Query psy12735
Match_columns 233
No_of_seqs 200 out of 2195
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:20:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 2.8E-50 9.7E-55 416.3 19.5 217 1-217 855-1072(3245)
2 4akg_A Glutathione S-transfera 100.0 1E-44 3.5E-49 373.7 19.7 216 1-217 873-1090(2695)
3 3tif_A Uncharacterized ABC tra 99.8 1.2E-19 4.1E-24 149.7 4.8 122 51-185 30-209 (235)
4 3tui_C Methionine import ATP-b 99.8 2E-19 6.7E-24 156.7 5.8 125 50-187 52-229 (366)
5 2pcj_A ABC transporter, lipopr 99.8 6.9E-19 2.4E-23 144.1 6.0 121 51-185 29-203 (224)
6 4g1u_C Hemin import ATP-bindin 99.7 2.8E-19 9.5E-24 150.1 2.7 137 26-187 26-213 (266)
7 3gfo_A Cobalt import ATP-bindi 99.7 9.8E-19 3.4E-23 147.3 5.6 134 26-187 23-209 (275)
8 3fvq_A Fe(3+) IONS import ATP- 99.7 1.3E-18 4.3E-23 151.4 5.2 123 51-186 29-203 (359)
9 3rlf_A Maltose/maltodextrin im 99.7 7.6E-19 2.6E-23 153.8 3.6 123 51-186 28-198 (381)
10 1ji0_A ABC transporter; ATP bi 99.7 2E-18 6.9E-23 142.7 2.1 122 51-186 31-203 (240)
11 2yyz_A Sugar ABC transporter, 99.7 3.6E-18 1.2E-22 148.8 3.7 123 51-186 28-198 (359)
12 1z47_A CYSA, putative ABC-tran 99.7 3.1E-18 1.1E-22 148.9 3.3 132 26-185 30-209 (355)
13 2ff7_A Alpha-hemolysin translo 99.7 1.3E-17 4.4E-22 138.5 6.6 121 51-186 34-208 (247)
14 2ixe_A Antigen peptide transpo 99.7 1.1E-17 3.8E-22 140.7 6.3 133 26-186 34-221 (271)
15 2olj_A Amino acid ABC transpor 99.7 2.1E-18 7.2E-23 144.5 1.7 123 50-186 48-223 (263)
16 2onk_A Molybdate/tungstate ABC 99.7 4.3E-18 1.5E-22 140.8 3.4 121 53-186 25-191 (240)
17 2it1_A 362AA long hypothetical 99.7 3.8E-18 1.3E-22 148.7 2.8 122 51-185 28-197 (362)
18 1oxx_K GLCV, glucose, ABC tran 99.7 3.5E-18 1.2E-22 148.7 2.1 123 51-186 30-205 (353)
19 1v43_A Sugar-binding transport 99.7 5.1E-18 1.7E-22 148.5 3.0 122 51-185 36-205 (372)
20 3d31_A Sulfate/molybdate ABC t 99.7 6.1E-18 2.1E-22 146.8 3.5 122 51-185 25-191 (348)
21 1g29_1 MALK, maltose transport 99.7 6.4E-18 2.2E-22 148.0 3.7 122 51-185 28-203 (372)
22 1vpl_A ABC transporter, ATP-bi 99.7 3.1E-18 1.1E-22 142.9 1.5 123 51-187 40-211 (256)
23 1sgw_A Putative ABC transporte 99.7 4.9E-18 1.7E-22 138.1 2.2 123 51-187 34-198 (214)
24 3nh6_A ATP-binding cassette SU 99.7 7.6E-18 2.6E-22 143.8 2.9 124 49-187 77-254 (306)
25 1b0u_A Histidine permease; ABC 99.7 4.5E-18 1.5E-22 142.5 1.0 122 51-186 31-217 (262)
26 2d2e_A SUFC protein; ABC-ATPas 99.7 2.6E-17 8.8E-22 136.9 4.9 122 51-186 28-207 (250)
27 2yz2_A Putative ABC transporte 99.7 3.7E-17 1.3E-21 137.2 4.8 122 51-186 32-202 (266)
28 2qi9_C Vitamin B12 import ATP- 99.7 7E-18 2.4E-22 140.2 0.3 121 51-186 25-197 (249)
29 2cbz_A Multidrug resistance-as 99.7 7.6E-17 2.6E-21 133.0 6.0 145 26-202 20-205 (237)
30 1g6h_A High-affinity branched- 99.6 2.3E-17 7.9E-22 137.7 2.3 133 26-187 22-218 (257)
31 2nq2_C Hypothetical ABC transp 99.6 5.9E-17 2E-21 135.0 4.5 123 51-186 30-193 (253)
32 1mv5_A LMRA, multidrug resista 99.6 3.8E-17 1.3E-21 135.3 3.2 130 26-185 17-201 (243)
33 2ihy_A ABC transporter, ATP-bi 99.6 9.5E-18 3.2E-22 141.6 -0.7 123 51-187 46-228 (279)
34 2ghi_A Transport protein; mult 99.6 1.2E-16 4.2E-21 133.5 6.0 120 51-186 45-218 (260)
35 2zu0_C Probable ATP-dependent 99.6 1.3E-16 4.3E-21 134.0 6.1 123 50-186 44-228 (267)
36 3gd7_A Fusion complex of cysti 99.6 1.1E-16 3.9E-21 140.7 5.5 130 26-186 36-218 (390)
37 2pze_A Cystic fibrosis transme 99.6 4.7E-16 1.6E-20 127.6 6.7 130 26-185 23-193 (229)
38 3qf4_A ABC transporter, ATP-bi 99.6 3.7E-16 1.3E-20 144.5 6.3 135 50-203 367-555 (587)
39 3b5x_A Lipid A export ATP-bind 99.6 2.9E-16 9.9E-21 145.1 5.3 123 49-186 366-543 (582)
40 3ozx_A RNAse L inhibitor; ATP 99.6 2.2E-16 7.4E-21 144.5 4.4 135 49-197 291-460 (538)
41 2pjz_A Hypothetical protein ST 99.6 2.6E-16 8.8E-21 131.8 2.9 118 52-187 30-190 (263)
42 3qf4_B Uncharacterized ABC tra 99.6 3.9E-16 1.3E-20 144.6 4.1 135 50-203 379-567 (598)
43 4a82_A Cystic fibrosis transme 99.6 3.5E-16 1.2E-20 144.5 3.0 135 50-203 365-553 (578)
44 3b60_A Lipid A export ATP-bind 99.6 9.3E-16 3.2E-20 141.7 4.2 134 50-202 367-555 (582)
45 2bbs_A Cystic fibrosis transme 99.6 2E-15 6.7E-20 128.1 5.7 122 49-185 61-222 (290)
46 3j16_B RLI1P; ribosome recycli 99.5 4.1E-15 1.4E-19 137.7 6.6 123 51-186 377-532 (608)
47 3b85_A Phosphate starvation-in 99.5 8.3E-15 2.8E-19 118.5 7.2 121 46-176 16-161 (208)
48 2yl4_A ATP-binding cassette SU 99.5 1.8E-15 6.1E-20 140.1 3.6 121 50-185 368-545 (595)
49 3ozx_A RNAse L inhibitor; ATP 99.5 7.3E-16 2.5E-20 141.0 0.7 132 50-197 23-211 (538)
50 3j16_B RLI1P; ribosome recycli 99.5 8.2E-16 2.8E-20 142.3 0.9 134 49-197 100-295 (608)
51 4f4c_A Multidrug resistance pr 99.5 5.1E-15 1.8E-19 147.7 5.7 140 50-203 1103-1293(1321)
52 3bk7_A ABC transporter ATP-bin 99.5 3.5E-15 1.2E-19 138.2 3.9 124 50-186 380-536 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.5 5.2E-15 1.8E-19 135.5 4.5 124 50-186 310-466 (538)
54 1yqt_A RNAse L inhibitor; ATP- 99.5 6.6E-15 2.3E-19 134.7 4.2 134 48-196 43-231 (538)
55 4gp7_A Metallophosphoesterase; 99.5 3.2E-15 1.1E-19 117.1 0.5 123 50-186 7-163 (171)
56 3bk7_A ABC transporter ATP-bin 99.5 3.7E-15 1.3E-19 138.1 0.6 134 49-197 114-302 (607)
57 4f4c_A Multidrug resistance pr 99.5 1.5E-14 5.1E-19 144.4 4.8 135 50-201 442-628 (1321)
58 3g5u_A MCG1178, multidrug resi 99.5 1.6E-14 5.6E-19 143.8 3.6 122 50-186 1057-1234(1284)
59 3g5u_A MCG1178, multidrug resi 99.4 2.1E-14 7.1E-19 143.1 3.6 124 50-186 414-589 (1284)
60 1ye8_A Protein THEP1, hypothet 99.4 3.1E-13 1E-17 106.6 6.8 126 54-202 2-164 (178)
61 3ux8_A Excinuclease ABC, A sub 99.3 5E-13 1.7E-17 125.3 5.4 67 105-185 199-267 (670)
62 2iw3_A Elongation factor 3A; a 99.3 7.4E-14 2.5E-18 134.5 -1.5 63 107-186 900-962 (986)
63 2pt7_A CAG-ALFA; ATPase, prote 99.3 8.4E-12 2.9E-16 107.6 9.7 124 45-197 164-288 (330)
64 3ux8_A Excinuclease ABC, A sub 99.3 2.6E-12 8.9E-17 120.5 4.6 71 105-186 540-610 (670)
65 2eyu_A Twitching motility prot 99.2 2.9E-11 1E-15 100.9 9.7 87 49-143 22-110 (261)
66 2iw3_A Elongation factor 3A; a 99.2 2E-12 7E-17 124.5 2.2 121 49-186 458-609 (986)
67 3jvv_A Twitching mobility prot 99.2 9.1E-11 3.1E-15 102.0 10.8 114 48-185 119-234 (356)
68 2npi_A Protein CLP1; CLP1-PCF1 99.2 5.4E-12 1.8E-16 113.3 2.6 121 45-183 131-299 (460)
69 2ewv_A Twitching motility prot 99.1 1.5E-10 5.3E-15 101.2 9.4 85 49-145 133-223 (372)
70 1tq4_A IIGP1, interferon-induc 99.1 6.9E-12 2.4E-16 111.0 -2.2 132 26-159 38-212 (413)
71 2ehv_A Hypothetical protein PH 99.1 2.1E-10 7.2E-15 93.8 6.7 33 49-81 27-61 (251)
72 3pih_A Uvrabc system protein A 99.1 7.7E-11 2.6E-15 113.3 4.6 72 104-186 801-872 (916)
73 1sxj_E Activator 1 40 kDa subu 99.1 7.9E-10 2.7E-14 95.2 10.6 146 55-214 39-203 (354)
74 4aby_A DNA repair protein RECN 99.1 2.5E-11 8.5E-16 107.2 0.9 71 109-196 296-368 (415)
75 2vf7_A UVRA2, excinuclease ABC 99.0 3.9E-11 1.3E-15 114.4 2.0 71 104-185 726-796 (842)
76 3b9q_A Chloroplast SRP recepto 99.0 6.4E-09 2.2E-13 88.4 15.1 41 50-90 98-138 (302)
77 2w0m_A SSO2452; RECA, SSPF, un 99.0 2.5E-10 8.7E-15 92.1 5.9 41 49-89 20-60 (235)
78 3thx_B DNA mismatch repair pro 99.0 6.4E-10 2.2E-14 107.0 7.4 122 50-186 671-800 (918)
79 2og2_A Putative signal recogni 99.0 1.2E-08 4E-13 88.7 14.6 40 51-90 156-195 (359)
80 3sop_A Neuronal-specific septi 99.0 4.6E-10 1.6E-14 94.0 5.5 34 54-87 4-37 (270)
81 1s96_A Guanylate kinase, GMP k 99.0 7.7E-10 2.6E-14 89.9 6.5 49 41-89 5-55 (219)
82 2gza_A Type IV secretion syste 98.9 3.6E-09 1.2E-13 92.1 10.3 94 44-144 167-265 (361)
83 4a74_A DNA repair and recombin 98.9 8.3E-10 2.8E-14 89.1 5.3 29 49-77 22-50 (231)
84 3szr_A Interferon-induced GTP- 98.9 6.2E-10 2.1E-14 103.2 4.7 104 54-157 47-178 (608)
85 2ygr_A Uvrabc system protein A 98.9 6.7E-10 2.3E-14 106.9 5.0 71 104-185 859-929 (993)
86 1ewq_A DNA mismatch repair pro 98.9 3.3E-09 1.1E-13 100.5 9.5 115 52-185 576-701 (765)
87 3thx_A DNA mismatch repair pro 98.9 2.2E-09 7.7E-14 103.5 7.7 123 50-185 660-788 (934)
88 1tf7_A KAIC; homohexamer, hexa 98.9 3.8E-10 1.3E-14 102.9 2.2 120 48-182 277-417 (525)
89 2i3b_A HCR-ntpase, human cance 98.9 1.6E-09 5.5E-14 86.0 4.8 35 52-88 1-35 (189)
90 2r6f_A Excinuclease ABC subuni 98.8 2.5E-09 8.7E-14 102.7 6.2 70 105-185 842-911 (972)
91 1tf7_A KAIC; homohexamer, hexa 98.8 1.2E-09 3.9E-14 99.7 2.8 125 49-185 36-188 (525)
92 3ec2_A DNA replication protein 98.8 1.1E-08 3.8E-13 79.8 7.2 30 50-79 36-65 (180)
93 4fcw_A Chaperone protein CLPB; 98.8 1E-07 3.5E-12 80.4 13.3 136 53-200 48-215 (311)
94 3aez_A Pantothenate kinase; tr 98.8 5.6E-10 1.9E-14 95.4 -1.2 33 49-81 87-119 (312)
95 1cr0_A DNA primase/helicase; R 98.8 1.1E-08 3.9E-13 86.2 6.8 41 47-87 30-71 (296)
96 3qf7_A RAD50; ABC-ATPase, ATPa 98.7 1.5E-08 5E-13 88.4 7.5 67 107-185 278-348 (365)
97 2kjq_A DNAA-related protein; s 98.7 2.3E-08 7.8E-13 76.2 7.2 30 51-80 35-64 (149)
98 1e69_A Chromosome segregation 98.7 1.7E-08 5.7E-13 86.4 6.4 79 107-199 218-297 (322)
99 1rj9_A FTSY, signal recognitio 98.7 1.3E-07 4.5E-12 80.3 11.9 40 51-90 101-140 (304)
100 1wb9_A DNA mismatch repair pro 98.7 2.6E-08 8.8E-13 94.9 7.9 26 51-76 606-631 (800)
101 1nlf_A Regulatory protein REPA 98.7 2.8E-08 9.4E-13 83.2 6.1 29 49-77 27-55 (279)
102 1htw_A HI0065; nucleotide-bind 98.7 8.2E-09 2.8E-13 79.6 2.6 38 49-87 30-67 (158)
103 3qkt_A DNA double-strand break 98.6 8.1E-08 2.8E-12 82.7 9.1 78 107-198 247-328 (339)
104 2o8b_B DNA mismatch repair pro 98.6 1.7E-08 5.9E-13 98.3 5.1 116 52-185 789-915 (1022)
105 1pzn_A RAD51, DNA repair and r 98.6 4.2E-08 1.4E-12 85.0 6.5 28 49-76 128-155 (349)
106 1sxj_C Activator 1 40 kDa subu 98.6 4.8E-07 1.6E-11 77.7 13.0 130 44-201 36-169 (340)
107 1z6g_A Guanylate kinase; struc 98.6 1.4E-08 4.9E-13 82.1 2.6 34 49-85 20-53 (218)
108 2yhs_A FTSY, cell division pro 98.6 4.2E-07 1.4E-11 81.8 12.1 41 50-90 291-331 (503)
109 2qm8_A GTPase/ATPase; G protei 98.6 4.4E-08 1.5E-12 84.5 5.5 46 47-92 50-95 (337)
110 3k1j_A LON protease, ATP-depen 98.6 2.3E-07 8E-12 85.8 10.5 38 43-80 51-88 (604)
111 2chg_A Replication factor C sm 98.6 2E-06 6.8E-11 68.0 14.5 121 54-202 40-162 (226)
112 2cvh_A DNA repair and recombin 98.6 5.2E-08 1.8E-12 77.9 5.1 36 49-87 17-52 (220)
113 2oap_1 GSPE-2, type II secreti 98.6 2.5E-07 8.4E-12 84.0 10.0 43 45-87 253-295 (511)
114 3m6a_A ATP-dependent protease 98.6 9.1E-08 3.1E-12 87.6 7.0 140 51-202 107-254 (543)
115 1njg_A DNA polymerase III subu 98.5 2.6E-06 8.8E-11 68.0 14.8 146 53-214 46-199 (250)
116 2v9p_A Replication protein E1; 98.5 6.5E-08 2.2E-12 82.2 5.0 39 43-84 117-155 (305)
117 1znw_A Guanylate kinase, GMP k 98.5 4E-08 1.4E-12 78.6 3.5 30 48-77 16-45 (207)
118 1p9r_A General secretion pathw 98.5 4.5E-07 1.5E-11 80.3 9.3 59 27-89 146-204 (418)
119 1lvg_A Guanylate kinase, GMP k 98.5 6.6E-08 2.3E-12 76.9 3.4 28 50-77 2-29 (198)
120 1fnn_A CDC6P, cell division co 98.5 6.4E-06 2.2E-10 71.1 16.0 148 54-214 46-207 (389)
121 1n0w_A DNA repair protein RAD5 98.4 1.1E-07 3.8E-12 77.1 4.3 27 49-75 21-47 (243)
122 1sq5_A Pantothenate kinase; P- 98.4 2.5E-07 8.4E-12 78.7 6.0 39 50-88 78-118 (308)
123 3h4m_A Proteasome-activating n 98.4 4.2E-06 1.4E-10 69.6 13.3 137 50-214 49-202 (285)
124 1sxj_D Activator 1 41 kDa subu 98.4 1.1E-06 3.8E-11 75.1 10.0 132 44-201 48-192 (353)
125 3tr0_A Guanylate kinase, GMP k 98.4 1.1E-07 3.9E-12 75.2 3.3 28 49-76 4-31 (205)
126 3c8u_A Fructokinase; YP_612366 98.4 1.9E-07 6.4E-12 74.7 4.3 31 50-80 20-50 (208)
127 1g8p_A Magnesium-chelatase 38 98.4 1E-06 3.5E-11 75.3 8.8 71 131-201 144-218 (350)
128 3e70_C DPA, signal recognition 98.4 2.9E-07 9.8E-12 79.1 5.1 41 51-91 128-168 (328)
129 3syl_A Protein CBBX; photosynt 98.4 6.8E-06 2.3E-10 69.0 13.4 133 52-215 67-219 (309)
130 3t15_A Ribulose bisphosphate c 98.4 3.7E-06 1.2E-10 70.9 11.6 147 52-214 36-199 (293)
131 3bos_A Putative DNA replicatio 98.3 1.3E-05 4.3E-10 64.3 14.2 126 51-214 51-188 (242)
132 1a5t_A Delta prime, HOLB; zinc 98.3 3.8E-05 1.3E-09 65.7 17.9 157 44-217 13-180 (334)
133 2jeo_A Uridine-cytidine kinase 98.3 1.1E-07 3.6E-12 78.1 1.5 27 50-76 23-49 (245)
134 3a00_A Guanylate kinase, GMP k 98.3 3.2E-07 1.1E-11 72.0 3.8 26 52-77 1-26 (186)
135 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.3E-05 4.4E-10 65.6 12.9 139 50-216 37-193 (262)
136 1kgd_A CASK, peripheral plasma 98.3 3.9E-07 1.3E-11 71.2 3.5 27 51-77 4-30 (180)
137 1zp6_A Hypothetical protein AT 98.3 3.2E-07 1.1E-11 71.8 3.0 27 49-75 6-32 (191)
138 2qby_A CDC6 homolog 1, cell di 98.3 4.2E-06 1.4E-10 72.0 10.4 147 52-212 45-209 (386)
139 3euj_A Chromosome partition pr 98.3 3E-07 1E-11 82.7 3.1 37 53-89 30-66 (483)
140 1jbk_A CLPB protein; beta barr 98.3 2.4E-06 8.3E-11 65.8 7.8 35 44-78 33-69 (195)
141 2v1u_A Cell division control p 98.3 9.7E-06 3.3E-10 69.8 12.3 151 51-214 43-215 (387)
142 1sxj_B Activator 1 37 kDa subu 98.3 9.4E-06 3.2E-10 68.2 11.9 129 55-214 45-176 (323)
143 1r6b_X CLPA protein; AAA+, N-t 98.3 2.3E-05 7.7E-10 74.3 15.7 147 54-214 490-667 (758)
144 3asz_A Uridine kinase; cytidin 98.3 4.4E-07 1.5E-11 72.3 3.4 29 50-78 4-32 (211)
145 3pfi_A Holliday junction ATP-d 98.3 2.2E-05 7.5E-10 66.9 14.2 134 53-214 56-198 (338)
146 1in4_A RUVB, holliday junction 98.2 8.3E-06 2.8E-10 69.9 11.4 122 53-202 52-181 (334)
147 1jr3_A DNA polymerase III subu 98.2 1.3E-05 4.5E-10 68.9 12.7 143 53-214 39-188 (373)
148 2qby_B CDC6 homolog 3, cell di 98.2 7.3E-06 2.5E-10 70.8 11.1 160 32-214 22-211 (384)
149 1ls1_A Signal recognition part 98.2 1.2E-06 3.9E-11 74.2 5.7 42 51-92 97-138 (295)
150 2chq_A Replication factor C sm 98.2 3.6E-06 1.2E-10 70.7 8.8 123 54-202 40-162 (319)
151 3u61_B DNA polymerase accessor 98.2 1.5E-05 5.2E-10 67.5 12.4 115 53-202 49-166 (324)
152 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.2E-05 1.1E-09 65.9 14.4 140 51-216 44-195 (322)
153 3b9p_A CG5977-PA, isoform A; A 98.2 1.9E-05 6.5E-10 66.0 12.8 140 51-215 53-204 (297)
154 1rz3_A Hypothetical protein rb 98.2 1.6E-06 5.3E-11 68.9 5.7 39 51-89 21-59 (201)
155 3tqc_A Pantothenate kinase; bi 98.2 2.4E-06 8E-11 73.1 7.2 69 19-89 55-131 (321)
156 3uie_A Adenylyl-sulfate kinase 98.2 5.7E-07 2E-11 71.3 3.0 35 48-83 21-55 (200)
157 1iqp_A RFCS; clamp loader, ext 98.2 9.5E-06 3.2E-10 68.4 10.7 120 54-201 48-169 (327)
158 3cf0_A Transitional endoplasmi 98.2 1.2E-05 4.1E-10 67.8 11.0 137 50-214 47-200 (301)
159 1u0l_A Probable GTPase ENGC; p 98.2 1E-06 3.5E-11 74.6 4.4 37 49-85 166-202 (301)
160 3pxi_A Negative regulator of g 98.2 2.3E-05 7.7E-10 74.3 14.0 125 54-201 523-662 (758)
161 1tue_A Replication protein E1; 98.2 8.2E-06 2.8E-10 65.2 9.3 38 39-76 45-82 (212)
162 3uk6_A RUVB-like 2; hexameric 98.2 2.1E-05 7.1E-10 67.7 12.7 25 53-77 71-95 (368)
163 2obl_A ESCN; ATPase, hydrolase 98.2 5.4E-07 1.8E-11 78.0 2.5 47 41-87 60-106 (347)
164 2ce7_A Cell division protein F 98.2 2.2E-05 7.5E-10 70.6 12.8 122 52-202 49-187 (476)
165 1qvr_A CLPB protein; coiled co 98.2 1.2E-05 4E-10 77.3 11.8 149 53-214 589-771 (854)
166 2dpy_A FLII, flagellum-specifi 98.2 6.3E-07 2.2E-11 79.9 2.7 47 42-88 147-193 (438)
167 1lv7_A FTSH; alpha/beta domain 98.2 6.4E-05 2.2E-09 61.5 14.6 25 52-76 45-69 (257)
168 2j41_A Guanylate kinase; GMP, 98.2 9.2E-07 3.1E-11 69.9 3.3 30 49-78 3-32 (207)
169 1ixz_A ATP-dependent metallopr 98.2 3.5E-05 1.2E-09 63.0 12.9 26 52-77 49-74 (254)
170 2zan_A Vacuolar protein sortin 98.1 7.3E-05 2.5E-09 66.6 15.8 140 51-216 166-317 (444)
171 3lnc_A Guanylate kinase, GMP k 98.1 5E-07 1.7E-11 73.2 1.6 27 50-76 25-52 (231)
172 2f1r_A Molybdopterin-guanine d 98.1 3.5E-07 1.2E-11 71.2 0.6 28 53-80 3-30 (171)
173 2p65_A Hypothetical protein PF 98.1 8.8E-07 3E-11 68.3 2.9 27 52-78 43-69 (187)
174 1lw7_A Transcriptional regulat 98.1 7.3E-07 2.5E-11 77.4 2.0 33 48-80 164-198 (365)
175 4eun_A Thermoresistant glucoki 98.1 1.5E-06 5E-11 68.9 3.5 27 50-76 27-53 (200)
176 2qnr_A Septin-2, protein NEDD5 98.1 3.8E-06 1.3E-10 71.1 6.2 25 55-79 21-46 (301)
177 3tau_A Guanylate kinase, GMP k 98.1 1.3E-06 4.4E-11 69.8 3.0 29 50-78 6-34 (208)
178 1kag_A SKI, shikimate kinase I 98.1 1.7E-06 5.7E-11 66.6 3.4 27 51-77 3-29 (173)
179 3d8b_A Fidgetin-like protein 1 98.1 8.3E-05 2.8E-09 64.2 14.5 138 51-214 116-265 (357)
180 2yv5_A YJEQ protein; hydrolase 98.1 2.7E-06 9.3E-11 72.1 5.0 61 23-85 134-197 (302)
181 2bdt_A BH3686; alpha-beta prot 98.1 2E-06 6.7E-11 67.3 3.8 32 52-86 2-33 (189)
182 1t9h_A YLOQ, probable GTPase E 98.1 3.6E-07 1.2E-11 77.7 -0.5 38 48-85 169-206 (307)
183 1zu4_A FTSY; GTPase, signal re 98.1 1E-05 3.6E-10 69.1 8.4 41 51-91 104-144 (320)
184 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 5.8E-05 2E-09 68.2 13.7 143 44-200 33-181 (500)
185 2rcn_A Probable GTPase ENGC; Y 98.1 3E-06 1E-10 73.5 5.0 62 23-85 184-249 (358)
186 1ofh_A ATP-dependent HSL prote 98.1 1.6E-05 5.3E-10 66.6 9.3 136 51-202 49-203 (310)
187 1iy2_A ATP-dependent metallopr 98.0 6.7E-05 2.3E-09 62.3 12.5 26 52-77 73-98 (278)
188 1hqc_A RUVB; extended AAA-ATPa 98.0 0.00022 7.5E-09 60.0 15.8 123 52-201 38-168 (324)
189 3ney_A 55 kDa erythrocyte memb 98.0 2.8E-06 9.4E-11 67.7 3.6 27 51-77 18-44 (197)
190 3f9v_A Minichromosome maintena 98.0 6.4E-06 2.2E-10 76.1 6.5 126 54-198 329-473 (595)
191 3pxg_A Negative regulator of g 98.0 3.2E-05 1.1E-09 69.4 10.6 124 44-202 191-326 (468)
192 2r44_A Uncharacterized protein 98.0 1.7E-05 5.9E-10 67.4 8.5 135 44-201 38-185 (331)
193 2qp9_X Vacuolar protein sortin 98.0 7.9E-05 2.7E-09 64.3 12.7 138 52-216 84-233 (355)
194 3vfd_A Spastin; ATPase, microt 98.0 0.00017 5.8E-09 62.9 14.9 138 52-215 148-297 (389)
195 2qag_C Septin-7; cell cycle, c 98.0 1.1E-05 3.9E-10 71.3 7.2 23 55-77 34-56 (418)
196 4b4t_J 26S protease regulatory 98.0 6.9E-05 2.4E-09 65.8 12.1 137 49-216 179-335 (405)
197 1qhl_A Protein (cell division 98.0 6.1E-07 2.1E-11 73.1 -1.0 35 54-88 29-63 (227)
198 3pvs_A Replication-associated 98.0 8.1E-05 2.8E-09 66.4 12.4 135 44-214 40-179 (447)
199 3eie_A Vacuolar protein sortin 98.0 4.3E-05 1.5E-09 64.9 10.0 137 52-215 51-199 (322)
200 2bjv_A PSP operon transcriptio 98.0 7.7E-05 2.6E-09 61.3 11.3 133 49-198 26-174 (265)
201 1cke_A CK, MSSA, protein (cyti 97.9 4.1E-06 1.4E-10 67.3 3.3 25 52-76 5-29 (227)
202 1knq_A Gluconate kinase; ALFA/ 97.9 4.4E-06 1.5E-10 64.4 3.4 26 51-76 7-32 (175)
203 2vp4_A Deoxynucleoside kinase; 97.9 4.2E-06 1.4E-10 67.9 3.3 36 50-89 18-53 (230)
204 1l8q_A Chromosomal replication 97.9 3.5E-05 1.2E-09 65.4 9.2 33 52-84 37-69 (324)
205 2qag_B Septin-6, protein NEDD5 97.9 3.8E-06 1.3E-10 74.4 3.2 33 44-76 32-66 (427)
206 2bbw_A Adenylate kinase 4, AK4 97.9 2E-06 6.7E-11 70.4 1.2 23 51-73 26-48 (246)
207 2dr3_A UPF0273 protein PH0284; 97.9 1.1E-05 3.8E-10 65.2 5.6 39 49-87 20-58 (247)
208 4e22_A Cytidylate kinase; P-lo 97.9 2.1E-06 7.3E-11 70.7 1.3 24 50-73 25-48 (252)
209 2z4s_A Chromosomal replication 97.9 1.1E-05 3.6E-10 72.0 5.8 28 52-79 130-157 (440)
210 3vaa_A Shikimate kinase, SK; s 97.9 5.6E-06 1.9E-10 65.5 3.5 28 49-76 22-49 (199)
211 3lda_A DNA repair protein RAD5 97.9 6.9E-06 2.4E-10 72.3 4.4 25 49-73 175-199 (400)
212 1vma_A Cell division protein F 97.9 1.1E-05 3.8E-10 68.5 5.3 40 52-91 104-143 (306)
213 2r62_A Cell division protease 97.9 2.4E-05 8.1E-10 64.4 7.1 26 51-76 43-68 (268)
214 2dhr_A FTSH; AAA+ protein, hex 97.9 0.00025 8.7E-09 64.0 14.1 26 52-77 64-89 (499)
215 3cr8_A Sulfate adenylyltranfer 97.9 8.2E-06 2.8E-10 74.7 4.0 46 39-84 354-402 (552)
216 4b4t_L 26S protease subunit RP 97.9 0.0001 3.5E-09 65.4 10.9 137 49-216 212-368 (437)
217 2www_A Methylmalonic aciduria 97.8 1.5E-05 5.2E-10 68.8 5.1 41 52-92 74-114 (349)
218 2qor_A Guanylate kinase; phosp 97.8 7E-06 2.4E-10 65.1 2.8 29 48-76 8-36 (204)
219 3kta_A Chromosome segregation 97.8 9.9E-06 3.4E-10 62.8 3.6 25 54-78 28-52 (182)
220 1nij_A Hypothetical protein YJ 97.8 9.4E-06 3.2E-10 69.2 3.7 37 53-89 5-49 (318)
221 4b4t_M 26S protease regulatory 97.8 0.00014 4.7E-09 64.6 11.1 136 50-216 213-368 (434)
222 3pxi_A Negative regulator of g 97.8 4.4E-05 1.5E-09 72.3 8.4 126 42-202 189-326 (758)
223 1ypw_A Transitional endoplasmi 97.8 5.2E-05 1.8E-09 72.4 8.9 28 49-76 235-262 (806)
224 2pez_A Bifunctional 3'-phospho 97.8 2.1E-05 7E-10 60.9 4.9 33 51-83 4-36 (179)
225 3hu3_A Transitional endoplasmi 97.8 0.00021 7.1E-09 64.4 12.1 123 50-200 236-371 (489)
226 2px0_A Flagellar biosynthesis 97.8 2E-05 6.9E-10 66.5 5.2 41 51-91 104-145 (296)
227 4b4t_K 26S protease regulatory 97.8 9.8E-05 3.4E-09 65.4 9.6 136 50-216 204-360 (428)
228 2ius_A DNA translocase FTSK; n 97.8 0.00027 9.1E-09 64.0 12.5 46 49-94 164-211 (512)
229 1svm_A Large T antigen; AAA+ f 97.8 7.2E-06 2.5E-10 71.6 2.2 33 44-76 161-193 (377)
230 2qt1_A Nicotinamide riboside k 97.8 9.8E-06 3.4E-10 64.3 2.6 29 48-76 17-45 (207)
231 3kl4_A SRP54, signal recogniti 97.8 0.00024 8.2E-09 63.0 11.6 39 52-90 97-135 (433)
232 1ojl_A Transcriptional regulat 97.8 0.00035 1.2E-08 59.0 12.3 151 50-215 23-192 (304)
233 2yvu_A Probable adenylyl-sulfa 97.8 2.4E-05 8.2E-10 60.9 4.7 35 51-85 12-46 (186)
234 1np6_A Molybdopterin-guanine d 97.7 3.6E-05 1.2E-09 59.9 5.5 35 53-87 7-41 (174)
235 3nwj_A ATSK2; P loop, shikimat 97.7 2E-05 6.7E-10 65.0 4.2 33 44-76 37-72 (250)
236 2x8a_A Nuclear valosin-contain 97.7 1.4E-05 4.8E-10 66.7 3.1 27 51-77 43-69 (274)
237 2p67_A LAO/AO transport system 97.7 5E-05 1.7E-09 65.3 6.7 44 49-92 53-96 (341)
238 1d2n_A N-ethylmaleimide-sensit 97.7 0.00065 2.2E-08 56.0 13.2 25 52-76 64-88 (272)
239 1pui_A ENGB, probable GTP-bind 97.7 5.2E-06 1.8E-10 65.6 0.3 28 49-76 23-50 (210)
240 1um8_A ATP-dependent CLP prote 97.7 7.4E-05 2.5E-09 64.7 7.4 25 52-76 72-96 (376)
241 3te6_A Regulatory protein SIR3 97.7 0.00025 8.4E-09 60.4 10.4 60 18-77 7-70 (318)
242 4b4t_I 26S protease regulatory 97.7 0.00018 6.1E-09 63.6 9.3 136 50-216 214-369 (437)
243 1jjv_A Dephospho-COA kinase; P 97.7 2.4E-05 8.2E-10 61.9 3.3 21 54-74 4-24 (206)
244 3cm0_A Adenylate kinase; ATP-b 97.7 2.4E-05 8.1E-10 60.7 3.2 27 50-76 2-28 (186)
245 3hws_A ATP-dependent CLP prote 97.7 2.6E-05 8.8E-10 67.4 3.8 26 51-76 50-75 (363)
246 2gno_A DNA polymerase III, gam 97.6 0.0017 5.8E-08 54.9 14.8 138 46-216 10-151 (305)
247 4akg_A Glutathione S-transfera 97.6 0.0013 4.4E-08 69.7 16.8 143 32-202 625-781 (2695)
248 1odf_A YGR205W, hypothetical 3 97.6 2.6E-05 8.8E-10 65.7 3.4 29 51-79 30-58 (290)
249 1qhx_A CPT, protein (chloramph 97.6 3.2E-05 1.1E-09 59.6 3.5 25 52-76 3-27 (178)
250 3kb2_A SPBC2 prophage-derived 97.6 3.2E-05 1.1E-09 58.9 3.5 23 54-76 3-25 (173)
251 2xau_A PRE-mRNA-splicing facto 97.6 0.00053 1.8E-08 65.1 12.5 51 22-75 82-132 (773)
252 3t61_A Gluconokinase; PSI-biol 97.6 3E-05 1E-09 61.1 3.4 24 53-76 19-42 (202)
253 1xjc_A MOBB protein homolog; s 97.6 7E-05 2.4E-09 58.0 5.3 37 53-89 5-41 (169)
254 1u0j_A DNA replication protein 97.6 0.00024 8.3E-09 58.9 8.9 54 22-76 74-128 (267)
255 4b4t_H 26S protease regulatory 97.6 0.00031 1.1E-08 62.6 10.1 137 49-216 240-396 (467)
256 1ex7_A Guanylate kinase; subst 97.6 3.2E-05 1.1E-09 60.9 3.3 24 53-76 2-25 (186)
257 1ypw_A Transitional endoplasmi 97.6 1.5E-05 5E-10 76.2 1.5 124 50-201 509-648 (806)
258 2if2_A Dephospho-COA kinase; a 97.6 3.1E-05 1E-09 61.1 3.1 21 54-74 3-23 (204)
259 1oix_A RAS-related protein RAB 97.6 3.2E-05 1.1E-09 60.4 3.1 24 54-77 31-54 (191)
260 2w58_A DNAI, primosome compone 97.6 0.00019 6.4E-09 56.4 7.6 33 53-85 55-87 (202)
261 2c95_A Adenylate kinase 1; tra 97.6 5.2E-05 1.8E-09 59.1 4.2 29 48-76 5-33 (196)
262 2f9l_A RAB11B, member RAS onco 97.6 3.9E-05 1.3E-09 60.2 3.4 23 54-76 7-29 (199)
263 1m7g_A Adenylylsulfate kinase; 97.6 5.8E-05 2E-09 60.1 4.3 32 46-77 19-50 (211)
264 4eaq_A DTMP kinase, thymidylat 97.5 5.4E-05 1.9E-09 61.4 3.9 36 49-85 23-58 (229)
265 1kht_A Adenylate kinase; phosp 97.5 9.1E-05 3.1E-09 57.4 5.0 29 52-80 3-31 (192)
266 2zr9_A Protein RECA, recombina 97.5 7.9E-05 2.7E-09 64.3 4.9 38 51-88 60-97 (349)
267 1gvn_B Zeta; postsegregational 97.5 6E-05 2.1E-09 63.2 4.0 25 52-76 33-57 (287)
268 2e87_A Hypothetical protein PH 97.5 0.00028 9.5E-09 60.9 8.2 25 52-76 167-191 (357)
269 1nks_A Adenylate kinase; therm 97.5 9.1E-05 3.1E-09 57.4 4.6 32 54-85 3-34 (194)
270 1qvr_A CLPB protein; coiled co 97.5 0.00011 3.8E-09 70.5 6.0 36 43-78 180-217 (854)
271 2bwj_A Adenylate kinase 5; pho 97.5 6.9E-05 2.4E-09 58.5 3.8 30 47-76 7-36 (199)
272 3trf_A Shikimate kinase, SK; a 97.5 6.6E-05 2.2E-09 58.2 3.6 25 52-76 5-29 (185)
273 2rhm_A Putative kinase; P-loop 97.5 4.8E-05 1.6E-09 59.2 2.7 26 51-76 4-29 (193)
274 3dm5_A SRP54, signal recogniti 97.5 0.0019 6.5E-08 57.4 13.2 39 52-90 100-138 (443)
275 1nn5_A Similar to deoxythymidy 97.5 7.7E-05 2.6E-09 59.0 3.8 35 49-83 6-40 (215)
276 2v54_A DTMP kinase, thymidylat 97.5 5.7E-05 2E-09 59.3 3.0 26 51-76 3-28 (204)
277 3iij_A Coilin-interacting nucl 97.4 6.3E-05 2.2E-09 58.1 3.1 26 51-76 10-35 (180)
278 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.7E-05 2.6E-09 56.4 3.4 23 54-76 25-47 (149)
279 1gtv_A TMK, thymidylate kinase 97.4 2.5E-05 8.6E-10 61.9 0.7 30 54-83 2-31 (214)
280 1via_A Shikimate kinase; struc 97.4 8.2E-05 2.8E-09 57.2 3.4 23 54-76 6-28 (175)
281 2gj8_A MNME, tRNA modification 97.4 7.4E-05 2.5E-09 57.3 3.1 26 51-76 3-28 (172)
282 2wwf_A Thymidilate kinase, put 97.4 9E-05 3.1E-09 58.5 3.6 34 50-83 8-41 (212)
283 2jaq_A Deoxyguanosine kinase; 97.4 8.8E-05 3E-09 58.1 3.5 24 54-77 2-25 (205)
284 3lw7_A Adenylate kinase relate 97.4 8.2E-05 2.8E-09 56.5 3.2 19 54-72 3-21 (179)
285 1w1w_A Structural maintenance 97.4 8.6E-05 3E-09 65.7 3.7 28 51-78 25-52 (430)
286 2plr_A DTMP kinase, probable t 97.4 0.00012 4.1E-09 57.6 4.2 30 51-80 3-32 (213)
287 1vht_A Dephospho-COA kinase; s 97.4 7.7E-05 2.6E-09 59.5 3.0 23 52-74 4-26 (218)
288 3n70_A Transport activator; si 97.4 0.0004 1.4E-08 51.9 6.8 36 49-84 21-56 (145)
289 3r20_A Cytidylate kinase; stru 97.4 9.9E-05 3.4E-09 60.2 3.6 26 51-76 8-33 (233)
290 1ly1_A Polynucleotide kinase; 97.4 9.6E-05 3.3E-09 56.7 3.4 21 54-74 4-24 (181)
291 1y63_A LMAJ004144AAA protein; 97.4 0.0001 3.5E-09 57.4 3.5 25 51-75 9-33 (184)
292 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 6.3E-05 2.2E-09 65.9 2.5 28 48-75 16-43 (392)
293 1j8m_F SRP54, signal recogniti 97.4 0.00016 5.6E-09 61.0 4.9 40 52-91 98-137 (297)
294 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00017 5.9E-09 62.2 5.0 40 38-77 7-49 (359)
295 2z0h_A DTMP kinase, thymidylat 97.4 0.00018 6E-09 56.1 4.7 31 54-84 2-32 (197)
296 2wji_A Ferrous iron transport 97.4 0.0001 3.5E-09 56.0 3.2 24 53-76 4-27 (165)
297 3ice_A Transcription terminati 97.4 0.00011 3.6E-09 64.3 3.6 39 41-79 163-201 (422)
298 2ffh_A Protein (FFH); SRP54, s 97.3 0.0002 6.7E-09 63.5 5.4 41 52-92 98-138 (425)
