHHHHHHHHHcc
Confidence 4689999873 333333344445443 33334455555442 22333 5554 1
Q ss_pred ccChhhhhcc-eEEEECCCCC-cchHHHHHHHh
Q psy12735 184 YASPATVSRA-GMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 184 ~~sPa~isr~-~~v~~~~~~~-~~~~~~~swl~ 214 (233)
...|.+++|+ .++.+.+-.- ....+++..++
T Consensus 748 ~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 748 NFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred cccHHHHHhCCeeEecCCCCHHHHHHHHHHHHH
Confidence 3568999999 6777766322 23344444443
No 471
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.10 E-value=6.5e-05 Score=64.93 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.+.||+|+||||+++.++.... ..+ ..+++.. + . .+.+...+ ..++.... ....++
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~---~~~--~~i~~~~-------~-------~-~~~i~~~l-~~~~~~~~-~~~~~~ 102 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVG---AEV--LFVNGSD-------C-------R-IDFVRNRL-TRFASTVS-LTGGGK 102 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC---ccc--eEeccCc-------c-------c-HHHHHHHH-HHHHHhhc-ccCCCe
Confidence 455589999999999999987542 111 1122111 0 0 11222222 11111110 013578
Q ss_pred EEEEeCCCCH---HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 134 YILFDGDVDA---LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 134 ~lvlDep~~~---~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
++++||.-.- .....+..+++. .+.+..+++.+++.+.+.|+..+||..+.+..
T Consensus 103 vliiDe~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 103 VIIIDEFDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred EEEEECcccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 9999996321 112223333322 12347888888888899999999999998843
No 472
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=6.1e-05 Score=72.95 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=77.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCCccc-------ccccccccccCCCCcCchhHHHHHHHHHh-
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNPKAV-------SVIELYGVLNPETRDWYDGLLSNIFRAVN- 122 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~~~~-------~~~~l~g~~~~~~~~~~~gi~~~~~~~~~- 122 (233)
.|..++.||.|+||||+.++|++.+.-..+. ..-.+....+. ...+++ .++.....-.+.+.+ +...+.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~-eidaas~~~Vd~iR~-l~~~~~~ 114 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT-EIDAASHGGVDDARE-LRERAFF 114 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE-EecccccCCHHHHHH-HHHHHHh
Confidence 4567899999999999999999877422211 00000000000 000111 011111111122222 211111
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
... ....+++|+||.- .+-.+..+.+++.... .+.++.|||.+.+...+-+.+.|||.++.+..-.
T Consensus 115 ~p~---~~~~KV~IIDEad-~lt~~a~NaLLK~LEE----------pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~ 180 (824)
T PRK07764 115 APA---ESRYKIFIIDEAH-MVTPQGFNALLKIVEE----------PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVP 180 (824)
T ss_pred chh---cCCceEEEEechh-hcCHHHHHHHHHHHhC----------CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCC
Confidence 111 2467899999862 2223445555443221 2345788998989988989999999999998642
Q ss_pred CcchHHHHHHHhh
Q psy12735 203 LGYQPYWTRWVNL 215 (233)
Q Consensus 203 ~~~~~~~~swl~~ 215 (233)
..-+..||.+
T Consensus 181 ---~~~l~~~L~~ 190 (824)
T PRK07764 181 ---PEVMRGYLER 190 (824)
T ss_pred ---HHHHHHHHHH
Confidence 2344455553
No 473
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00012 Score=63.95 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=83.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCC-eEEeeeCC-----cccccccccccccCCC--CcCchhHHHHHHHHHhc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYP-ARTYTLNP-----KAVSVIELYGVLNPET--RDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-i~~~~~~~-----~~~~~~~l~g~~~~~~--~~~~~gi~~~~~~~~~~ 123 (233)
.|...+.||.|+||+|+...+++.+.-.+.. ...-+..+ .+-+..+++-..+... ..-.|.+++ +...+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~~~ 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFVVQ 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHHhh
Confidence 4567899999999999999999876421100 00000000 0001111111111100 011123333 2222222
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
... ....+++++| +.+.+..+..+.++..... -+.+..+|+.+++...+-|...|||-.+.+.+-.
T Consensus 101 ~~~--~~~~kv~iI~-~a~~m~~~aaNaLLK~LEE----------Pp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~- 166 (328)
T PRK05707 101 TAQ--LGGRKVVLIE-PAEAMNRNAANALLKSLEE----------PSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS- 166 (328)
T ss_pred ccc--cCCCeEEEEC-ChhhCCHHHHHHHHHHHhC----------CCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC-
Confidence 111 2367788885 5566666777777654221 1235789999999999999999999999998643
Q ss_pred cchHHHHHHHhhc
Q psy12735 204 GYQPYWTRWVNLN 216 (233)
Q Consensus 204 ~~~~~~~swl~~~ 216 (233)
..-+.+||...