299 2r6a_A DNAB helicase, replicat 97.3 0.00033 1.1E-08 62.4 6.8 41 48-88 199-240 (454)
300 2ze6_A Isopentenyl transferase 97.3 0.0001 3.6E-09 60.6 3.3 23 54-76 3-25 (253)
301 3vkg_A Dynein heavy chain, cyt 97.3 0.0015 5.3E-08 69.9 12.5 166 14-200 1600-1812(3245)
302 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0019 6.6E-08 61.0 12.2 27 51-77 206-232 (758)
303 3cf2_A TER ATPase, transitiona 97.3 0.001 3.5E-08 63.3 9.9 119 51-200 237-371 (806)
304 3llm_A ATP-dependent RNA helic 97.3 0.00022 7.6E-09 57.6 4.6 30 44-73 68-97 (235)
305 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00018 6.1E-09 59.3 4.0 33 51-83 3-35 (260)
306 2pbr_A DTMP kinase, thymidylat 97.3 0.00021 7.2E-09 55.4 4.2 30 54-83 2-31 (195)
307 2o5v_A DNA replication and rep 97.3 0.00011 3.9E-09 63.6 2.9 29 130-158 291-319 (359)
308 1f2t_B RAD50 ABC-ATPase; DNA d 97.3 0.00015 5.1E-09 54.9 3.1 68 104-183 53-124 (148)
309 3geh_A MNME, tRNA modification 97.3 0.00029 1E-08 63.0 5.5 63 6-75 185-247 (462)
310 3hr8_A Protein RECA; alpha and 97.3 0.00019 6.5E-09 62.1 4.2 36 51-86 60-95 (356)
311 2zej_A Dardarin, leucine-rich 97.3 0.00013 4.5E-09 56.4 2.9 22 54-75 4-25 (184)
312 2p5t_B PEZT; postsegregational 97.3 9.7E-05 3.3E-09 60.6 2.2 27 51-77 31-57 (253)
313 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.8E-09 57.3 3.4 23 54-76 2-24 (216)
314 1tev_A UMP-CMP kinase; ploop, 97.2 0.00017 5.9E-09 55.9 3.4 25 52-76 3-27 (196)
315 1uf9_A TT1252 protein; P-loop, 97.2 0.00015 5.1E-09 56.8 3.0 24 52-75 8-31 (203)
316 2wjg_A FEOB, ferrous iron tran 97.2 0.00018 6.1E-09 55.4 3.4 23 53-75 8-30 (188)
317 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.7E-09 54.7 3.4 23 54-76 4-26 (173)
318 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.9E-09 57.2 3.6 26 51-76 3-28 (220)
319 2iyv_A Shikimate kinase, SK; t 97.2 0.0002 6.9E-09 55.4 3.4 24 53-76 3-26 (184)
320 3tlx_A Adenylate kinase 2; str 97.2 0.00027 9.1E-09 57.7 4.3 27 50-76 27-53 (243)
321 1q3t_A Cytidylate kinase; nucl 97.2 0.00021 7.1E-09 57.9 3.6 27 50-76 14-40 (236)
322 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00031 1.1E-08 61.2 5.0 34 51-84 34-67 (392)
323 3dl0_A Adenylate kinase; phosp 97.2 0.0002 6.8E-09 56.9 3.4 23 54-76 2-24 (216)
324 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.6E-09 57.6 3.3 26 51-76 6-31 (227)
325 2b8t_A Thymidine kinase; deoxy 97.2 0.0012 4E-08 53.4 7.8 37 49-85 9-45 (223)
326 1a7j_A Phosphoribulokinase; tr 97.2 0.00017 5.8E-09 60.6 2.9 34 52-85 5-38 (290)
327 1zak_A Adenylate kinase; ATP:A 97.2 0.00018 6.3E-09 57.5 2.9 25 52-76 5-29 (222)
328 1zuh_A Shikimate kinase; alpha 97.2 0.00026 8.9E-09 53.9 3.6 24 53-76 8-31 (168)
329 3qks_A DNA double-strand break 97.2 0.00024 8.2E-09 56.4 3.4 23 54-76 25-47 (203)
330 3umf_A Adenylate kinase; rossm 97.2 0.00022 7.6E-09 57.4 3.3 29 48-76 25-53 (217)
331 2vli_A Antibiotic resistance p 97.1 0.00018 6.1E-09 55.4 2.6 25 52-76 5-29 (183)
332 2cdn_A Adenylate kinase; phosp 97.1 0.00026 9E-09 55.6 3.6 24 53-76 21-44 (201)
333 3ec1_A YQEH GTPase; atnos1, at 97.1 0.00089 3E-08 58.1 7.1 59 17-75 118-185 (369)
334 2pt5_A Shikimate kinase, SK; a 97.1 0.00028 9.7E-09 53.5 3.4 23 54-76 2-24 (168)
335 1m2o_B GTP-binding protein SAR 97.1 0.00026 9E-09 55.0 3.3 23 52-74 23-45 (190)
336 3ake_A Cytidylate kinase; CMP 97.1 0.0003 1E-08 55.2 3.5 23 54-76 4-26 (208)
337 1udx_A The GTP-binding protein 97.1 0.00011 3.8E-09 64.9 1.1 27 50-76 155-181 (416)
338 2qtf_A Protein HFLX, GTP-bindi 97.1 0.0012 4E-08 57.3 7.5 22 55-76 182-203 (364)
339 1qf9_A UMP/CMP kinase, protein 97.1 0.00029 9.8E-09 54.5 3.2 24 53-76 7-30 (194)
340 1ukz_A Uridylate kinase; trans 97.1 0.00032 1.1E-08 55.1 3.3 24 53-76 16-39 (203)
341 3lxx_A GTPase IMAP family memb 97.0 0.00032 1.1E-08 56.7 3.3 25 53-77 30-54 (239)
342 1uj2_A Uridine-cytidine kinase 97.0 0.00035 1.2E-08 57.1 3.4 24 54-77 24-47 (252)
343 4edh_A DTMP kinase, thymidylat 97.0 0.00067 2.3E-08 54.3 4.9 36 51-86 5-40 (213)
344 3p32_A Probable GTPase RV1496/ 97.0 0.0013 4.4E-08 56.7 7.0 39 53-91 80-118 (355)
345 2grj_A Dephospho-COA kinase; T 97.0 0.00037 1.3E-08 55.0 3.2 23 53-75 13-35 (192)
346 1ega_A Protein (GTP-binding pr 97.0 0.00033 1.1E-08 59.1 3.0 23 53-75 9-31 (301)
347 3v9p_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 55.8 3.9 38 48-85 21-62 (227)
348 2qgz_A Helicase loader, putati 97.0 0.0016 5.6E-08 55.0 7.3 34 52-85 152-186 (308)
349 3be4_A Adenylate kinase; malar 97.0 0.00045 1.5E-08 55.1 3.6 25 52-76 5-29 (217)
350 1z2a_A RAS-related protein RAB 97.0 0.00044 1.5E-08 51.8 3.4 22 54-75 7-28 (168)
351 1e4v_A Adenylate kinase; trans 97.0 0.00041 1.4E-08 55.2 3.2 23 54-76 2-24 (214)
352 3sr0_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 55.1 3.4 23 54-76 2-24 (206)
353 3h2y_A GTPase family protein; 97.0 0.0018 6E-08 56.2 7.3 60 17-76 116-184 (368)
354 2ged_A SR-beta, signal recogni 97.0 0.00047 1.6E-08 53.3 3.4 24 52-75 48-71 (193)
355 3k53_A Ferrous iron transport 96.9 0.00039 1.3E-08 57.4 3.0 23 54-76 5-27 (271)
356 1kao_A RAP2A; GTP-binding prot 96.9 0.0005 1.7E-08 51.3 3.4 22 54-75 5-26 (167)
357 2xb4_A Adenylate kinase; ATP-b 96.9 0.00048 1.6E-08 55.3 3.4 23 54-76 2-24 (223)
358 3co5_A Putative two-component 96.9 0.00039 1.3E-08 51.9 2.7 28 49-76 24-51 (143)
359 2ce2_X GTPase HRAS; signaling 96.9 0.00046 1.6E-08 51.3 3.2 22 54-75 5-26 (166)
360 2dyk_A GTP-binding protein; GT 96.9 0.00051 1.7E-08 51.1 3.4 22 54-75 3-24 (161)
361 2erx_A GTP-binding protein DI- 96.9 0.00054 1.9E-08 51.4 3.3 22 53-74 4-25 (172)
362 1u8z_A RAS-related protein RAL 96.9 0.00056 1.9E-08 51.1 3.4 23 53-75 5-27 (168)
363 3gee_A MNME, tRNA modification 96.9 0.0018 6E-08 58.2 7.1 29 47-75 228-256 (476)
364 1zj6_A ADP-ribosylation factor 96.9 0.00084 2.9E-08 51.7 4.3 24 51-74 15-38 (187)
365 2nzj_A GTP-binding protein REM 96.9 0.00054 1.8E-08 51.8 3.2 22 54-75 6-27 (175)
366 1ek0_A Protein (GTP-binding pr 96.9 0.00061 2.1E-08 51.1 3.4 22 54-75 5-26 (170)
367 1ak2_A Adenylate kinase isoenz 96.9 0.00062 2.1E-08 54.9 3.6 25 52-76 16-40 (233)
368 1z0j_A RAB-22, RAS-related pro 96.9 0.00061 2.1E-08 51.1 3.4 23 54-76 8-30 (170)
369 2qmh_A HPR kinase/phosphorylas 96.9 0.00055 1.9E-08 54.4 3.1 24 52-75 34-57 (205)
370 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00061 2.1E-08 51.6 3.4 22 54-75 9-30 (177)
371 1c1y_A RAS-related protein RAP 96.9 0.00063 2.1E-08 50.9 3.4 22 54-75 5-26 (167)
372 1g16_A RAS-related protein SEC 96.9 0.00057 1.9E-08 51.3 3.2 22 54-75 5-26 (170)
373 1z08_A RAS-related protein RAB 96.9 0.00062 2.1E-08 51.2 3.3 22 54-75 8-29 (170)
374 3q72_A GTP-binding protein RAD 96.9 0.00044 1.5E-08 51.9 2.5 22 54-75 4-25 (166)
375 1ky3_A GTP-binding protein YPT 96.9 0.00063 2.2E-08 51.6 3.4 23 53-75 9-31 (182)
376 3q85_A GTP-binding protein REM 96.9 0.0006 2.1E-08 51.2 3.2 22 54-75 4-25 (169)
377 2lkc_A Translation initiation 96.9 0.00061 2.1E-08 51.7 3.3 24 52-75 8-31 (178)
378 1mky_A Probable GTP-binding pr 96.8 0.00058 2E-08 60.5 3.4 23 54-76 182-204 (439)
379 2fn4_A P23, RAS-related protei 96.8 0.00064 2.2E-08 51.5 3.1 22 54-75 11-32 (181)
380 1upt_A ARL1, ADP-ribosylation 96.8 0.00059 2E-08 51.3 2.9 24 51-74 6-29 (171)
381 1svi_A GTP-binding protein YSX 96.8 0.00062 2.1E-08 52.6 3.0 23 53-75 24-46 (195)
382 3lv8_A DTMP kinase, thymidylat 96.8 0.0012 4.2E-08 53.7 4.9 32 51-82 26-57 (236)
383 1sky_E F1-ATPase, F1-ATP synth 96.8 0.00079 2.7E-08 60.2 3.9 38 41-78 140-177 (473)
384 1r2q_A RAS-related protein RAB 96.8 0.00077 2.7E-08 50.4 3.4 21 54-74 8-28 (170)
385 4tmk_A Protein (thymidylate ki 96.8 0.0013 4.6E-08 52.6 4.8 34 51-84 2-36 (213)
386 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00078 2.7E-08 51.5 3.4 22 54-75 6-27 (189)
387 3bc1_A RAS-related protein RAB 96.8 0.0008 2.7E-08 51.6 3.4 22 54-75 13-34 (195)
388 3pqc_A Probable GTP-binding pr 96.8 0.00071 2.4E-08 52.0 3.0 22 54-75 25-46 (195)
389 3d3q_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 57.8 3.5 25 53-77 8-32 (340)
390 3tw8_B RAS-related protein RAB 96.8 0.00062 2.1E-08 51.6 2.7 22 54-75 11-32 (181)
391 3clv_A RAB5 protein, putative; 96.8 0.0008 2.7E-08 51.9 3.4 22 54-75 9-30 (208)
392 2oil_A CATX-8, RAS-related pro 96.8 0.00083 2.8E-08 51.9 3.4 22 54-75 27-48 (193)
393 3upu_A ATP-dependent DNA helic 96.8 0.0032 1.1E-07 56.1 7.6 55 27-81 18-74 (459)
394 3tqf_A HPR(Ser) kinase; transf 96.8 0.00077 2.6E-08 52.3 3.0 24 51-74 15-38 (181)
395 1r8s_A ADP-ribosylation factor 96.8 0.00088 3E-08 50.0 3.4 21 54-74 2-22 (164)
396 3lxw_A GTPase IMAP family memb 96.8 0.0008 2.7E-08 54.9 3.4 24 52-75 21-44 (247)
397 2hxs_A RAB-26, RAS-related pro 96.8 0.00089 3E-08 50.8 3.4 22 54-75 8-29 (178)
398 2f6r_A COA synthase, bifunctio 96.8 0.00069 2.4E-08 56.5 3.0 21 54-74 77-97 (281)
399 1ko7_A HPR kinase/phosphatase; 96.7 0.0026 9E-08 53.9 6.6 23 52-74 144-166 (314)
400 2cxx_A Probable GTP-binding pr 96.7 0.00074 2.5E-08 51.8 2.9 22 54-75 3-24 (190)
401 1f6b_A SAR1; gtpases, N-termin 96.7 0.00052 1.8E-08 53.7 2.0 21 54-74 27-47 (198)
402 3b1v_A Ferrous iron uptake tra 96.7 0.00078 2.7E-08 56.0 3.2 24 53-76 4-27 (272)
403 1ltq_A Polynucleotide kinase; 96.7 0.00083 2.8E-08 56.1 3.4 22 54-75 4-25 (301)
404 2y8e_A RAB-protein 6, GH09086P 96.7 0.00085 2.9E-08 50.7 3.2 22 53-74 15-36 (179)
405 3a8t_A Adenylate isopentenyltr 96.7 0.0008 2.7E-08 57.7 3.2 24 53-76 41-64 (339)
406 2v3c_C SRP54, signal recogniti 96.7 0.00081 2.8E-08 59.6 3.4 39 53-91 100-138 (432)
407 3con_A GTPase NRAS; structural 96.7 0.00094 3.2E-08 51.4 3.4 23 53-75 22-44 (190)
408 1z0f_A RAB14, member RAS oncog 96.7 0.00096 3.3E-08 50.4 3.4 22 54-75 17-38 (179)
409 2g6b_A RAS-related protein RAB 96.7 0.00096 3.3E-08 50.7 3.4 22 54-75 12-33 (180)
410 3crm_A TRNA delta(2)-isopenten 96.7 0.00085 2.9E-08 57.2 3.3 23 54-76 7-29 (323)
411 3t1o_A Gliding protein MGLA; G 96.7 0.00096 3.3E-08 51.3 3.4 24 54-77 16-39 (198)
412 1fzq_A ADP-ribosylation factor 96.7 0.00068 2.3E-08 52.2 2.5 23 53-75 17-39 (181)
413 1nrj_B SR-beta, signal recogni 96.7 0.00095 3.3E-08 52.7 3.4 24 53-76 13-36 (218)
414 2a9k_A RAS-related protein RAL 96.7 0.001 3.4E-08 50.7 3.4 23 53-75 19-41 (187)
415 2aka_B Dynamin-1; fusion prote 96.7 0.00081 2.8E-08 55.9 3.1 23 54-76 28-50 (299)
416 3exa_A TRNA delta(2)-isopenten 96.7 0.00094 3.2E-08 56.7 3.4 25 52-76 3-27 (322)
417 2efe_B Small GTP-binding prote 96.7 0.001 3.6E-08 50.5 3.3 22 54-75 14-35 (181)
418 3iby_A Ferrous iron transport 96.7 0.00096 3.3E-08 54.9 3.2 23 54-76 3-25 (256)
419 3cnl_A YLQF, putative uncharac 96.7 0.0013 4.4E-08 54.4 4.0 35 42-76 88-123 (262)
420 2bme_A RAB4A, RAS-related prot 96.7 0.001 3.5E-08 50.9 3.2 23 53-75 11-33 (186)
421 2bov_A RAla, RAS-related prote 96.6 0.0011 3.8E-08 51.5 3.4 22 54-75 16-37 (206)
422 3t34_A Dynamin-related protein 96.6 0.00096 3.3E-08 57.5 3.2 22 54-75 36-57 (360)
423 2qen_A Walker-type ATPase; unk 96.6 0.0021 7.3E-08 54.1 5.4 26 50-75 29-54 (350)
424 2h92_A Cytidylate kinase; ross 96.6 0.0011 3.9E-08 52.5 3.4 24 53-76 4-27 (219)
425 3e1s_A Exodeoxyribonuclease V, 96.6 0.0029 9.8E-08 58.1 6.5 39 47-85 199-237 (574)
426 3kkq_A RAS-related protein M-R 96.6 0.0012 4E-08 50.4 3.4 22 54-75 20-41 (183)
427 3ihw_A Centg3; RAS, centaurin, 96.6 0.0011 3.9E-08 51.1 3.3 21 54-74 22-42 (184)
428 1h65_A Chloroplast outer envel 96.6 0.0023 7.8E-08 52.7 5.3 23 53-75 40-62 (270)
429 2gf9_A RAS-related protein RAB 96.6 0.0012 4E-08 50.9 3.4 22 54-75 24-45 (189)
430 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0011 3.8E-08 50.9 3.2 23 53-75 8-30 (184)
431 1vg8_A RAS-related protein RAB 96.6 0.0012 4.1E-08 51.5 3.4 23 53-75 9-31 (207)
432 2wsm_A Hydrogenase expression/ 96.6 0.0044 1.5E-07 48.9 6.8 25 52-76 30-54 (221)
433 2c9o_A RUVB-like 1; hexameric 96.6 0.0028 9.5E-08 56.4 6.1 26 52-77 63-88 (456)
434 3tkl_A RAS-related protein RAB 96.6 0.0013 4.3E-08 50.8 3.4 22 54-75 18-39 (196)
435 2gf0_A GTP-binding protein DI- 96.6 0.0011 3.9E-08 51.1 3.1 23 53-75 9-31 (199)
436 3t5d_A Septin-7; GTP-binding p 96.6 0.00087 3E-08 55.5 2.5 21 54-74 10-30 (274)
437 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0013 4.4E-08 50.1 3.4 21 54-74 7-27 (186)
438 3zvl_A Bifunctional polynucleo 96.6 0.0012 4E-08 58.2 3.5 25 52-76 258-282 (416)
439 1moz_A ARL1, ADP-ribosylation 96.6 0.00063 2.2E-08 51.9 1.5 23 52-74 18-40 (183)
440 3dzd_A Transcriptional regulat 96.6 0.12 4E-06 44.6 16.1 184 13-214 102-317 (368)
441 2fg5_A RAB-22B, RAS-related pr 96.6 0.0012 4.1E-08 51.1 3.1 24 52-75 23-46 (192)
442 1z06_A RAS-related protein RAB 96.6 0.0013 4.5E-08 50.6 3.4 22 53-74 21-42 (189)
443 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00092 3.1E-08 58.6 2.7 28 48-75 18-45 (396)
444 2j37_W Signal recognition part 96.6 0.014 4.7E-07 52.7 10.4 37 54-90 103-139 (504)
445 1zbd_A Rabphilin-3A; G protein 96.6 0.0014 4.6E-08 51.1 3.4 22 54-75 10-31 (203)
446 1ksh_A ARF-like protein 2; sma 96.6 0.0012 4.1E-08 50.6 2.9 25 51-75 17-41 (186)
447 2qag_A Septin-2, protein NEDD5 96.6 0.00091 3.1E-08 57.8 2.5 22 54-75 39-60 (361)
448 3bwd_D RAC-like GTP-binding pr 96.5 0.0015 5E-08 49.7 3.4 24 52-75 8-31 (182)
449 3dz8_A RAS-related protein RAB 96.5 0.0013 4.5E-08 50.8 3.2 22 54-75 25-46 (191)
450 3def_A T7I23.11 protein; chlor 96.5 0.0024 8.2E-08 52.4 4.9 23 53-75 37-59 (262)
451 3oes_A GTPase rhebl1; small GT 96.5 0.0013 4.5E-08 51.3 3.2 24 52-75 24-47 (201)
452 3ld9_A DTMP kinase, thymidylat 96.5 0.002 7E-08 51.9 4.3 41 51-91 20-61 (223)
453 2a5j_A RAS-related protein RAB 96.5 0.0015 5.1E-08 50.5 3.4 22 54-75 23-44 (191)
454 3t5g_A GTP-binding protein RHE 96.5 0.0014 4.7E-08 50.0 3.2 22 53-74 7-28 (181)
455 2cjw_A GTP-binding protein GEM 96.5 0.0015 5E-08 50.9 3.4 21 54-74 8-28 (192)
456 1zd9_A ADP-ribosylation factor 96.5 0.0015 5.2E-08 50.3 3.4 24 52-75 22-45 (188)
457 3foz_A TRNA delta(2)-isopenten 96.5 0.0013 4.6E-08 55.6 3.3 24 53-76 11-34 (316)
458 3cbq_A GTP-binding protein REM 96.5 0.00094 3.2E-08 52.2 2.2 21 54-74 25-45 (195)
459 1x3s_A RAS-related protein RAB 96.5 0.0016 5.4E-08 50.1 3.4 23 53-75 16-38 (195)
460 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0014 4.8E-08 51.2 3.2 22 54-75 10-31 (206)
461 2gxq_A Heat resistant RNA depe 96.5 0.0062 2.1E-07 47.4 6.9 46 20-69 9-55 (207)
462 2atv_A RERG, RAS-like estrogen 96.5 0.0016 5.4E-08 50.5 3.4 23 53-75 29-51 (196)
463 3reg_A RHO-like small GTPase; 96.5 0.0016 5.5E-08 50.3 3.4 23 53-75 24-46 (194)
464 2p5s_A RAS and EF-hand domain 96.5 0.0016 5.5E-08 50.7 3.4 23 53-75 29-51 (199)
465 2xtp_A GTPase IMAP family memb 96.5 0.0014 4.7E-08 53.6 3.1 23 53-75 23-45 (260)
466 3a1s_A Iron(II) transport prot 96.5 0.0015 5.1E-08 53.7 3.3 23 54-76 7-29 (258)
467 2ew1_A RAS-related protein RAB 96.5 0.0015 5E-08 51.4 3.2 22 54-75 28-49 (201)
468 1sxj_A Activator 1 95 kDa subu 96.5 0.0031 1.1E-07 57.0 5.6 25 52-76 77-101 (516)
469 3cph_A RAS-related protein SEC 96.5 0.0017 5.7E-08 50.9 3.4 24 52-75 20-43 (213)
470 2o52_A RAS-related protein RAB 96.5 0.0015 5E-08 51.1 3.0 23 53-75 26-48 (200)
471 2h17_A ADP-ribosylation factor 96.5 0.0014 4.7E-08 50.2 2.7 23 53-75 22-44 (181)
472 3tmk_A Thymidylate kinase; pho 96.5 0.0014 4.6E-08 52.7 2.8 29 50-78 3-31 (216)
473 2il1_A RAB12; G-protein, GDP, 96.5 0.0013 4.6E-08 50.9 2.7 22 54-75 28-49 (192)
474 2qu8_A Putative nucleolar GTP- 96.5 0.0015 5.1E-08 52.2 3.0 23 53-75 30-52 (228)
475 2dby_A GTP-binding protein; GD 96.5 0.0015 5E-08 56.7 3.2 23 54-76 3-25 (368)
476 2hf9_A Probable hydrogenase ni 96.5 0.0032 1.1E-07 49.9 4.9 24 53-76 39-62 (226)
477 3c5c_A RAS-like protein 12; GD 96.4 0.0018 6.1E-08 50.0 3.4 22 54-75 23-44 (187)
478 2fv8_A H6, RHO-related GTP-bin 96.4 0.0016 5.5E-08 51.1 3.1 24 52-75 25-48 (207)
479 4bas_A ADP-ribosylation factor 96.4 0.0013 4.4E-08 50.8 2.5 24 52-75 17-40 (199)
480 2fh5_B SR-beta, signal recogni 96.4 0.0019 6.4E-08 50.8 3.5 24 52-75 7-30 (214)
481 2iwr_A Centaurin gamma 1; ANK 96.4 0.0013 4.4E-08 50.0 2.4 22 54-75 9-30 (178)
482 3i8s_A Ferrous iron transport 96.4 0.0016 5.4E-08 54.0 3.1 24 53-76 4-27 (274)
483 1gwn_A RHO-related GTP-binding 96.4 0.0017 5.9E-08 51.1 3.2 23 53-75 29-51 (205)
484 1yrb_A ATP(GTP)binding protein 96.4 0.0038 1.3E-07 50.7 5.3 38 53-91 15-52 (262)
485 1wf3_A GTP-binding protein; GT 96.4 0.0018 6.1E-08 54.6 3.4 22 54-75 9-30 (301)
486 3pih_A Uvrabc system protein A 96.4 0.0013 4.6E-08 63.4 2.9 70 104-185 460-529 (916)
487 3iev_A GTP-binding protein ERA 96.4 0.0019 6.3E-08 54.5 3.4 22 54-75 12-33 (308)
488 2h57_A ADP-ribosylation factor 96.4 0.0012 4.1E-08 50.9 2.0 25 52-76 21-45 (190)
489 2f7s_A C25KG, RAS-related prot 96.4 0.0019 6.6E-08 50.8 3.2 22 54-75 27-48 (217)
490 2q3h_A RAS homolog gene family 96.4 0.002 6.8E-08 50.1 3.2 25 51-75 19-43 (201)
491 1vec_A ATP-dependent RNA helic 96.4 0.0072 2.5E-07 47.1 6.5 47 20-70 11-58 (206)
492 2gco_A H9, RHO-related GTP-bin 96.3 0.002 6.9E-08 50.2 3.2 23 53-75 26-48 (201)
493 2j1l_A RHO-related GTP-binding 96.3 0.0019 6.4E-08 51.1 3.0 22 53-74 35-56 (214)
494 2fu5_C RAS-related protein RAB 96.3 0.0012 4.1E-08 50.4 1.8 22 53-74 9-30 (183)
495 3auy_A DNA double-strand break 96.3 0.0018 6E-08 56.1 3.0 21 54-74 27-47 (371)
496 4dhe_A Probable GTP-binding pr 96.3 0.00088 3E-08 53.0 1.0 24 52-75 29-52 (223)
497 1p5z_B DCK, deoxycytidine kina 96.3 0.0012 4E-08 54.2 1.7 27 50-76 22-48 (263)
498 1t6n_A Probable ATP-dependent 96.3 0.0092 3.2E-07 47.1 7.0 48 20-71 22-70 (220)
499 3llu_A RAS-related GTP-binding 96.3 0.0022 7.5E-08 49.8 3.2 24 52-75 20-43 (196)
500 2ocp_A DGK, deoxyguanosine kin 96.3 0.002 6.8E-08 52.1 3.0 26 52-77 2-27 (241)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2.8e-50 Score=416.34 Aligned_cols=217 Identities=34% Similarity=0.623 Sum_probs=205.1
Q ss_pred CCcCCCCCCcCCCCChhHHHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-
Q psy12735 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL- 79 (233)
Q Consensus 1 ~~~~~Fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~- 79 (233)
||+|+||++++|..+|.+|+++++++|++.+|++++.++.|++|||+++..+|+++||||+||||||++++|++++...
T Consensus 855 li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~ 934 (3245)
T 3vkg_A 855 LLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVD 934 (3245)
T ss_dssp HHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTT
T ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 80 GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
+.+...+.+||++++..++||.++..+++|.||++..++|+++....+...+.+|+|||||.|+.|+|++|++||+++.|
T Consensus 935 ~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~L 1014 (3245)
T 3vkg_A 935 NIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLL 1014 (3245)
T ss_dssp TCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEE
T ss_pred CCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCee
Confidence 44667788999999999999999999999999999999999876433333567899999999999999999999999999
Q ss_pred cccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHHHHhhcc
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVNLNV 217 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~swl~~~~ 217 (233)
+|++||+|.++++++++||++||++|||||||||||||+++.+++|.|++.+|+++++
T Consensus 1015 tL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~ 1072 (3245)
T 3vkg_A 1015 TLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLS 1072 (3245)
T ss_dssp CCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred ecCCCCeeecCCCCEEEEEeccccccChhhheeeeEEEEcccccCchHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1e-44 Score=373.71 Aligned_cols=216 Identities=27% Similarity=0.515 Sum_probs=201.5
Q ss_pred CCcCCCCCCcCCCCChhHHHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-
Q psy12735 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL- 79 (233)
Q Consensus 1 ~~~~~Fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~- 79 (233)
|++|+||++++| .+|.++++++++.+++.++++++.++.|++|||+.+..+++|+|+||+||||||++++|++++...
T Consensus 873 li~dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~ 951 (2695)
T 4akg_A 873 ELSKIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFD 951 (2695)
T ss_dssp HHHHHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999 889999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC-CCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 80 GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS-KERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~-~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+.+.....++|++++..+++|.++..+++|.||++..++|+.+....++. ...+|+|||||.|+.|+|++|++||+++.
T Consensus 952 ~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~ 1031 (2695)
T 4akg_A 952 GHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKI 1031 (2695)
T ss_dssp CCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCE
T ss_pred CCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCc
Confidence 45567788999999999999999999999999999999999886543222 24789999999999999999999999999
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHHHHhhcc
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVNLNV 217 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~swl~~~~ 217 (233)
|++++||+|.++++++++||++||++|||||||||||||+++.+++|+|++++|+++++
T Consensus 1032 L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmvy~~~~~l~~~~~~~~wl~~~~ 1090 (2695)
T 4akg_A 1032 LTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSY 1090 (2695)
T ss_dssp EECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEEECCSCSSCHHHHHHHHHHHHH
T ss_pred cccCCCCEEecCCCcEEEEEecccccCCccceeeeeEEEecCCcCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999774
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.77 E-value=1.2e-19 Score=149.70 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=84.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc-------cccccc---------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI-------ELYGVL--------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~-------~l~g~~--------------------- 102 (233)
.|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+....+.. ..+|++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~ 109 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence 3445999999999999999999999988777766543221110000 001111
Q ss_pred ------------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 103 ------------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 103 ------------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
+.....+|+|..+++ .+|++.. .+|++++||||++++|+.....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv--~iAral~---~~p~llllDEPts~LD~~~~~~i 184 (235)
T 3tif_A 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV--AIARALA---NNPPIILADQPTWALDSKTGEKI 184 (235)
T ss_dssp TCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTSCHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHH
Confidence 222346677777777 5555554 68999999999999999999888
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
++..+.+....| ..+++.|||+..+
T Consensus 185 ~~~l~~l~~~~g--------~tvi~vtHd~~~~ 209 (235)
T 3tif_A 185 MQLLKKLNEEDG--------KTVVVVTHDINVA 209 (235)
T ss_dssp HHHHHHHHHHHC--------CEEEEECSCHHHH
T ss_pred HHHHHHHHHHcC--------CEEEEEcCCHHHH
Confidence 877665543323 6888889998744
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.77 E-value=2e-19 Score=156.67 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=90.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------cccccccc--------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------IELYGVLN-------------------- 103 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~~l~g~~~-------------------- 103 (233)
.+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+....+. ...+|++.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 3444599999999999999999999998888777665433211110 01122222
Q ss_pred ---------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 104 ---------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 104 ---------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+..+|+|+.+++ .+|++.. .+|++++||||++++|+.....+++..
T Consensus 132 ~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRV--aIArAL~---~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV--AIARALA---SNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHH--HHHHHTT---TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 22346677888888 6666665 699999999999999999999988877
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
+.+....| +++++.|||+..+..
T Consensus 207 ~~l~~~~g--------~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 207 KDINRRLG--------LTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHSC--------CEEEEEESCHHHHHH
T ss_pred HHHHHhCC--------CEEEEEecCHHHHHH
Confidence 66654434 788888999887643
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.75 E-value=6.9e-19 Score=144.11 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=83.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc------c-cccccccCC------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV------I-ELYGVLNPE------------------ 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~------~-~l~g~~~~~------------------ 105 (233)
+|+.++|+||||||||||+|+++|++.+..|.+.+.+.+....+. . ..+|++.|.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 344599999999999999999999998887777664433211110 0 112333322
Q ss_pred -----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 106 -----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 106 -----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+.....+++..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~laral~---~~p~lllLDEPt~~LD~~~~~~~~~~l 183 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRV--AIARALA---NEPILLFADEPTGNLDSANTKRVMDIF 183 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH--HHHHHTT---TCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 224555666666 4555444 689999999999999999998888766
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+... | ..+++.+||+..+
T Consensus 184 ~~l~~~-g--------~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 184 LKINEG-G--------TSIVMVTHERELA 203 (224)
T ss_dssp HHHHHT-T--------CEEEEECSCHHHH
T ss_pred HHHHHC-C--------CEEEEEcCCHHHH
Confidence 554333 3 6788888887765
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.74 E-value=2.8e-19 Score=150.10 Aligned_cols=137 Identities=17% Similarity=0.182 Sum_probs=94.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc------------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV------------ 93 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~------------ 93 (233)
++++++|.+.++. .++|+||||||||||+|+|+|++.+..|.+.+.+.+....
T Consensus 26 vL~~vsl~i~~Ge---------------~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 26 LINDVSLHIASGE---------------MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEETTC---------------EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeEEEEcCCC---------------EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 4556666665555 5999999999999999999999998888877644322110
Q ss_pred ----------cccc-----------------------cccc---ccCCCCcCchhHHHHHHHHHhcCCCC---CCCCceE
Q psy12735 94 ----------SVIE-----------------------LYGV---LNPETRDWYDGLLSNIFRAVNKPLDP---GSKERKY 134 (233)
Q Consensus 94 ----------~~~~-----------------------l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~---~~~~~~~ 134 (233)
+..+ .+|. .+.....+|+|..+++ .++++... ...+|++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv--~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRV--QLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHH--HHHHHHHHTCCSSCCCEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHhcccccCCCCCE
Confidence 0000 0111 1222346788999988 55554430 0128999
Q ss_pred EEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 135 ILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 135 lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++||||++++|+.....+++..+.+...++ ..+++.+||+..+..
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~--------~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEP--------LAVCCVLHDLNLAAL 213 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSS--------EEEEEECSCHHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCC--------CEEEEEEcCHHHHHH
Confidence 999999999999999888887666544444 688888899887653
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.74 E-value=9.8e-19 Score=147.35 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=93.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc--cc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK--AV---SVIELYG 100 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~--~~---~~~~l~g 100 (233)
++++++|.+.++. .++|+||||||||||+|+|+|++.+..|.+.+.+.+.. .. ...+.+|
T Consensus 23 ~L~~isl~i~~Ge---------------~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 23 ALKGINMNIKRGE---------------VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEEEETTS---------------EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 4556667665555 49999999999999999999999888877766543321 00 0011123
Q ss_pred cccC------------------------------------------------CCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 101 VLNP------------------------------------------------ETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 101 ~~~~------------------------------------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
++.| ....+|+|..+++ .+|++.. .+|
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv--~iAraL~---~~P 162 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV--AIAGVLV---MEP 162 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHT---TCC
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH--HHHHHHH---cCC
Confidence 3322 2234566777776 5555544 689
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
++++||||++++|+.....+++..+.+....| .++++.+||+..+..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g--------~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELG--------ITIIIATHDIDIVPL 209 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC--------CEEEEEESCCSSGGG
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCC--------CEEEEEecCHHHHHH
Confidence 99999999999999999888877665532224 688899999988764
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.73 E-value=1.3e-18 Score=151.42 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=85.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC----ccc-ccccccccc-----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP----KAV-SVIELYGVL----------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~----~~~-~~~~l~g~~----------------------- 102 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+. ... ...+-+|++
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 3445999999999999999999999988877776543221 000 000112222
Q ss_pred ------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 103 ------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 103 ------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+..+..+|+|+.+++ .++++.. .+|++++||||++++|+.....+++....
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV--alArAL~---~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA--ALARALA---PDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 223346677888888 6666555 69999999999999999998888765544
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+....| .++++.|||+..+.
T Consensus 184 ~~~~~g--------~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 184 ALRANG--------KSAVFVSHDREEAL 203 (359)
T ss_dssp HHHHTT--------CEEEEECCCHHHHH
T ss_pred HHHhCC--------CEEEEEeCCHHHHH
Confidence 433334 68888888888764
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.73 E-value=7.6e-19 Score=153.81 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=86.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc-ccccccc---------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV-IELYGVL--------------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~-~~l~g~~--------------------------- 102 (233)
.|+.++|+||||||||||+|+|+|++.+.+|.+.+.+.+...... ..-+|++
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 344599999999999999999999998888877664432211100 0112222
Q ss_pred --------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 103 --------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 103 --------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
+..+..+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..+.+...
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV--aiArAL~---~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV--AIGRTLV---AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH--HHHHHHH---HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH--HHHHHHH---cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence 223346677777777 5555443 589999999999999999988888776665544
Q ss_pred CceEEEccCcceEEEEeCCcCccC
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.| ..+|+.|||+..+.
T Consensus 183 ~g--------~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 183 LG--------RTMIYVTHDQVEAM 198 (381)
T ss_dssp HC--------CEEEEECSCHHHHH
T ss_pred CC--------CEEEEEECCHHHHH
Confidence 34 67888888887663
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=2e-18 Score=142.75 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=82.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc----cccccccc-----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV----IELYGVLN----------------------- 103 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~----~~l~g~~~----------------------- 103 (233)
+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+....+. ..-+|++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 344599999999999999999999998777766554322111000 00012221
Q ss_pred ------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccc
Q psy12735 104 ------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKIL 159 (233)
Q Consensus 104 ------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l 159 (233)
......|+|..+++ .++++.. .+|++++||||++++|+.....+++..+.+
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML--AIGRALM---SRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHH--HHHHHHT---TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 22334566666666 4444443 589999999999999999998888766554
Q ss_pred cccCceEEEccCcceEEEEeCCcCccC
Q psy12735 160 TLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 160 ~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.- .| ..+++.+||+..+.
T Consensus 186 ~~-~g--------~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 186 NQ-EG--------TTILLVEQNALGAL 203 (240)
T ss_dssp HH-TT--------CCEEEEESCHHHHH
T ss_pred HH-CC--------CEEEEEecCHHHHH
Confidence 32 23 67888899987653
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.70 E-value=3.6e-18 Score=148.79 Aligned_cols=123 Identities=18% Similarity=0.174 Sum_probs=85.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-ccccccc----------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGV---------------------------- 101 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~---------------------------- 101 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+..... ..+-+|+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 34459999999999999999999999887777665432211000 0001111
Q ss_pred -------------------ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 102 -------------------LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 102 -------------------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
.+.....+|+|+.+++ .++++.. .+|++++||||++++|+.....+.+..+.+...
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv--alArAL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV--ALARALV---KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 1223346777888887 6666554 699999999999999999988888776655433
Q ss_pred CceEEEccCcceEEEEeCCcCccC
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.| ..+++.|||+..+.
T Consensus 183 ~g--------~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 183 LG--------ITSVYVTHDQAEAM 198 (359)
T ss_dssp HC--------CEEEEEESCHHHHH
T ss_pred cC--------CEEEEEcCCHHHHH
Confidence 23 67888888887653
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.70 E-value=3.1e-18 Score=148.91 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-ccccccc---
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGV--- 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~--- 101 (233)
++++++|.+.++. .++|+||||||||||+|+|+|+..+..|.+.+.+.+..... ..+-+|+
T Consensus 30 vl~~vsl~i~~Ge---------------~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 30 SVRGVSFQIREGE---------------MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp CEEEEEEEEETTC---------------EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEeeeEEEECCCC---------------EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 4556667765555 49999999999999999999999887777765432211000 0001111
Q ss_pred --------------------------------------------ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEE
Q psy12735 102 --------------------------------------------LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILF 137 (233)
Q Consensus 102 --------------------------------------------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvl 137 (233)
.+.....+|+|+.+++ .++++.. .+|++++|
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv--alArAL~---~~P~lLLL 169 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV--ALARALA---PRPQVLLF 169 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHT---TCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH--HHHHHHH---cCCCEEEE
Confidence 1223346777888887 5655554 68999999
Q ss_pred eCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 138 DGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 138 Dep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
|||++++|+.....+.+..+.+....| ..+++.|||+..+
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~l~~~~g--------~tvi~vTHd~~~a 209 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQVHDEMG--------VTSVFVTHDQEEA 209 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHHHHHHHT--------CEEEEECSCHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcC--------CEEEEECCCHHHH
Confidence 999999999998888877665543323 5778888887765
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.70 E-value=1.3e-17 Score=138.51 Aligned_cols=121 Identities=18% Similarity=0.198 Sum_probs=83.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCC----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPE---------------------- 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~---------------------- 105 (233)
+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+....+ ..+.+|++.|.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 113 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 113 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHH
Confidence 34459999999999999999999999888777766543321110 00112222221
Q ss_pred -----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 106 -----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 106 -----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
...+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv--~iAraL~---~~p~lllLDEPts~LD~~~~~~i~~~l 188 (247)
T 2ff7_A 114 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI--AIARALV---NNPKILIFDEATSALDYESEHVIMRNM 188 (247)
T ss_dssp HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH--HHHHHHT---TCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 135666777776 5555444 589999999999999999998888766
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.+. .| ..+++.+||+..+.
T Consensus 189 ~~~~--~g--------~tviivtH~~~~~~ 208 (247)
T 2ff7_A 189 HKIC--KG--------RTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHH--TT--------SEEEEECSSGGGGT
T ss_pred HHHc--CC--------CEEEEEeCCHHHHH
Confidence 5542 23 67888899988764
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.70 E-value=1.1e-17 Score=140.68 Aligned_cols=133 Identities=19% Similarity=0.145 Sum_probs=90.5
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+.++. .++|+||||||||||+|+|+|++.+..|.+.+.+.+....+. .+.+|++
T Consensus 34 vl~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 98 (271)
T 2ixe_A 34 VLQGLTFTLYPGK---------------VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98 (271)
T ss_dssp CEEEEEEEECTTC---------------EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred eeEeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence 4556667665555 499999999999999999999998877776654322111000 0011111
Q ss_pred c----------------------------------------------------CCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 103 N----------------------------------------------------PETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 103 ~----------------------------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
. .....+|+|..+++ .++++.. .
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv--~lAraL~---~ 173 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV--ALARALI---R 173 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH--HHHHHHT---T
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH--HHHHHHh---c
Confidence 1 12245667777777 5555544 5
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+|++++||||++++|+.....+++..+.+....| ..+|+.+||+..+.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g--------~tviivtHd~~~~~ 221 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWAS--------RTVLLITQQLSLAE 221 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTT--------SEEEEECSCHHHHT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcC--------CEEEEEeCCHHHHH
Confidence 8999999999999999999888876655432223 67888899987664
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.70 E-value=2.1e-18 Score=144.47 Aligned_cols=123 Identities=23% Similarity=0.274 Sum_probs=83.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc--cc---ccccccccccCCC------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK--AV---SVIELYGVLNPET------------------ 106 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~--~~---~~~~l~g~~~~~~------------------ 106 (233)
.+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+.. .. ...+.+|++.|..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~ 127 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK 127 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 344559999999999999999999999888777766543321 00 0011133333322
Q ss_pred ------------------------------CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 107 ------------------------------RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 107 ------------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
..+|+|..+++ .++++.. .+|++++||||++++|+.....+++..
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV--AIARALA---MEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH--HHHHHHH---CCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 23455555555 4444333 589999999999999999998888776
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.+... | ..+++.+||+..+.
T Consensus 203 ~~l~~~-g--------~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 203 KQLANE-G--------MTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHT-T--------CEEEEECSCHHHHH
T ss_pred HHHHhC-C--------CEEEEEcCCHHHHH
Confidence 555332 3 67888889887654
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.70 E-value=4.3e-18 Score=140.81 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=82.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccC---------------------------
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNP--------------------------- 104 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~--------------------------- 104 (233)
+.++|+||||||||||+|+|+|++.+..|.+.+.+.+..... ....+|++.|
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 104 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence 349999999999999999999999888777766443221000 0011222222
Q ss_pred ------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceE
Q psy12735 105 ------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 166 (233)
Q Consensus 105 ------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~ 166 (233)
....+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..+.+....|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv--~lAral~---~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g-- 177 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRV--ALARALV---IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-- 177 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH--HHHHHHT---TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC--
Confidence 2234566777776 5555444 58999999999999999999888876655433223
Q ss_pred EEccCcceEEEEeCCcCccC
Q psy12735 167 IRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 167 i~~~~~~~~i~et~dl~~~s 186 (233)
..+++.+||+..+.
T Consensus 178 ------~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 178 ------VPILHVTHDLIEAA 191 (240)
T ss_dssp ------CCEEEEESCHHHHH
T ss_pred ------CEEEEEeCCHHHHH
Confidence 67888888887653
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.69 E-value=3.8e-18 Score=148.73 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=83.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-ccccccccc--------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLN-------------------------- 103 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~-------------------------- 103 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+..... ..+-+|++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 34459999999999999999999999888777766443221100 001122222
Q ss_pred ---------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 104 ---------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 104 ---------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
......|+|..+++ .++++.. .+|++++||||++++|+.....+.+..+.+...
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV--AIARALV---KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 22345666777777 5555554 589999999999999999998888776665433
Q ss_pred CceEEEccCcceEEEEeCCcCcc
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.| ..+++.|||+..+
T Consensus 183 ~g--------~tvi~vTHd~~~a 197 (362)
T 2it1_A 183 LG--------ITTVYVTHDQAEA 197 (362)
T ss_dssp HT--------CEEEEEESCHHHH
T ss_pred CC--------CEEEEECCCHHHH
Confidence 23 5777778887665
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.69 E-value=3.5e-18 Score=148.65 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=84.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc-----c-ccccccccc----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA-----V-SVIELYGVL---------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~-----~-~~~~l~g~~---------------------- 102 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+... . ...+-+|++
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 344599999999999999999999998877776553321100 0 000111111
Q ss_pred -------------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 103 -------------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 103 -------------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
+.....+|+|..+++ .++++.. .+|++++||||++++|+.....+.+..+
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv--alAraL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 184 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV--ALARALV---KDPSLLLLDEPFSNLDARMRDSARALVK 184 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 222345677877777 5555554 6999999999999999999988887766
Q ss_pred cccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+....| ..+++.|||+..+.
T Consensus 185 ~l~~~~g--------~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 185 EVQSRLG--------VTLLVVSHDPADIF 205 (353)
T ss_dssp HHHHHHC--------CEEEEEESCHHHHH
T ss_pred HHHHhcC--------CEEEEEeCCHHHHH
Confidence 5543323 67888888887653
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.69 E-value=5.1e-18 Score=148.47 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=83.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccc---------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVL--------------------------- 102 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~--------------------------- 102 (233)
.|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+..... ..+-+|++
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 34459999999999999999999999887777665432211100 00112222
Q ss_pred --------------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcccccccc
Q psy12735 103 --------------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLA 162 (233)
Q Consensus 103 --------------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~ 162 (233)
+.....+|+|..+++ .++++.. .+|++++||||++++|+.....+.+..+.+...
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV--AVARAIV---VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH--HHHHHHT---TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 222345566666666 5555444 589999999999999999998888776655433
Q ss_pred CceEEEccCcceEEEEeCCcCcc
Q psy12735 163 NGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 163 ~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.| ..+|+.|||+..+
T Consensus 191 ~g--------~tvi~vTHd~~~a 205 (372)
T 1v43_A 191 LK--------VTTIYVTHDQVEA 205 (372)
T ss_dssp HT--------CEEEEEESCHHHH
T ss_pred CC--------CEEEEEeCCHHHH
Confidence 23 5777788887765
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.69 E-value=6.1e-18 Score=146.82 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=86.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--------------------ccc---------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--------------------VSV--------------- 95 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--------------------~~~--------------- 95 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+... ++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 445599999999999999999999998887777654322100 000
Q ss_pred ----c---cccc---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCce
Q psy12735 96 ----I---ELYG---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGE 165 (233)
Q Consensus 96 ----~---~l~g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~ 165 (233)
. +.+| +.+......|+|+.+++ .++++.. .+|++++||||++++|+.....+.+..+.+....|
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv--alAraL~---~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g- 178 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRV--ALARALV---TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK- 178 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH--HHHHHTT---SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-
Confidence 0 0011 12223456778888888 6666665 69999999999999999999888877666543333
Q ss_pred EEEccCcceEEEEeCCcCcc
Q psy12735 166 RIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 166 ~i~~~~~~~~i~et~dl~~~ 185 (233)
..+++.|||+..+
T Consensus 179 -------~tii~vTHd~~~~ 191 (348)
T 3d31_A 179 -------LTVLHITHDQTEA 191 (348)
T ss_dssp -------CEEEEEESCHHHH
T ss_pred -------CEEEEEeCCHHHH
Confidence 6778888887765
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.69 E-value=6.4e-18 Score=147.96 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc------cc-cccccccccCC------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA------VS-VIELYGVLNPE------------------ 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~------~~-~~~l~g~~~~~------------------ 105 (233)
.|+.++|+||||||||||+|+|+|+..+..|.+.+.+.+... .. ..+-+|++.|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 444599999999999999999999998887777654322110 00 01112332222
Q ss_pred -----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 106 -----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 106 -----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
...+|+|..+++ .++++.. .+|++++||||++++|+.....+.+..
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv--alArAL~---~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV--ALGRAIV---RKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHH--HHHHHHH---TCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 234566666666 4444443 589999999999999999988888776
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.+....| ..+|+.|||+..+
T Consensus 183 ~~l~~~~g--------~tvi~vTHd~~~a 203 (372)
T 1g29_1 183 KKLQRQLG--------VTTIYVTHDQVEA 203 (372)
T ss_dssp HHHHHHHT--------CEEEEEESCHHHH
T ss_pred HHHHHhcC--------CEEEEECCCHHHH
Confidence 65543323 5677777777655
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.69 E-value=3.1e-18 Score=142.91 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=83.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc--ccccccccccC------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV--SVIELYGVLNP------------------------ 104 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~--~~~~l~g~~~~------------------------ 104 (233)
+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+.... ...+.+|++.|
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 3445999999999999999999999988777776644321100 00111222222
Q ss_pred -----------------------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 105 -----------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 105 -----------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
....+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..+.+.-
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL--LIARALM---VNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence 2234566666666 4444444 58999999999999999999888876655432
Q ss_pred cCceEEEccCcceEEEEeCCcCccCh
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
.| ..+++.+||+..+..
T Consensus 195 -~g--------~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 195 -EG--------LTILVSSHNMLEVEF 211 (256)
T ss_dssp -TT--------CEEEEEECCHHHHTT
T ss_pred -CC--------CEEEEEcCCHHHHHH
Confidence 23 678888999876643
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.68 E-value=4.9e-18 Score=138.10 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=84.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc-----------------ccccc-----------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK-----------------AVSVI----------------- 96 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~-----------------~~~~~----------------- 96 (233)
+|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+.. ..+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 34449999999999999999999999887777655432110 00000
Q ss_pred ---c---ccccc--cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEE
Q psy12735 97 ---E---LYGVL--NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIR 168 (233)
Q Consensus 97 ---~---l~g~~--~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~ 168 (233)
+ .+|.- +.....+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..+.+... |
T Consensus 114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv--~laraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g---- 183 (214)
T 1sgw_A 114 EIMDALESVEVLDLKKKLGELSQGTIRRV--QLASTLL---VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-K---- 183 (214)
T ss_dssp HHHHHHHHTTCCCTTSBGGGSCHHHHHHH--HHHHHTT---SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-H----
T ss_pred HHHHHHHHcCCCcCCCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-C----
Confidence 0 01111 222345777888888 6666555 689999999999999999988887765544322 3
Q ss_pred ccCcceEEEEeCCcCccCh
Q psy12735 169 LLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~sP 187 (233)
..+++.+||+..+..
T Consensus 184 ----~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 184 ----GIVIISSREELSYCD 198 (214)
T ss_dssp ----SEEEEEESSCCTTSS
T ss_pred ----CEEEEEeCCHHHHHH
Confidence 577888888877654
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.68 E-value=7.6e-18 Score=143.83 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=86.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcC----------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDW---------------- 109 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~---------------- 109 (233)
+..|+.++|+||||||||||+++|+|++.+..|.+.+.+.+....+. .+.+|++.|.+..|
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~ 156 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG 156 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC
Confidence 35566799999999999999999999999988888876655443322 22345555554444
Q ss_pred -----------------------------------chhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 110 -----------------------------------YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 110 -----------------------------------~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
++|..+++ .+|++.. .+|++++||||++++|+++...+++
T Consensus 157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv--aiARAL~---~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV--AIARTIL---KAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH--HHHHHHH---HCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH--HHHHHHH---hCCCEEEEECCcccCCHHHHHHHHH
Confidence 44444444 3333222 4899999999999999999888877
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
..+.+. . +.++|+.+|+++.+..
T Consensus 232 ~l~~l~--~--------~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 232 SLAKVC--A--------NRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HHHHHH--T--------TSEEEEECCSHHHHHT
T ss_pred HHHHHc--C--------CCEEEEEEcChHHHHc
Confidence 654432 1 2577888888876643
No 25
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.68 E-value=4.5e-18 Score=142.45 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=81.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc----------c------ccccccccccCC---------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA----------V------SVIELYGVLNPE--------- 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~----------~------~~~~l~g~~~~~--------- 105 (233)
.|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+... . .....+|++.|.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 110 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 110 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcH
Confidence 344599999999999999999999998877777664432210 0 001123333332
Q ss_pred ----------------------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh
Q psy12735 106 ----------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 106 ----------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
...+|+|..+++ .++++.. .+|++++||||++++|
T Consensus 111 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv--~lAraL~---~~p~lllLDEPts~LD 185 (262)
T 1b0u_A 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV--SIARALA---MEPDVLLFDEPTSALD 185 (262)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH--HHHHHHH---TCCSEEEEESTTTTSC
T ss_pred HHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEeCCCccCC
Confidence 223444555555 3333332 4899999999999999
Q ss_pred HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 146 IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 146 ~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.....+++..+.+.-. | ..+++.+||+..+.
T Consensus 186 ~~~~~~~~~~l~~l~~~-g--------~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 186 PELVGEVLRIMQQLAEE-G--------KTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHHHHHHHHHHHHT-T--------CCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-C--------CEEEEEeCCHHHHH
Confidence 99998888776655332 3 67888888887654
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.67 E-value=2.6e-17 Score=136.90 Aligned_cols=122 Identities=16% Similarity=0.061 Sum_probs=77.5
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCccccc----ccccccccC--------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVSV----IELYGVLNP-------------------- 104 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~~----~~l~g~~~~-------------------- 104 (233)
+|+.++|+||||||||||+|+|+|+ +.+..|.+.+.+.+....+. ...++++.|
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 107 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA 107 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHh
Confidence 3445999999999999999999998 66666666554322111000 000111111
Q ss_pred -------------------------------CCCc-CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 105 -------------------------------ETRD-WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 105 -------------------------------~~~~-~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.... +|+|..+++ .++++.. .+|++++||||++++|+.....+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv--~iAraL~---~~p~lllLDEPts~LD~~~~~~l 182 (250)
T 2d2e_A 108 KLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN--EILQLLV---LEPTYAVLDETDSGLDIDALKVV 182 (250)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH--HHHHHHH---HCCSEEEEECGGGTTCHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH--HHHHHHH---cCCCEEEEeCCCcCCCHHHHHHH
Confidence 1234 666666666 4444333 48999999999999999999888
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
++..+.+.. .| ..+++.+||+..+.
T Consensus 183 ~~~l~~l~~-~g--------~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 183 ARGVNAMRG-PN--------FGALVITHYQRILN 207 (250)
T ss_dssp HHHHHHHCS-TT--------CEEEEECSSSGGGG
T ss_pred HHHHHHHHh-cC--------CEEEEEecCHHHHH
Confidence 876655432 23 67888899987664
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.66 E-value=3.7e-17 Score=137.15 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=83.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc--------------------cccc--------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA--------------------VSVI-------------- 96 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~--------------------~~~~-------------- 96 (233)
.|+.++|+||||||||||+|+|+|++.+..|.+.+.+.+... .+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 344599999999999999999999998777766553321100 0000
Q ss_pred ----------cccccc-----cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccc
Q psy12735 97 ----------ELYGVL-----NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTL 161 (233)
Q Consensus 97 ----------~l~g~~-----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l 161 (233)
+.+|.. +.....+|+|..+++ .++++.. .+|++++||||++++|+.....+++..+.+..
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIV---HEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH--HHHHHHT---TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 001111 122345677777777 5555554 68999999999999999999888877655433
Q ss_pred cCceEEEccCcceEEEEeCCcCccC
Q psy12735 162 ANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 162 ~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
. | ..+++.+||+..+.
T Consensus 187 ~-g--------~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 187 L-G--------KTVILISHDIETVI 202 (266)
T ss_dssp T-T--------CEEEEECSCCTTTG
T ss_pred c-C--------CEEEEEeCCHHHHH
Confidence 3 3 57788888887664
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.66 E-value=7e-18 Score=140.21 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccC-----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNP----------------------- 104 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~----------------------- 104 (233)
.|+.++|+||||||||||+|+|+|.+.+. |.+.+.+.+....+ ..+.+|++.|
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence 44559999999999999999999999888 87766443221100 0011222222
Q ss_pred -------------------CCCcCchhHHHHHHHHHhcCCCCCCCCce-------EEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 105 -------------------ETRDWYDGLLSNIFRAVNKPLDPGSKERK-------YILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 105 -------------------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-------~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
....+|+|..+++ .++++.. .+|+ +++||||++++|+.....+++..+.
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~---~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRV--RLAAVVL---QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHH--HHHHHHH---HHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHH---cCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2234566777766 4443332 3677 9999999999999999888876655
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+... | ..+++.+||+..+.
T Consensus 179 l~~~-g--------~tviivtHd~~~~~ 197 (249)
T 2qi9_C 179 LSQQ-G--------LAIVMSSHDLNHTL 197 (249)
T ss_dssp HHHT-T--------CEEEEECSCHHHHH
T ss_pred HHhC-C--------CEEEEEeCCHHHHH
Confidence 4322 3 57788888887653
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=133.05 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=94.9
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCc--------
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPK-------- 91 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~-------- 91 (233)
++++++|.+.++. .++|+||||||||||+|+|+|++.+..|.+.+.+ .++.
T Consensus 20 vl~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~e 84 (237)
T 2cbz_A 20 TLNGITFSIPEGA---------------LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRE 84 (237)
T ss_dssp SEEEEEEEECTTC---------------EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHH
T ss_pred eeeeeEEEECCCC---------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHH
Confidence 3555666665554 5999999999999999999999988777765422 1110
Q ss_pred ------ccc---cc---c---c---ccc--------ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh
Q psy12735 92 ------AVS---VI---E---L---YGV--------LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 92 ------~~~---~~---~---l---~g~--------~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
... .. + + ++. .+.....+|+|+.+++ .++++.. .+|++++||||++++|
T Consensus 85 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv--~lAraL~---~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV--SLARAVY---SNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH--HHHHHHH---HCCSEEEEESTTTTSC
T ss_pred HhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEeCcccccC
Confidence 000 00 0 0 110 1223467899999999 5555554 5899999999999999
Q ss_pred HHhHHHHhhccccc-cccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 146 IENMNSVMDDNKIL-TLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 146 ~~~l~~~l~~~~~l-~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
+.....+++..... .+..| ..+++.+||+..+. ...| ++.++...
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~--------~tviivtH~~~~~~--~~d~--v~~l~~G~ 205 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGMLKN--------KTRILVTHSMSYLP--QVDV--IIVMSGGK 205 (237)
T ss_dssp HHHHHHHHHHTTSTTSTTTT--------SEEEEECSCSTTGG--GSSE--EEEEETTE
T ss_pred HHHHHHHHHHHHHHHhhcCC--------CEEEEEecChHHHH--hCCE--EEEEeCCE
Confidence 99988887765311 11123 68888899988763 2333 44455433
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.65 E-value=2.3e-17 Score=137.70 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=89.7
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGV 101 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~ 101 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|.+.+..|.+.+.+.+....+ ....+|+
T Consensus 22 vl~~vsl~i~~Ge~---------------~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 22 ALDGVSISVNKGDV---------------TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEECCEEETTCE---------------EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred eEeeeEEEEeCCCE---------------EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 45667777766554 9999999999999999999999887777665443221100 0001122
Q ss_pred ccC------------------------------------------------------------CCCcCchhHHHHHHHHH
Q psy12735 102 LNP------------------------------------------------------------ETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 102 ~~~------------------------------------------------------------~~~~~~~gi~~~~~~~~ 121 (233)
+.| ....+|+|+.+++ .+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv--~i 164 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV--EI 164 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH--HH
Confidence 111 1224555666666 44
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccCh
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sP 187 (233)
+++.. .+|++++||||++++|+.....+++..+.+... | ..+++.+||+..+..
T Consensus 165 AraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g--------~tvi~vtHd~~~~~~ 218 (257)
T 1g6h_A 165 GRALM---TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-G--------ITFLIIEHRLDIVLN 218 (257)
T ss_dssp HHHHH---TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECSCCSTTGG
T ss_pred HHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEecCHHHHHH
Confidence 44333 589999999999999999998888776655322 4 688888999887743
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.65 E-value=5.9e-17 Score=134.95 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=84.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE------eeeCCc---ccccc-------------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART------YTLNPK---AVSVI------------------------- 96 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~------~~~~~~---~~~~~------------------------- 96 (233)
+|+.++|+||||||||||+|+|+|.+.+..|.+.. ...++. ..+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 44459999999999999999999999887776532 101110 00000
Q ss_pred -c---cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEc
Q psy12735 97 -E---LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRL 169 (233)
Q Consensus 97 -~---l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~ 169 (233)
+ .+|. .+.....+|+|..+++ .++++.. .+|++++||||++++|+.....+++..+.+....|
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv--~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g----- 179 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLI--LIARAIA---SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN----- 179 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHH---TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-----
Confidence 0 0121 1223456788999998 5555554 58999999999999999999888876655433323
Q ss_pred cCcceEEEEeCCcCccC
Q psy12735 170 LAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 170 ~~~~~~i~et~dl~~~s 186 (233)
..+++.+||+..+.
T Consensus 180 ---~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 180 ---MTVVFTTHQPNQVV 193 (253)
T ss_dssp ---CEEEEEESCHHHHH
T ss_pred ---CEEEEEecCHHHHH
Confidence 67888899987764
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.65 E-value=3.8e-17 Score=135.28 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=88.2
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+|+|+|++.+..|.+.+.+.+....+ ..+.+|++
T Consensus 17 vl~~vsl~i~~Ge~---------------~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 17 ILRDISFEAQPNSI---------------IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp SEEEEEEEECTTEE---------------EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred eEEEeEEEEcCCCE---------------EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 35566677665554 9999999999999999999999888888876543321110 01112222
Q ss_pred cCC----------------------------------------------------CCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 103 NPE----------------------------------------------------TRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 103 ~~~----------------------------------------------------~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
.|. ...+|+|..+++ .++++.. .
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv--~lAral~---~ 156 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL--AIARAFL---R 156 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH--HHHHHHH---H
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH--HHHHHHh---c
Confidence 221 124666777766 4444433 4
Q ss_pred CceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 131 ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+|++++||||++++|+.....+++..+.+. . | ..+++.+||+..+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~--------~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM-K-G--------RTTLVIAHRLSTI 201 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-T--------SEEEEECCSHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-C--------CEEEEEeCChHHH
Confidence 899999999999999998877776655443 2 3 6788889998765
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.64 E-value=9.5e-18 Score=141.64 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=81.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc--ccc---ccccccccc----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK--AVS---VIELYGVLN---------------------- 103 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~--~~~---~~~l~g~~~---------------------- 103 (233)
+|+.++|+||||||||||+|+|+|.+.+..|.+.+.+.+.. ..+ ....+|++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~ 125 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF 125 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhh
Confidence 34459999999999999999999999887777665443221 000 001111111
Q ss_pred -------------------------------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 104 -------------------------------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 104 -------------------------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.....+|+|..+++ .++++.. .+|++++||||++++|+.....+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv--~lAraL~---~~p~lLlLDEPts~LD~~~~~~l 200 (279)
T 2ihy_A 126 KSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV--MIARALM---GQPQVLILDEPAAGLDFIARESL 200 (279)
T ss_dssp --------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH--HHHHHHH---TCCSEEEEESTTTTCCHHHHHHH
T ss_pred hccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH--HHHHHHh---CCCCEEEEeCCccccCHHHHHHH
Confidence 11234556666666 4444433 58999999999999999999888
Q ss_pred hhccccccccCceEEEccCcceE--EEEeCCcCccCh
Q psy12735 153 MDDNKILTLANGERIRLLAHCQL--LFEVGDLQYASP 187 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~--i~et~dl~~~sP 187 (233)
++..+.+.-. | ..+ ++.+||+..+..
T Consensus 201 ~~~l~~l~~~-g--------~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 201 LSILDSLSDS-Y--------PTLAMIYVTHFIEEITA 228 (279)
T ss_dssp HHHHHHHHHH-C--------TTCEEEEEESCGGGCCT
T ss_pred HHHHHHHHHC-C--------CEEEEEEEecCHHHHHH
Confidence 8766554322 3 566 888999887644
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.64 E-value=1.2e-16 Score=133.51 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=80.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCC----------------------
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPE---------------------- 105 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~---------------------- 105 (233)
+|+.++|+||||||||||+|+|+|++.+ .|.+.+.+.+....+ ..+.+|++.|.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 123 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE 123 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHH
Confidence 4445999999999999999999999875 566655433221110 01112222222
Q ss_pred -----------------------------CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhcc
Q psy12735 106 -----------------------------TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156 (233)
Q Consensus 106 -----------------------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~ 156 (233)
...+|+|+.+++ .++++.. .+|++++||||++++|+.....+++..
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~i~~~l 198 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI--AIARCLL---KDPKIVIFDEATSSLDSKTEYLFQKAV 198 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH--HHHHHHH---HCCSEEEEECCCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH--HHHHHHH---cCCCEEEEECccccCCHHHHHHHHHHH
Confidence 235566666666 4444333 489999999999999999988887765
Q ss_pred ccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.+. .+ ..+++.+||+..+.
T Consensus 199 ~~l~--~~--------~tviivtH~~~~~~ 218 (260)
T 2ghi_A 199 EDLR--KN--------RTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHT--TT--------SEEEEECSSGGGST
T ss_pred HHhc--CC--------CEEEEEcCCHHHHH
Confidence 5442 12 57888899988764
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.64 E-value=1.3e-16 Score=133.96 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=80.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhh--hhhcCCCeEEeeeCCccccc--------------------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKT--STVLGYPARTYTLNPKAVSV-------------------------------- 95 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~--~~~~~~~i~~~~~~~~~~~~-------------------------------- 95 (233)
.+|+.++|+||||||||||+|+|+|+ +.+..|.+.+.+.+....+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~ 123 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALN 123 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHH
Confidence 34455999999999999999999998 34555555443221100000
Q ss_pred --------------------ccc---cccc----cCCCC-cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH
Q psy12735 96 --------------------IEL---YGVL----NPETR-DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE 147 (233)
Q Consensus 96 --------------------~~l---~g~~----~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~ 147 (233)
.++ +|.. +.... .+|+|..+++ .++++.. .+|++++||||++++|+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv--~iAraL~---~~p~lLlLDEPts~LD~~ 198 (267)
T 2zu0_C 124 AVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN--DILQMAV---LEPELCILDESDSGLDID 198 (267)
T ss_dssp HHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH--HHHHHHH---HCCSEEEEESTTTTCCHH
T ss_pred hhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH--HHHHHHH---hCCCEEEEeCCCCCCCHH
Confidence 000 1211 11112 3777777777 4444443 589999999999999999
Q ss_pred hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 148 NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 148 ~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
....+++..+.+.. .| ..+++.+||+..+.
T Consensus 199 ~~~~l~~~l~~l~~-~g--------~tviivtHd~~~~~ 228 (267)
T 2zu0_C 199 ALKVVADGVNSLRD-GK--------RSFIIVTHYQRILD 228 (267)
T ss_dssp HHHHHHHHHHTTCC-SS--------CEEEEECSSGGGGG
T ss_pred HHHHHHHHHHHHHh-cC--------CEEEEEeeCHHHHH
Confidence 99888876655432 23 67888899987764
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=140.74 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=89.1
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVL 102 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~ 102 (233)
++++++|.+.++.+ ++|+||||||||||+++|+|++. ..|.+.+.+.+....+. .+.+|++
T Consensus 36 ~L~~vsl~i~~Ge~---------------~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 36 ILENISFSISPGQR---------------VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp SEEEEEEEECTTCE---------------EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EeeceeEEEcCCCE---------------EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 45666777665554 99999999999999999999987 66777665443221111 0112222
Q ss_pred cC---------------------------------------CCCc-----------CchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 103 NP---------------------------------------ETRD-----------WYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 103 ~~---------------------------------------~~~~-----------~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
.| .+.. +|+|+.+++ .++++.. .+|
T Consensus 100 ~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv--alARAL~---~~P 174 (390)
T 3gd7_A 100 PQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM--CLARSVL---SKA 174 (390)
T ss_dssp SCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH--HHHHHHH---TTC
T ss_pred cCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH--HHHHHHh---cCC
Confidence 21 1223 788888888 5555544 589
Q ss_pred eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 133 KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 133 ~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
++++||||++++|+.....+.+..+.+. . +..+++.+||+..+.
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~--~--------~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAF--A--------DCTVILCEARIEAML 218 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTT--T--------TSCEEEECSSSGGGT
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh--C--------CCEEEEEEcCHHHHH
Confidence 9999999999999998888877655431 1 267888899986554
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.62 E-value=4.7e-16 Score=127.64 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=88.0
Q ss_pred HHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCccc--cccc
Q psy12735 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPKAV--SVIE 97 (233)
Q Consensus 26 ~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~~~--~~~~ 97 (233)
++++++|.+.++. .++|+||||||||||+|+|+|.+.+..|.+.+.+ ..+.-. +..+
T Consensus 23 il~~vsl~i~~Ge---------------~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~e 87 (229)
T 2pze_A 23 VLKDINFKIERGQ---------------LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKE 87 (229)
T ss_dssp SEEEEEEEEETTC---------------EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHH
T ss_pred eeeeeEEEEcCCC---------------EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHH
Confidence 3555666665554 5999999999999999999999988777765432 111000 0000
Q ss_pred ---------------c---ccc---cc-----------CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh
Q psy12735 98 ---------------L---YGV---LN-----------PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 98 ---------------l---~g~---~~-----------~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
. .+. .+ .....+|+|+.+++ .++++.. .+|++++||||++++|
T Consensus 88 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv--~lAral~---~~p~lllLDEPts~LD 162 (229)
T 2pze_A 88 NIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI--SLARAVY---KDADLYLLDSPFGYLD 162 (229)
T ss_dssp HHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH--HHHHHHH---SCCSEEEEESTTTTSC
T ss_pred HhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH--HHHHHHh---cCCCEEEEECcccCCC
Confidence 0 010 00 11257889999999 6655554 5899999999999999
Q ss_pred HHhHHHHhhc-cccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 146 IENMNSVMDD-NKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 146 ~~~l~~~l~~-~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+.....+++. ...+. . +..+++.+||+..+
T Consensus 163 ~~~~~~i~~~l~~~~~--~--------~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 163 VLTEKEIFESCVCKLM--A--------NKTRILVTSKMEHL 193 (229)
T ss_dssp HHHHHHHHHHCCCCCT--T--------TSEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHHHhh--C--------CCEEEEEcCChHHH
Confidence 9999888774 23321 1 26788889998765
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.61 E-value=3.7e-16 Score=144.50 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=91.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCC-------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETR------------------- 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~------------------- 107 (233)
.+|+.++|+|||||||||++++|+|++++..|.+.+.+.+....+.. +.+|++.|++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~ 446 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCH
Confidence 44556999999999999999999999999888888766554332221 22344444433
Q ss_pred --------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 108 --------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 108 --------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
.+++|..+++ .+|++.. .+|++++||||++++|+++...+.+.