T Consensus 167 --~~~~~~~L~~~ 177 (328)
T PRK05707 167 --NEESLQWLQQA 177 (328)
T ss_pred --HHHHHHHHHHh
Confidence 34677888753
No 474
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.08 E-value=3.7e-05 Score=70.64 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=78.4
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----ccccc---cccCCC-----CcCchhHH
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYG---VLNPET-----RDWYDGLL 114 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g---~~~~~~-----~~~~~gi~ 114 (233)
.....++.++++||+|+||||+++.+.+.+.+..+...+..-...+..- ..... +..+.. ..+-+|..
T Consensus 206 ~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~ 285 (499)
T TIGR00368 206 IAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPI 285 (499)
T ss_pred hhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccc
Confidence 4456788999999999999999999999988776665443222111100 00000 000000 00001100
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCC-----------
Q psy12735 115 SNIFRAVNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGD----------- 181 (233)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~d----------- 181 (233)
.+- -.+. ..+..++++||.. +..-.+.+.+.+++........|..+..+.++++|..+..
T Consensus 286 ~~p-G~i~------lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~ 358 (499)
T TIGR00368 286 PLP-GEIS------LAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNT 358 (499)
T ss_pred cch-hhhh------ccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcc
Confidence 000 0011 1255789999973 3444455666665533211123334556677888876643
Q ss_pred ------------cCccChhhhhcceEEE
Q psy12735 182 ------------LQYASPATVSRAGMVY 197 (233)
Q Consensus 182 ------------l~~~sPa~isr~~~v~ 197 (233)
+..+|+.++.|+.+..
T Consensus 359 ~c~c~~~~~~~y~~~is~pllDR~dl~~ 386 (499)
T TIGR00368 359 HCRCSPQQISRYWNKLSGPFLDRIDLSV 386 (499)
T ss_pred cccCCHHHHHHHhhhccHhHHhhCCEEE
Confidence 2258888999999875
No 475
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.2e-05 Score=66.32 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=88.9
Q ss_pred CCCCChhH---HHHHHHHHHHHCCCeehHHHHHHHHHHHHH--HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 11 CSRVSYPE---FTAALETVLKQDNYEMVPVQVDKVVQMYET--MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 11 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~--l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
-|.++|.+ +.+.+++.-+-+.+.+....+ ++. +.+-++|.+.||+|+|||-|.|+++...+. ++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PEl------F~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tF 213 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPEL------FEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TF 213 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHH------HHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eE
Confidence 46777776 477777766655666443332 443 467889999999999999999999874322 22
Q ss_pred eeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC----------CHHhHHhHHHHhhc
Q psy12735 86 YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV----------DALWIENMNSVMDD 155 (233)
Q Consensus 86 ~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~----------~~~~~~~l~~~l~~ 155 (233)
..+.- .++..-+ =|--.+++|.+....- ...|.++++||-- ++.|-|-+.++++.
T Consensus 214 Irvvg-----SElVqKY--------iGEGaRlVRelF~lAr--ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 214 IRVVG-----SELVQKY--------IGEGARLVRELFELAR--EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred EEecc-----HHHHHHH--------hccchHHHHHHHHHHh--hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 11111 1121101 0222344443322111 2579999999842 24566777777765
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhh
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATV 190 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~i 190 (233)
...+.- ..-..|+++|+-|.-++-+-||++
T Consensus 279 L~qlDG-----FD~~~nvKVI~ATNR~D~LDPALL 308 (406)
T COG1222 279 LNQLDG-----FDPRGNVKVIMATNRPDILDPALL 308 (406)
T ss_pred HHhccC-----CCCCCCeEEEEecCCccccChhhc
Confidence 544321 112346899999988888888754
No 476
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.08 E-value=1.1e-05 Score=68.25 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=52.7
Q ss_pred HHHHHHHH-HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccc--ccccc-CCCCcCchhHHH
Q psy12735 40 DKVVQMYE-TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIEL--YGVLN-PETRDWYDGLLS 115 (233)
Q Consensus 40 ~k~~ql~~-~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l--~g~~~-~~~~~~~~gi~~ 115 (233)
..+.++.. .++.+..++|.|++||||||+++.+.....+....+... -++..+..... ..... .....+.+.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i-Ed~~E~~l~~~~~~~~~~~~~~~~~~~~--- 189 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTI-EDPPELRLPGPNQIQIQTRRDEISYEDL--- 189 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE-ESSS-S--SCSSEEEEEEETTTBSHHHH---
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEe-ccccceeecccceEEEEeecCcccHHHH---
Confidence 44555553 446678899999999999999999998877662333221 12222211111 11111 111222222
Q ss_pred HHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 116 NIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
++..- +++|++++++|-.+....+.+
T Consensus 190 --l~~~L------R~~pD~iiigEiR~~e~~~~~ 215 (270)
T PF00437_consen 190 --LKSAL------RQDPDVIIIGEIRDPEAAEAI 215 (270)
T ss_dssp --HHHHT------TS--SEEEESCE-SCHHHHHH
T ss_pred --HHHHh------cCCCCcccccccCCHhHHHHH
Confidence 22222 268999999999887655553
No 477
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.08 E-value=4.2e-05 Score=66.90 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
...+.|.|++|+||||+++++++.+..
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~ 51 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPE 51 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcc
Confidence 456999999999999999999998864
No 478
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=6.5e-05 Score=70.78 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHhhcc---eEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCcc--cc---cccccccccCCCCcCchhHHH
Q psy12735 45 MYETMLTRH---STMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKA--VS---VIELYGVLNPETRDWYDGLLS 115 (233)
Q Consensus 45 l~~~l~~~~---~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~--~~---~~~l~g~~~~~~~~~~~gi~~ 115 (233)
|...+..++ ..++.||.|+||||+.+++++.+.-..+.. .-.+....+ +. ..+++- ++.....-.+-+.+
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie-idaas~~~VddiR~ 106 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE-IDAASRTKVEDTRE 106 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee-ecccccCCHHHHHH
Confidence 344454443 368999999999999999998765321100 000000000 00 001110 11110010111221
Q ss_pred HHHHHHhc-CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcce
Q psy12735 116 NIFRAVNK-PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAG 194 (233)
Q Consensus 116 ~~~~~~~~-~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~ 194 (233)
+...+.. .. ....+++++||.- .+..+..+.++..... -+.++.||+.|++...+.|...|||-
T Consensus 107 -li~~~~~~p~---~g~~KV~IIDEah-~Ls~~a~NALLKtLEE----------Pp~~v~FIL~Tt~~~kLl~TI~SRC~ 171 (647)
T PRK07994 107 -LLDNVQYAPA---RGRFKVYLIDEVH-MLSRHSFNALLKTLEE----------PPEHVKFLLATTDPQKLPVTILSRCL 171 (647)
T ss_pred -HHHHHHhhhh---cCCCEEEEEechH-hCCHHHHHHHHHHHHc----------CCCCeEEEEecCCccccchHHHhhhe
Confidence 2222111 11 1367899999862 2233444554432111 13457899999999999999999999
Q ss_pred EEEECCCC
Q psy12735 195 MVYVDPIN 202 (233)
Q Consensus 195 ~v~~~~~~ 202 (233)
.+++.+-.
T Consensus 172 ~~~f~~Ls 179 (647)
T PRK07994 172 QFHLKALD 179 (647)
T ss_pred EeeCCCCC
Confidence 99999743
No 479
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.07 E-value=2.2e-06 Score=77.77 Aligned_cols=119 Identities=10% Similarity=0.048 Sum_probs=72.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc----cccccccCC--------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI----ELYGVLNPE-------------------- 105 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~----~l~g~~~~~-------------------- 105 (233)
..|+.++|.|--|||+|-++++|.|.....+|.+.+.+......+.. .-+++++.+
T Consensus 283 r~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~ 362 (500)
T COG1129 283 RAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLAS 362 (500)
T ss_pred eCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHh
Confidence 44445999999999999999999998877778877655432111100 112222111
Q ss_pred ------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhH
Q psy12735 106 ------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENM 149 (233)
Q Consensus 106 ------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l 149 (233)
...+|+|-.|++ -+++-. ..+|++++|||||-+.|+-..