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv--~lARal~---~~p~illlDEpts~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL--SIARALV---KKPKVLILDDCTSSVDPITEKRILDG 521 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH--HHHHHHH---TCCSEEEEESCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH--HHHHHHH---cCCCEEEEECCcccCCHHHHHHHHHH
Confidence 3455555555 3333332 48999999999999999998888776
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+.+. . +.++++.+|+++.+.-+ =.++.+++..+
T Consensus 522 l~~~~--~--------~~tvi~itH~l~~~~~~----d~i~vl~~G~i 555 (587)
T 3qf4_A 522 LKRYT--K--------GCTTFIITQKIPTALLA----DKILVLHEGKV 555 (587)
T ss_dssp HHHHS--T--------TCEEEEEESCHHHHTTS----SEEEEEETTEE
T ss_pred HHHhC--C--------CCEEEEEecChHHHHhC----CEEEEEECCEE
Confidence 54331 1 36888889998766422 24455555433
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.61 E-value=2.9e-16 Score=145.10 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=84.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc---cccccccccCCCC------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS---VIELYGVLNPETR------------------ 107 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~---~~~l~g~~~~~~~------------------ 107 (233)
+.+|+.++|+||||||||||+|+|+|++++..|.+.+.+.+....+ ..+.+|++.|++.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence 4456669999999999999999999999999888877665432221 1122344444333
Q ss_pred ----------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 108 ----------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 108 ----------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
.+|+|..+++ .++++.. .+|++++||||++++|+++...+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~--~iAral~---~~p~illlDEpts~LD~~~~~~i~ 520 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV--AIARALL---RDAPVLILDEATSALDTESERAIQ 520 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH--HHHHHHH---cCCCEEEEECccccCCHHHHHHHH
Confidence 3444555555 3333332 489999999999999999988887
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+..+.+. . | .++++.+|+++.+.
T Consensus 521 ~~l~~~~-~-~--------~tvi~itH~~~~~~ 543 (582)
T 3b5x_A 521 AALDELQ-K-N--------KTVLVIAHRLSTIE 543 (582)
T ss_pred HHHHHHc-C-C--------CEEEEEecCHHHHH
Confidence 7654432 1 2 57788888887553
No 40
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.61 E-value=2.2e-16 Score=144.46 Aligned_cols=135 Identities=20% Similarity=0.151 Sum_probs=93.2
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC----Cc------ccccc----------------------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN----PK------AVSVI---------------------- 96 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~----~~------~~~~~---------------------- 96 (233)
+..|+.++|+||||||||||+|+|+|.+.+..|.+...+.. ++ ..+..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 35788899999999999999999999998887776432110 00 00000
Q ss_pred cccc---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcc
Q psy12735 97 ELYG---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHC 173 (233)
Q Consensus 97 ~l~g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~ 173 (233)
+.+| ..+.....+|+|..+++ .+|++.. ++|++++||||++++|+.....+++..+.+....| .
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv--~iAraL~---~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g--------~ 437 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKL--YIAATLA---KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK--------A 437 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHH--HHHHHHH---SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT--------C
T ss_pred HHcCCHHHhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC--------C
Confidence 0111 12334567899999999 6666554 68999999999999999999888877666554434 5
Q ss_pred eEEEEeCCcCccChhhhhcceEEE
Q psy12735 174 QLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 174 ~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.+++.+||+..+.. .-.|+.++.
T Consensus 438 tvi~vsHdl~~~~~-~aDri~vl~ 460 (538)
T 3ozx_A 438 VTFIIDHDLSIHDY-IADRIIVFK 460 (538)
T ss_dssp EEEEECSCHHHHHH-HCSEEEEEE
T ss_pred EEEEEeCCHHHHHH-hCCEEEEEe
Confidence 77777888876543 234554444
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.59 E-value=2.6e-16 Score=131.75 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=80.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccc-cc----------------------------
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG-VL---------------------------- 102 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g-~~---------------------------- 102 (233)
|+.++|+||||||||||+|+|+|.+ +..|.+.+.+.+.......+.+| ++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 5569999999999999999999999 88777766442210000000111 11
Q ss_pred --------------cCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEE
Q psy12735 103 --------------NPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIR 168 (233)
Q Consensus 103 --------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~ 168 (233)
+.....+|+|..+++ .++++.. .+|++++||||++++|+.....+++..+.+..
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~------- 176 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLV--RTSLALA---SQPEIVGLDEPFENVDAARRHVISRYIKEYGK------- 176 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHH--HHHHHHH---TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-------
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEECCccccCHHHHHHHHHHHHHhcC-------
Confidence 122345667777777 4444443 58999999999999999999888776544311
Q ss_pred ccCcceEEEEeCCcCccCh
Q psy12735 169 LLAHCQLLFEVGDLQYASP 187 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~sP 187 (233)
.+++.+||+..+..
T Consensus 177 -----tviivtHd~~~~~~ 190 (263)
T 2pjz_A 177 -----EGILVTHELDMLNL 190 (263)
T ss_dssp -----EEEEEESCGGGGGG
T ss_pred -----cEEEEEcCHHHHHH
Confidence 67888888876643
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.59 E-value=3.9e-16 Score=144.65 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=91.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCc------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRD------------------ 108 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~------------------ 108 (233)
.+|+.++|+|||||||||++|+|+|++++..|.+.+.+.+....+.. +.+|++.|++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD 458 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCH
Confidence 44556999999999999999999999999888887766554332211 223444444333
Q ss_pred ---------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 109 ---------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 109 ---------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
+++|..+++ .+|++.. .+|++++||||++++|+++...+.+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv--~iAral~---~~p~illlDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL--AITRAFL---ANPKILILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH--HHHHHHH---TCCSEEEECCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH--HHHHHHh---cCCCEEEEECCccCCCHHHHHHHHHH
Confidence 455555555 3333332 48999999999999999998887765
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+.+. . +.++++.+|+++.+.- .-.++.+++..+
T Consensus 534 l~~~~--~--------~~t~i~itH~l~~~~~----~d~i~~l~~G~i 567 (598)
T 3qf4_B 534 MWKLM--E--------GKTSIIIAHRLNTIKN----ADLIIVLRDGEI 567 (598)
T ss_dssp HHHHH--T--------TSEEEEESCCTTHHHH----CSEEEEECSSSE
T ss_pred HHHHc--C--------CCEEEEEecCHHHHHc----CCEEEEEECCEE
Confidence 54432 1 2678888999886532 234556665443
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.58 E-value=3.5e-16 Score=144.46 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=89.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCcC-----------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRDW----------------- 109 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~~----------------- 109 (233)
.+|+.++|+|||||||||++++|+|.+++..|.+.+.+.+....+. .+.+|++.|++..|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 444 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCH
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCH
Confidence 4455699999999999999999999999988888876655433221 12345555544444
Q ss_pred ----------------------------------chhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc
Q psy12735 110 ----------------------------------YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155 (233)
Q Consensus 110 ----------------------------------~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~ 155 (233)
++|..+++ .+|++.. .+|++++||||++++|+++...+.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv--~lAral~---~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL--SIARIFL---NNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH--HHHHHHH---HCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH--HHHHHHH---cCCCEEEEECccccCCHHHHHHHHHH
Confidence 44444444 3333222 38999999999999999988777665
Q ss_pred cccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 156 NKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 156 ~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
.+.+. . +.++++.+|+++.+.-+ -.++.+++..+
T Consensus 520 l~~~~--~--------~~t~i~itH~l~~~~~~----d~i~~l~~G~i 553 (578)
T 4a82_A 520 LDVLS--K--------DRTTLIVAHRLSTITHA----DKIVVIENGHI 553 (578)
T ss_dssp HHHHT--T--------TSEEEEECSSGGGTTTC----SEEEEEETTEE
T ss_pred HHHHc--C--------CCEEEEEecCHHHHHcC----CEEEEEECCEE
Confidence 44331 1 25778888998876532 34455555433
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.56 E-value=9.3e-16 Score=141.72 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=88.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCc------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRD------------------ 108 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~------------------ 108 (233)
.+|+.++|+||||||||||+|+|+|.+++..|.+.+.+.+....+. .+.+|++.|++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 446 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 446 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCC
Confidence 4455699999999999999999999999888888776654432221 1224444444333
Q ss_pred ----------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhh
Q psy12735 109 ----------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMD 154 (233)
Q Consensus 109 ----------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~ 154 (233)
+|+|..+++ .++++.. .+|++++||||++++|+++...+.+
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl--~iAral~---~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI--AIARALL---RDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH--HHHHHHH---HCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH--HHHHHHH---hCCCEEEEECccccCCHHHHHHHHH
Confidence 444444444 3333222 4899999999999999999888877
Q ss_pred ccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 155 DNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 155 ~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
..+.+. . | .++++.+|+++.+.- .. .++.+++..
T Consensus 522 ~l~~~~-~-~--------~tvi~itH~~~~~~~--~d--~i~~l~~G~ 555 (582)
T 3b60_A 522 ALDELQ-K-N--------RTSLVIAHRLSTIEQ--AD--EIVVVEDGI 555 (582)
T ss_dssp HHHHHH-T-T--------SEEEEECSCGGGTTT--CS--EEEEEETTE
T ss_pred HHHHHh-C-C--------CEEEEEeccHHHHHh--CC--EEEEEECCE
Confidence 655432 1 2 578888898876642 22 344555443
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.56 E-value=2e-15 Score=128.07 Aligned_cols=122 Identities=11% Similarity=0.134 Sum_probs=82.7
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee------eCCccc--cccc-----------------cccc--
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT------LNPKAV--SVIE-----------------LYGV-- 101 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~------~~~~~~--~~~~-----------------l~g~-- 101 (233)
+..|+.++|+||||||||||+|+|+|++.+..|.+.+.+ .++.-+ +..+ ..+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 456777999999999999999999999987766654321 111000 0000 0110
Q ss_pred -ccC-----------CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhc-cccccccCceEEE
Q psy12735 102 -LNP-----------ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD-NKILTLANGERIR 168 (233)
Q Consensus 102 -~~~-----------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~-~~~l~l~~g~~i~ 168 (233)
... ....+|+|+.+++ .++++.. .+|++++||||++++|+.....+++. ...+. .+
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv--~lAraL~---~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~---- 209 (290)
T 2bbs_A 141 DISKFAEKDNIVLGEGGITLSGGQRARI--SLARAVY---KDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--AN---- 209 (290)
T ss_dssp HHHTSTTGGGCBC----CCCCHHHHHHH--HHHHHHH---SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TT----
T ss_pred HHHhccccccchhcCccCcCCHHHHHHH--HHHHHHH---CCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CC----
Confidence 000 1257899999999 5555554 58999999999999999999888774 22321 12
Q ss_pred ccCcceEEEEeCCcCcc
Q psy12735 169 LLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 169 ~~~~~~~i~et~dl~~~ 185 (233)
..+++.+||+..+
T Consensus 210 ----~tviivtHd~~~~ 222 (290)
T 2bbs_A 210 ----KTRILVTSKMEHL 222 (290)
T ss_dssp ----SEEEEECCCHHHH
T ss_pred ----CEEEEEecCHHHH
Confidence 6788888988765
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.1e-15 Score=137.65 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=85.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe------EEeeeCCc---cccccc---------------------ccc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA------RTYTLNPK---AVSVIE---------------------LYG 100 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i------~~~~~~~~---~~~~~~---------------------l~g 100 (233)
.|+.++|+||||||||||+++|+|+..+.+|.. .+...... ..+..+ .++
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 357799999999999999999999998776641 11111100 000000 011
Q ss_pred ---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEE
Q psy12735 101 ---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 177 (233)
Q Consensus 101 ---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~ 177 (233)
..++....+|+|..+++ .+|++.+ ++|++++||||++++|+.+...+++..+.+....| ..+++
T Consensus 457 l~~~~~~~~~~LSGGqkQRv--~iAraL~---~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g--------~tvii 523 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRV--AIVLALG---IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK--------KTAFI 523 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHH--HHHHHTT---SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT--------CEEEE
T ss_pred ChhhhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC--------CEEEE
Confidence 12334568899999999 7777766 69999999999999999998888776665543333 57777
Q ss_pred EeCCcCccC
Q psy12735 178 EVGDLQYAS 186 (233)
Q Consensus 178 et~dl~~~s 186 (233)
.+||+..+.
T Consensus 524 vtHdl~~~~ 532 (608)
T 3j16_B 524 VEHDFIMAT 532 (608)
T ss_dssp ECSCHHHHH
T ss_pred EeCCHHHHH
Confidence 788877664
No 47
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=8.3e-15 Score=118.48 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=67.6
Q ss_pred HHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCC----cCchhH--------
Q psy12735 46 YETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETR----DWYDGL-------- 113 (233)
Q Consensus 46 ~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~----~~~~gi-------- 113 (233)
.+.+..|+.++|+||||||||||+++|+|. .+..|.+....+..........+|++.|... .+....
T Consensus 16 l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~ 94 (208)
T 3b85_A 16 VDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV 94 (208)
T ss_dssp HHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred HHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 344688999999999999999999999999 8888887532221111122334566655421 110000
Q ss_pred ----HHHHHH---------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEE
Q psy12735 114 ----LSNIFR---------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176 (233)
Q Consensus 114 ----~~~~~~---------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i 176 (233)
...++. .++++.. .+|++++||||+++ ....+++..+.+ ..+..++ ++|++..+
T Consensus 95 ~~~~~~~~l~~glGq~qrv~lAraL~---~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 95 EPEVIPKLMEAGIVEVAPLAYMRGRT---LNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQV 161 (208)
T ss_dssp CTTHHHHHHHTTSEEEEEGGGGTTCC---BCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHh---cCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHH
Confidence 011111 2234443 58999999999998 444444444444 2233444 55555443
No 48
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.54 E-value=1.8e-15 Score=140.15 Aligned_cols=121 Identities=24% Similarity=0.226 Sum_probs=81.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCC-------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETR------------------- 107 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~------------------- 107 (233)
.+|+.++|+||||||||||+++|+|.+++..|.+.+.+.+....+. .+.+|++.|++.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 447 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSS 447 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccc
Confidence 4555699999999999999999999999888887776544322211 112333333332
Q ss_pred -----------------------------------cCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 108 -----------------------------------DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 108 -----------------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
.+|+|..+++ .++++.. .+|++++||||++++|+++...+
T Consensus 448 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv--~iAral~---~~p~illlDEpts~LD~~~~~~i 522 (595)
T 2yl4_A 448 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI--AIARALL---KNPKILLLDEATSALDAENEYLV 522 (595)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH--HHHHHHH---HCCSEEEEECCCSSCCHHHHHHH
T ss_pred cCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH--HHHHHHH---cCCCEEEEECcccCCCHHHHHHH
Confidence 3455555555 3333332 48999999999999999998887
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
.+..+.+.. + .++++.+|+++.+
T Consensus 523 ~~~l~~~~~--~--------~tvi~itH~~~~~ 545 (595)
T 2yl4_A 523 QEALDRLMD--G--------RTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHHHHT--T--------SEEEEECCCHHHH
T ss_pred HHHHHHHhc--C--------CEEEEEecCHHHH
Confidence 776554321 2 5677778877654
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.53 E-value=7.3e-16 Score=140.96 Aligned_cols=132 Identities=17% Similarity=0.097 Sum_probs=87.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE-----------EeeeC------------------Cccc-------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR-----------TYTLN------------------PKAV------- 93 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~-----------~~~~~------------------~~~~------- 93 (233)
..|+.++|+||||||||||+|+|+|.+.+..|.+. +.+.. +...
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 46778999999999999999999999887766541 10000 0000
Q ss_pred ---------------ccc---ccccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 94 ---------------SVI---ELYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 94 ---------------~~~---~l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
... +.+|. .+.....+|+|..+++ .+|++.. .+|++++||||++++|+.....+
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv--~iA~aL~---~~p~illlDEPts~LD~~~~~~l 177 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRL--LVAASLL---READVYIFDQPSSYLDVRERMNM 177 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH--HHHHHHH---SCCSEEEEESTTTTCCHHHHHHH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH--HHHHHHH---cCCCEEEEECCcccCCHHHHHHH
Confidence 000 01121 2233457889999999 6666554 68999999999999999988877
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
++..+.+.. | ..+++.+||+..+.. ...|+.+++
T Consensus 178 ~~~l~~l~~--g--------~tii~vsHdl~~~~~-~~d~i~vl~ 211 (538)
T 3ozx_A 178 AKAIRELLK--N--------KYVIVVDHDLIVLDY-LTDLIHIIY 211 (538)
T ss_dssp HHHHHHHCT--T--------SEEEEECSCHHHHHH-HCSEEEEEE
T ss_pred HHHHHHHhC--C--------CEEEEEEeChHHHHh-hCCEEEEec
Confidence 776555432 3 567777777765533 234555544
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.2e-16 Score=142.33 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=88.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE-----------eeeC------------------Cccc------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART-----------YTLN------------------PKAV------ 93 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~-----------~~~~------------------~~~~------ 93 (233)
+..|+.++|+||||||||||+|+|+|.+.+..|.+.. .+.. +...
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 4578889999999999999999999999887776510 0000 0000
Q ss_pred ---------------------cccc---ccc---cccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhH
Q psy12735 94 ---------------------SVIE---LYG---VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146 (233)
Q Consensus 94 ---------------------~~~~---l~g---~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~ 146 (233)
...+ .+| ..+.....+|+|..+++ .++++.. .+|++++||||++++|+
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv--~iAraL~---~~p~llllDEPts~LD~ 254 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF--AIGMSCV---QEADVYMFDEPSSYLDV 254 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH--HHHHHHH---SCCSEEEEECTTTTCCH
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH--HHHHHHH---hCCCEEEEECcccCCCH
Confidence 0000 111 12334567889999999 6666554 68999999999999999
Q ss_pred HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 147 ~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
.....+++..+.+...+ ..+++.+||+..+.. ...|+.+++
T Consensus 255 ~~~~~l~~~l~~l~~~g---------~tvi~vtHdl~~~~~-~~drv~vl~ 295 (608)
T 3j16_B 255 KQRLNAAQIIRSLLAPT---------KYVICVEHDLSVLDY-LSDFVCIIY 295 (608)
T ss_dssp HHHHHHHHHHHGGGTTT---------CEEEEECSCHHHHHH-HCSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCC---------CEEEEEeCCHHHHHH-hCCEEEEEe
Confidence 99888777666654333 456666677665532 234554444
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.52 E-value=5.1e-15 Score=147.74 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccc---ccccccCCCCcCchhHHHHHHH-------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIE---LYGVLNPETRDWYDGLLSNIFR------- 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~---l~g~~~~~~~~~~~gi~~~~~~------- 119 (233)
++|+.|+||||||||||||+++|.|++.+.+|.+.+++.+.+.++... .+++++|++..|++++.+|+.-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~ 1182 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV 1182 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCC
Confidence 445569999999999999999999999999999999998887766544 4788888888888888877510
Q ss_pred ------HHh----------c---------------CCCCCC----------CCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 120 ------AVN----------K---------------PLDPGS----------KERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 120 ------~~~----------~---------------~~~~~~----------~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
+.+ . .++||+ .+|++++|||||+++|.++-..+.+..+.
T Consensus 1183 sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1183 TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 000 0 000111 28999999999999999987776655443
Q ss_pred ccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC
Q psy12735 159 LTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL 203 (233)
Q Consensus 159 l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~ 203 (233)
+. .+.++|+.+|.|+.+.-+ =.|+.|++-.+
T Consensus 1263 ~~----------~~~TvI~IAHRLsTi~~a----D~I~Vld~G~I 1293 (1321)
T 4f4c_A 1263 AR----------EGRTCIVIAHRLNTVMNA----DCIAVVSNGTI 1293 (1321)
T ss_dssp TS----------SSSEEEEECSSSSTTTTC----SEEEEESSSSE
T ss_pred Hc----------CCCEEEEeccCHHHHHhC----CEEEEEECCEE
Confidence 21 235777777877655433 25666665443
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.52 E-value=3.5e-15 Score=138.25 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=86.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE------eeeCCc---ccccc------------------cc---c
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART------YTLNPK---AVSVI------------------EL---Y 99 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~------~~~~~~---~~~~~------------------~l---~ 99 (233)
..|+.++|+||||||||||+|+|+|.+.+..|.+.+ ...++. ..+.. ++ +
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 467889999999999999999999999887776532 111110 00100 01 1
Q ss_pred cc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEE
Q psy12735 100 GV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176 (233)
Q Consensus 100 g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i 176 (233)
|. .+.....+|+|..+++ .++++.. ++|++++||||++++|+.....+++..+.+....| ..++
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv--~iAraL~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g--------~tvi 526 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRV--AIAATLL---RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE--------KTAL 526 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHH--HHHHHHT---SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT--------CEEE
T ss_pred CCchHhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC--------CEEE
Confidence 11 1223457888999999 6666555 68999999999999999999888877665543333 5677
Q ss_pred EEeCCcCccC
Q psy12735 177 FEVGDLQYAS 186 (233)
Q Consensus 177 ~et~dl~~~s 186 (233)
+.+||+..+.
T Consensus 527 ~vsHd~~~~~ 536 (607)
T 3bk7_A 527 VVEHDVLMID 536 (607)
T ss_dssp EECSCHHHHH
T ss_pred EEeCCHHHHH
Confidence 7777777654
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.51 E-value=5.2e-15 Score=135.46 Aligned_cols=124 Identities=22% Similarity=0.193 Sum_probs=84.6
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE------eeeCCc---ccccc------------------cc---c
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART------YTLNPK---AVSVI------------------EL---Y 99 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~------~~~~~~---~~~~~------------------~l---~ 99 (233)
..|+.++|+||||||||||+|+|+|.+.+..|.+.+ ...++. ..+.. ++ +
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 468889999999999999999999999887766532 111110 00000 01 1
Q ss_pred cc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEE
Q psy12735 100 GV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176 (233)
Q Consensus 100 g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i 176 (233)
|. .+......|+|..+++ .+++... ++|++++||||++++|+.+...+++..+.+....| ..++
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv--~lAraL~---~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g--------~tvi 456 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRV--AIAATLL---RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE--------KTAL 456 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHH--HHHHHHT---SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT--------CEEE
T ss_pred CChhhhcCChhhCCHHHHHHH--HHHHHHH---hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC--------CEEE
Confidence 11 1223457888999999 6666554 68999999999999999999888877665543323 4666
Q ss_pred EEeCCcCccC
Q psy12735 177 FEVGDLQYAS 186 (233)
Q Consensus 177 ~et~dl~~~s 186 (233)
+.+||+..+.
T Consensus 457 ~vsHd~~~~~ 466 (538)
T 1yqt_A 457 VVEHDVLMID 466 (538)
T ss_dssp EECSCHHHHH
T ss_pred EEeCCHHHHH
Confidence 6666666553
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.50 E-value=6.6e-15 Score=134.74 Aligned_cols=134 Identities=22% Similarity=0.195 Sum_probs=87.1
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE---------EeeeC------------------Cccc-------
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR---------TYTLN------------------PKAV------- 93 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~---------~~~~~------------------~~~~------- 93 (233)
.+..|+.++|+||||||||||+|+|+|.+.+..|.+. +.+.. ++..
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 3567888999999999999999999999877665520 00000 0000
Q ss_pred --cc-------------cc---cccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHH
Q psy12735 94 --SV-------------IE---LYGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSV 152 (233)
Q Consensus 94 --~~-------------~~---l~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~ 152 (233)
+. .+ .+|. .+.....+|+|..+++ .++++.. .+|++++||||++++|+.....+
T Consensus 123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv--~iAraL~---~~P~lLlLDEPTs~LD~~~~~~l 197 (538)
T 1yqt_A 123 KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRV--AIAAALL---RNATFYFFDEPSSYLDIRQRLNA 197 (538)
T ss_dssp CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHH--HHHHHHH---SCCSEEEEESTTTTCCHHHHHHH
T ss_pred hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCcccCCHHHHHHH
Confidence 00 00 0121 1222356788999999 6666554 68999999999999999998887
Q ss_pred hhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEE
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMV 196 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v 196 (233)
++..+.+... | ..+++.+||+..+.. ...|+.++
T Consensus 198 ~~~L~~l~~~-g--------~tvi~vsHd~~~~~~-~~dri~vl 231 (538)
T 1yqt_A 198 ARAIRRLSEE-G--------KSVLVVEHDLAVLDY-LSDIIHVV 231 (538)
T ss_dssp HHHHHHHHHT-T--------CEEEEECSCHHHHHH-HCSEEEEE
T ss_pred HHHHHHHHhc-C--------CEEEEEeCCHHHHHH-hCCEEEEE
Confidence 7766655432 3 567777777665422 23444444
No 55
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.48 E-value=3.2e-15 Score=117.10 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=74.6
Q ss_pred hhcceEEEEcCCCCChHHHHH------------HHHhhhhhcCCCeEEeeeCCcccc--ccc--ccccc--cCCCCcCch
Q psy12735 50 LTRHSTMIVGPTGGGKSVVIN------------ALVKTSTVLGYPARTYTLNPKAVS--VIE--LYGVL--NPETRDWYD 111 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik------------~L~~~~~~~~~~i~~~~~~~~~~~--~~~--l~g~~--~~~~~~~~~ 111 (233)
.+|+.++|+|||||||||+++ .+.+...+..+...+......... ... ..|.. .......++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 86 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQES 86 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence 456779999999999999999 444444333222211100000000 000 01111 112244577
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH----------------hHHHHhhccccccccCceEEEccCcceE
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE----------------NMNSVMDDNKILTLANGERIRLLAHCQL 175 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~----------------~l~~~l~~~~~l~l~~g~~i~~~~~~~~ 175 (233)
|..+++ .+++... .+|++++||||++++|.. ....+.+..+.+.-. | ..+
T Consensus 87 g~~qrv--~iAral~---~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g--------~tv 152 (171)
T 4gp7_A 87 ARKPLI--EMAKDYH---CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G--------FRY 152 (171)
T ss_dssp HHHHHH--HHHHHTT---CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T--------CSE
T ss_pred HHHHHH--HHHHHcC---CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C--------CcE
Confidence 888888 6666665 689999999999999998 446666555544322 3 678
Q ss_pred EEEeCCcCccC
Q psy12735 176 LFEVGDLQYAS 186 (233)
Q Consensus 176 i~et~dl~~~s 186 (233)
++.+||+..+.
T Consensus 153 i~vtH~~~~~~ 163 (171)
T 4gp7_A 153 VYILNSPEEVE 163 (171)
T ss_dssp EEEECSHHHHH
T ss_pred EEEeCCHHHhh
Confidence 88888877664
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.48 E-value=3.7e-15 Score=138.08 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=88.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE---------EeeeC------------------Cccc--------
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR---------TYTLN------------------PKAV-------- 93 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~---------~~~~~------------------~~~~-------- 93 (233)
+..|+.++|+||||||||||+|+|+|.+.+..|.+. +.+.. ++..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 193 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK 193 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcc
Confidence 567888999999999999999999999877665530 00000 0000
Q ss_pred -cc-------------ccc---ccc---ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 94 -SV-------------IEL---YGV---LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 94 -~~-------------~~l---~g~---~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
+. .++ +|. .+.....+|+|..+++ .+|++.. .+|++++||||++++|+.....++
T Consensus 194 ~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv--aIAraL~---~~P~lLlLDEPTs~LD~~~~~~l~ 268 (607)
T 3bk7_A 194 GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRV--AIAAALL---RKAHFYFFDEPSSYLDIRQRLKVA 268 (607)
T ss_dssp SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH--HHHHHHH---SCCSEEEEECTTTTCCHHHHHHHH
T ss_pred ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH--HHHHHHh---cCCCEEEEECCcccCCHHHHHHHH
Confidence 00 000 111 1223456789999999 6666554 689999999999999999988887
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
+..+.+... | ..+++.+||+..+.. ...|..+++
T Consensus 269 ~~L~~l~~~-g--------~tvIivsHdl~~~~~-~adri~vl~ 302 (607)
T 3bk7_A 269 RVIRRLANE-G--------KAVLVVEHDLAVLDY-LSDVIHVVY 302 (607)
T ss_dssp HHHHHHHHT-T--------CEEEEECSCHHHHHH-HCSEEEEEE
T ss_pred HHHHHHHhc-C--------CEEEEEecChHHHHh-hCCEEEEEC
Confidence 766655432 3 577777888775532 234554443
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.48 E-value=1.5e-14 Score=144.45 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=96.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccc---ccccccCCCCcCchhHHHHHHH-------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIE---LYGVLNPETRDWYDGLLSNIFR------- 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~---l~g~~~~~~~~~~~gi~~~~~~------- 119 (233)
++|+.++|+|||||||||++++|.|.+.+..|.+.+.+.+.+.++... .++++.|++..|++++.+|+.-
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~ 521 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITR 521 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCH
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchH
Confidence 345559999999999999999999999999999999888776665443 4778888888777777777721
Q ss_pred ------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 120 ------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 120 ------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
.+|++. -.+|++++||||++++|.++-..+.+...
T Consensus 522 ~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl---~~~~~IliLDE~tSaLD~~te~~i~~~l~ 598 (1321)
T 4f4c_A 522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL---VRNPKILLLDEATSALDAESEGIVQQALD 598 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH---TTCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH---ccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence 111111 13899999999999999987655544433
Q ss_pred cccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
.+. .+.+.|+.+|.++.+.-+ =-++.+++-
T Consensus 599 ~~~----------~~~T~iiiaHrls~i~~a----D~Iivl~~G 628 (1321)
T 4f4c_A 599 KAA----------KGRTTIIIAHRLSTIRNA----DLIISCKNG 628 (1321)
T ss_dssp HHH----------TTSEEEEECSCTTTTTTC----SEEEEEETT
T ss_pred HHh----------CCCEEEEEcccHHHHHhC----CEEEEeeCC
Confidence 221 235777778888766554 245555543
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.46 E-value=1.6e-14 Score=143.82 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=83.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccc---ccccccccCCCCc------------------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV---IELYGVLNPETRD------------------ 108 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~---~~l~g~~~~~~~~------------------ 108 (233)
.+|+.++|+||||||||||+++|.|++++.+|.+.+.+.+....+. ...+|+++|++..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~ 1136 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCC
Confidence 4456699999999999999999999999888887776655433221 1224444444433
Q ss_pred -----------------------------------CchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHh
Q psy12735 109 -----------------------------------WYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVM 153 (233)
Q Consensus 109 -----------------------------------~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l 153 (233)
+|+|..+++ .+|++.. .+|++++||||++++|+++...+.
T Consensus 1137 ~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv--~iARal~---~~p~iLiLDEpTs~lD~~~~~~i~ 1211 (1284)
T 3g5u_A 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI--AIARALV---RQPHILLLDEATSALDTESEKVVQ 1211 (1284)
T ss_dssp CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH--HHHHHHH---HCCSSEEEESCSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH--HHHHHHH---cCCCEEEEeCCcccCCHHHHHHHH
Confidence 444444444 3333222 389999999999999999887776
Q ss_pred hccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 154 DDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 154 ~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+..+.. .. +.++++.+||++.+.
T Consensus 1212 ~~l~~~--~~--------~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1212 EALDKA--RE--------GRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp HHHHHH--SS--------SSCEEEECSCTTGGG
T ss_pred HHHHHh--CC--------CCEEEEEecCHHHHH
Confidence 654432 12 267888889988763
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.45 E-value=2.1e-14 Score=143.06 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=83.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccc---cccccccCCCCcCchhHHHHHHH-------
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI---ELYGVLNPETRDWYDGLLSNIFR------- 119 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~---~l~g~~~~~~~~~~~gi~~~~~~------- 119 (233)
.+|+.++|+||||||||||+++|.|++++..|.+.+.+.+....+.. +.+|++.|++..+++++.+|+..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~ 493 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM 493 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCH
Confidence 34555999999999999999999999999989888876655443322 23566666655555555555421
Q ss_pred ------------------------------------------HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccc
Q psy12735 120 ------------------------------------------AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNK 157 (233)
Q Consensus 120 ------------------------------------------~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~ 157 (233)
.+|++.. .+|++++||||++++|.++-..+.+..+
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~---~~p~iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV---RNPKILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH---HCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh---cCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 2222221 3899999999999999998766655433
Q ss_pred cccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 158 ILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 158 ~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.+ .. +.++++.+|+++.+.
T Consensus 571 ~~-~~---------~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 571 KA-RE---------GRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HH-HT---------TSEEEEECSCHHHHT
T ss_pred HH-cC---------CCEEEEEecCHHHHH
Confidence 22 11 246666667666543
No 60
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.40 E-value=3.1e-13 Score=106.62 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=75.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccc---cccccccc----------------------ccCCCCc
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV---SVIELYGV----------------------LNPETRD 108 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~---~~~~l~g~----------------------~~~~~~~ 108 (233)
.++|+||||||||||+++|++.+.. .+.+.+.... .....+|+ .+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-----~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-----GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----cCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccC
Confidence 4899999999999999999998741 1111111000 00011111 1111234
Q ss_pred CchhHHHHHHHHHhcC-----CCCCCCCceEEEEeC--CCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeC-
Q psy12735 109 WYDGLLSNIFRAVNKP-----LDPGSKERKYILFDG--DVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG- 180 (233)
Q Consensus 109 ~~~gi~~~~~~~~~~~-----~~~~~~~~~~lvlDe--p~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~- 180 (233)
.++|..+++ .++++ .. .+|+++++|| |++++|+.....+.+.... .+ ..+++.+|
T Consensus 77 lSgG~~qr~--~la~aa~~~~l~---~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~--------~~~i~~~H~ 139 (178)
T 1ye8_A 77 VQYFEELAI--PILERAYREAKK---DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PN--------VNVVATIPI 139 (178)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHH---CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TT--------SEEEEECCS
T ss_pred cCHHHHHHH--HHHhhccccccc---cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CC--------CeEEEEEcc
Confidence 678988887 44442 22 4899999999 9999999887777654332 12 34555554
Q ss_pred --CcCccChhhhhc--ceEEEECCCC
Q psy12735 181 --DLQYASPATVSR--AGMVYVDPIN 202 (233)
Q Consensus 181 --dl~~~sPa~isr--~~~v~~~~~~ 202 (233)
|...+. .+.+| |.++.+....
T Consensus 140 ~h~~~~~~-~i~~r~~~~i~~~~~~~ 164 (178)
T 1ye8_A 140 RDVHPLVK-EIRRLPGAVLIELTPEN 164 (178)
T ss_dssp SCCSHHHH-HHHTCTTCEEEECCTTT
T ss_pred CCCchHHH-HHHhcCCcEEEEecCcC
Confidence 544443 34566 7888877543
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.34 E-value=5e-13 Score=125.33 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred CCCcCchhHHHHHHHHHhcCCCCCCCCce--EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLDPGSKERK--YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~--~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
....+|+|..+++ .+|++.. .+|+ +++||||++++|+.....+++..+.+.-. | .++++.+||+
T Consensus 199 ~~~~LSGGe~QRv--~iArAL~---~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g--------~tvi~vtHd~ 264 (670)
T 3ux8_A 199 SAGTLSGGEAQRI--RLATQIG---SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-G--------NTLIVVEHDE 264 (670)
T ss_dssp BGGGSCHHHHHHH--HHHHHHH---TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-T--------CEEEEECCCH
T ss_pred CcccCCHHHHHHH--HHHHHHh---hCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-C--------CEEEEEeCCH
Confidence 3457899999999 6666554 4556 99999999999999988888776655322 3 5777778887
Q ss_pred Ccc
Q psy12735 183 QYA 185 (233)
Q Consensus 183 ~~~ 185 (233)
..+
T Consensus 265 ~~~ 267 (670)
T 3ux8_A 265 DTM 267 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.33 E-value=7.4e-14 Score=134.46 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=46.8
Q ss_pred CcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
..+|+|..+++ .+++... .+|++++||||++++|.++...+++..+.+ + ..+|+.+||+..+.
T Consensus 900 ~~LSGGQkQRV--aLArAL~---~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g---------~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 900 RGLSGGQKVKL--VLAAGTW---QRPHLIVLDEPTNYLDRDSLGALSKALKEF---E---------GGVIIITHSAEFTK 962 (986)
T ss_dssp GGCCHHHHHHH--HHHHHHT---TCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S---------SEEEEECSCHHHHT
T ss_pred cccCHHHHHHH--HHHHHHH---hCCCEEEEECCccCCCHHHHHHHHHHHHHh---C---------CEEEEEECCHHHHH
Confidence 46777888888 5555444 589999999999999999988887765443 2 36777777766553
No 63
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.29 E-value=8.4e-12 Score=107.57 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=77.2
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-cccccccccCCCCcCchhHHHHHHHHHhc
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLNPETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~~~~~~~~~gi~~~~~~~~~~ 123 (233)
+...+..|+.++|+|||||||||++++|++.+.+..|.+.+.+...-... ..+..+++.+ +|+.++. .+++
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g------gg~~~r~--~la~ 235 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG------GNITSAD--CLKS 235 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB------TTBCHHH--HHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC------CChhHHH--HHHH
Confidence 44677889999999999999999999999999988888887654311111 1122232221 5555555 3333
Q ss_pred CCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEE
Q psy12735 124 PLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVY 197 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~ 197 (233)
+.. .+|+++++|||++..-.+ .+... ..| +..+++.+|+++ ......|...+.