T Consensus 363 l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV--vlarwL---~~~p~vLilDEPTRGIDVGAK 437 (500)
T COG1129 363 LRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV--VLARWL---ATDPKVLILDEPTRGIDVGAK 437 (500)
T ss_pred hhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH--HHHHHH---hcCCCEEEECCCCcCcccchH
Confidence 011122222222 111111 138999999999999999999
Q ss_pred HHHhhccccccccCceEEEccCcc
Q psy12735 150 NSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 150 ~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
..++...+.+.-.+..++.++.++
T Consensus 438 ~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 438 AEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCh
Confidence 888887777766655444444443
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.07 E-value=2.9e-06 Score=67.95 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
|..++|+|||||||||+++.|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46799999999999999999988653
No 481
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.9e-05 Score=68.70 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=78.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--Ccc--c---ccccccccccCCCCcCchhHHHHHHHHHh-c
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKA--V---SVIELYGVLNPETRDWYDGLLSNIFRAVN-K 123 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~--~~~--~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~-~ 123 (233)
.+...+.||.|+||||+.+++++.+.-..+. ...... ..+ + +..+++. ++.....-.+.+.+ +...+. .
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pCg~C~~C~~i~~g~~~d~~e-idaas~~~v~~iR~-l~~~~~~~ 114 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGV-SANPCNDCENCREIDEGRFPDLFE-VDAASRTKVEDTRE-LLDNIPYA 114 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCC-CcccCCCCHHHHHHhcCCCceEEE-EcccccCCHHHHHH-HHHHHhhc
Confidence 4567899999999999999999877432211 000000 000 0 0011111 11111111122222 212111 1
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC-
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN- 202 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~- 202 (233)
.. ....+++++||.- .+..+..+.++..... .+.++.+|+.|.|.....|...|||-.+.+.+-.
T Consensus 115 p~---~~~~kV~iIDE~~-~ls~~a~naLLk~LEe----------pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~ 180 (509)
T PRK14958 115 PT---KGRFKVYLIDEVH-MLSGHSFNALLKTLEE----------PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 (509)
T ss_pred cc---cCCcEEEEEEChH-hcCHHHHHHHHHHHhc----------cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCH
Confidence 11 2367899999962 2223344444432111 1345889999999999988889999999998643
Q ss_pred CcchHHHHHHHh
Q psy12735 203 LGYQPYWTRWVN 214 (233)
Q Consensus 203 ~~~~~~~~swl~ 214 (233)
-.+...+..|+.
T Consensus 181 ~~i~~~l~~il~ 192 (509)
T PRK14958 181 LQIAAHCQHLLK 192 (509)
T ss_pred HHHHHHHHHHHH
Confidence 233444555555
No 482
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5.1e-05 Score=71.24 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCC----CeEE--eeeCCcc--cccccccccc--cCCCCcCchhHHHHHHHHH
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGY----PART--YTLNPKA--VSVIELYGVL--NPETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~----~i~~--~~~~~~~--~~~~~l~g~~--~~~~~~~~~gi~~~~~~~~ 121 (233)
.+...+.||.|+||||+.+++++.+.-.+. .+.. .+....+ +.......++ +.....=.+.+.+.+ ...
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli-~~~ 116 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLL-EQA 116 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHH-HHH
Confidence 455789999999999999999987653210 0000 0000000 0000001111 111000011222222 221
Q ss_pred h-cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 122 N-KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 122 ~-~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
. ... ....+++++||.- .+..+..+.++..... .+.++.+|+.|.|...+-|.+.|||-.+.+.+
T Consensus 117 ~~~p~---~g~~KV~IIDEvh-~Ls~~a~NaLLKtLEE----------PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~ 182 (618)
T PRK14951 117 VYKPV---QGRFKVFMIDEVH-MLTNTAFNAMLKTLEE----------PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRP 182 (618)
T ss_pred HhCcc---cCCceEEEEEChh-hCCHHHHHHHHHhccc----------CCCCeEEEEEECCchhhhHHHHHhceeeecCC
Confidence 1 111 1357899999873 2233344444432111 13457899999999999999999999999987
Q ss_pred CC
Q psy12735 201 IN 202 (233)
Q Consensus 201 ~~ 202 (233)
-.
T Consensus 183 Ls 184 (618)
T PRK14951 183 MA 184 (618)
T ss_pred CC
Confidence 43
No 483
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.1e-05 Score=68.80 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCccccc--ccccccccCCCCcCchhH--HHHHHHHHhcCCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKAVSV--IELYGVLNPETRDWYDGL--LSNIFRAVNKPLDP 127 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~~~~--~~l~g~~~~~~~~~~~gi--~~~~~~~~~~~~~~ 127 (233)
+..++.||+|+||||+++++++.+....... ........+... ......+..... -..|+ ...+.........
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa-~~~gid~iR~i~~~~~~~p~- 114 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA-SNRGIDEIRKIRDAVGYRPM- 114 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc-ccCCHHHHHHHHHHHhhChh-
Confidence 3478999999999999999998764321110 000000000000 000000000000 01121 1122111111100
Q ss_pred CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 128 GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 128 ~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
..+.+++++||. +.+..+.++.++.... -+ +.++.+++.+.+...+.|+..|||.++.+.+-
T Consensus 115 -~~~~kVvIIDE~-h~Lt~~a~~~LLk~LE---~p-------~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l 176 (472)
T PRK14962 115 -EGKYKVYIIDEV-HMLTKEAFNALLKTLE---EP-------PSHVVFVLATTNLEKVPPTIISRCQVIEFRNI 176 (472)
T ss_pred -cCCeEEEEEECh-HHhHHHHHHHHHHHHH---hC-------CCcEEEEEEeCChHhhhHHHhcCcEEEEECCc
Confidence 136789999996 3333333344433211 11 22356677777888889999999999999864
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=4.5e-06 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..+.|.|||||||||++.++.-++-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4699999999999999999876553
No 485
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=2.7e-05 Score=67.57 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=34.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
.++.++++||||+||||++..|++.+...++.+.+...++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3567899999999999999999999888888888777665
No 486
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=2.3e-05 Score=72.58 Aligned_cols=134 Identities=14% Similarity=0.208 Sum_probs=73.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCcc--c---ccccccccccCCCCcCchhHHHHHHHHHh-cC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKA--V---SVIELYGVLNPETRDWYDGLLSNIFRAVN-KP 124 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~--~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~-~~ 124 (233)
.+...+.||+|+||||+.+++++.+.-..+.. .-.+....+ + ...+++. ++.....-.+-+.+ +...+. ..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e-i~~~~~~~vd~ir~-l~~~~~~~p 115 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE-VDAASNTQVDAMRE-LLDNAQYAP 115 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE-eeccccCCHHHHHH-HHHHHhhCc
Confidence 45678999999999999999998764221110 000000000 0 0111111 11111111122222 222211 11
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
. ..+.+++++||. +.+..+..+.++..... .+.++.+|+.|.|....-|...|||-.+.+.+-
T Consensus 116 ~---~~~~kVvIIDEa-d~ls~~a~naLLK~LEe----------pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l 178 (527)
T PRK14969 116 T---RGRFKVYIIDEV-HMLSKSAFNAMLKTLEE----------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (527)
T ss_pred c---cCCceEEEEcCc-ccCCHHHHHHHHHHHhC----------CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCC
Confidence 1 236789999995 34444555555543221 134578899899999998888999999999874
No 487
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.0001 Score=63.59 Aligned_cols=134 Identities=17% Similarity=0.199 Sum_probs=71.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee---CCccc---ccccccccccCCCCcCchhHHHHHHHHHhcCCC-
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL---NPKAV---SVIELYGVLNPETRDWYDGLLSNIFRAVNKPLD- 126 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~---~~~~~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~- 126 (233)
...+.||+|+||||++..+++.+-........... ....+ ...+++-.-..+.... .+....++.+.+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 49999999999999999999866422211000000 00000 0001111111110110 122333333332111
Q ss_pred -CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECC
Q psy12735 127 -PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDP 200 (233)
Q Consensus 127 -~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~ 200 (233)
+.....+++++|+. +.+.....+.++.... .-+.+..+++.+++...+-|...|||.++.+.+
T Consensus 104 ~~~~~~~kviiidea-d~mt~~A~nallk~lE----------ep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEA-DKLTEDAANALLKTLE----------EPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcH-HHHhHHHHHHHHHHhc----------cCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 11246788888865 3444444444433211 113357888988999999998889999999986
No 488
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=6.7e-05 Score=69.26 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEeeeCCcccccccc--cccc--cCCCCcCchhHHHHHHHHHh-cCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYTLNPKAVSVIEL--YGVL--NPETRDWYDGLLSNIFRAVN-KPLD 126 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~~~~~~~~~~~l--~g~~--~~~~~~~~~gi~~~~~~~~~-~~~~ 126 (233)
+...+.||.|+||||+++.+++.+....+ .....+....+....+. ...+ +.....-.+.+.+.+ .... ...
T Consensus 37 hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IReli-e~~~~~P~- 114 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELI-EQTKYKPS- 114 (535)
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHH-HHHhhCcc-
Confidence 34589999999999999999987632111 11000000000000000 0000 110000012233322 1111 111
Q ss_pred CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcch
Q psy12735 127 PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQ 206 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~ 206 (233)
....+++++||. +.+..+..+.++..... .+.++.+|+.+.+...+.|+..|||..+.+.+-. .