T Consensus 236 aL~---~~p~ilildE~~~~e~~~----~l~~~-----~~g-------~~tvi~t~H~~~--~~~~~dri~~l~ 288 (330)
T 2pt7_A 236 CLR---MRPDRIILGELRSSEAYD----FYNVL-----CSG-------HKGTLTTLHAGS--SEEAFIRLANMS 288 (330)
T ss_dssp HTT---SCCSEEEECCCCSTHHHH----HHHHH-----HTT-------CCCEEEEEECSS--HHHHHHHHHHHH
T ss_pred Hhh---hCCCEEEEcCCChHHHHH----HHHHH-----hcC-------CCEEEEEEcccH--HHHHhhhheehh
Confidence 332 589999999999843222 22211 112 245777788877 233445554443
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.25 E-value=2.6e-12 Score=120.47 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=52.2
Q ss_pred CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
....+|+|..+++ .+|++......+|++++||||++++|+.....+++..+.+.-. | .++++.+||+..
T Consensus 540 ~~~~LSgG~~qrv--~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g--------~tvi~vtHd~~~ 608 (670)
T 3ux8_A 540 PATTLSGGEAQRV--KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-G--------DTVLVIEHNLDV 608 (670)
T ss_dssp CGGGCCHHHHHHH--HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECCCHHH
T ss_pred CchhCCHHHHHHH--HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C--------CEEEEEeCCHHH
Confidence 3467899999999 5555543212357899999999999999998888776655432 3 577788888876
Q ss_pred cC
Q psy12735 185 AS 186 (233)
Q Consensus 185 ~s 186 (233)
+.
T Consensus 609 ~~ 610 (670)
T 3ux8_A 609 IK 610 (670)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 65
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.24 E-value=2.9e-11 Score=100.85 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=54.0
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhc-CCCeEEeeeCCcccccccccccccCCCCcC-chhHHHHHHHHHhcCCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDW-YDGLLSNIFRAVNKPLD 126 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~-~~gi~~~~~~~~~~~~~ 126 (233)
+..|+.++|+|||||||||+++++++.+.+. +|.+.+.+.+.... .....+++.+..... ...+...+.+.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-~~~~~~~v~q~~~gl~~~~l~~~la~aL~---- 96 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKKSIVNQREVGEDTKSFADALRAALR---- 96 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSSEEEEEEBTTTBSCHHHHHHHHHH----
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-cCCcceeeeHHHhCCCHHHHHHHHHHHHh----
Confidence 6788899999999999999999999999887 78887765443211 111112222210000 0122222222222
Q ss_pred CCCCCceEEEEeCCCCH
Q psy12735 127 PGSKERKYILFDGDVDA 143 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~ 143 (233)
++|+++++|||+|.
T Consensus 97 ---~~p~illlDEp~D~ 110 (261)
T 2eyu_A 97 ---EDPDVIFVGEMRDL 110 (261)
T ss_dssp ---HCCSEEEESCCCSH
T ss_pred ---hCCCEEEeCCCCCH
Confidence 47999999999943
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.22 E-value=2e-12 Score=124.52 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=76.5
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHh-hhh--hcCC--CeEEeeeCC----cccc---------------c---cccccc
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVK-TST--VLGY--PARTYTLNP----KAVS---------------V---IELYGV 101 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~-~~~--~~~~--~i~~~~~~~----~~~~---------------~---~~l~g~ 101 (233)
+..|+.++|+||||||||||+|+|++ ... .... .+.+...++ ...+ . .+.+|+
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 45677799999999999999999984 111 0000 111100000 0000 0 011232
Q ss_pred ----ccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEE
Q psy12735 102 ----LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLF 177 (233)
Q Consensus 102 ----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~ 177 (233)
.++....+|+|..+++ .++++.. .+|++++||||++++|+.+...+++..+. . +..+++
T Consensus 538 ~~~~~~~~~~~LSGGqkQRv--aLArAL~---~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~---------g~tvIi 600 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKL--ALARAVL---RNADILLLDEPTNHLDTVNVAWLVNYLNT---C---------GITSIT 600 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHH--HHHHHHH---TTCSEEEEESTTTTCCHHHHHHHHHHHHH---S---------CSEEEE
T ss_pred ChhhhcCCcccCCHHHHHHH--HHHHHHh---cCCCEEEEECCccCCCHHHHHHHHHHHHh---C---------CCEEEE
Confidence 1333467899999999 6655554 58999999999999999998888765443 1 256777
Q ss_pred EeCCcCccC
Q psy12735 178 EVGDLQYAS 186 (233)
Q Consensus 178 et~dl~~~s 186 (233)
.+||+..+.
T Consensus 601 vSHdl~~l~ 609 (986)
T 2iw3_A 601 ISHDSVFLD 609 (986)
T ss_dssp ECSCHHHHH
T ss_pred EECCHHHHH
Confidence 777776553
No 67
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.19 E-value=9.1e-11 Score=102.03 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=64.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhc-CCCeEEeeeCCcccccccccccccCCCC-cCchhHHHHHHHHHhcCC
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETR-DWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-~~~i~~~~~~~~~~~~~~l~g~~~~~~~-~~~~gi~~~~~~~~~~~~ 125 (233)
....+..++|+|||||||||+++++++.+.+. ++.+.. .-++-........+.+.+... .-..++...+.+. .
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t-~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L 193 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT-IEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----L 193 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----T
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE-ccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----h
Confidence 34566789999999999999999999999876 454433 223322222221222222110 0012233322222 2
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
. ++|+++++|||++....+.+.... ..| ..++..+|+.+.+
T Consensus 194 ~---~~PdvillDEp~d~e~~~~~~~~~--------~~G--------~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 R---EDPDIILVGEMRDLETIRLALTAA--------ETG--------HLVFGTLHTTSAA 234 (356)
T ss_dssp T---SCCSEEEESCCCSHHHHHHHHHHH--------HTT--------CEEEEEESCSSHH
T ss_pred h---hCcCEEecCCCCCHHHHHHHHHHH--------hcC--------CEEEEEEccChHH
Confidence 2 689999999999654433322221 113 4567777777644
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.4e-12 Score=113.29 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=76.7
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC-C-eEEeeeC-------Cccc---------ccc-ccc------
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-P-ARTYTLN-------PKAV---------SVI-ELY------ 99 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~-i~~~~~~-------~~~~---------~~~-~l~------ 99 (233)
+...+..|+.++|+||||||||||+|+|+|.+.+.+| . +.+.+-. ++.. +.. .++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~ 210 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTS 210 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBS
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccccc
Confidence 4455678999999999999999999999999988777 6 6553200 0000 110 001
Q ss_pred ---------------ccccC-CCCcCchhHHHHHHHHHhcC--CCCCCCCceE----EEEeC-CCCHHhHHhHHHHhhcc
Q psy12735 100 ---------------GVLNP-ETRDWYDGLLSNIFRAVNKP--LDPGSKERKY----ILFDG-DVDALWIENMNSVMDDN 156 (233)
Q Consensus 100 ---------------g~~~~-~~~~~~~gi~~~~~~~~~~~--~~~~~~~~~~----lvlDe-p~~~~~~~~l~~~l~~~ 156 (233)
|.-+. .....++|+.+++ .++++ .. .+|++ ++||| |++++|.. ...+.+..
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrl--alAra~rL~---~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~ 284 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERINENKDLYLECISQL--GQVVGQRLH---LDPQVRRSGCIVDTPSISQLDEN-LAELHHII 284 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHH--HHHHHHHHH---HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH
T ss_pred CcchHHHHHHHHHHhCCCcccchhhhhHHHHHHH--HHHHHHHhc---cCcccCcceEEEeCCcccccChh-HHHHHHHH
Confidence 11000 0234567899988 44443 33 58999 99999 99999887 43333322
Q ss_pred ccccccCceEEEccCcceEEEEeCCcC
Q psy12735 157 KILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 157 ~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+.+ +..+++.+||..
T Consensus 285 ~~~------------~~tviiVth~~~ 299 (460)
T 2npi_A 285 EKL------------NVNIMLVLCSET 299 (460)
T ss_dssp HHT------------TCCEEEEECCSS
T ss_pred HHh------------CCCEEEEEccCc
Confidence 211 246788888876
No 69
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.13 E-value=1.5e-10 Score=101.21 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=57.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhc-CCCeEEeeeCCcccccccccccccC-----CCCcCchhHHHHHHHHHh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNP-----ETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~-~~~i~~~~~~~~~~~~~~l~g~~~~-----~~~~~~~gi~~~~~~~~~ 122 (233)
+..+..++|+|||||||||++++|++.+.+. ++.+....-+. ........+++.| ....|+.++..++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~-e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L----- 206 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI-EYVFKHKKSIVNQREVGEDTKSFADALRAAL----- 206 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC-CSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH-hhhhccCceEEEeeecCCCHHHHHHHHHHHh-----
Confidence 5678899999999999999999999999886 67775544332 2222233444544 3344543333222
Q ss_pred cCCCCCCCCceEEEEeCCCCHHh
Q psy12735 123 KPLDPGSKERKYILFDGDVDALW 145 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~ 145 (233)
..+|+++++|||++...
T Consensus 207 ------~~~pd~illdE~~d~e~ 223 (372)
T 2ewv_A 207 ------REDPDVIFVGEMRDLET 223 (372)
T ss_dssp ------TSCCSEEEESCCCSHHH
T ss_pred ------hhCcCEEEECCCCCHHH
Confidence 14799999999996543
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.06 E-value=6.9e-12 Score=110.98 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=72.0
Q ss_pred HHHHCCCeehHHHH----HHHHHHHHHH-hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC----------C
Q psy12735 26 VLKQDNYEMVPVQV----DKVVQMYETM-LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN----------P 90 (233)
Q Consensus 26 ~~~~~~l~~~~~~~----~k~~ql~~~l-~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~----------~ 90 (233)
+++++++.+.++.+ .++.+..+.. ..+..++|+||||||||||+|+|+|...+..|.+...+.. +
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~ 117 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc
Confidence 45555555555552 2333333222 2333789999999999999999999887666554332211 0
Q ss_pred --cccccccccccccCC-----------------CCcCchh--HHHHHHHHHhcCCCCC-------CCCceEEEEeCCCC
Q psy12735 91 --KAVSVIELYGVLNPE-----------------TRDWYDG--LLSNIFRAVNKPLDPG-------SKERKYILFDGDVD 142 (233)
Q Consensus 91 --~~~~~~~l~g~~~~~-----------------~~~~~~g--i~~~~~~~~~~~~~~~-------~~~~~~lvlDep~~ 142 (233)
..++..+..|+.... ....+.| ..+++ .+++..... ..+|+++++|||++
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv--~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI--DIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHH--HHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHH--HHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 011222222211000 0013334 55554 222222100 01788899999999
Q ss_pred HHhHHhHHHHhhccccc
Q psy12735 143 ALWIENMNSVMDDNKIL 159 (233)
Q Consensus 143 ~~~~~~l~~~l~~~~~l 159 (233)
++|+.....+++..+.+
T Consensus 196 gLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 196 EPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99998877776655444
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.06 E-value=2.1e-10 Score=93.81 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=26.5
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHH--hhhhhcCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALV--KTSTVLGY 81 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~--~~~~~~~~ 81 (233)
+..|+.++|+||||||||||+++++ +...+.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~ 61 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP 61 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 4678889999999999999999999 55334333
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.05 E-value=7.7e-11 Score=113.25 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+....+|+|..+++ .+|+.......+|++++||||++++|+.....+++....+.-. | .++|+.+||+.
T Consensus 801 q~~~~LSGGErQRV--~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G--------~TVIvI~HdL~ 869 (916)
T 3pih_A 801 QPATTLSGGEAQRI--KLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-G--------NTVIVIEHNLD 869 (916)
T ss_dssp CCSTTCCHHHHHHH--HHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECCCHH
T ss_pred CCccCCCHHHHHHH--HHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHH
Confidence 44567899999999 6665554222357999999999999999988888776655433 3 46677777776
Q ss_pred ccC
Q psy12735 184 YAS 186 (233)
Q Consensus 184 ~~s 186 (233)
.+.
T Consensus 870 ~i~ 872 (916)
T 3pih_A 870 VIK 872 (916)
T ss_dssp HHT
T ss_pred HHH
Confidence 553
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=7.9e-10 Score=95.24 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=80.8
Q ss_pred EEEEcCCCCChHHHHHHHHh-hhhhcCCCeEEeeeCCcc-cccccccccccCCC--------CcCchh-HHHHHHHHHhc
Q psy12735 55 TMIVGPTGGGKSVVINALVK-TSTVLGYPARTYTLNPKA-VSVIELYGVLNPET--------RDWYDG-LLSNIFRAVNK 123 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~-~~~~~~~~i~~~~~~~~~-~~~~~l~g~~~~~~--------~~~~~g-i~~~~~~~~~~ 123 (233)
+.|+||+|+||||+++.+++ ++.+..+.+.+.+..... .......+++.+.. ....++ .....+..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 99999999999999999999 556555555443221100 00000111111100 000111 22233333332
Q ss_pred CCC--------CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceE
Q psy12735 124 PLD--------PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGM 195 (233)
Q Consensus 124 ~~~--------~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~ 195 (233)
... +-..+++++++||+.. ++.+..+.++...... +.+..+++.+|++..+.|+..|||..
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----------~~~~~~Il~t~~~~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKY----------SKNIRLIMVCDSMSPIIAPIKSQCLL 187 (354)
T ss_dssp TTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS----------TTTEEEEEEESCSCSSCHHHHTTSEE
T ss_pred hccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----------cCCCEEEEEeCCHHHHHHHHHhhceE
Confidence 110 0023789999999987 7777776665543221 23478999999999999999999999
Q ss_pred EEECCCCCcchHHHHHHHh
Q psy12735 196 VYVDPINLGYQPYWTRWVN 214 (233)
Q Consensus 196 v~~~~~~~~~~~~~~swl~ 214 (233)
+.+.+-.. .-+..|+.
T Consensus 188 ~~~~~~~~---~~~~~~l~ 203 (354)
T 1sxj_E 188 IRCPAPSD---SEISTILS 203 (354)
T ss_dssp EECCCCCH---HHHHHHHH
T ss_pred EecCCcCH---HHHHHHHH
Confidence 98886432 23444554
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.05 E-value=2.5e-11 Score=107.22 Aligned_cols=71 Identities=17% Similarity=0.022 Sum_probs=49.0
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCc--eEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 109 WYDGLLSNIFRAVNKPLDPGSKER--KYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 109 ~~~gi~~~~~~~~~~~~~~~~~~~--~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
.|+|..+++ .++.... .+| .+++||||++++|+.....+.+..+.+. . | ..+|+.|||+..+.
T Consensus 296 lSgGe~qrl--~lA~~l~---~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~--------~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRV--MLAVSTV---LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-T--------RQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHH--HHHHHHH---HCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-T--------SEEEEECSCHHHHT
T ss_pred cCHhHHHHH--HHHHHHH---hCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-C--------CEEEEEeCcHHHHh
Confidence 588999988 3433322 356 9999999999999999988887766553 2 2 57777788875543
Q ss_pred hhhhhcceEE
Q psy12735 187 PATVSRAGMV 196 (233)
Q Consensus 187 Pa~isr~~~v 196 (233)
...|..++
T Consensus 361 --~~d~i~~l 368 (415)
T 4aby_A 361 --RAHHHYKV 368 (415)
T ss_dssp --TCSEEEEE
T ss_pred --hcCeEEEE
Confidence 23444444
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.04 E-value=3.9e-11 Score=114.43 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+....+|+|..+++ .+++........|++++||||++++|+.....+++..+.+.-. | ..+|+.+||+.
T Consensus 726 ~~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G--------~tVIvisHdl~ 794 (842)
T 2vf7_A 726 QPATELSGGEAQRI--KLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-G--------NTVIAVEHKMQ 794 (842)
T ss_dssp CCGGGCCHHHHHHH--HHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECCCHH
T ss_pred CCcccCCHHHHHHH--HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEcCCHH
Confidence 33456788999998 7777665111147999999999999999988887766655433 3 46777777777
Q ss_pred cc
Q psy12735 184 YA 185 (233)
Q Consensus 184 ~~ 185 (233)
.+
T Consensus 795 ~i 796 (842)
T 2vf7_A 795 VV 796 (842)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.03 E-value=6.4e-09 Score=88.41 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=35.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
..++.++|+|||||||||+++.|++.+.+.+|.+.+.+.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 35678999999999999999999999998899988876654
No 77
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.02 E-value=2.5e-10 Score=92.11 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=33.5
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
+..|+.++|+|||||||||+++.+++...+.++.+.+....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 45677899999999999999999998777777777665543
No 78
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.97 E-value=6.4e-10 Score=107.04 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=67.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh--hcCCCe--EEeeeCCcccccccccccc---cCCCCcCchhHHHHHHHHHh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST--VLGYPA--RTYTLNPKAVSVIELYGVL---NPETRDWYDGLLSNIFRAVN 122 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~--~~~~~i--~~~~~~~~~~~~~~l~g~~---~~~~~~~~~gi~~~~~~~~~ 122 (233)
..|+.++|+|||||||||++|++++..- ..|..+ ....+.. .......+|.. ......++.|+.+.. .+.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~-~d~i~~~ig~~d~l~~~~stfs~em~~~~--~il 747 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI-VDGIFTRMGAADNIYKGRSTFMEELTDTA--EII 747 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC-CSEEEEEC----------CCHHHHHHHHH--HHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH-HHHHHHhCChHHHHHHhHHHhhHHHHHHH--HHH
Confidence 4577899999999999999999876431 112111 0000000 00001112211 122245566776665 333
Q ss_pred cCCCCCCCCceEEEEeCCCCHHhHHhHHHHh-hccccccccCceEEEccCcceEEEEeCCcCccC
Q psy12735 123 KPLDPGSKERKYILFDGDVDALWIENMNSVM-DDNKILTLANGERIRLLAHCQLLFEVGDLQYAS 186 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l-~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~s 186 (233)
+.. .+|.+++||||+.++|+.....+. .....+....| ..+++.||++..+.
T Consensus 748 ~~a----~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g--------~tvl~vTH~~el~~ 800 (918)
T 3thx_B 748 RKA----TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK--------SLTLFVTHYPPVCE 800 (918)
T ss_dssp HHC----CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC--------CEEEEECSCGGGGG
T ss_pred Hhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC--------CeEEEEeCcHHHHH
Confidence 322 489999999999999987655554 22222211123 67888888877654
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.97 E-value=1.2e-08 Score=88.74 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=35.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
.++.++|+|||||||||+++.|++.+.+.++.+.+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 5678999999999999999999999998899988877654
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=4.6e-10 Score=94.02 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=22.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
.++|+||||||||||+|+|+|...+..|.+.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g 37 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE 37 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence 4899999999999999999999887777665543
No 81
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.96 E-value=7.7e-10 Score=89.88 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh--cCCCeEEeeeC
Q psy12735 41 KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLN 89 (233)
Q Consensus 41 k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~~~~~ 89 (233)
|+-.-+-.+..|+.++|+||||||||||+++|++.+.+ ..+.+.+.+..
T Consensus 5 ~~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 5 KIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred ccccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 33344556788999999999999999999999998864 44455544433
No 82
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.94 E-value=3.6e-09 Score=92.12 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc-ccccccccc-CCCCc---CchhHHHHHH
Q psy12735 44 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS-VIELYGVLN-PETRD---WYDGLLSNIF 118 (233)
Q Consensus 44 ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~-~~~l~g~~~-~~~~~---~~~gi~~~~~ 118 (233)
.+...+..|+.++|+|||||||||++++|.+.+.+..|.+.+.+...-... .....+++. |.... ...++..++.
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLR 246 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHH
Confidence 344678899999999999999999999999999988888887653211111 233345554 43222 2334556552
Q ss_pred HHHhcCCCCCCCCceEEEEeCCCCHH
Q psy12735 119 RAVNKPLDPGSKERKYILFDGDVDAL 144 (233)
Q Consensus 119 ~~~~~~~~~~~~~~~~lvlDep~~~~ 144 (233)
..+ .+.|+.++++|+....
T Consensus 247 ~~l-------~~~pd~~l~~e~r~~~ 265 (361)
T 2gza_A 247 SCL-------RMKPTRILLAELRGGE 265 (361)
T ss_dssp HHT-------TSCCSEEEESCCCSTH
T ss_pred HHH-------hcCCCEEEEcCchHHH
Confidence 222 1478899999998754
No 83
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.93 E-value=8.3e-10 Score=89.10 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
+..|+.++|+|||||||||+++++++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788899999999999999999998654
No 84
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.91 E-value=6.2e-10 Score=103.21 Aligned_cols=104 Identities=14% Similarity=-0.030 Sum_probs=56.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCC------cccccccccccccCCCCcCc-hhHHHHHHH---HHh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNP------KAVSVIELYGVLNPETRDWY-DGLLSNIFR---AVN 122 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~------~~~~~~~l~g~~~~~~~~~~-~gi~~~~~~---~~~ 122 (233)
.++|+|||||||||++++|+|...+ ..|.+...+.+. ........+|++.|....+. ..+.+++.. ...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999866 567665544331 11223455677766543322 233333321 111
Q ss_pred cCCCC-----------CCCCceEEEEeCC------CCHHhHHhHHHHhhccc
Q psy12735 123 KPLDP-----------GSKERKYILFDGD------VDALWIENMNSVMDDNK 157 (233)
Q Consensus 123 ~~~~~-----------~~~~~~~lvlDep------~~~~~~~~l~~~l~~~~ 157 (233)
....+ ....|+++++|+| ++++|......+.+...
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 11100 0136899999999 88888776655555433
No 85
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.91 E-value=6.7e-10 Score=106.95 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+....+|+|..+++ .+++........|++++||||++++|+.....+++..+.+.-. | ..+++.+||+.
T Consensus 859 ~~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G--------~TVIvisHdl~ 927 (993)
T 2ygr_A 859 QPAPTLSGGEAQRV--KLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-G--------NTVIVIEHNLD 927 (993)
T ss_dssp CCGGGSCHHHHHHH--HHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECCCHH
T ss_pred CccccCCHHHHHHH--HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEcCCHH
Confidence 33456788888888 5555444111247999999999999999988888766555433 3 46666677776
Q ss_pred cc
Q psy12735 184 YA 185 (233)
Q Consensus 184 ~~ 185 (233)
.+
T Consensus 928 ~i 929 (993)
T 2ygr_A 928 VI 929 (993)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 86
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.91 E-value=3.3e-09 Score=100.51 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=63.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh-hcCCCeEEeeeCCcccc-ccccccc---ccCCCCcCchhHHHHHHHHHhcCC-
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST-VLGYPARTYTLNPKAVS-VIELYGV---LNPETRDWYDGLLSNIFRAVNKPL- 125 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~-~~~~~i~~~~~~~~~~~-~~~l~g~---~~~~~~~~~~gi~~~~~~~~~~~~- 125 (233)
|+.++|+|||||||||++|++++... +..|.+... ....+. ..+++.. .+......+.++.+.+ +++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~--~la~il~ 651 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEME--EVALILK 651 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--SEEEECCCSEEEEECCC------CCSHHHHHHH--HHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--hccceeeHHHhhccCCHHHHHHhcccHHHHHHH--HHHHHHH
Confidence 67899999999999999999999763 333332100 000000 0012111 1111122344554444 222221
Q ss_pred -CCCCCCceEEEEeCC---CCHHhHHhH-HHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 126 -DPGSKERKYILFDGD---VDALWIENM-NSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 126 -~~~~~~~~~lvlDep---~~~~~~~~l-~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+ .+|+++++||| ++++|.... ..+++.... . +..+++.||+...+
T Consensus 652 ~a---~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~---------g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 652 EA---TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---R---------RAYTLFATHYFELT 701 (765)
T ss_dssp HC---CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---H---------TCEEEEECCCHHHH
T ss_pred hc---cCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---C---------CCEEEEEeCCHHHH
Confidence 2 48999999999 999998775 345554322 1 25667777765543
No 87
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.89 E-value=2.2e-09 Score=103.49 Aligned_cols=123 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh--hhcCCCe--EEeeeCCcccccccccccccCCCCcCchhHHHHHHH-HHhcC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS--TVLGYPA--RTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFR-AVNKP 124 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~--~~~~~~i--~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~-~~~~~ 124 (233)
..|+.++|+|||||||||++|+++... ...|..+ ....+.. .......+|..+......+.+..+.... .+.+.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~-~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSI-VDCILARVGAGDSQLKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEEC-CSEEEEECC---------CHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchH-HHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh
Confidence 346779999999999999999994321 1122211 1001100 0001111222221122233333332210 22222
Q ss_pred CCCCCCCceEEEEeCCCCHHhHHhHHHHh-hccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 125 LDPGSKERKYILFDGDVDALWIENMNSVM-DDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~~~~~~~~l~~~l-~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+ .+|.+++||||+.++|+.....+. .....+....| ..+++.||+...+
T Consensus 739 -a---~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g--------~~vl~aTH~~el~ 788 (934)
T 3thx_A 739 -A---TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG--------AFCMFATHFHELT 788 (934)
T ss_dssp -C---CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTC--------CEEEEEESCGGGG
T ss_pred -c---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC--------CEEEEEcCcHHHH
Confidence 2 478999999999999886554442 11122221112 6777788876644
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.89 E-value=3.8e-10 Score=102.95 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=76.5
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe-eeCCc--------c--cccc-----cccccccCCCCcCch
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY-TLNPK--------A--VSVI-----ELYGVLNPETRDWYD 111 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~-~~~~~--------~--~~~~-----~l~g~~~~~~~~~~~ 111 (233)
.+..|+.++|+||||||||||++.+++...+.|.++.+. ...+. . .+.. .++.+.+..+..++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 467788899999999999999999999887766554322 11110 0 0100 112233444566788
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHH-----hHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIE-----NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~-----~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
|..+++..+.+.. .+|+++++| |++++|.. ....+.+..+.+.-. | ..+++.+|+.
T Consensus 357 g~~q~~~~a~~l~-----~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g--------~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEIND-----FKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-E--------ITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHT-----TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-T--------CEEEEEEECS
T ss_pred HHHHHHHHHHHHh-----hCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-C--------CEEEEEECcc
Confidence 9988885444332 489999999 99999987 555554443333222 2 4566666665
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.86 E-value=1.6e-09 Score=86.01 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=28.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL 88 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~ 88 (233)
|+.++|+|||||||||++++|++.+. ..| +.+.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~ 35 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGF 35 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCE
Confidence 46799999999999999999999987 555 655443
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.84 E-value=2.5e-09 Score=102.66 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc
Q psy12735 105 ETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY 184 (233)
Q Consensus 105 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~ 184 (233)
....+|+|..+++ .+++........|++++||||++++|+.....+++..+.+.-. | ..+++.+||+..
T Consensus 842 ~~~~LSGGekQRv--~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G--------~TVIvisHdl~~ 910 (972)
T 2r6f_A 842 PATTLSGGEAQRV--KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-G--------DTVLVIEHNLDV 910 (972)
T ss_dssp CGGGCCHHHHHHH--HHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-T--------CEEEEECCCHHH
T ss_pred chhhCCHHHHHHH--HHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-C--------CEEEEEcCCHHH
Confidence 3456788888888 5555443111247999999999999999988888776655433 3 466677777765
Q ss_pred c
Q psy12735 185 A 185 (233)
Q Consensus 185 ~ 185 (233)
+
T Consensus 911 i 911 (972)
T 2r6f_A 911 I 911 (972)
T ss_dssp H
T ss_pred H
Confidence 4
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.81 E-value=1.2e-09 Score=99.73 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=70.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHH--HHhhhhhcCCCeEEeeeCCcc--cccccccccccCCC-----------------C
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINA--LVKTSTVLGYPARTYTLNPKA--VSVIELYGVLNPET-----------------R 107 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~--L~~~~~~~~~~i~~~~~~~~~--~~~~~l~g~~~~~~-----------------~ 107 (233)
+..|+.++|+||||||||||+++ ++|+..+..+.+.+.+..... ......+|++.|.. .
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 34566699999999999999999 679888777777765543210 00011123221110 0
Q ss_pred -cC-chhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCH-----HhHHhHHHHhhccccccccCceEEEccCcceEEEEeC
Q psy12735 108 -DW-YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDA-----LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG 180 (233)
Q Consensus 108 -~~-~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~-----~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~ 180 (233)
.. .-|+...+.+.....+. .+++.+++|+|++. +|+.....+++..+.+... | ..+++.+|
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~---g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g--------~tvl~itH 183 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQK---YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-G--------ATTVMTTE 183 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHH---HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-T--------CEEEEEEE
T ss_pred hhhcccCHHHHHHHHHHHHHH---cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-C--------CEEEEEec
Confidence 00 11232222111112222 36889999999864 3666666666554444322 3 57777778
Q ss_pred CcCcc
Q psy12735 181 DLQYA 185 (233)
Q Consensus 181 dl~~~ 185 (233)
++..+
T Consensus 184 ~~~~~ 188 (525)
T 1tf7_A 184 RIEEY 188 (525)
T ss_dssp CSSSS
T ss_pred CCCCc
Confidence 87765
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.78 E-value=1.1e-08 Score=79.81 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=26.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhc
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVL 79 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~ 79 (233)
..++.++|+||||+||||+++++++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999999999988643
No 93
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.77 E-value=1e-07 Score=80.38 Aligned_cols=136 Identities=22% Similarity=0.253 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC--cccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP--KAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~--~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
..+.|+||+|+||||+++.+++.....++++....... ......+++|........-..|.+...++. .
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~ 118 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---------R 118 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH---------C
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh---------C
Confidence 57999999999999999999998766555554433221 111123344433221111111444433322 2
Q ss_pred CceEEEEeCCCCHHhHHhHHH---HhhccccccccCceEEEccCcceEEEEeCC--------------------------
Q psy12735 131 ERKYILFDGDVDALWIENMNS---VMDDNKILTLANGERIRLLAHCQLLFEVGD-------------------------- 181 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~~~l~~---~l~~~~~l~l~~g~~i~~~~~~~~i~et~d-------------------------- 181 (233)
...++++||. +.+..+.++. +++.. ......+..+... +..+|+.+..
T Consensus 119 ~~~vl~lDEi-~~l~~~~~~~Ll~~le~~-~~~~~~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~ 195 (311)
T 4fcw_A 119 PYSVILFDAI-EKAHPDVFNILLQMLDDG-RLTDSHGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL 195 (311)
T ss_dssp SSEEEEEETG-GGSCHHHHHHHHHHHHHS-EEECTTSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred CCeEEEEeCh-hhcCHHHHHHHHHHHhcC-EEEcCCCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence 4579999996 3333333333 44432 2222334444433 3346666554
Q ss_pred cCccChhhhhcc-eEEEECC
Q psy12735 182 LQYASPATVSRA-GMVYVDP 200 (233)
Q Consensus 182 l~~~sPa~isr~-~~v~~~~ 200 (233)
.....|++++|| .++.+.+
T Consensus 196 ~~~~~~~l~~R~~~~~~~~p 215 (311)
T 4fcw_A 196 QQHFRPEFLNRLDEIVVFRP 215 (311)
T ss_dssp HHHSCHHHHTTCSEEEECCC
T ss_pred HHhCCHHHHhcCCeEEEeCC
Confidence 346789999999 5666655
No 94
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.76 E-value=5.6e-10 Score=95.38 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=29.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY 81 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~ 81 (233)
+..+..++|+||||||||||+++|++.+.+..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 466889999999999999999999999987654
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.75 E-value=1.1e-08 Score=86.17 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=33.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEee
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYT 87 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~ 87 (233)
-.+..|+.++|+|||||||||+++.+++...+..| .+.+..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35677888999999999999999999998877644 665543
No 96
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.75 E-value=1.5e-08 Score=88.40 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=47.2
Q ss_pred CcCchhHHHHHH--HHHh--cCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 107 RDWYDGLLSNIF--RAVN--KPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 107 ~~~~~gi~~~~~--~~~~--~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
..+|+|..+++. +.++ +... .+|++++||||++++|+.....+++..+.+.-. | ..+++.+||+
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~---~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g--------~tvi~itH~~ 345 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVAS---GRLDAFFIDEGFSSLDTENKEKIASVLKELERL-N--------KVIVFITHDR 345 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTT---TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-S--------SEEEEEESCH
T ss_pred hhCCHHHHHHHHHHHHHHhhhccc---CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-C--------CEEEEEecch
Confidence 357888888873 2221 1111 489999999999999999998888766655422 3 5778888888
Q ss_pred Ccc
Q psy12735 183 QYA 185 (233)
Q Consensus 183 ~~~ 185 (233)
..+
T Consensus 346 ~~~ 348 (365)
T 3qf7_A 346 EFS 348 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=2.3e-08 Score=76.21 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
.++.++|+||+|||||||++++++.+.+.|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999887644
No 98
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.71 E-value=1.7e-08 Score=86.43 Aligned_cols=79 Identities=10% Similarity=-0.089 Sum_probs=49.4
Q ss_pred CcCchhHHHHHHHHHhcCCCC-CCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 107 RDWYDGLLSNIFRAVNKPLDP-GSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 107 ~~~~~gi~~~~~~~~~~~~~~-~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
..+++|..+++ .+++..+. ....|++++||||++++|+.....+++..+.+. .+ ..+++.+|+...+
T Consensus 218 ~~lS~Gq~q~v--~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~--------~~vi~~tH~~~~~ 285 (322)
T 1e69_A 218 SLLSGGEKALV--GLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KH--------TQFIVITHNKIVM 285 (322)
T ss_dssp GGSCHHHHHHH--HHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TT--------SEEEEECCCTTGG
T ss_pred hhCCHHHHHHH--HHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CC--------CeEEEEECCHHHH
Confidence 35677888877 33332210 013679999999999999998888877655432 22 5677778885433
Q ss_pred ChhhhhcceEEEEC
Q psy12735 186 SPATVSRAGMVYVD 199 (233)
Q Consensus 186 sPa~isr~~~v~~~ 199 (233)
. ...||-.+.+.
T Consensus 286 ~--~~d~~~~v~~~ 297 (322)
T 1e69_A 286 E--AADLLHGVTMV 297 (322)
T ss_dssp G--GCSEEEEEEES
T ss_pred h--hCceEEEEEEe
Confidence 2 23566445554
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.71 E-value=1.3e-07 Score=80.33 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=36.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
.++.++|+|||||||||+++.|++.+.+.++.+.+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 4678999999999999999999999999999998877664
No 100
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.69 E-value=2.6e-08 Score=94.87 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.|+.++|+|||||||||++|++++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 56789999999999999999999864
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.65 E-value=2.8e-08 Score=83.17 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=25.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
+..|+.++|+|||||||||+++.+++...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46788899999999999999999998654
No 102
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.65 E-value=8.2e-09 Score=79.56 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=32.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+..|+.++|+||||||||||+|+++|.+ +..|.+.+.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 4667779999999999999999999999 7777776544
No 103
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.65 E-value=8.1e-08 Score=82.73 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=49.9
Q ss_pred CcCchhHHHHHH--H--HHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc
Q psy12735 107 RDWYDGLLSNIF--R--AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 107 ~~~~~gi~~~~~--~--~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
..+++|..+++. + .+++... .+|++++||||++++|+.....+++....+.- .| ..+++.+||.
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~---~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~--------~~vi~~sH~~ 314 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIMERYLK-KI--------PQVILVSHDE 314 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTT---TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GS--------SEEEEEESCG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhc---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC--------CEEEEEEChH
Confidence 457889888541 1 3334443 57999999999999999998887776544322 23 4677778885
Q ss_pred CccChhhhhcceEEEE
Q psy12735 183 QYASPATVSRAGMVYV 198 (233)
Q Consensus 183 ~~~sPa~isr~~~v~~ 198 (233)
... ....|+..+..
T Consensus 315 ~~~--~~~d~~~~l~~ 328 (339)
T 3qkt_A 315 ELK--DAADHVIRISL 328 (339)
T ss_dssp GGG--GGCSEEEEEEE
T ss_pred HHH--HhCCEEEEEEe
Confidence 432 23345444443
No 104
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.64 E-value=1.7e-08 Score=98.32 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhc---CCCeEEeeeCCccccc-cccc---cccc---CCCCcCchhHHHHHHHHH
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVL---GYPARTYTLNPKAVSV-IELY---GVLN---PETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~---~~~i~~~~~~~~~~~~-~~l~---g~~~---~~~~~~~~gi~~~~~~~~ 121 (233)
|+.++|+|||||||||++|.+ |+.... |.-+-- ....++. ..++ |.-+ .....+..++.. + .+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq---~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~--a~ 861 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA---EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE-T--AS 861 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES---SEEEECCCSBEEEECC---------CHHHHHHHH-H--HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc---CcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-H--HH
Confidence 678999999999999999999 776432 211110 0001111 1112 2111 111223334333 2 11
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHh-HHHHhhccccccccCceEEEccCcceEEEEeCCcCcc
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIEN-MNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYA 185 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~-l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~ 185 (233)
+...+ .+|.+++||||+.+.|+.. ...+......+.-..| .+++|.||++..+
T Consensus 862 al~la---~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g--------~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 862 ILMHA---TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK--------CRTLFSTHYHSLV 915 (1022)
T ss_dssp HHHHC---CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC--------CEEEEECCCHHHH
T ss_pred HHHhC---CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC--------CEEEEEeCCHHHH
Confidence 22222 4799999999988776554 2222222222221112 5777777777654
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.62 E-value=4.2e-08 Score=84.97 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.6
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..|+.+.|+||||||||||++.+++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999999976
No 106
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=4.8e-07 Score=77.66 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=74.9
Q ss_pred HHHHHHhhcce--EEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHH
Q psy12735 44 QMYETMLTRHS--TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 44 ql~~~l~~~~~--v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~ 121 (233)
.+...+..++. +++.||+|+||||+++++++.+...++...+..++... ..| .+-+.+ .+..+
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-----~~~---------~~~ir~-~i~~~ 100 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-----DRG---------IDVVRN-QIKDF 100 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-----CCS---------HHHHHT-HHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-----ccc---------HHHHHH-HHHHH
Confidence 34455666665 89999999999999999999875433333333333211 000 011111 22222
Q ss_pred hcCCCCCCCCceEEEEeCC--CCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEEC
Q psy12735 122 NKPLDPGSKERKYILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVD 199 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep--~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~ 199 (233)
.+.........+++++||. .+......+...+++. +.+..+++.+.....+.|+..|||..+.+.