T Consensus 115 --~~~~KVvIIDEa-d~Lt~~A~NALLK~LEE----------pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls---~ 178 (535)
T PRK08451 115 --MARFKIFIIDEV-HMLTKEAFNALLKTLEE----------PPSYVKFILATTDPLKLPATILSRTQHFRFKQIP---Q 178 (535)
T ss_pred --cCCeEEEEEECc-ccCCHHHHHHHHHHHhh----------cCCceEEEEEECChhhCchHHHhhceeEEcCCCC---H
Confidence 136789999996 44455555555443211 1345788998999988889999999999999754 2
Q ss_pred HHHHHHHh
Q psy12735 207 PYWTRWVN 214 (233)
Q Consensus 207 ~~~~swl~ 214 (233)
.-+..|+.
T Consensus 179 ~ei~~~L~ 186 (535)
T PRK08451 179 NSIISHLK 186 (535)
T ss_pred HHHHHHHH
Confidence 34555554
No 489
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.04 E-value=1.1e-05 Score=66.00 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=37.7
Q ss_pred cCchhHHHHHHHHH--hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 108 DWYDGLLSNIFRAV--NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 108 ~~~~gi~~~~~~~~--~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..|+|....+.-.+ |.... ....+++|||+.+++|......+.+..+.+ ..+..+|+.||+-..+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~---~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~----------~~~~Q~ii~Th~~~~~ 202 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRY---KPSPFLILDEVDAALDEQNRKRLADLLKEL----------SKQSQFIITTHNPEMF 202 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTC---S--SEEEEESTTTTS-HHHHHHHHHHHHHH----------TTTSEEEEE-S-HHHH
T ss_pred ccccccccccccccccccccc---cccccccccccccccccccccccccccccc----------cccccccccccccccc
Confidence 56778766653221 11111 245689999999999999988776654432 1236777777776655
Q ss_pred Chh
Q psy12735 186 SPA 188 (233)
Q Consensus 186 sPa 188 (233)
+-+
T Consensus 203 ~~a 205 (220)
T PF02463_consen 203 EDA 205 (220)
T ss_dssp TT-
T ss_pred ccc
Confidence 444
No 490
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.03 E-value=3e-06 Score=68.65 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=25.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
+..|+.++|+|||||||||+++.|++.+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45788899999999999999999998764
No 491
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.1e-05 Score=69.19 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=79.3
Q ss_pred HHHHHhhc---ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-EeeeCCcccc-------cccccccccCCCCcCchhH
Q psy12735 45 MYETMLTR---HSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-TYTLNPKAVS-------VIELYGVLNPETRDWYDGL 113 (233)
Q Consensus 45 l~~~l~~~---~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-~~~~~~~~~~-------~~~l~g~~~~~~~~~~~gi 113 (233)
|...+..+ |...+.||.|+||||+.+++++.+.-..+... --+....+.. ..+.+- ++.....=.+-+
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie-idaas~~gvd~i 103 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE-LDAASHGGVDDT 103 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE-eccccccCHHHH
Confidence 33444443 45689999999999999999987652221110 0000000000 001110 111100001112
Q ss_pred HHHHHHHHh-cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhc
Q psy12735 114 LSNIFRAVN-KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSR 192 (233)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr 192 (233)
.+ +...+. ... ..+.+++++||. +.+.....+.++..... .+.++.+|+-|.+...+.|...||
T Consensus 104 Re-l~~~~~~~P~---~~~~KVvIIDEa-h~Lt~~A~NALLK~LEE----------pp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 104 RE-LRDRAFYAPA---QSRYRIFIVDEA-HMVTTAGFNALLKIVEE----------PPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred HH-HHHHHHhhhh---cCCceEEEEECC-CcCCHHHHHHHHHHHhc----------CCCCeEEEEEeCChHhhHHHHHHh
Confidence 11 111111 111 136789999995 22333455555433211 234588899899999999999999
Q ss_pred ceEEEECCCCCcchHHHHHHHhh
Q psy12735 193 AGMVYVDPINLGYQPYWTRWVNL 215 (233)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~swl~~ 215 (233)
|-.+.+.+-.- .-+..||..
T Consensus 169 c~~~~F~~l~~---~~i~~~L~~ 188 (584)
T PRK14952 169 THHYPFRLLPP---RTMRALIAR 188 (584)
T ss_pred ceEEEeeCCCH---HHHHHHHHH
Confidence 99999987432 345556653
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.98 E-value=4.8e-06 Score=67.80 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
.|..++|+|||||||||+++.|++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4667999999999999999999998754
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.98 E-value=8.5e-06 Score=67.10 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=25.5
Q ss_pred EEEEcCCCCChHHHHHHHHhhhhh--cCCCeEE
Q psy12735 55 TMIVGPTGGGKSVVINALVKTSTV--LGYPART 85 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~ 85 (233)
++|.|||||||||+++.|.+.+.. .++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 799999999999999999998864 3445544
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=3.8e-05 Score=72.46 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=71.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCcc--ccccccccc--ccCCCCcCchhHHHHHHHHHh-cCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKA--VSVIELYGV--LNPETRDWYDGLLSNIFRAVN-KPL 125 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~--~~~~~l~g~--~~~~~~~~~~gi~~~~~~~~~-~~~ 125 (233)
.+.+++.||+|+||||+.+++++.+....+.. .-.+....+ +.......+ ++.....-.+.+.. ++.... ...
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRe-lle~a~~~P~ 116 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIRE-VLENAQYAPT 116 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHH-HHHHHHhhhh
Confidence 35689999999999999999998764322110 000000000 000111111 11111111122222 222111 111
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
..+.+++++||. +.+.....+.++..... .+.++.+|+.+.+...+.+..+|||-.+.+.+-
T Consensus 117 ---~gk~KVIIIDEa-d~Ls~~A~NALLKtLEE----------Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~L 178 (709)
T PRK08691 117 ---AGKYKVYIIDEV-HMLSKSAFNAMLKTLEE----------PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM 178 (709)
T ss_pred ---hCCcEEEEEECc-cccCHHHHHHHHHHHHh----------CCCCcEEEEEeCCccccchHHHHHHhhhhcCCC
Confidence 136789999996 33444444444432111 123578999999999999999999988877653
No 495
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.97 E-value=5.8e-05 Score=65.94 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL 79 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~ 79 (233)
.+++.+..++|+|++||||||+++.|.......
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 466778899999999999999999999887653
No 496
>PRK13764 ATPase; Provisional
Probab=97.96 E-value=4.8e-05 Score=71.01 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=50.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
..+..+.|+||+||||||+++.|+..+...+..+.. --+|..+..... +.|.. . .++-.......+- .
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~T-iEDp~El~~~~~---i~q~~-~-~~~~~~~~~~~lL------R 322 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKT-MESPRDLQVPPE---ITQYS-K-LEGSMEETADILL------L 322 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEE-ECCCccccCCCc---ceEEe-e-ccccHHHHHHHHH------h
Confidence 557889999999999999999999888654433312 223322222111 11100 0 0111112211111 2
Q ss_pred CCceEEEEeCCCCHHhHHh
Q psy12735 130 KERKYILFDGDVDALWIEN 148 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~ 148 (233)
+.|+++++||..+..+.+.
T Consensus 323 ~rPD~IivGEiRd~Et~~~ 341 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKI 341 (602)
T ss_pred hCCCEEEECCCCCHHHHHH
Confidence 5899999999998887664
No 497
>PRK04195 replication factor C large subunit; Provisional
Probab=97.96 E-value=0.00027 Score=64.88 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhh---cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhH
Q psy12735 37 VQVDKVVQMYETMLT---RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGL 113 (233)
Q Consensus 37 ~~~~k~~ql~~~l~~---~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi 113 (233)
..+.++.++.+.... .+.+.|.||+|+||||+++++++.+. ..+ ..++.... . ....
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~---~~~--ielnasd~-----------r----~~~~ 80 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG---WEV--IELNASDQ-----------R----TADV 80 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCE--EEEccccc-----------c----cHHH
Confidence 333444444444433 56799999999999999999988652 221 11221100 0 1112
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCC--H-HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh-hh
Q psy12735 114 LSNIFRAVNKPLDPGSKERKYILFDGDVD--A-LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP-AT 189 (233)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~lvlDep~~--~-~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP-a~ 189 (233)
...+....+....-.....+++++||.-. . .+......+++... . .+..+|+.+.+.....+ ..
T Consensus 81 i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~----~--------~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 81 IERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK----K--------AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH----c--------CCCCEEEeccCccccchhhH
Confidence 22222222211100002578999999632 1 12122333322211 1 12457777777777777 67
Q ss_pred hhcceEEEECCCC
Q psy12735 190 VSRAGMVYVDPIN 202 (233)
Q Consensus 190 isr~~~v~~~~~~ 202 (233)
.+||-.|.+.+-.