T Consensus 101 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 101 ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCccccchhHHhhceeEecc
Confidence 2111000124799999986 2332223333333321 224667777788888999999999988887
Q ss_pred CC
Q psy12735 200 PI 201 (233)
Q Consensus 200 ~~ 201 (233)
+-
T Consensus 168 ~l 169 (340)
T 1sxj_C 168 PL 169 (340)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 107
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.59 E-value=1.4e-08 Score=82.07 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=27.2
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
+..|+.++|+||||||||||+++|++.+ + |.+.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 3445569999999999999999999988 4 56655
No 108
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.59 E-value=4.2e-07 Score=81.79 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=35.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
..++.++|+|+|||||||+++.|++.+.+.+|.+.+.+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 35678999999999999999999999998899998866554
No 109
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.58 E-value=4.4e-08 Score=84.47 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
..+..+..++|+||||||||||++.|++.+.+.++.+.+.+.++..
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 3456788899999999999999999999999989999988887744
No 110
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.57 E-value=2.3e-07 Score=85.85 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 43 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 43 ~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
-++...+..++.++|+||||+||||+++++++...+..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 34556778899999999999999999999999876543
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.57 E-value=2e-06 Score=67.96 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=68.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.|.||+|+||||+++.++..+...+....+..++... ..........+........-....+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---------------ERGIDVVRHKIKEFARTAPIGGAPFK 104 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---------------TTCHHHHHHHHHHHHTSCCSTTCSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---------------ccChHHHHHHHHHHhcccCCCccCce
Confidence 499999999999999999987653322111111111100 00111122222233222111124688
Q ss_pred EEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 134 YILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 134 ~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
++++||.- +....+.+..+++.. ..+..+++.+.......|++.+||..+.+.+-.
T Consensus 105 vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 105 IIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred EEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 99999852 233333344444331 234677887878888899999999998887643
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.57 E-value=5.2e-08 Score=77.90 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=28.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+..|+.++|+|||||||||+++.+++ ..++.+.+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 45678899999999999999999998 3355554443
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.56 E-value=2.5e-07 Score=84.04 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 45 MYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 45 l~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+...+..|..++|+|||||||||++++|++.+.+..+.+.+.+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 4456788999999999999999999999999988777776654
No 114
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.55 E-value=9.1e-08 Score=87.56 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=68.5
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
.+..++|+||||+||||+++++++...+..+.+...+.. ...+++|... .|.+-....+...+.... .
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~----~~~~~~g~~~----~~ig~~~~~~~~~~~~a~----~ 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR----DESEIRGHRR----TYVGAMPGRIIQGMKKAG----K 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------------------CHHHHHHTTC----S
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc----hhhhhhhHHH----HHhccCchHHHHHHHHhh----c
Confidence 367899999999999999999999874322222111111 1112222211 111111111211222221 1
Q ss_pred CceEEEEeCCCCHHhH------HhHHHHhhcccccc-ccCceEEEcc-CcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 131 ERKYILFDGDVDALWI------ENMNSVMDDNKILT-LANGERIRLL-AHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 131 ~~~~lvlDep~~~~~~------~~l~~~l~~~~~l~-l~~g~~i~~~-~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
...++++||.-.-... ..+-.+++....-. ...+....+. .++.++.-+..+..+.|++.+||-++++.+-.
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 3338999996321111 12222333211111 1111111111 45778887888889999999999999887643
No 115
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.55 E-value=2.6e-06 Score=68.02 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC--c--cc---ccccccccccCCCCcCchhHHHHHHHHHhcCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP--K--AV---SVIELYGVLNPETRDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~--~--~~---~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~ 125 (233)
+.+.|.||+|+||||+++.+++........... .... . .+ ...+++... ..... .......++..+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCGVCDNCREIEQGRFVDLIEID-AASRT-KVEDTRDLLDNVQYAP 122 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-CCSCSHHHHHHHTTCCSSEEEEE-TTCGG-GHHHHHHHHHSCCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCcccHHHHHHhccCCcceEEec-Ccccc-cHHHHHHHHHHhhhch
Confidence 378999999999999999998765432211100 0000 0 00 000111111 10001 1112222322222111
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCC-c
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINL-G 204 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~-~ 204 (233)
. ...+.++++||.-. ++.+.++.++..... .+.+..+++.+++...+.|++.+||..+.+.+-.. .
T Consensus 123 ~--~~~~~vlviDe~~~-l~~~~~~~l~~~l~~----------~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e 189 (250)
T 1njg_A 123 A--RGRFKVYLIDEVHM-LSRHSFNALLKTLEE----------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 189 (250)
T ss_dssp S--SSSSEEEEEETGGG-SCHHHHHHHHHHHHS----------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred h--cCCceEEEEECccc-ccHHHHHHHHHHHhc----------CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHH
Confidence 1 23678999999622 222333333322111 12357888888888888999999999999987433 3
Q ss_pred chHHHHHHHh
Q psy12735 205 YQPYWTRWVN 214 (233)
Q Consensus 205 ~~~~~~swl~ 214 (233)
...++...+.
T Consensus 190 ~~~~l~~~~~ 199 (250)
T 1njg_A 190 IRHQLEHILN 199 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444544443
No 116
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.53 E-value=6.5e-08 Score=82.23 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 43 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 43 ~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
-.+.-.+.+|+.++|+||||||||||+++|+|++ .|.+.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~ 155 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL 155 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE
Confidence 3455678899999999999999999999999998 55553
No 117
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.53 E-value=4e-08 Score=78.57 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.+..|+.++|+||||||||||+|+|+|.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 678899999999999999999999999874
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.48 E-value=4.5e-07 Score=80.33 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 27 ~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
++++++.. +....+.++ ....+..++|+|||||||||+++++.+.+.+..+.+.+..-+
T Consensus 146 l~~Lg~~~--~~~~~L~~l--~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 146 LHSLGMTA--HNHDNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp GGGSCCCH--HHHHHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred HHHcCCCH--HHHHHHHHH--HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 45566544 222222233 235677899999999999999999999998878888776543
No 119
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=6.6e-08 Score=76.94 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=23.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..++.++|+||||||||||+++|.+.+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678899999999999999999999874
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.46 E-value=6.4e-06 Score=71.12 Aligned_cols=148 Identities=10% Similarity=0.060 Sum_probs=78.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhc-CCCeEEeeeCCcccccccc-------cccccCCCCcCchhHHHHHHHHHhcCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIEL-------YGVLNPETRDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~-~~~i~~~~~~~~~~~~~~l-------~g~~~~~~~~~~~gi~~~~~~~~~~~~ 125 (233)
.++|.||+|+||||+++.+++..... +..+....... ..+...+ +|........-...++..+...+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-- 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE-- 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--
Confidence 79999999999999999999877554 22222222111 1111111 1111010011112233333322222
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc---CccChhhhhcce--EEEECC
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL---QYASPATVSRAG--MVYVDP 200 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl---~~~sPa~isr~~--~v~~~~ 200 (233)
...+.++++||+... +.+.+..++.....+.-.. ..++.+|+.+++. ....|...+||. .+.+.+
T Consensus 123 ---~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~------~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 123 ---RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLG------AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp ---TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHS------SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred ---cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCC------cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 135889999997433 4444444443322111000 0246788888877 667888889998 588876
Q ss_pred CCC-cchHHHHHHHh
Q psy12735 201 INL-GYQPYWTRWVN 214 (233)
Q Consensus 201 ~~~-~~~~~~~swl~ 214 (233)
-.. ....++...+.
T Consensus 193 l~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 193 YTKDQIFDILLDRAK 207 (389)
T ss_dssp CBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 433 23444444443
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.45 E-value=1.1e-07 Score=77.11 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=24.2
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
+..|+.++|+|||||||||+++.+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456788999999999999999999984
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.43 E-value=2.5e-07 Score=78.68 Aligned_cols=39 Identities=18% Similarity=0.014 Sum_probs=33.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhh--hcCCCeEEeee
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTST--VLGYPARTYTL 88 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~--~~~~~i~~~~~ 88 (233)
..+..++|+|||||||||++++|++.+. +.+|.+.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~ 118 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITT 118 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 5678899999999999999999999987 77888887433
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=4.2e-06 Score=69.58 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=73.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
....++.|.||+|+||||+++.+++... .++. .++. .++.+.+. .. .......++.....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~~--~v~~-----~~~~~~~~---~~-~~~~~~~~~~~~~~------ 108 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN---ATFI--RVVG-----SELVKKFI---GE-GASLVKDIFKLAKE------ 108 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT---CEEE--EEEG-----GGGCCCST---TH-HHHHHHHHHHHHHH------
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEE--EEeh-----HHHHHhcc---ch-HHHHHHHHHHHHHH------
Confidence 4567899999999999999999988542 2221 1111 11211110 00 01122222222221
Q ss_pred CCceEEEEeCCCCH----------HhH---HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cce
Q psy12735 130 KERKYILFDGDVDA----------LWI---ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAG 194 (233)
Q Consensus 130 ~~~~~lvlDep~~~----------~~~---~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~ 194 (233)
..|.++++||.-.- .+. ..+..++........ ..++.+|..+.....+.|++.+ |+.
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--------~~~~~vI~ttn~~~~l~~~l~~~~Rf~ 180 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--------RGDVKIIGATNRPDILDPAILRPGRFD 180 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--------SSSEEEEEECSCGGGBCHHHHSTTSEE
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--------CCCEEEEEeCCCchhcCHHHcCCCcCC
Confidence 36789999986321 122 233333332211111 2347788888888899999988 886
Q ss_pred -EEEECCCCC-cchHHHHHHHh
Q psy12735 195 -MVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 195 -~v~~~~~~~-~~~~~~~swl~ 214 (233)
.+++..-.. ....++...+.
T Consensus 181 ~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 181 RIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp EEEECCCCCHHHHHHHHHHHHT
T ss_pred eEEEECCCCHHHHHHHHHHHHh
Confidence 566654332 23344554444
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.1e-06 Score=75.12 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHhhc--ceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHH
Q psy12735 44 QMYETMLTR--HSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA 120 (233)
Q Consensus 44 ql~~~l~~~--~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~ 120 (233)
++...+..+ ..+.|.||+|+||||+++.+++.+.. ......+..+++..... .+.+ ......
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~~~~------------~~~~~~ 112 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG---ISIV------------REKVKN 112 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC---HHHH------------TTHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc---hHHH------------HHHHHH
Confidence 344555555 45999999999999999999987642 11122223333321100 0000 000011
Q ss_pred HhcCCC----------CCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhh
Q psy12735 121 VNKPLD----------PGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATV 190 (233)
Q Consensus 121 ~~~~~~----------~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~i 190 (233)
+..... .....++++++|| .+.+.....+.++...... +.+.++++.+++.....|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l~~~~~~~Ll~~le~~----------~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 113 FARLTVSKPSKHDLENYPCPPYKIIILDE-ADSMTADAQSALRRTMETY----------SGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGSCHHHHHHHHHHHHHT----------TTTEEEEEEESCGGGSCHHHH
T ss_pred HhhhcccccchhhcccCCCCCceEEEEEC-CCccCHHHHHHHHHHHHhc----------CCCceEEEEeCchhhCcchhh
Confidence 110000 0012568999999 4444444433333221110 124678888888888999999
Q ss_pred hcceEEEECCC
Q psy12735 191 SRAGMVYVDPI 201 (233)
Q Consensus 191 sr~~~v~~~~~ 201 (233)
+||..+.+.+-
T Consensus 182 sR~~~i~~~~~ 192 (353)
T 1sxj_D 182 SQCSKFRFKAL 192 (353)
T ss_dssp HHSEEEECCCC
T ss_pred ccCceEEeCCC
Confidence 99998888763
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.41 E-value=1.1e-07 Score=75.22 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=25.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..|+.++|+|||||||||++++|++.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578889999999999999999999986
No 126
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.40 E-value=1.9e-07 Score=74.69 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=27.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
..++.++|+||||||||||+++|++.+.+.|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4577899999999999999999999998653
No 127
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.38 E-value=1e-06 Score=75.32 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=42.6
Q ss_pred CceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-ccChhhhhcceE-EEECCC
Q psy12735 131 ERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-YASPATVSRAGM-VYVDPI 201 (233)
Q Consensus 131 ~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-~~sPa~isr~~~-v~~~~~ 201 (233)
.+.++++||.- +......+..+++.........|.....+.++.++.-+.... ...|++.+||++ +++.+-
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSP 218 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCC
Confidence 36799999963 333334444445443222223444445555667777554323 688999999988 778764
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.37 E-value=2.9e-07 Score=79.06 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=36.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
.++.++|+|||||||||+++.|++.+.+.++.+.+.+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 47789999999999999999999999999999988877653
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.36 E-value=6.8e-06 Score=69.03 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=70.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCC--CeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGY--PARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~--~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
+..+.|.||+|+|||++++.++..+...+. ...+..++.. ++.+ .+.+.....+...+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~l~~-------~~~g~~~~~~~~~~~~------ 128 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-----DLVG-------QYIGHTAPKTKEVLKR------ 128 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-----GTCC-------SSTTCHHHHHHHHHHH------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-----Hhhh-------hcccccHHHHHHHHHh------
Confidence 346999999999999999999987754332 1112222221 1211 1111111111111111
Q ss_pred CCceEEEEeCCC-----------CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-----ccChhhhhcc
Q psy12735 130 KERKYILFDGDV-----------DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-----YASPATVSRA 193 (233)
Q Consensus 130 ~~~~~lvlDep~-----------~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-----~~sPa~isr~ 193 (233)
..+.++++||.- +......+..+++.. ..++.+|+.+.... ...|++.+||
T Consensus 129 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~ 195 (309)
T 3syl_A 129 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGFRSRI 195 (309)
T ss_dssp HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTHHHHE
T ss_pred cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHHHHhC
Confidence 135699999863 222222333333331 12456666553221 2359999999
Q ss_pred -eEEEECCCCC-cchHHHHHHHhh
Q psy12735 194 -GMVYVDPINL-GYQPYWTRWVNL 215 (233)
Q Consensus 194 -~~v~~~~~~~-~~~~~~~swl~~ 215 (233)
..+++.+-.- ....++..++..
T Consensus 196 ~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 196 AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7888886543 344566666653
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.36 E-value=3.7e-06 Score=70.86 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=70.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
..++.|.||+|+|||++.+.++..+ +.++.. ++ ..++.+.+. .. ..+....+++....... ...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~--v~-----~~~l~~~~~---g~-~~~~i~~~f~~a~~~~~--~~~ 99 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIM--MS-----AGELESGNA---GE-PAKLIRQRYREAAEIIR--KGN 99 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEE--EE-----HHHHHCC------H-HHHHHHHHHHHHHHHHT--TSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEE--Ee-----HHHhhhccC---ch-hHHHHHHHHHHHHHHHh--cCC
Confidence 3468888999999999999999865 333222 11 111211000 00 11222223332211000 146
Q ss_pred ceEEEEeCCCCH--------H-------hHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhh--hcce
Q psy12735 132 RKYILFDGDVDA--------L-------WIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATV--SRAG 194 (233)
Q Consensus 132 ~~~lvlDep~~~--------~-------~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~i--sr~~ 194 (233)
|.++++||--.. . ....+..+++......+.+.....-..++.+|..|.+...+.|+++ +|+-
T Consensus 100 ~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d 179 (293)
T 3t15_A 100 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRME 179 (293)
T ss_dssp CCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEE
T ss_pred CeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCc
Confidence 889999996210 0 1123344444322222222222333456888888889999999988 5776
Q ss_pred EEEECCCCCcchHHHHHHHh
Q psy12735 195 MVYVDPINLGYQPYWTRWVN 214 (233)
Q Consensus 195 ~v~~~~~~~~~~~~~~swl~ 214 (233)
..+.-|+.-.-..++...+.
T Consensus 180 ~~i~~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 180 KFYWAPTREDRIGVCTGIFR 199 (293)
T ss_dssp EEEECCCHHHHHHHHHHHHG
T ss_pred eeEeCcCHHHHHHHHHHhcc
Confidence 64444432233344444443
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=1.3e-05 Score=64.34 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=69.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
.+..+.|.||+|+||||+++.++......+..+.+.... ++..... ..++.+ .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-------~~~~~~~------------~~~~~~--------~ 103 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-------IHASIST------------ALLEGL--------E 103 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-------GGGGSCG------------GGGTTG--------G
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-------HHHHHHH------------HHHHhc--------c
Confidence 467899999999999999999998776555544433221 1111000 000011 2
Q ss_pred CceEEEEeCCCC----HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCC----cCccChhhhhcc---eEEEEC
Q psy12735 131 ERKYILFDGDVD----ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGD----LQYASPATVSRA---GMVYVD 199 (233)
Q Consensus 131 ~~~~lvlDep~~----~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~d----l~~~sPa~isr~---~~v~~~ 199 (233)
.+.++++||.-. ..+.+.+..+++... ..+ ..++++.++. +....|++.+|| ..+.+.
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~----~~~-------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~ 172 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVA----EQK-------RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ 172 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHH----HHC-------SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHH----HcC-------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC
Confidence 578999999532 111333333333211 111 1235555542 224558899999 888888
Q ss_pred CCCC-cchHHHHHHHh
Q psy12735 200 PINL-GYQPYWTRWVN 214 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~ 214 (233)
+-.. ....++...+.
T Consensus 173 ~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 173 PMMDDEKLAALQRRAA 188 (242)
T ss_dssp CCCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7544 33455555544
No 132
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.35 E-value=3.8e-05 Score=65.75 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=83.6
Q ss_pred HHHHHHhhc---ceEEEEcCCCCChHHHHHHHHhhhhhcCCCe-EEeeeCCcc-----cccccccccccCC--CCcCchh
Q psy12735 44 QMYETMLTR---HSTMIVGPTGGGKSVVINALVKTSTVLGYPA-RTYTLNPKA-----VSVIELYGVLNPE--TRDWYDG 112 (233)
Q Consensus 44 ql~~~l~~~---~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i-~~~~~~~~~-----~~~~~l~g~~~~~--~~~~~~g 112 (233)
++...++.+ +...+.||+|+||||+.+.+++.+....... ...+....+ ....++. .++.. .....-.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~-~~~~~~~~~~~~i~ 91 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY-TLAPEKGKNTLGVD 91 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE-EECCCTTCSSBCHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EEeccccCCCCCHH
Confidence 334455544 3589999999999999999998664221100 000000000 0000111 11111 0111111
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhc
Q psy12735 113 LLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSR 192 (233)
Q Consensus 113 i~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr 192 (233)
....+...+..... ....+++++||.- .+..+..+.++..... -+.+..+|+.+++.+.+-|+..||
T Consensus 92 ~ir~l~~~~~~~~~--~~~~kvviIdead-~l~~~a~naLLk~lEe----------p~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 92 AVREVTEKLNEHAR--LGGAKVVWVTDAA-LLTDAAANALLKTLEE----------PPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp HHHHHHHHTTSCCT--TSSCEEEEESCGG-GBCHHHHHHHHHHHTS----------CCTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHhhccc--cCCcEEEEECchh-hcCHHHHHHHHHHhcC----------CCCCeEEEEEeCChHhCcHHHhhc
Confidence 22233333322111 2368999999852 2233344444432211 123578888899999999999999
Q ss_pred ceEEEECCCCCcchHHHHHHHhhcc
Q psy12735 193 AGMVYVDPINLGYQPYWTRWVNLNV 217 (233)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~swl~~~~ 217 (233)
|..+.+.+-. ..-+..|+..+-
T Consensus 159 c~~~~~~~~~---~~~~~~~L~~~~ 180 (334)
T 1a5t_A 159 CRLHYLAPPP---EQYAVTWLSREV 180 (334)
T ss_dssp SEEEECCCCC---HHHHHHHHHHHC
T ss_pred ceeeeCCCCC---HHHHHHHHHHhc
Confidence 9999998643 345667887553
No 133
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.34 E-value=1.1e-07 Score=78.14 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+..++|+|||||||||++++|++.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344459999999999999999999976
No 134
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=3.2e-07 Score=72.01 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
++.++|+|||||||||++++|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999999876
No 135
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.28 E-value=1.3e-05 Score=65.60 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=73.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
....++.|.||+|+||||+++.++... +.+... ++.. ++...+.. ........++.....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~--~~~~-----~~~~~~~~----~~~~~~~~~~~~a~~------ 96 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLA--MAGA-----EFVEVIGG----LGAARVRSLFKEARA------ 96 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEE--EETT-----TTSSSSTT----HHHHHHHHHHHHHHH------
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE--echH-----HHHhhccC----hhHHHHHHHHHHHHh------
Confidence 345679999999999999999998854 223221 1111 11110000 011122222222221
Q ss_pred CCceEEEEeCCCCH--------------HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cc
Q psy12735 130 KERKYILFDGDVDA--------------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RA 193 (233)
Q Consensus 130 ~~~~~lvlDep~~~--------------~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~ 193 (233)
..+.++++||.-.- .....+..++....... ...++.++..+.....+.|++++ |+
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--------~~~~~~vi~~tn~~~~ld~~l~~~~R~ 168 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG--------TTDHVIVLASTNRADILDGALMRPGRL 168 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCC--------TTCCEEEEEEESCGGGGGSGGGSTTSC
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC--------CCCCEEEEecCCChhhcCHHHhcCCcC
Confidence 25789999997432 11122344443221110 12346777777777788888887 88
Q ss_pred -eEEEECCCCC-cchHHHHHHHhhc
Q psy12735 194 -GMVYVDPINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 194 -~~v~~~~~~~-~~~~~~~swl~~~ 216 (233)
..+++..-.. ....++..++...
T Consensus 169 ~~~i~i~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 169 DRHVFIDLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp CEEEECCSCCHHHHHHHHHHHHHHT
T ss_pred CeEEEeCCcCHHHHHHHHHHHHHhC
Confidence 5667665433 3345666666544
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.28 E-value=3.9e-07 Score=71.18 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=24.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.|+.++|+|||||||||+++.|.+.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999999765
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=3.2e-07 Score=71.84 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
+..|+.++|+|||||||||++++|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 567888999999999999999999997
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.28 E-value=4.2e-06 Score=71.97 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=75.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEeeeCCcc-cccccccc----cccCC--CCcC-chhHHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYTLNPKA-VSVIELYG----VLNPE--TRDW-YDGLLSNIFRAVN 122 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~~~~~~-~~~~~l~g----~~~~~--~~~~-~~gi~~~~~~~~~ 122 (233)
+..++|.||+|+||||+++.+++......+ ...+..++... .+...++. .+... .... ...+...+...+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999999987654321 11111122100 01111111 11000 0111 1223344433333
Q ss_pred cCCCCCCCCceEEEEeCCCCHHh---HHhHHHHhhccccccccCceEEEccCcceEEEEeCCc---CccChhhhhcc--e
Q psy12735 123 KPLDPGSKERKYILFDGDVDALW---IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL---QYASPATVSRA--G 194 (233)
Q Consensus 123 ~~~~~~~~~~~~lvlDep~~~~~---~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl---~~~sPa~isr~--~ 194 (233)
. ...+.++++||+....+ .+.+..++.....+ ...++.+|+.+++. ....|...+|| .
T Consensus 125 ~-----~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~ 190 (386)
T 2qby_A 125 D-----YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---------NKSKISFIGITNDVKFVDLLDPRVKSSLSEE 190 (386)
T ss_dssp T-----CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---------CC--EEEEEEESCGGGGGGCTTHHHHTTTTE
T ss_pred c-----cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---------CCCeEEEEEEECCCChHhhhCHHHhccCCCe
Confidence 2 13588999999754332 22333333221111 12346778888876 45678888999 5
Q ss_pred EEEECCCCC-cchHHHHHH
Q psy12735 195 MVYVDPINL-GYQPYWTRW 212 (233)
Q Consensus 195 ~v~~~~~~~-~~~~~~~sw 212 (233)
.+.+.+-.. ....++...
T Consensus 191 ~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHH
Confidence 788887543 233444443
No 139
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.28 E-value=3e-07 Score=82.69 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=32.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
+.++|+||||||||||+++|+|++.+..|.+.+.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4599999999999999999999999988888776544
No 140
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=2.4e-06 Score=65.83 Aligned_cols=35 Identities=14% Similarity=0.426 Sum_probs=26.5
Q ss_pred HHHHHHhh--cceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 44 QMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 44 ql~~~l~~--~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
++.+.+.. ...+.|+||+|+||||+++.++..+..
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444433 467999999999999999999887643
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.26 E-value=9.7e-06 Score=69.76 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=77.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhc----CCCeEEeeeCCccc-cccc----ccccccCC--CCcC-chhHHHHHH
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPARTYTLNPKAV-SVIE----LYGVLNPE--TRDW-YDGLLSNIF 118 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~----~~~i~~~~~~~~~~-~~~~----l~g~~~~~--~~~~-~~gi~~~~~ 118 (233)
.+..+.|.||+|+||||+++.++...... +....+..++.... +... ++..+... .... ...+...+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45679999999999999999998766432 11233322332111 1111 11111110 0111 122344443
Q ss_pred HHHhcCCCCCCCCceEEEEeCCCCHHh----HHhHHHHhhccccccccCceEEEccCcceEEEEeCCc---CccChhhhh
Q psy12735 119 RAVNKPLDPGSKERKYILFDGDVDALW----IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL---QYASPATVS 191 (233)
Q Consensus 119 ~~~~~~~~~~~~~~~~lvlDep~~~~~----~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl---~~~sPa~is 191 (233)
..+.. ...+.++++||.-.-.. .+.+..+++...... ...++.+|+.+++. ..+.|+..+
T Consensus 123 ~~l~~-----~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~I~~t~~~~~~~~l~~~l~~ 189 (387)
T 2v1u_A 123 KRLSR-----LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG--------DRVWVSLVGITNSLGFVENLEPRVKS 189 (387)
T ss_dssp HHHTT-----SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHHHT
T ss_pred HHHhc-----cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC--------CCceEEEEEEECCCchHhhhCHHHHh
Confidence 33322 13578999999754332 233333333221110 02356778877766 678899999
Q ss_pred cc--eEEEECCCCC-cchHHHHHHHh
Q psy12735 192 RA--GMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 192 r~--~~v~~~~~~~-~~~~~~~swl~ 214 (233)
|| ..+.+.+-.. .+..++...+.
T Consensus 190 r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 190 SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 99 5677776432 23344444443
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=9.4e-06 Score=68.25 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=71.4
Q ss_pred EEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCC-CCCce
Q psy12735 55 TMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPG-SKERK 133 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~ 133 (233)
+.|.||+|+||||+++.++..+...+....+..++... ...-+.....+..+....... ..++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~ 109 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---------------DRGIDVVRNQIKHFAQKKLHLPPGKHK 109 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---------------CCSHHHHHTHHHHHHHBCCCCCTTCCE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc---------------ccChHHHHHHHHHHHhccccCCCCCce
Confidence 99999999999999999988653211111111111100 000111222223332111111 12588
Q ss_pred EEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcchHHHHH
Q psy12735 134 YILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGYQPYWTR 211 (233)
Q Consensus 134 ~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~~~~~~s 211 (233)
++++||.- +......+...+++. +++..+++.+.+.....|++.+||..+.+.+-.. .-...
T Consensus 110 viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~---~~~~~ 173 (323)
T 1sxj_B 110 IVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD---EDVLK 173 (323)
T ss_dssp EEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH---HHHHH
T ss_pred EEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChhhchhHHHhhceEEeecCCCH---HHHHH
Confidence 99999852 222222333333321 2346788888888889999999999999987443 23444
Q ss_pred HHh
Q psy12735 212 WVN 214 (233)
Q Consensus 212 wl~ 214 (233)
|+.
T Consensus 174 ~l~ 176 (323)
T 1sxj_B 174 RLL 176 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 143
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.25 E-value=2.3e-05 Score=74.25 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=80.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--CcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~--~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+.++||+|+|||++.+.++... +.++....+. .......+++|.-+.....-.+|.+...+++ ..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~---------~~ 557 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK---------HP 557 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH---------CS
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh---------CC
Confidence 68999999999999999999876 2222221111 1111223344422110000012333333332 24
Q ss_pred ceEEEEeCC--CCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-------------------------c
Q psy12735 132 RKYILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-------------------------Y 184 (233)
Q Consensus 132 ~~~lvlDep--~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-------------------------~ 184 (233)
..+++|||. .+......+..++++. .+....|..+.. .++.+|+.+.... .
T Consensus 558 ~~vl~lDEi~~~~~~~~~~Ll~~le~~-~~~~~~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 635 (758)
T 1r6b_X 558 HAVLLLDEIEKAHPDVFNILLQVMDNG-TLTDNNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKI 635 (758)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHS-EEEETTTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHH
T ss_pred CcEEEEeCccccCHHHHHHHHHHhcCc-EEEcCCCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHh
Confidence 689999996 3333444556666653 334445665555 4556666543211 6
Q ss_pred cChhhhhcc-eEEEECCCCC-cchHHHHHHHh
Q psy12735 185 ASPATVSRA-GMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 185 ~sPa~isr~-~~v~~~~~~~-~~~~~~~swl~ 214 (233)
..|.+.+|| .+|++.+-.- ....++...+.
T Consensus 636 ~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 636 FTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence 789999999 6777776433 22344444443
No 144
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.25 E-value=4.4e-07 Score=72.29 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=25.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
..+..++|+|||||||||++++|++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45778999999999999999999998764
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.25 E-value=2.2e-05 Score=66.88 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
..+.|.||+|+|||++++.++... +.++.. ++.... . ..+-+...+.. . ..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~--~~~~~~----------~-----~~~~~~~~~~~----~----~~~ 107 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKT--TAAPMI----------E-----KSGDLAAILTN----L----SEG 107 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEE--EEGGGC----------C-----SHHHHHHHHHT----C----CTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEE--ecchhc----------c-----chhHHHHHHHh----c----cCC
Confidence 479999999999999999997754 223221 111000 0 11222222221 1 367
Q ss_pred eEEEEeCCC--CHHhHHhHHHHhhcccccccc-Cc---eEEEcc-CcceEEEEeCCcCccChhhhhcc-eEEEECCCCC-
Q psy12735 133 KYILFDGDV--DALWIENMNSVMDDNKILTLA-NG---ERIRLL-AHCQLLFEVGDLQYASPATVSRA-GMVYVDPINL- 203 (233)
Q Consensus 133 ~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~-~g---~~i~~~-~~~~~i~et~dl~~~sPa~isr~-~~v~~~~~~~- 203 (233)
.++++||.- .......+..++++.....+. ++ ..+... +++.++..|+......|++.+|| ..+.+.+-..
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHH
Confidence 899999963 344444455555543321111 10 111111 24788898999999999999999 6777776432
Q ss_pred cchHHHHHHHh
Q psy12735 204 GYQPYWTRWVN 214 (233)
Q Consensus 204 ~~~~~~~swl~ 214 (233)
....++...+.
T Consensus 188 e~~~il~~~~~ 198 (338)
T 3pfi_A 188 ELALILQKAAL 198 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 22334444443
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.25 E-value=8.3e-06 Score=69.87 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+.++|+||||+||||+++++++.+.. .+... . |.+ ....+-...+.... ...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~~~--s----------g~~-----~~~~~~l~~~~~~~--------~~~ 103 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT---NIHVT--S----------GPV-----LVKQGDMAAILTSL--------ERG 103 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC---CEEEE--E----------TTT-----CCSHHHHHHHHHHC--------CTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC---CEEEE--e----------chH-----hcCHHHHHHHHHHc--------cCC
Confidence 67999999999999999999997631 11110 0 000 00111111221111 245
Q ss_pred eEEEEeCCC--CHHhHHhHHHHhhccc-cccccCc---eEEE-ccCcceEEEEeCCcCccChhhhhcceE-EEECCCC
Q psy12735 133 KYILFDGDV--DALWIENMNSVMDDNK-ILTLANG---ERIR-LLAHCQLLFEVGDLQYASPATVSRAGM-VYVDPIN 202 (233)
Q Consensus 133 ~~lvlDep~--~~~~~~~l~~~l~~~~-~l~l~~g---~~i~-~~~~~~~i~et~dl~~~sPa~isr~~~-v~~~~~~ 202 (233)
+++++||.- .....+.+...+.... .+....+ ..+. ....+.++..+.....+|++..+||++ +.+++..
T Consensus 104 ~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 104 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 688888852 2211222222222211 0000011 1111 112456666778888999999999985 4577643
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.24 E-value=1.3e-05 Score=68.86 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC--cc-----cccccccccccCCCCcCchhHHHHHHHHHhcCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP--KA-----VSVIELYGVLNPETRDWYDGLLSNIFRAVNKPL 125 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~--~~-----~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~ 125 (233)
+.+.|.||+|+||||+++.+++.......... ..... .. ....+++.. +.......+.+ ..+...+....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~~~~ 115 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITA-TPCGVCDNCREIEQGRFVDLIEI-DAASRTKVEDT-RDLLDNVQYAP 115 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-SCCSSSHHHHHHHTSCCSSCEEE-ETTCSCCSSCH-HHHHHHTTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcccHHHHHHhccCCCceEEe-cccccCCHHHH-HHHHHHHhhcc
Confidence 45899999999999999999886643221100 00000 00 000011111 11111111222 22333332211
Q ss_pred CCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCCCcc
Q psy12735 126 DPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPINLGY 205 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~~~~ 205 (233)
. ...+.++++||. +.+..+..+.++..... .+.+..+++.+++.....|++.+||..+.+.+-.
T Consensus 116 ~--~~~~~vliiDe~-~~l~~~~~~~Ll~~le~----------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~--- 179 (373)
T 1jr3_A 116 A--RGRFKVYLIDEV-HMLSRHSFNALLKTLEE----------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD--- 179 (373)
T ss_dssp S--SSSSEEEEEECG-GGSCHHHHHHHHHHHHS----------CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC---
T ss_pred c--cCCeEEEEEECc-chhcHHHHHHHHHHHhc----------CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC---
Confidence 1 236789999985 22233333444332111 1345788888888888999999999999988743
Q ss_pred hHHHHHHHh
Q psy12735 206 QPYWTRWVN 214 (233)
Q Consensus 206 ~~~~~swl~ 214 (233)
..-+..|+.
T Consensus 180 ~~~~~~~l~ 188 (373)
T 1jr3_A 180 VEQIRHQLE 188 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 233445554
No 148
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=7.3e-06 Score=70.78 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=80.6
Q ss_pred CeehHHHHHHHHHHHHHHh-h--cceEEEEcCCCCChHHHHHHHHhhhhhc--------CCCeEEeeeCCccc--c----
Q psy12735 32 YEMVPVQVDKVVQMYETML-T--RHSTMIVGPTGGGKSVVINALVKTSTVL--------GYPARTYTLNPKAV--S---- 94 (233)
Q Consensus 32 l~~~~~~~~k~~ql~~~l~-~--~~~v~lvGpsGsGKSTlik~L~~~~~~~--------~~~i~~~~~~~~~~--~---- 94 (233)
+.-.+..++++.+...... . ...+.|.||+|+||||+++.++...... +..+ ..++.... +
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ--AYVNCREVGGTPQAV 99 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE--EEEEHHHHCSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE--EEEECccCCCCHHHH
Confidence 3333444444444443322 2 4569999999999999999998865332 2222 22221111 1
Q ss_pred ----cccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHh---HHh-HHHHhhccccccccCceE
Q psy12735 95 ----VIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALW---IEN-MNSVMDDNKILTLANGER 166 (233)
Q Consensus 95 ----~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~---~~~-l~~~l~~~~~l~l~~g~~ 166 (233)
..++.|.-......-...+...+...+.. .+.++++||.-.-.. .+. +..++...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~vlilDEi~~l~~~~~~~~~l~~l~~~~---------- 162 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-------IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD---------- 162 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-------SCEEEEEETTHHHHHSTTSHHHHHHHHTSS----------
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-------CCCEEEEECHHHhccCCCCceeHHHHhcCC----------
Confidence 01111111111111112334444333321 223999998632211 222 33333221
Q ss_pred EEccCcceEEEEeCCc---CccChhhhhc-ceEEEECCCCC-cchHHHHHHHh
Q psy12735 167 IRLLAHCQLLFEVGDL---QYASPATVSR-AGMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 167 i~~~~~~~~i~et~dl---~~~sPa~isr-~~~v~~~~~~~-~~~~~~~swl~ 214 (233)
.++.+|+.+.+. ..+.|+..+| |..+.+.+-.. ....++...+.
T Consensus 163 ----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 163 ----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp ----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred ----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 457888877776 5778988899 46888887533 33445554443
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.24 E-value=1.2e-06 Score=74.16 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=36.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
.++.++++|++|+||||++..|++.+...++.+.+.+.++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 356789999999999999999999998888999888777643
No 150
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.23 E-value=3.6e-06 Score=70.73 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=67.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.|.||+|+||||+++.++..+...+....+..++... ..+ ..... ... ..++....-....++
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~-----~~~~~-~~~----~~~~~~~~~~~~~~~ 104 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----ERG-----IDVVR-HKI----KEFARTAPIGGAPFK 104 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-----TTC-----TTTSS-HHH----HHHHHSCCSSSCCCE
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-----ccC-----hHHHH-HHH----HHHHhcCCCCCCCce
Confidence 499999999999999999988653211111111111110 000 00111 111 122211110013689
Q ss_pred EEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 134 YILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 134 ~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
++++||.- .+..+..+.++..... .+.+..+++.+.+.....|++.+||..+.+.+-.