T Consensus 149 rsr~~~I~f~~~~ 161 (482)
T PRK04195 149 RNACLMIEFKRLS 161 (482)
T ss_pred hccceEEEecCCC
Confidence 7999999998643
No 498
>KOG0989|consensus
Probab=97.96 E-value=3.2e-05 Score=65.78 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=67.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC-C
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK-E 131 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~-~ 131 (233)
...+.||+|.|||+.++++++.+.. .-.+-.+-..+. +..+-.+.+......| .++. .......+... .
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr~Kik~f-----akl~-~~~~~~~~~~~~~ 129 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVREKIKNF-----AKLT-VLLKRSDGYPCPP 129 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchhhhhcCH-----HHHh-hccccccCCCCCc
Confidence 4689999999999999999997753 000101111110 0001111111111111 1110 00000111122 3
Q ss_pred ceEEEEeCCC---CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 132 RKYILFDGDV---DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 132 ~~~lvlDep~---~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
.+++||||.- +..|... ..+++.- +.+.+|++.+..++.+-+-.+|||.=..+.+-
T Consensus 130 fKiiIlDEcdsmtsdaq~aL-rr~mE~~-------------s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 130 FKIIILDECDSMTSDAQAAL-RRTMEDF-------------SRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred ceEEEEechhhhhHHHHHHH-HHHHhcc-------------ccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 4999999962 2223333 3333331 22489999999999999999999999999874
No 499
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.96 E-value=7e-05 Score=68.74 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 86 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~ 86 (233)
+.-....++.++++|||||||||+++.+.+.+.+..+...+.
T Consensus 203 l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le 244 (506)
T PRK09862 203 LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALE 244 (506)
T ss_pred hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEe
Confidence 334556789999999999999999999999998877765543
No 500
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.95 E-value=0.0017 Score=53.83 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=88.7
Q ss_pred CeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch
Q psy12735 32 YEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD 111 (233)
Q Consensus 32 l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 111 (233)
+..+|-.-.-.+.+..++..+.+.++.||+|+|||+.+|.|++.+ |..+.+....+ ..+.
T Consensus 12 lv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~-----------------~~~~ 71 (231)
T PF12774_consen 12 LVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSE-----------------QMDY 71 (231)
T ss_dssp ----HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTS-----------------SS-H
T ss_pred ceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHh---CCeEEEecccc-----------------cccH
Confidence 445554444455666788888999999999999999999999865 54555443331 2234
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHh-------HHHHhh---c-cccccccCceEEEccCcceEEEEeC
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIEN-------MNSVMD---D-NKILTLANGERIRLLAHCQLLFEVG 180 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~-------l~~~l~---~-~~~l~l~~g~~i~~~~~~~~i~et~ 180 (233)
....+++..+++ ..-|.+|||-- .++.+. +..+.+ . .....+ .|+.+.+.++..+++. .
T Consensus 72 ~~l~ril~G~~~-------~GaW~cfdefn-rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT-~ 141 (231)
T PF12774_consen 72 QSLSRILKGLAQ-------SGAWLCFDEFN-RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFIT-M 141 (231)
T ss_dssp HHHHHHHHHHHH-------HT-EEEEETCC-CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEE-E
T ss_pred HHHHHHHHHHhh-------cCchhhhhhhh-hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEe-e
Confidence 467777776664 46799999853 222222 222222 2 223333 4777888888776664 4
Q ss_pred CcC-----ccChhhhhcceEEEECCCCCcchHHHHHHHhhcccc-cHHHHHHHHhhh
Q psy12735 181 DLQ-----YASPATVSRAGMVYVDPINLGYQPYWTRWVNLNVKA-DEELRELLNGIF 231 (233)
Q Consensus 181 dl~-----~~sPa~isr~~~v~~~~~~~~~~~~~~swl~~~~~~-~~~~~~~l~~l~ 231 (233)
+.. .....+-+-+.-|.|..-++ ..+.+.+|...-+. +++..+-+..||
T Consensus 142 np~y~gr~~LP~nLk~lFRpvam~~PD~--~~I~ei~L~s~GF~~a~~La~kl~~l~ 196 (231)
T PF12774_consen 142 NPGYAGRSELPENLKALFRPVAMMVPDL--SLIAEILLLSQGFKDAKSLAKKLVSLF 196 (231)
T ss_dssp -B-CCCC--S-HHHCTTEEEEE--S--H--HHHHHHHHHCCCTSSHHHHHHHHHHHH
T ss_pred ccccCCcccCCHhHHHHhheeEEeCCCH--HHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 433 34444556677777765443 45666666543211 233444444444
Done!