T Consensus 105 vliiDe~~-~l~~~~~~~L~~~le~----------~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 105 IIFLDEAD-ALTADAQAALRRTMEM----------YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp EEEEETGG-GSCHHHHHTTGGGTSS----------SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred EEEEeCCC-cCCHHHHHHHHHHHHh----------cCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 99999852 2222333333322111 1345788888888888999999999999998644
No 151
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.22 E-value=1.5e-05 Score=67.53 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKER 132 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 132 (233)
+.+.+.||+|+||||+++.++..+. . .+..++.... ........+...+.... ....+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~---~--~~~~i~~~~~----------------~~~~i~~~~~~~~~~~~-~~~~~ 106 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN---A--DMMFVNGSDC----------------KIDFVRGPLTNFASAAS-FDGRQ 106 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT---E--EEEEEETTTC----------------CHHHHHTHHHHHHHBCC-CSSCE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC---C--CEEEEccccc----------------CHHHHHHHHHHHHhhcc-cCCCC
Confidence 3456677799999999999987652 1 2222221110 01111222222222110 01368
Q ss_pred eEEEEeCCCCH---HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCCC
Q psy12735 133 KYILFDGDVDA---LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 133 ~~lvlDep~~~---~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~~ 202 (233)
+++++||.-.- .....+..+++.. +.+..+|+.+.+.....|++.+||.++.+.+-.
T Consensus 107 ~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~ 166 (324)
T 3u61_B 107 KVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNIDGIIKPLQSRCRVITFGQPT 166 (324)
T ss_dssp EEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGGGSCTTHHHHSEEEECCCCC
T ss_pred eEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCccccCHHHHhhCcEEEeCCCC
Confidence 99999997432 2223333333321 134788888888889999999999999887654
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.22 E-value=3.2e-05 Score=65.93 Aligned_cols=140 Identities=12% Similarity=0.116 Sum_probs=77.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
..+++.|.||+|+|||++++.++.... +.. +..++.. ++.+.+.. -+......++..... .
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~--~~~--~~~i~~~-----~l~~~~~g----~~~~~~~~lf~~a~~------~ 104 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN--NST--FFSISSS-----DLVSKWLG----ESEKLVKNLFQLARE------N 104 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT--SCE--EEEEECC-----SSCCSSCC----SCHHHHHHHHHHHHH------T
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC--CCc--EEEEEhH-----HHHhhhhh----HHHHHHHHHHHHHHh------c
Confidence 457899999999999999999998641 222 2222211 12111100 012233333333221 3
Q ss_pred CceEEEEeCCCCH----------HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcc-eEEEEC
Q psy12735 131 ERKYILFDGDVDA----------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRA-GMVYVD 199 (233)
Q Consensus 131 ~~~~lvlDep~~~----------~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~-~~v~~~ 199 (233)
.|.++++||.-.- ......+.++.....+... ..++.++.-|.....+.|++.+|| ..+++.
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-------~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-------NDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-------CTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-------CCCEEEEEecCCcccCCHHHHhhcCeEEEeC
Confidence 6889999986321 0111223333322111111 134677777888889999999999 677877
Q ss_pred CCCC-cchHHHHHHHhhc
Q psy12735 200 PINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~~~ 216 (233)
.-+. ....++...+...
T Consensus 178 ~P~~~~r~~il~~~l~~~ 195 (322)
T 1xwi_A 178 LPEPHARAAMFKLHLGTT 195 (322)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 5444 3345666666544
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=1.9e-05 Score=66.01 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=72.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
..+++.|.||+|+||||+++.+++... .+. ..++.. ++.+.+.. . .......++..... .
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~---~~~--~~i~~~-----~l~~~~~~---~-~~~~~~~~~~~~~~------~ 112 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS---ATF--LNISAA-----SLTSKYVG---D-GEKLVRALFAVARH------M 112 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---CEE--EEEEST-----TTSSSSCS---C-HHHHHHHHHHHHHH------T
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC---CCe--EEeeHH-----HHhhcccc---h-HHHHHHHHHHHHHH------c
Confidence 367899999999999999999998642 222 222211 12111100 0 11122222222211 3
Q ss_pred CceEEEEeCCCCHHh----------HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcc-eEEEEC
Q psy12735 131 ERKYILFDGDVDALW----------IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRA-GMVYVD 199 (233)
Q Consensus 131 ~~~~lvlDep~~~~~----------~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~-~~v~~~ 199 (233)
.|.++++||...-.. ....+.++........ ......+.++..+++...+.|++.+|| ..+++.
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG-----NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----------CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc-----cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 688999999743211 1112222222111110 011134677888888889999999999 566776
Q ss_pred CCCC-cchHHHHHHHhh
Q psy12735 200 PINL-GYQPYWTRWVNL 215 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~~ 215 (233)
.... ....++...+..
T Consensus 188 ~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 188 LPDEQTRELLLNRLLQK 204 (297)
T ss_dssp CCCHHHHHHHHHHHHGG
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 5443 223444554443
No 154
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.21 E-value=1.6e-06 Score=68.93 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
.+..++|+|+|||||||+++.|++.+.+.++.+...+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 456799999999999999999999988778887765544
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.21 E-value=2.4e-06 Score=73.10 Aligned_cols=69 Identities=16% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcc------eEEEEcCCCCChHHHHHHHHhhhhh--cCCCeEEeeeC
Q psy12735 19 FTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRH------STMIVGPTGGGKSVVINALVKTSTV--LGYPARTYTLN 89 (233)
Q Consensus 19 ~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~------~v~lvGpsGsGKSTlik~L~~~~~~--~~~~i~~~~~~ 89 (233)
..+.+...++.+++...... .+......+..+. .++|+|||||||||++++|++.+.. .++.+.+..++
T Consensus 55 v~~~y~pl~rll~~~~~~~~--~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 55 VTEIYLPLSRLLSFYVTARQ--TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHTHHHHHHHHHHHHHHHH--HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHHHHHHHHHHhhcchH--HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 34444445555555543332 2233333444443 7999999999999999999998863 45565554444
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.20 E-value=5.7e-07 Score=71.32 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=29.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
....+..++|+|||||||||+.+.|++.+. ..|.+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 345688899999999999999999999887 34444
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=9.5e-06 Score=68.35 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=66.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.|.||+|+||||+++.++..+...+....+..++... ..+ .+.+... +..+.....-....+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~-~~~~~~~~~~~~~~~~ 112 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-----ERG---------INVIREK-VKEFARTKPIGGASFK 112 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-----HHH---------HHTTHHH-HHHHHHSCCGGGCSCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-----cCc---------hHHHHHH-HHHHHhhCCcCCCCCe
Confidence 599999999999999999988653221111111111110 000 0011111 1122111100013578
Q ss_pred EEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 134 YILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 134 ~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
++++||.- +......+...++.. +.+..+++.+.+.....|++.+||..+.+.+-
T Consensus 113 vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l 169 (327)
T 1iqp_A 113 IIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 169 (327)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHTEEEEECCCC
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCccccCHHHHhhCcEEEecCC
Confidence 99999852 222233333333331 23467888888888889999999999998873
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.19 E-value=1.2e-05 Score=67.84 Aligned_cols=137 Identities=13% Similarity=0.195 Sum_probs=73.1
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
..++++.|.||+|+||||+++.+++... .+ +..++. .++.+.+.... ......++.....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~--~i~v~~-----~~l~~~~~g~~----~~~~~~~f~~a~~------ 106 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ---AN--FISIKG-----PELLTMWFGES----EANVREIFDKARQ------ 106 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT---CE--EEEECH-----HHHHHHHHTTC----TTHHHHHHHHHHH------
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC---CC--EEEEEh-----HHHHhhhcCch----HHHHHHHHHHHHh------
Confidence 5677899999999999999999998653 21 222221 11211110000 1112222222211
Q ss_pred CCceEEEEeCCCCHHhH-------------HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cce
Q psy12735 130 KERKYILFDGDVDALWI-------------ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAG 194 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~-------------~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~ 194 (233)
..|.++++||.-.-... ..++.++.....+. ...++.+|..|+....+.|+++. |+.
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~atn~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPDIIDPAILRPGRLD 178 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEESCGGGSCGGGGSTTSSC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEecCCccccChHHhcCCccc
Confidence 25789999986421110 11233333211111 12357888888888889999887 884
Q ss_pred -EEEECCCCCcc-hHHHHHHHh
Q psy12735 195 -MVYVDPINLGY-QPYWTRWVN 214 (233)
Q Consensus 195 -~v~~~~~~~~~-~~~~~swl~ 214 (233)
.+++..-...- ..++...+.
T Consensus 179 ~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 179 QLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp EEEECCCCCHHHHHHHHHHHHT
T ss_pred eEEecCCcCHHHHHHHHHHHHc
Confidence 66776533321 234444443
No 159
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=1e-06 Score=74.61 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=28.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
...++.++|+||||||||||+++|++...+..|.+..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 4568899999999999999999999998887777765
No 160
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.19 E-value=2.3e-05 Score=74.34 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=69.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCce
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERK 133 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 133 (233)
.+.++||+|+|||++.+.++......+.++....+. ++.. . ...+.|.+...+++ ....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s-------~~~~---~--~~~~~~~l~~~~~~---------~~~~ 581 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS-------EYME---K--HSTSGGQLTEKVRR---------KPYS 581 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG-------GGCS---S--CCCC---CHHHHHH---------CSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech-------hccc---c--cccccchhhHHHHh---------CCCe
Confidence 599999999999999999999875444444332221 1111 0 11113443333332 2456
Q ss_pred EEEEeCC--CCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC------------ccChhhhhcc-eEEEE
Q psy12735 134 YILFDGD--VDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ------------YASPATVSRA-GMVYV 198 (233)
Q Consensus 134 ~lvlDep--~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~------------~~sPa~isr~-~~v~~ 198 (233)
+++|||. .+......+..++++. .+...+|..+. ..++.+|+-+..-. ...|.+.+|| .++++
T Consensus 582 vl~lDEi~~~~~~~~~~Ll~~le~g-~~~~~~g~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 582 VVLLDAIEKAHPDVFNILLQVLEDG-RLTDSKGRTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHS-BCC-----CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred EEEEeCccccCHHHHHHHHHHhccC-eEEcCCCCEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 9999996 3333444556666653 33444444332 34677777655221 2789999999 78887
Q ss_pred CCC
Q psy12735 199 DPI 201 (233)
Q Consensus 199 ~~~ 201 (233)
.+-
T Consensus 660 ~~l 662 (758)
T 3pxi_A 660 HSL 662 (758)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 161
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.18 E-value=8.2e-06 Score=65.23 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 39 VDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 39 ~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..+..+...+..+..+++.||+|+||||++..+++.+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444444445579999999999999999998875
No 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=2.1e-05 Score=67.69 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
+.+.|.||+|+|||++++.++....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998764
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.18 E-value=5.4e-07 Score=77.96 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 41 KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 41 k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+++...-.+..|+.++|+||||||||||+++|++...+..+.+...+
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 34444456677888999999999999999999999877655554433
No 164
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.17 E-value=2.2e-05 Score=70.59 Aligned_cols=122 Identities=14% Similarity=0.235 Sum_probs=65.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhH-HHHHHHHHhcCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGL-LSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi-~~~~~~~~~~~~~~~~~ 130 (233)
..++.|+||+|+||||+++.+++.. +.++. .++.. ++...+.. ..+. ...++..... .
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~--~is~~-----~~~~~~~g-----~~~~~~r~lf~~A~~------~ 107 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFF--HISGS-----DFVELFVG-----VGAARVRDLFAQAKA------H 107 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH---TCCEE--EEEGG-----GTTTCCTT-----HHHHHHHHHHHHHHH------T
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCee--eCCHH-----HHHHHHhc-----ccHHHHHHHHHHHHh------c
Confidence 4579999999999999999999854 22221 22211 11111000 0111 1111222111 3
Q ss_pred CceEEEEeCCCC----------HHh---HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cce-
Q psy12735 131 ERKYILFDGDVD----------ALW---IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAG- 194 (233)
Q Consensus 131 ~~~~lvlDep~~----------~~~---~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~- 194 (233)
.|.++++||+-. +.+ ...++.++.....+. -..++.+|..|+....+.|+.+. |+.
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaTn~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATNRPDILDPALLRPGRFDK 179 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEecCChhhhchhhcccCccee
Confidence 689999999722 122 223445443321111 12347888889998888898774 665
Q ss_pred EEEECCCC
Q psy12735 195 MVYVDPIN 202 (233)
Q Consensus 195 ~v~~~~~~ 202 (233)
.++++.-+
T Consensus 180 ~i~i~~Pd 187 (476)
T 2ce7_A 180 KIVVDPPD 187 (476)
T ss_dssp EEECCCCC
T ss_pred EeecCCCC
Confidence 56666433
No 165
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.17 E-value=1.2e-05 Score=77.34 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--CcccccccccccccCCCCcCc-hhHHHHHHHHHhcCCCCCC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPETRDWY-DGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~--~~~~~~~~l~g~~~~~~~~~~-~gi~~~~~~~~~~~~~~~~ 129 (233)
..+.|+||+|+|||++.+.++......+.++...... .......+++|..+.. ..+. .|.+...++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~-~G~~~~g~l~~~~~~--------- 658 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGY-VGYEEGGQLTEAVRR--------- 658 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---------------CHHHHHHH---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCC-cCccccchHHHHHHh---------
Confidence 4789999999999999999998775444443322211 1111223334321110 0111 1333333222
Q ss_pred CCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc-------------------------
Q psy12735 130 KERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL------------------------- 182 (233)
Q Consensus 130 ~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl------------------------- 182 (233)
....+++|||.- +......+..++++.. +.-..|..+.+ .++.+|+. +|.
T Consensus 659 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~t-sn~~~~~~~~~~~~~~~~~~l~~~v~~~ 735 (854)
T 1qvr_A 659 RPYSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILT-SNLGSPLILEGLQKGWPYERIRDEVFKV 735 (854)
T ss_dssp CSSEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEE-CCTTHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEe-cCcChHHHhhhcccccchHHHHHHHHHH
Confidence 245799999973 2223334445555432 33334444443 23445554 443
Q ss_pred --CccChhhhhcc-eEEEECCCCC-cchHHHHHHHh
Q psy12735 183 --QYASPATVSRA-GMVYVDPINL-GYQPYWTRWVN 214 (233)
Q Consensus 183 --~~~sPa~isr~-~~v~~~~~~~-~~~~~~~swl~ 214 (233)
....|.+.+|| .++.+.+-.- ....++...+.
T Consensus 736 ~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 736 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 24689999999 5666655321 22344444444
No 166
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.16 E-value=6.3e-07 Score=79.87 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee
Q psy12735 42 VVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL 88 (233)
Q Consensus 42 ~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~ 88 (233)
++...-.+..|+.++|+||||||||||+++|++...+..+.+...+.
T Consensus 147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp HHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 44444566778889999999999999999999998877776666554
No 167
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.16 E-value=6.4e-05 Score=61.52 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++.|+||+|+||||+++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5579999999999999999999865
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=9.2e-07 Score=69.92 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
+..|..++|+|||||||||++++|++.+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 456888999999999999999999998743
No 169
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=3.5e-05 Score=62.98 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..+++|+|||||||||+++++++...
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999998764
No 170
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=7.3e-05 Score=66.55 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=76.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
..+++.|.||+|+|||++++.++.... +. .+..++.. ++++.+... .......++..... .
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~~--~~~~v~~~-----~l~~~~~g~----~~~~~~~~f~~a~~------~ 226 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN--NS--TFFSISSS-----DLVSKWLGE----SEKLVKNLFQLARE------N 226 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC--SS--EEEEECCC------------------CCCTHHHHHHHHHH------S
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--CC--CEEEEeHH-----HHHhhhcch----HHHHHHHHHHHHHH------c
Confidence 357899999999999999999998651 21 22222221 122111000 01122233322221 3
Q ss_pred CceEEEEeCCCCH----------HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcce-EEEEC
Q psy12735 131 ERKYILFDGDVDA----------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAG-MVYVD 199 (233)
Q Consensus 131 ~~~~lvlDep~~~----------~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~-~v~~~ 199 (233)
.|.++++||.-.- ......+.++.....+.. ...++.+|.-|.....+.|++.+||. .+++.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-------~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 299 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-------DNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 299 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-------CCSSCEEEEEESCGGGSCHHHHTTCCEEEECC
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-------CCCCEEEEecCCCccccCHHHHhhcceEEEeC
Confidence 6889999986321 011223334332221111 12357788888888999999999995 77777
Q ss_pred CCCC-cchHHHHHHHhhc
Q psy12735 200 PINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~~~ 216 (233)
..+. ....++...+...
T Consensus 300 ~P~~~~r~~il~~~l~~~ 317 (444)
T 2zan_A 300 LPEAHARAAMFRLHLGST 317 (444)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 5444 3445666666544
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.15 E-value=5e-07 Score=73.22 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=17.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHH-hhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALV-KTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~-~~~ 76 (233)
..|+.++|+|||||||||++++|+ +.+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345569999999999999999999 876
No 172
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.15 E-value=3.5e-07 Score=71.24 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
+.++|+|+|||||||++++|.+++.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 4689999999999999999999998874
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=8.8e-07 Score=68.30 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=23.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
...+.|+||+|+||||+++.++.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999887643
No 174
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.11 E-value=7.3e-07 Score=77.45 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHhh--cceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 48 TMLT--RHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 48 ~l~~--~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
.+.. ++.++|+||||||||||+++|+|.+.+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3455 78899999999999999999999988765
No 175
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.11 E-value=1.5e-06 Score=68.93 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=24.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++.++|+|||||||||++++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 467889999999999999999999876
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.10 E-value=3.8e-06 Score=71.09 Aligned_cols=25 Identities=44% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHhh-hhhc
Q psy12735 55 TMIVGPTGGGKSVVINALVKT-STVL 79 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~-~~~~ 79 (233)
++|+||||+|||||++.|.+. ..+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCC
Confidence 699999999999999999875 4333
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=1.3e-06 Score=69.85 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
..|..++|+|||||||||+++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 56888999999999999999999987753
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.09 E-value=1.7e-06 Score=66.59 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=23.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.+..++|+|||||||||+.+.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999999753
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.09 E-value=8.3e-05 Score=64.20 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=72.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
...++.|.||+|+||||+++.++... +.++ ..++. .++.+.+.. . .......++..... .
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~--~~i~~-----~~l~~~~~g---~-~~~~~~~~~~~a~~------~ 175 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATF--FSISA-----SSLTSKWVG---E-GEKMVRALFAVARC------Q 175 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEE--EEEEG-----GGGCCSSTT---H-HHHHHHHHHHHHHH------T
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeE--EEEeh-----HHhhccccc---h-HHHHHHHHHHHHHh------c
Confidence 46689999999999999999998754 2222 22221 122211100 0 01122222222211 3
Q ss_pred CceEEEEeCCCC-------H---HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcce-EEEEC
Q psy12735 131 ERKYILFDGDVD-------A---LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAG-MVYVD 199 (233)
Q Consensus 131 ~~~~lvlDep~~-------~---~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~-~v~~~ 199 (233)
.+.++++||.-. + .....++.++....... .....++.+|..|.....+.|++.+||. .+++.
T Consensus 176 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~------~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~ 249 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT------TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIP 249 (357)
T ss_dssp CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----------CCCCEEEEEEESCGGGBCHHHHTTCCEEEECC
T ss_pred CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc------ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeC
Confidence 578999998611 0 01112233332211111 0112346777788888889999999997 56766
Q ss_pred CCCC-cchHHHHHHHh
Q psy12735 200 PINL-GYQPYWTRWVN 214 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~ 214 (233)
.-.. ....++...+.
T Consensus 250 ~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 250 LPEASARKQIVINLMS 265 (357)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 5433 22344545444
No 180
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.09 E-value=2.7e-06 Score=72.07 Aligned_cols=61 Identities=16% Similarity=0.376 Sum_probs=40.8
Q ss_pred HHHHHHHCCCeehHHHHH---HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 23 LETVLKQDNYEMVPVQVD---KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~---k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
..+.+++.++.+.+-... .+-+|.+ ...++.++|+||||||||||+|+|. ...+..|.+..
T Consensus 134 ~~~~~~~~g~~~~~~SA~~g~gi~~L~~-~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 134 WISIYRDAGYDVLKVSAKTGEGIDELVD-YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HHHHHHHTTCEEEECCTTTCTTHHHHHH-HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred HHHHHHHCCCeEEEEECCCCCCHHHHHh-hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 344556667654332221 2333333 4458899999999999999999999 88777777766
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.09 E-value=2e-06 Score=67.33 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 86 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~ 86 (233)
++.++|+|||||||||+++.|++ +.++.+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~ 33 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIE 33 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEc
Confidence 45689999999999999999987 345545443
No 182
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.09 E-value=3.6e-07 Score=77.70 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
.+..|+.++|+||||+|||||+|+|.+...+..|.+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 34578999999999999999999999988766666554
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.07 E-value=1e-05 Score=69.06 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=35.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
.++.++++|++|+||||++..|++.+.+.++++.+.+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35578999999999999999999999888999988777764
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.07 E-value=5.8e-05 Score=68.23 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=73.2
Q ss_pred HHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhc
Q psy12735 44 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNK 123 (233)
Q Consensus 44 ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~ 123 (233)
.+...+..+..+.|.||+|+|||++++.++..... +..... ......+..+++|...... .-..| .+..
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~-~~~f~~--~~~~~~t~~dL~G~~~~~~-~~~~g-------~~~~ 101 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN-ARAFEY--LMTRFSTPEEVFGPLSIQA-LKDEG-------RYER 101 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS-CCEEEE--ECCTTCCHHHHHCCBC------------------CB
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh-hhHHHH--HHHhcCCHHHhcCcccHHH-Hhhch-------hHHh
Confidence 44566778899999999999999999999986632 222222 2211113345555332110 00011 1111
Q ss_pred CCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCc---cChhhhhcceE-EE
Q psy12735 124 PLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQY---ASPATVSRAGM-VY 197 (233)
Q Consensus 124 ~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~---~sPa~isr~~~-v~ 197 (233)
...|....+.++++||.. +......+..++++. .... .|.....+..+ +++-|..+.. ..+++..|+.+ ++
T Consensus 102 ~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~-~v~i-~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~ 178 (500)
T 3nbx_X 102 LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER-QFRN-GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLW 178 (500)
T ss_dssp CCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS-EEEC-SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEE
T ss_pred hhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH-hccC-CCCcCCcchhh-hhhccccCCCccccHHHHHHHHHHHHH
Confidence 111111256799999973 222233344444442 2222 34444444332 3555654433 34589999865 55
Q ss_pred ECC
Q psy12735 198 VDP 200 (233)
Q Consensus 198 ~~~ 200 (233)
++.
T Consensus 179 v~~ 181 (500)
T 3nbx_X 179 LDK 181 (500)
T ss_dssp CCS
T ss_pred HHH
Confidence 553
No 185
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.07 E-value=3e-06 Score=73.48 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=39.9
Q ss_pred HHHHHHHCCCeehHHHHH---HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhh-hcCCCeEE
Q psy12735 23 LETVLKQDNYEMVPVQVD---KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST-VLGYPART 85 (233)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~---k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~-~~~~~i~~ 85 (233)
..+.+++.+|.+...... -+-++.. ...|+.++|+||||+|||||+++|.+... +..|.+..
T Consensus 184 ~~~~y~~~G~~v~~~Sa~~~~gl~~L~~-~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 184 QMDIYRNIGYRVLMVSSHTQDGLKPLEE-ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp HHHHHHTTTCCEEECBTTTTBTHHHHHH-HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred HHHHHHhCCCcEEEEecCCCcCHHHHHH-hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 445567788764321110 1122222 35789999999999999999999999887 76666654
No 186
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.07 E-value=1.6e-05 Score=66.56 Aligned_cols=136 Identities=15% Similarity=0.287 Sum_probs=68.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSK 130 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 130 (233)
....+.|.||+|+|||++++.++..+. .++.. ++...+... +++... ..+....++........ ...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~---~~~~~--i~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~-~~~ 115 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN---APFIK--VEATKFTEV---GYVGKE----VDSIIRDLTDSAGGAID-AVE 115 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT---CCEEE--EEGGGGSSC---CSGGGS----TTHHHHHHHHTTTTCHH-HHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEE--EcchhcccC---CccCcc----HHHHHHHHHHHhhHHHh-hcc
Confidence 356799999999999999999998662 22221 221111110 222111 11223332221100000 001
Q ss_pred CceEEEEeCCCCHH--------h------HHhHHHHhhccccccccCceEEEccCcceEEEE----eCCcCccChhhhhc
Q psy12735 131 ERKYILFDGDVDAL--------W------IENMNSVMDDNKILTLANGERIRLLAHCQLLFE----VGDLQYASPATVSR 192 (233)
Q Consensus 131 ~~~~lvlDep~~~~--------~------~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~e----t~dl~~~sPa~isr 192 (233)
.+.++++||.-.-. + ...+..+++... .....+ .....++.++.. +.+.....|++.+|
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R 192 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST-VSTKHG--MVKTDHILFIASGAFQVARPSDLIPELQGR 192 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCE-EEETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHT
T ss_pred CCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCe-Eecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhh
Confidence 36789999863211 0 122233343321 111222 122345666665 34677889999999
Q ss_pred ceE-EEECCCC
Q psy12735 193 AGM-VYVDPIN 202 (233)
Q Consensus 193 ~~~-v~~~~~~ 202 (233)
|.+ +++.+-.
T Consensus 193 ~~~~i~~~~~~ 203 (310)
T 1ofh_A 193 LPIRVELTALS 203 (310)
T ss_dssp CCEEEECCCCC
T ss_pred CCceEEcCCcC
Confidence 975 7887643
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.03 E-value=6.7e-05 Score=62.29 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..+++|+|||||||||+++++++...
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC
Confidence 44599999999999999999998764
No 188
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.03 E-value=0.00022 Score=60.03 Aligned_cols=123 Identities=19% Similarity=0.261 Sum_probs=70.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
...+.|.||+|+||||+++.++... +.++.. ++..... ..+ .+...+.... ..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~--~~~~~~~---------------~~~---~l~~~l~~~~----~~ 90 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRV--TSGPAIE---------------KPG---DLAAILANSL----EE 90 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEE--ECTTTCC---------------SHH---HHHHHHTTTC----CT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEE--EeccccC---------------ChH---HHHHHHHHhc----cC
Confidence 3679999999999999999998754 222221 1111100 011 1111222211 36
Q ss_pred ceEEEEeCCC--CHHhHHhHHHHhhccccccc-cCc---eEEE-ccCcceEEEEeCCcCccChhhhhcce-EEEECCC
Q psy12735 132 RKYILFDGDV--DALWIENMNSVMDDNKILTL-ANG---ERIR-LLAHCQLLFEVGDLQYASPATVSRAG-MVYVDPI 201 (233)
Q Consensus 132 ~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l-~~g---~~i~-~~~~~~~i~et~dl~~~sPa~isr~~-~v~~~~~ 201 (233)
+.++++||.- +......+..++++.....+ ..+ ..+. -..++.++..++......|++.+||+ .+.+.+-
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 7899999973 33333444455554321111 111 1111 12357888889888899999999995 7888764
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.02 E-value=2.8e-06 Score=67.66 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++.++|+||||||||||++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 577899999999999999999998764
No 190
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.02 E-value=6.4e-06 Score=76.10 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=73.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccC----CCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNP----ETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~----~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
.+.|+||+|+|||++++.++........ .. ....+..++.+.... ....+..|.+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~-----~~-~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A------------ 390 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY-----TT-GKGSTAAGLTAAVVREKGTGEYYLEAGALVLA------------ 390 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC-----CC-TTCSTTTTSEEECSSGGGTSSCSEEECHHHHH------------
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee-----cC-CCccccccccceeeeccccccccccCCeeEec------------
Confidence 7999999999999999999886532111 00 000111222222111 1122233543322
Q ss_pred CCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-------------ccChhhhhcce
Q psy12735 130 KERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-------------YASPATVSRAG 194 (233)
Q Consensus 130 ~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-------------~~sPa~isr~~ 194 (233)
+..++++||-- +......+..++++........|.....+.++.++.-+.... .++|++++|+.
T Consensus 391 -~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFD 469 (595)
T 3f9v_A 391 -DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFD 469 (595)
T ss_dssp -SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCS
T ss_pred -CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCe
Confidence 34689999963 334445566666654332234566667777788888665544 78999999996
Q ss_pred EEEE
Q psy12735 195 MVYV 198 (233)
Q Consensus 195 ~v~~ 198 (233)
++++
T Consensus 470 l~~~ 473 (595)
T 3f9v_A 470 LIFI 473 (595)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 5443
No 191
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.01 E-value=3.2e-05 Score=69.38 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=64.3
Q ss_pred HHHHHH--hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCC-----eEEeeeCCcccccccccccccCCCCcCchhHHHH
Q psy12735 44 QMYETM--LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYP-----ARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSN 116 (233)
Q Consensus 44 ql~~~l--~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-----i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~ 116 (233)
++.+.+ .....+.|+||+|+|||++++.++..+.....+ ..+..++.. +.+ ...|... ...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------~~~---~g~~e~~-~~~ 258 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------TKY---RGEFEDR-LKK 258 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------CTT-HHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------ccc---cchHHHH-HHH
Confidence 344444 345578999999999999999999876432111 111111111 101 1112222 222
Q ss_pred HHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-----ccChhhhh
Q psy12735 117 IFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-----YASPATVS 191 (233)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-----~~sPa~is 191 (233)
++..+.. ..+.++++|+..+ ..+.++. .+..| ++++|.-|.... ...|++.+
T Consensus 259 ~~~~~~~------~~~~iLfiD~~~~-----a~~~L~~-----~L~~g-------~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 259 VMDEIRQ------AGNIILFIDAAID-----ASNILKP-----SLARG-------ELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp HHHHHHT------CCCCEEEECC-------------CC-----CTTSS-------SCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred HHHHHHh------cCCeEEEEeCchh-----HHHHHHH-----hhcCC-------CEEEEecCCHHHHHHHhhcCHHHHH
Confidence 3333322 2567899992221 1122211 12223 467777766554 47899999
Q ss_pred cceEEEECCCC
Q psy12735 192 RAGMVYVDPIN 202 (233)
Q Consensus 192 r~~~v~~~~~~ 202 (233)
||..|+++.-.
T Consensus 316 Rf~~i~v~~p~ 326 (468)
T 3pxg_A 316 RFQPIQVDQPS 326 (468)
T ss_dssp SEEEEECCCCC
T ss_pred hCccceeCCCC
Confidence 99999998653
No 192
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.01 E-value=1.7e-05 Score=67.43 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=74.1
Q ss_pred HHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCccccccccccccc--CCCCc--CchhHHHHHHH
Q psy12735 44 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN--PETRD--WYDGLLSNIFR 119 (233)
Q Consensus 44 ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~--~~~~~--~~~gi~~~~~~ 119 (233)
.+...+..+..+.|.||+|+|||++++.++.... .+.......+. ....+++|... ..... |..|.
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~---~~~~~i~~~~~-~~~~~l~g~~~~~~~~~~~~~~~g~------ 107 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD---LDFHRIQFTPD-LLPSDLIGTMIYNQHKGNFEVKKGP------ 107 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT---CCEEEEECCTT-CCHHHHHEEEEEETTTTEEEEEECT------
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC---CCeEEEecCCC-CChhhcCCceeecCCCCceEeccCc------
Confidence 3345566688999999999999999999988653 23222122111 11122333221 11011 11110
Q ss_pred HHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC------ccChhhhh
Q psy12735 120 AVNKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ------YASPATVS 191 (233)
Q Consensus 120 ~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~------~~sPa~is 191 (233)
-...++++||.- +......+...+++. .... .|.....+..+.++. +.+.. ...|++.+
T Consensus 108 ----------l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~-~~~~-~g~~~~~~~~~~via-t~np~~~~~~~~l~~~l~~ 174 (331)
T 2r44_A 108 ----------VFSNFILADEVNRSPAKVQSALLECMQEK-QVTI-GDTTYPLDNPFLVLA-TQNPVEQEGTYPLPEAQVD 174 (331)
T ss_dssp ----------TCSSEEEEETGGGSCHHHHHHHHHHHHHS-EEEE-TTEEEECCSSCEEEE-EECTTCCSCCCCCCHHHHT
T ss_pred ----------ccccEEEEEccccCCHHHHHHHHHHHhcC-ceee-CCEEEECCCCEEEEE-ecCCCcccCcccCCHHHHh
Confidence 123689999952 222233334444442 2223 455566666666664 44433 27899999
Q ss_pred cceE-EEECCC
Q psy12735 192 RAGM-VYVDPI 201 (233)
Q Consensus 192 r~~~-v~~~~~ 201 (233)
||.+ +.++.-
T Consensus 175 Rf~~~i~i~~p 185 (331)
T 2r44_A 175 RFMMKIHLTYL 185 (331)
T ss_dssp TSSEEEECCCC
T ss_pred heeEEEEcCCC
Confidence 9996 888764
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=7.9e-05 Score=64.35 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=74.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
.+++.|.||+|+|||++++.++.... .++ ..++. .++.+.+.. . .......++..... ..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~---~~~--~~v~~-----~~l~~~~~g---~-~~~~~~~~f~~a~~------~~ 143 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN---STF--FSVSS-----SDLVSKWMG---E-SEKLVKQLFAMARE------NK 143 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT---CEE--EEEEH-----HHHHSCC-------CHHHHHHHHHHHHH------TS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCE--EEeeH-----HHHhhhhcc---h-HHHHHHHHHHHHHH------cC
Confidence 45799999999999999999998652 222 22221 122211100 1 11222233322211 36
Q ss_pred ceEEEEeCCCCHH------h----HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcc-eEEEECC
Q psy12735 132 RKYILFDGDVDAL------W----IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRA-GMVYVDP 200 (233)
Q Consensus 132 ~~~lvlDep~~~~------~----~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~-~~v~~~~ 200 (233)
+.++++||.-.-. . ....+.++.....+.. ...++.+|.-+.....+.|++.+|| ..+++..
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~ 216 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-------DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 216 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----------CCEEEEEEESCGGGSCHHHHHTCCEEEECCC
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc-------cCCCeEEEeecCCcccCCHHHHcccCEEEEeCC
Confidence 8899999853211 0 1112233222111110 1234677777888889999999999 6677775
Q ss_pred CCC-cchHHHHHHHhhc
Q psy12735 201 INL-GYQPYWTRWVNLN 216 (233)
Q Consensus 201 ~~~-~~~~~~~swl~~~ 216 (233)
-.. ....++...+...
T Consensus 217 P~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 217 PDLAARTTMFEINVGDT 233 (355)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 443 3345566666544
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.00 E-value=0.00017 Score=62.88 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=72.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
..++.|.||+|+|||++++.++... +.+ +..++.. ++.+.+.. . .......++..... ..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~---~~~--~~~v~~~-----~l~~~~~g---~-~~~~~~~~~~~a~~------~~ 207 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES---NAT--FFNISAA-----SLTSKYVG---E-GEKLVRALFAVARE------LQ 207 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT---TCE--EEEECSC-----CC-----------CHHHHHHHHHHHHH------SS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cCc--EEEeeHH-----Hhhccccc---h-HHHHHHHHHHHHHh------cC
Confidence 5789999999999999999998753 222 2223321 12211100 1 11223333333222 35
Q ss_pred ceEEEEeCCCCH--H--------hHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcce-EEEECC
Q psy12735 132 RKYILFDGDVDA--L--------WIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAG-MVYVDP 200 (233)
Q Consensus 132 ~~~lvlDep~~~--~--------~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~-~v~~~~ 200 (233)
+.++++||.-.- . ....+..++....... -....++.+|.-+.....+.|++.+||. .+++..
T Consensus 208 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~ 281 (389)
T 3vfd_A 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ------SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSL 281 (389)
T ss_dssp SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----------CEEEEEEESCGGGCCHHHHTTCCEEEECCC
T ss_pred CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc------ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCC
Confidence 789999986211 0 1111122222111100 0112346778888888899999999996 688775
Q ss_pred CCC-cchHHHHHHHhh
Q psy12735 201 INL-GYQPYWTRWVNL 215 (233)
Q Consensus 201 ~~~-~~~~~~~swl~~ 215 (233)
-.. ....++..++..
T Consensus 282 p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCK 297 (389)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 443 223455555543
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.99 E-value=1.1e-05 Score=71.31 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHhhhh
Q psy12735 55 TMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
++|+|+||||||||+++|+|...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 69999999999999999998764
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=6.9e-05 Score=65.77 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHH---HhcCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA---VNKPL 125 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~---~~~~~ 125 (233)
+...+++.+.||+|||||++.+++++... .+ +..+.. .++.. .|. |--++.+|. .++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~---~~--f~~v~~-----s~l~s-------k~v-Gese~~vr~lF~~Ar~- 239 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD---CK--FIRVSG-----AELVQ-------KYI-GEGSRMVRELFVMARE- 239 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT---CE--EEEEEG-----GGGSC-------SST-THHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC---CC--ceEEEh-----HHhhc-------ccc-chHHHHHHHHHHHHHH-
Confidence 35567899999999999999999998543 22 222221 12221 122 112222222 2222
Q ss_pred CCCCCCceEEEEeCCCC----------HHhHH---hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh-
Q psy12735 126 DPGSKERKYILFDGDVD----------ALWIE---NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS- 191 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~----------~~~~~---~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is- 191 (233)
..|.++++||--+ +.+.+ .++++|.....+.- ..++-++.-|..+..+.||++-
T Consensus 240 ----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------~~~V~vIaATNrpd~LDpAllRp 307 (405)
T 4b4t_J 240 ----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--------SKNIKIIMATNRLDILDPALLRP 307 (405)
T ss_dssp ----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--------CCCEEEEEEESCSSSSCHHHHST
T ss_pred ----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--------CCCeEEEeccCChhhCCHhHcCC
Confidence 3688999998421 11112 23444443222111 2346788889999999999874
Q ss_pred -cc-eEEEECCCCCcc-hHHHHHHHhhc
Q psy12735 192 -RA-GMVYVDPINLGY-QPYWTRWVNLN 216 (233)
Q Consensus 192 -r~-~~v~~~~~~~~~-~~~~~swl~~~ 216 (233)
|+ ..|+++.-+..- ..++.-++.+.
T Consensus 308 GRfD~~I~i~lPd~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 308 GRIDRKIEFPPPSVAARAEILRIHSRKM 335 (405)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred CcCceEEEcCCcCHHHHHHHHHHHhcCC
Confidence 65 477777544322 24455555443
No 197
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.98 E-value=6.1e-07 Score=73.05 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=27.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL 88 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~ 88 (233)
.++|+|||||||||+++++++++.+..|.+.+.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 37899999999999999999999888887766543
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.97 E-value=8.1e-05 Score=66.40 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=70.4
Q ss_pred HHHHHHhhcc--eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHH
Q psy12735 44 QMYETMLTRH--STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAV 121 (233)
Q Consensus 44 ql~~~l~~~~--~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~ 121 (233)
.+...+..++ .++|.||+|+||||+++.+++.... . +..++.......+ ..+.+.......
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~---~--f~~l~a~~~~~~~------------ir~~~~~a~~~~ 102 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA---D--VERISAVTSGVKE------------IREAIERARQNR 102 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC---E--EEEEETTTCCHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC---C--eEEEEeccCCHHH------------HHHHHHHHHHhh
Confidence 4455555555 5999999999999999999986532 1 1112110000000 011222221111
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeC-CcC-ccChhhhhcceEEEEC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVG-DLQ-YASPATVSRAGMVYVD 199 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~-dl~-~~sPa~isr~~~v~~~ 199 (233)
. . ..+.++++||.-. +....++.++.. ++++ .+.+|..|. +.. .+.|++.+||.++.+.
T Consensus 103 ~--~----~~~~iLfIDEI~~-l~~~~q~~LL~~-----le~~-------~v~lI~att~n~~~~l~~aL~sR~~v~~l~ 163 (447)
T 3pvs_A 103 N--A----GRRTILFVDEVHR-FNKSQQDAFLPH-----IEDG-------TITFIGATTENPSFELNSALLSRARVYLLK 163 (447)
T ss_dssp H--T----TCCEEEEEETTTC-C------CCHHH-----HHTT-------SCEEEEEESSCGGGSSCHHHHTTEEEEECC
T ss_pred h--c----CCCcEEEEeChhh-hCHHHHHHHHHH-----HhcC-------ceEEEecCCCCcccccCHHHhCceeEEeeC
Confidence 1 1 3678999999632 111122222211 1112 256666553 443 6789999999999988
Q ss_pred CCCC-cchHHHHHHHh
Q psy12735 200 PINL-GYQPYWTRWVN 214 (233)
Q Consensus 200 ~~~~-~~~~~~~swl~ 214 (233)
+-.. ....++...+.
T Consensus 164 ~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAME 179 (447)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 7432 23444555544
No 199
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=4.3e-05 Score=64.94 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=72.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKE 131 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 131 (233)
..++.|.||+|+|||++++.++... +.++ ..++. .++.+.+.. . .......++..... ..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~--~~v~~-----~~l~~~~~g---~-~~~~~~~~f~~a~~------~~ 110 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTF--FSVSS-----SDLVSKWMG---E-SEKLVKQLFAMARE------NK 110 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEE--EEEEH-----HHHHTTTGG---G-HHHHHHHHHHHHHH------TS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCE--EEEch-----HHHhhcccc---h-HHHHHHHHHHHHHh------cC
Confidence 4679999999999999999998854 2222 12221 122211100 0 11222233322221 36
Q ss_pred ceEEEEeCCCCHHh----------HHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcc-eEEEECC
Q psy12735 132 RKYILFDGDVDALW----------IENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRA-GMVYVDP 200 (233)
Q Consensus 132 ~~~lvlDep~~~~~----------~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~-~~v~~~~ 200 (233)
|.++++||.-.-.. ....+.++.....+... ..++.+|..|.....+.|++.+|| ..+++..
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~ 183 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-------SQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-------CCCEEEEEEESCGGGSCHHHHHHCCEEEECCC
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-------CCceEEEEecCChhhCCHHHHcccCeEEEeCC
Confidence 78999998531100 01122232222111111 124677778888889999999999 4566765
Q ss_pred CCCc-chHHHHHHHhh
Q psy12735 201 INLG-YQPYWTRWVNL 215 (233)
Q Consensus 201 ~~~~-~~~~~~swl~~ 215 (233)
-... -..++...+..
T Consensus 184 p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 184 PDLAARTTMFEINVGD 199 (322)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcc
Confidence 4332 23444554443
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.95 E-value=7.7e-05 Score=61.33 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=69.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccc----cccccccccCC---CCcCchhHHHHHHHHH
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVS----VIELYGVLNPE---TRDWYDGLLSNIFRAV 121 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~----~~~l~g~~~~~---~~~~~~gi~~~~~~~~ 121 (233)
...+..+.|.||+|+|||++++.++......+.++.. ++...+. ..+++|..... ......|.+..
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~----- 98 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS--LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER----- 98 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEE--EEGGGSCHHHHHHHHHCCC---------CCCCHHHH-----
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEE--EecCCCChhHHHHHhcCCcccccccccccccchhhh-----
Confidence 3456789999999999999999999876544444433 2211111 11233322100 00001122111
Q ss_pred hcCCCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCC-cC------ccChhhhhc
Q psy12735 122 NKPLDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGD-LQ------YASPATVSR 192 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~d-l~------~~sPa~isr 192 (233)
....++++||.- +......+..+++... +. ..|.......++++|+.+.. +. ...|.+.+|
T Consensus 99 --------a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~-~~-~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~R 168 (265)
T 2bjv_A 99 --------ADGGTLFLDELATAPMMVQEKLLRVIEYGE-LE-RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDA 168 (265)
T ss_dssp --------TTTSEEEEESGGGSCHHHHHHHHHHHHHCE-EC-CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHH
T ss_pred --------cCCcEEEEechHhcCHHHHHHHHHHHHhCC-ee-cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHh
Confidence 134689999863 3333334444555432 11 11222233456788887654 22 357899999
Q ss_pred ceEEEE
Q psy12735 193 AGMVYV 198 (233)
Q Consensus 193 ~~~v~~ 198 (233)
+..+.+
T Consensus 169 l~~~~i 174 (265)
T 2bjv_A 169 LAFDVV 174 (265)
T ss_dssp HCSEEE
T ss_pred hcCcEE
Confidence 965443
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.95 E-value=4.1e-06 Score=67.26 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+||+||||||+.++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.95 E-value=4.4e-06 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|+|+|||||||+.+.|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46679999999999999999999865
No 203
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.94 E-value=4.2e-06 Score=67.89 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=29.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
..|..++|.|++||||||++++|++. ++.+.+.+.+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 45677999999999999999999986 5667665543
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=3.5e-05 Score=65.36 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=26.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
+..+.|.||+|+||||+++.+++.....+.++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 457999999999999999999987755444443
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.94 E-value=3.8e-06 Score=74.36 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=27.3
Q ss_pred HHHHHHhhcce--EEEEcCCCCChHHHHHHHHhhh
Q psy12735 44 QMYETMLTRHS--TMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 44 ql~~~l~~~~~--v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+.-.+..|.. ++|+||||||||||+++|+|..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33456678888 9999999999999999999974
No 206
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.93 E-value=2e-06 Score=70.41 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHH
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALV 73 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~ 73 (233)
.+..++|+|||||||||++++|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.93 E-value=1.1e-05 Score=65.24 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=27.0
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
+..|+.++|+|||||||||++..++......++.+.+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 356778999999999999996555443334455555433
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.92 E-value=2.1e-06 Score=70.70 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=22.4
Q ss_pred hhcceEEEEcCCCCChHHHHHHHH
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALV 73 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~ 73 (233)
..+..++|+|||||||||++++|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 567789999999999999999999
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=1.1e-05 Score=71.95 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVL 79 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~ 79 (233)
...+.|.||+|+|||||++++++.....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999876443
No 210
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=5.6e-06 Score=65.48 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..+..++|+|++||||||+.+.|++.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4456679999999999999999999865
No 211
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.91 E-value=6.9e-06 Score=72.30 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.7
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHH
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALV 73 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~ 73 (233)
+..|+.+.|+||||||||||++.++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3568899999999999999999654
No 212
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.90 E-value=1.1e-05 Score=68.50 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=34.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
++.++|+|||||||||+++.|++.+.+.++++.+.+.+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 4578999999999999999999999888888888776653
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.89 E-value=2.4e-05 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=22.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++.|.||+|+||||+++.+++..
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35579999999999999999998865
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.88 E-value=0.00025 Score=64.01 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..++.|+||||+|||||++++++...
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999998653
No 215
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.86 E-value=8.2e-06 Score=74.66 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHHHHHH--HHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeE
Q psy12735 39 VDKVVQMYE--TMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY-PAR 84 (233)
Q Consensus 39 ~~k~~ql~~--~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~ 84 (233)
+.+++.... .+.+|..++|+|+|||||||++++|++.+.+.+| .+.
T Consensus 354 V~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 354 VLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp HHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred hhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 334444443 5678899999999999999999999999887665 564
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.0001 Score=65.44 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=74.3
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchh---HHHHHHHHHhcCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDG---LLSNIFRAVNKPL 125 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~g---i~~~~~~~~~~~~ 125 (233)
+....++.+.||+|||||++++++++... .+ +..++. .++++ .|.+. ....++.. ++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~--~~~v~~-----s~l~s-------k~~Gese~~ir~~F~~-A~~- 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG---AN--FIFSPA-----SGIVD-------KYIGESARIIREMFAY-AKE- 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CE--EEEEEG-----GGTCC-------SSSSHHHHHHHHHHHH-HHH-
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC---CC--EEEEeh-----hhhcc-------ccchHHHHHHHHHHHH-HHh-
Confidence 34568999999999999999999998653 22 222221 12221 12221 12222222 221
Q ss_pred CCCCCCceEEEEeCCCCH----------HhH---HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhc
Q psy12735 126 DPGSKERKYILFDGDVDA----------LWI---ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSR 192 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~~----------~~~---~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr 192 (233)
..|.++++||.-+- .+. ..++.+|....... -..++-+|.-|..+..+-||++.+
T Consensus 273 ----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~vivI~ATNrp~~LDpAllRp 340 (437)
T 4b4t_L 273 ----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--------NLGQTKIIMATNRPDTLDPALLRP 340 (437)
T ss_dssp ----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS--------CTTSSEEEEEESSTTSSCTTTTST
T ss_pred ----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc--------CCCCeEEEEecCCchhhCHHHhCC
Confidence 36889999985210 111 12334443322111 113467888899999999998754
Q ss_pred --c-eEEEECCCCCc-chHHHHHHHhhc
Q psy12735 193 --A-GMVYVDPINLG-YQPYWTRWVNLN 216 (233)
Q Consensus 193 --~-~~v~~~~~~~~-~~~~~~swl~~~ 216 (233)
+ ..|+++.-+.. =..++..++.+.
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 341 GRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp TSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred CccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 3 34667643332 234555555544
No 217
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=68.82 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=34.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
+..++|+|++|||||||++.|.+...+.++++.+...+|..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 45789999999999999999999888888888877776643
No 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.83 E-value=7e-06 Score=65.14 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=24.8
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..+..++|+|||||||||+.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35567789999999999999999998865
No 219
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.83 E-value=9.9e-06 Score=62.79 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
.++|+|||||||||++++|..++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 220
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.83 E-value=9.4e-06 Score=69.17 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh--------hhcCCCeEEeeeC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS--------TVLGYPARTYTLN 89 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~--------~~~~~~i~~~~~~ 89 (233)
+.++|+|+|||||||++|.|.+.. .+..|.+.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 468999999999999999999875 3455666555443
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00014 Score=64.59 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=73.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch---hHHHHHHHHHhcCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD---GLLSNIFRAVNKPLD 126 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~---gi~~~~~~~~~~~~~ 126 (233)
...+++.+.||+|||||++++++++... .+ +..++. .++.+ .|.+ .....++.. ++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~---~~--f~~v~~-----s~l~~-------~~vGese~~ir~lF~~-A~~-- 272 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN---AT--FLKLAA-----PQLVQ-------MYIGEGAKLVRDAFAL-AKE-- 272 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT---CE--EEEEEG-----GGGCS-------SCSSHHHHHHHHHHHH-HHH--
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC---CC--EEEEeh-----hhhhh-------cccchHHHHHHHHHHH-HHh--
Confidence 4567899999999999999999998643 22 222221 12221 1221 122222222 221
Q ss_pred CCCCCceEEEEeCCCC-------HH---hH---HhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--
Q psy12735 127 PGSKERKYILFDGDVD-------AL---WI---ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS-- 191 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~-------~~---~~---~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is-- 191 (233)
..|.++++||.-+ +. +. ..+..+|.....+. -..++-++.-|..+..+-||++.
T Consensus 273 ---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--------~~~~ViVIaaTNrp~~LD~AllRpG 341 (434)
T 4b4t_M 273 ---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--------SDDRVKVLAATNRVDVLDPALLRSG 341 (434)
T ss_dssp ---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC--------SSCSSEEEEECSSCCCCCTTTCSTT
T ss_pred ---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC--------CCCCEEEEEeCCCchhcCHhHhcCC
Confidence 3688999998421 11 11 12233443322211 12246677788899999999875
Q ss_pred cce-EEEECCCCC-cchHHHHHHHhhc
Q psy12735 192 RAG-MVYVDPINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 192 r~~-~v~~~~~~~-~~~~~~~swl~~~ 216 (233)
|+- .|+++.-+. .-..++..++.+.
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 342 RLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred ceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 664 567774433 2234555555544
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.81 E-value=4.4e-05 Score=72.35 Aligned_cols=126 Identities=20% Similarity=0.285 Sum_probs=66.4
Q ss_pred HHHHHHHHh--hcceEEEEcCCCCChHHHHHHHHhhhhhcCCC-----eEEeeeCCcccccccccccccCCCCcCchhHH
Q psy12735 42 VVQMYETML--TRHSTMIVGPTGGGKSVVINALVKTSTVLGYP-----ARTYTLNPKAVSVIELYGVLNPETRDWYDGLL 114 (233)
Q Consensus 42 ~~ql~~~l~--~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~-----i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~ 114 (233)
+.++.+.+. ....+.|+||+|+||||+++.++..+.....+ ..+..++. |.. ....+...+
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------g~~--~~G~~e~~l- 256 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------GTK--YRGEFEDRL- 256 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------CTTH-
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------ccc--ccchHHHHH-
Confidence 334444553 34579999999999999999999876432111 11111111 100 011122222
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC-----ccChhh
Q psy12735 115 SNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ-----YASPAT 189 (233)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~-----~~sPa~ 189 (233)
..++..+.. ..+.++++|+..+ ..+.++. .+..+ ++++|..|.... ...|++
T Consensus 257 ~~~~~~~~~------~~~~iLfiD~~~~-----~~~~L~~-----~l~~~-------~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 257 KKVMDEIRQ------AGNIILFIDAAID-----ASNILKP-----SLARG-------ELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp HHHHHHHHT------CCCCEEEECC-------------CC-----CTTSS-------SCEEEEECCTTTTHHHHTTCSHH
T ss_pred HHHHHHHHh------cCCEEEEEcCchh-----HHHHHHH-----HHhcC-------CEEEEeCCChHHHHHHhhccHHH
Confidence 223333322 2578899993221 1111111 11222 477888776655 578999
Q ss_pred hhcceEEEECCCC
Q psy12735 190 VSRAGMVYVDPIN 202 (233)
Q Consensus 190 isr~~~v~~~~~~ 202 (233)
.+||..++++.-.
T Consensus 314 ~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 314 ERRFQPIQVDQPS 326 (758)
T ss_dssp HHSEEEEECCCCC
T ss_pred HhhCcEEEeCCCC
Confidence 9999999998653
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.81 E-value=5.2e-05 Score=72.40 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=24.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..+++++|+|||||||||+++++++.+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3567789999999999999999999865
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.80 E-value=2.1e-05 Score=60.92 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
.+..++|+|++||||||+.+.|++.+.+.|.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 467799999999999999999999876645443
No 225
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.80 E-value=0.00021 Score=64.44 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=66.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
....++.|.||+|+|||++++.++... +.++. .++.. ++.+.+. .. ..+....++.....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv--~vn~~-----~l~~~~~---g~-~~~~~~~~f~~A~~------ 295 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFF--LINGP-----EIMSKLA---GE-SESNLRKAFEEAEK------ 295 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEE--EEEHH-----HHHTSCT---TH-HHHHHHHHHHHHHH------
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEE--EEEch-----Hhhhhhc---ch-hHHHHHHHHHHHHh------
Confidence 345689999999999999999998754 32222 22211 1111000 00 11222222322221
Q ss_pred CCceEEEEeCCC----------CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cceE-E
Q psy12735 130 KERKYILFDGDV----------DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAGM-V 196 (233)
Q Consensus 130 ~~~~~lvlDep~----------~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~~-v 196 (233)
..|.++++||.- .......+..++.....+ ....++.++.-|+....+.|++.+ |+.. +
T Consensus 296 ~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~--------~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i 367 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--------KQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367 (489)
T ss_dssp TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS--------CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEE
T ss_pred cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc--------ccCCceEEEEecCCccccCHHHhCCCcCceEE
Confidence 357899999851 222223333343322111 112357888888888888899887 5543 6
Q ss_pred EECC
Q psy12735 197 YVDP 200 (233)
Q Consensus 197 ~~~~ 200 (233)
++..
T Consensus 368 ~i~~ 371 (489)
T 3hu3_A 368 DIGI 371 (489)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 6654
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.79 E-value=2e-05 Score=66.54 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPK 91 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~ 91 (233)
.++.++++||+|+||||+++.|++.+.+ .|.++.+...++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 4678999999999999999999999876 5557877776654
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=9.8e-05 Score=65.42 Aligned_cols=136 Identities=11% Similarity=0.179 Sum_probs=73.8
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch---hHHHHHHHHHhcCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD---GLLSNIFRAVNKPLD 126 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~---gi~~~~~~~~~~~~~ 126 (233)
...+++.+.||+|||||++++++++... .+ +..++. .++++ .|.+ .....++.. ++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~---~~--~~~v~~-----~~l~~-------~~~Ge~e~~ir~lF~~-A~~-- 263 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK---AA--FIRVNG-----SEFVH-------KYLGEGPRMVRDVFRL-ARE-- 263 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT---CE--EEEEEG-----GGTCC-------SSCSHHHHHHHHHHHH-HHH--
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CC--eEEEec-----chhhc-------cccchhHHHHHHHHHH-HHH--
Confidence 5567899999999999999999998653 22 222221 12221 1221 122223222 221
Q ss_pred CCCCCceEEEEeCCCCH-------------HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--
Q psy12735 127 PGSKERKYILFDGDVDA-------------LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS-- 191 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~~-------------~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is-- 191 (233)
..|.++++||.-+- .....++++|.....+. -..++-+|.-|..+..+-||++-
T Consensus 264 ---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~--------~~~~v~vI~aTN~~~~LD~AllRpG 332 (428)
T 4b4t_K 264 ---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD--------QSTNVKVIMATNRADTLDPALLRPG 332 (428)
T ss_dssp ---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC--------SSCSEEEEEEESCSSSCCHHHHSSS
T ss_pred ---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC--------CCCCEEEEEecCChhhcChhhhcCC
Confidence 36889999975210 01112344443222111 12346788889999999999874
Q ss_pred cce-EEEE-C-CCCCcchHHHHHHHhhc
Q psy12735 192 RAG-MVYV-D-PINLGYQPYWTRWVNLN 216 (233)
Q Consensus 192 r~~-~v~~-~-~~~~~~~~~~~swl~~~ 216 (233)
|+- .|++ + |+.-.-..++..++.+.
T Consensus 333 Rfd~~I~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 333 RLDRKIEFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp SEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 665 4667 3 23222234555555443
No 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.78 E-value=0.00027 Score=63.98 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=35.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHh--hhhhcCCCeEEeeeCCcccc
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVK--TSTVLGYPARTYTLNPKAVS 94 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~--~~~~~~~~i~~~~~~~~~~~ 94 (233)
+..+..+.|+|+|||||||+++.+.. ++....+.+++..++++...
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e 211 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE 211 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh
Confidence 34567799999999999999999876 34445577888888887543
No 229
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.78 E-value=7.2e-06 Score=71.60 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 44 QMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 44 ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+...+..++.++|+|||||||||++++|++..
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334557788999999999999999999999854
No 230
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.76 E-value=9.8e-06 Score=64.27 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..+..++|+|++||||||+.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34556779999999999999999999865
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=0.00024 Score=63.03 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=33.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
+..++++||+||||||++..|+..+...|+++.+...++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 357899999999999999999999888888888777665
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.75 E-value=0.00035 Score=58.97 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC--CcccccccccccccCC-CC--cCchhHHHHHHHHHhcC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN--PKAVSVIELYGVLNPE-TR--DWYDGLLSNIFRAVNKP 124 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~--~~~~~~~~l~g~~~~~-~~--~~~~gi~~~~~~~~~~~ 124 (233)
.....+.|.||+|+|||++.+.+.......+.++...... +...-..+++|..... .. .-..|.+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a------- 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA------- 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHH-------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhc-------
Confidence 4567899999999999999999988655444444332221 1111122345542110 00 0112333222
Q ss_pred CCCCCCCceEEEEeCCC--CHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCc-C------ccChhhhhcceE
Q psy12735 125 LDPGSKERKYILFDGDV--DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL-Q------YASPATVSRAGM 195 (233)
Q Consensus 125 ~~~~~~~~~~lvlDep~--~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl-~------~~sPa~isr~~~ 195 (233)
...++++||.- +......+..++++... . .-|.....+.++++|+-++.. . ...+.+..|+..
T Consensus 96 ------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~-~-~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~ 167 (304)
T 1ojl_A 96 ------DGGTLFLDEIGDISPLMQVRLLRAIQEREV-Q-RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNV 167 (304)
T ss_dssp ------TTSEEEEESCTTCCHHHHHHHHHHHHSSBC-C-BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSS
T ss_pred ------CCCEEEEeccccCCHHHHHHHHHHHhcCEe-e-ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCe
Confidence 34579999964 22222333444444322 1 122223345678888877642 2 346788899866
Q ss_pred EEE--CCCC---CcchHHHHHHHhh
Q psy12735 196 VYV--DPIN---LGYQPYWTRWVNL 215 (233)
Q Consensus 196 v~~--~~~~---~~~~~~~~swl~~ 215 (233)
+.+ .+-. -....++..++.+
T Consensus 168 ~~i~lPpL~eR~edi~~l~~~~l~~ 192 (304)
T 1ojl_A 168 VAIEMPSLRQRREDIPLLADHFLRR 192 (304)
T ss_dssp EEEECCCSGGGGGGHHHHHHHHHHH
T ss_pred eEEeccCHHHhHhhHHHHHHHHHHH
Confidence 554 3321 1234566666553
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.75 E-value=2.4e-05 Score=60.91 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=29.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
.+..++|+|++||||||+.+.|++.+...++.+.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 46679999999999999999999988777776644
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.75 E-value=3.6e-05 Score=59.91 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEee
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~ 87 (233)
..++|+|+|||||||+++.|.+.+...+..+....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 46899999999999999999988766665554433
No 235
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.74 E-value=2e-05 Score=65.01 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.2
Q ss_pred HHHHHHhh---cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 44 QMYETMLT---RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 44 ql~~~l~~---~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
++...+.. ++.++|+|++||||||+.+.|++.+
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 33344555 8899999999999999999999865
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=66.70 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=23.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
...+++|+|||||||||+++++++...
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 345699999999999999999999764
No 237
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.73 E-value=5e-05 Score=65.29 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
...+..++|+|++|+||||+++.|++.+.+.++.+.+...++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 45577899999999999999999999988888888777766643
No 238
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.72 E-value=0.00065 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...+.|.||+|+|||++++.++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999999999998863
No 239
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.72 E-value=5.2e-06 Score=65.60 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..+..++|+|+||||||||++.+.+..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567779999999999999999999865
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.70 E-value=7.4e-05 Score=64.74 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...+.|+||+|+||||+++.++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 241
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00025 Score=60.45 Aligned_cols=60 Identities=7% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCC-CeehHHHHHHHHHHH-HHHh--hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 18 EFTAALETVLKQDN-YEMVPVQVDKVVQMY-ETML--TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 18 ~~~~~~~~~~~~~~-l~~~~~~~~k~~ql~-~~l~--~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.+++.+.+.++-.. +.--+.++.++.... ..+. .+..+.|.||+|+|||++++.++..+.
T Consensus 7 ~~~~~l~~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 7 NLEESIRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35555556555444 444455555655444 3333 455689999999999999999988764
No 242
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00018 Score=63.61 Aligned_cols=136 Identities=11% Similarity=0.148 Sum_probs=74.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHH---HhcCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRA---VNKPLD 126 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~---~~~~~~ 126 (233)
....++.+.||+|+|||++++++++... .+ +..++. .+++. .|.+ --++.++. .++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~--fi~v~~-----s~l~s-------k~vG-esek~ir~lF~~Ar~-- 273 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS---AT--FLRIVG-----SELIQ-------KYLG-DGPRLCRQIFKVAGE-- 273 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT---CE--EEEEES-----GGGCC-------SSSS-HHHHHHHHHHHHHHH--
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC---CC--EEEEEH-----HHhhh-------ccCc-hHHHHHHHHHHHHHh--
Confidence 4568999999999999999999998643 22 222221 12221 1211 12222222 2222
Q ss_pred CCCCCceEEEEeCCCC----------H---HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--
Q psy12735 127 PGSKERKYILFDGDVD----------A---LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS-- 191 (233)
Q Consensus 127 ~~~~~~~~lvlDep~~----------~---~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is-- 191 (233)
..|.++++||.-+ . .....+..+|....... -..++-+|.-|..+..+-||++-
T Consensus 274 ---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~--------~~~~ViVIaATNrpd~LDpALlRpG 342 (437)
T 4b4t_I 274 ---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--------DRGDVKVIMATNKIETLDPALIRPG 342 (437)
T ss_dssp ---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC--------CSSSEEEEEEESCSTTCCTTSSCTT
T ss_pred ---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC--------CCCCEEEEEeCCChhhcCHHHhcCC
Confidence 3688999997421 0 01112334443321111 12346778889999999999874
Q ss_pred cce-EEEECCCCC-cchHHHHHHHhhc
Q psy12735 192 RAG-MVYVDPINL-GYQPYWTRWVNLN 216 (233)
Q Consensus 192 r~~-~v~~~~~~~-~~~~~~~swl~~~ 216 (233)
|+- .|+++.-+. .-..++..++.+.
T Consensus 343 RfD~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 343 RIDRKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp TEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred ceeEEEEcCCcCHHHHHHHHHHHhcCC
Confidence 664 466664333 2234555555544
No 243
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.66 E-value=2.4e-05 Score=61.89 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.65 E-value=2.4e-05 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+..++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356679999999999999999998754
No 245
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.65 E-value=2.6e-05 Score=67.40 Aligned_cols=26 Identities=27% Similarity=0.681 Sum_probs=23.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
....+.|.||+|+|||++.+.++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999865
No 246
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.0017 Score=54.86 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHhhc--ceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeEEeeeCCcccccccccccccCCCCcC-chhHHHHHHHHH
Q psy12735 46 YETMLTR--HSTMIVGPTGGGKSVVINALVKTSTVLGY-PARTYTLNPKAVSVIELYGVLNPETRDW-YDGLLSNIFRAV 121 (233)
Q Consensus 46 ~~~l~~~--~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~~~~~~~~~~~~~~l~g~~~~~~~~~-~~gi~~~~~~~~ 121 (233)
...++.+ +...+.||+|+||||+.+.++........ ...+..++ .....- .+.+.+ +...+
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~--------------~~~~~~~id~ir~-li~~~ 74 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID--------------PEGENIGIDDIRT-IKDFL 74 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC--------------CSSSCBCHHHHHH-HHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc--------------CCcCCCCHHHHHH-HHHHH
Confidence 3444444 36789999999999999999874211100 00111111 110010 112222 33333
Q ss_pred hcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhhcceEEEECCC
Q psy12735 122 NKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201 (233)
Q Consensus 122 ~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~isr~~~v~~~~~ 201 (233)
..... ..+.+++++||.- .+..+..+.++..... -+.+..+++-+++.+.+-|+..|| ++.+.+-
T Consensus 75 ~~~p~--~~~~kvviIdead-~lt~~a~naLLk~LEe----------p~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 75 NYSPE--LYTRKYVIVHDCE-RMTQQAANAFLKALEE----------PPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp TSCCS--SSSSEEEEETTGG-GBCHHHHHHTHHHHHS----------CCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred hhccc--cCCceEEEeccHH-HhCHHHHHHHHHHHhC----------CCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 22211 1357899999862 2223334444432111 124578899899999999999999 7777764
Q ss_pred CCcchHHHHHHHhhc
Q psy12735 202 NLGYQPYWTRWVNLN 216 (233)
Q Consensus 202 ~~~~~~~~~swl~~~ 216 (233)
.- .-+..|+.+.
T Consensus 140 ~~---~~i~~~L~~~ 151 (305)
T 2gno_A 140 VP---KEFRDLVKEK 151 (305)
T ss_dssp CC---HHHHHHHHHH
T ss_pred CH---HHHHHHHHHH
Confidence 32 3455666543
No 247
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.64 E-value=0.0013 Score=69.74 Aligned_cols=143 Identities=12% Similarity=0.136 Sum_probs=90.5
Q ss_pred CeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch
Q psy12735 32 YEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD 111 (233)
Q Consensus 32 l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 111 (233)
+..+|-.-.-.+.+..++..+.++++.||+|+|||+++|.|++++ |.++.....+. .++..+
T Consensus 625 lViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e-~ld~~~-------------- 686 (2695)
T 4akg_A 625 LIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDD-SFDYQV-------------- 686 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTS-SCCHHH--------------
T ss_pred ceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCC-CCChhH--------------
Confidence 566777666677788999999999999999999999999999965 44544433332 111111
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeCC--CCHHhHHhHHHHhh-------ccccccccCceEEEccCcceEEEEeCCc
Q psy12735 112 GLLSNIFRAVNKPLDPGSKERKYILFDGD--VDALWIENMNSVMD-------DNKILTLANGERIRLLAHCQLLFEVGDL 182 (233)
Q Consensus 112 gi~~~~~~~~~~~~~~~~~~~~~lvlDep--~~~~~~~~l~~~l~-------~~~~l~l~~g~~i~~~~~~~~i~et~dl 182 (233)
..+++..+++ .+.|++|||- .+..-...+.+.++ +........|+.+.+.+++.+++ |.|.
T Consensus 687 --lg~~~~g~~~-------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfi-T~NP 756 (2695)
T 4akg_A 687 --LSRLLVGITQ-------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFI-TLNP 756 (2695)
T ss_dssp --HHHHHHHHHH-------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEE-EECC
T ss_pred --hhHHHHHHHh-------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEE-EeCC
Confidence 1233333332 4579999995 23332233322222 22211223578888888877776 5554
Q ss_pred -----CccChhhhhcceEEEECCCC
Q psy12735 183 -----QYASPATVSRAGMVYVDPIN 202 (233)
Q Consensus 183 -----~~~sPa~isr~~~v~~~~~~ 202 (233)
..+..++-+||.-|+|..-+
T Consensus 757 gy~g~~eLP~~Lk~~Fr~v~m~~Pd 781 (2695)
T 4akg_A 757 GYNGRSELPENLKKSFREFSMKSPQ 781 (2695)
T ss_dssp CSSSSCCCCHHHHTTEEEEECCCCC
T ss_pred CccCcccccHHHHhheEEEEeeCCC
Confidence 35577888999999998543
No 248
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.63 E-value=2.6e-05 Score=65.68 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=25.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVL 79 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~ 79 (233)
.+..++|+|+|||||||+.+.|.+.+.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34578999999999999999999988754
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.62 E-value=3.2e-05 Score=59.55 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999865
No 250
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.62 E-value=3.2e-05 Score=58.93 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 251
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.61 E-value=0.00053 Score=65.15 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 22 ALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.+.+.+++.+-.+.+.+. ..+...+..++.++|+||+||||||++..+...
T Consensus 82 ~~~~~l~~r~~lP~~~q~---~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 82 KYVDILKIRRELPVHAQR---DEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHHTTSGGGGGH---HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHH---HHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344555555533444443 234455677889999999999999988877543
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.61 E-value=3e-05 Score=61.14 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++||||||+.+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999865
No 253
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.61 E-value=7e-05 Score=58.02 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeC
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLN 89 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~ 89 (233)
..++|+|++||||||+++.|.+.+...|.++......
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3589999999999999999998877666666554433
No 254
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.61 E-value=0.00024 Score=58.91 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCeehHHHHHHHHHHHHHH-hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 22 ALETVLKQDNYEMVPVQVDKVVQMYETM-LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~k~~ql~~~l-~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
-+.+.++-.++.+.. +..-+..+..-. ....++.|.||+|+|||++.++|+...
T Consensus 74 ~i~~~l~~qg~~~~~-~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 74 RIYKILELNGYDPQY-AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCCHHH-HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHH-HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 455566777777531 222233333322 224479999999999999999998854
No 255
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00031 Score=62.57 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=72.8
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCch---hHHHHHHHHHhcCC
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD---GLLSNIFRAVNKPL 125 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~---gi~~~~~~~~~~~~ 125 (233)
+...+++.|.||+|+|||++.+++++... .+ +..+.. .++++ .|.+ .....++.. ++.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~---~~--fi~vs~-----s~L~s-------k~vGesek~ir~lF~~-Ar~- 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD---AT--FIRVIG-----SELVQ-------KYVGEGARMVRELFEM-ART- 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT---CE--EEEEEG-----GGGCC-------CSSSHHHHHHHHHHHH-HHH-
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC---CC--eEEEEh-----HHhhc-------ccCCHHHHHHHHHHHH-HHh-
Confidence 35678999999999999999999998543 22 222221 12221 1221 112222222 222
Q ss_pred CCCCCCceEEEEeCCCC----------HHhHH---hHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh-
Q psy12735 126 DPGSKERKYILFDGDVD----------ALWIE---NMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS- 191 (233)
Q Consensus 126 ~~~~~~~~~lvlDep~~----------~~~~~---~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is- 191 (233)
..|.++++||.-+ +.... .+..+|....... -..++-+|.-|..+..+-||++-
T Consensus 301 ----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~ViVIaATNrpd~LDpALlRp 368 (467)
T 4b4t_H 301 ----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD--------PRGNIKVMFATNRPNTLDPALLRP 368 (467)
T ss_dssp ----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC--------CTTTEEEEEECSCTTSBCHHHHST
T ss_pred ----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC--------CCCcEEEEeCCCCcccCChhhhcc
Confidence 3688999998531 11111 1233333221111 12346678888899999999763
Q ss_pred -cc-eEEEECCCCCcc-hHHHHHHHhhc
Q psy12735 192 -RA-GMVYVDPINLGY-QPYWTRWVNLN 216 (233)
Q Consensus 192 -r~-~~v~~~~~~~~~-~~~~~swl~~~ 216 (233)
|+ ..|+++.-+..- ..++..++.+.
T Consensus 369 GRFD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 369 GRIDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp TTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred ccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 55 355665433322 24445555443
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.60 E-value=3.2e-05 Score=60.92 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+.++|+||||||||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999987644
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=1.5e-05 Score=76.22 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=66.5
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCC
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGS 129 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 129 (233)
..+.+++|+||||+||||+++++++.... .+ ..++ ..++.+.+.. . ..+....+++....
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~---~~--i~v~-----~~~l~~~~~g---~-~~~~i~~~f~~a~~------ 568 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA---NF--ISIK-----GPELLTMWFG---E-SEANVREIFDKARQ------ 568 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTC---CC--CCCC-----CSSSTTCCTT---T-SSHHHHHHHHHHHH------
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCC---CE--EEEe-----chHhhhhhcC---c-cHHHHHHHHHHHHh------
Confidence 35677999999999999999999997632 11 1111 1122211100 1 11222233332221
Q ss_pred CCceEEEEeCCCC----------H---HhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cce
Q psy12735 130 KERKYILFDGDVD----------A---LWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAG 194 (233)
Q Consensus 130 ~~~~~lvlDep~~----------~---~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~ 194 (233)
..|.++++||.-. . .....++.++..... +.-..++.++.-|+....+.|+++. ||.
T Consensus 569 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~--------~~~~~~v~vI~tTN~~~~ld~allrpgRf~ 640 (806)
T 1ypw_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG--------MSTKKNVFIIGATNRPDIIDPAILRPGRLD 640 (806)
T ss_dssp HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCCBSCGGGSCTTSSGGGTT
T ss_pred cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhc--------ccccCCeEEEEecCCcccCCHHHhCccccC
Confidence 2467899998311 0 111223444433211 1122356677777778889999987 886
Q ss_pred -EEEECCC
Q psy12735 195 -MVYVDPI 201 (233)
Q Consensus 195 -~v~~~~~ 201 (233)
.+|+...
T Consensus 641 ~~i~~~~p 648 (806)
T 1ypw_A 641 QLIYIPLP 648 (806)
T ss_dssp SCCCCCCC
T ss_pred ceeecCCC
Confidence 7777753
No 258
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.59 E-value=3.1e-05 Score=61.11 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.59 E-value=3.2e-05 Score=60.43 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++|+|++|||||||++.+.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 260
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.58 E-value=0.00019 Score=56.40 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
..+.|.||+|+||||+++.++......+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 689999999999999999999877655555543
No 261
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.58 E-value=5.2e-05 Score=59.12 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..+..++|+|++||||||+.+.|+..+
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46677889999999999999999998754
No 262
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.57 E-value=3.9e-05 Score=60.21 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++|||||||++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.56 E-value=5.8e-05 Score=60.06 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=27.8
Q ss_pred HHHHhhcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 46 YETMLTRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 46 ~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
...+..+..++|+|++||||||+.+.|++.+.
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566778899999999999999999999876
No 264
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.54 E-value=5.4e-05 Score=61.39 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=29.9
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
+..+..++|.|++||||||+++.|+..+.. ++.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 345677999999999999999999998877 666544
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.53 E-value=9.1e-05 Score=57.36 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=24.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
+..++|.|++||||||+.+.|+..+...|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45799999999999999999998665433
No 266
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.52 E-value=7.9e-05 Score=64.34 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=30.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeee
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTL 88 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~ 88 (233)
.|+.+.|.||+||||||++..++......++.+.+...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 78899999999999999988887655555666655443
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.51 E-value=6e-05 Score=63.24 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+|||||||||+.+.|+..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999998754
No 268
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00028 Score=60.86 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++++|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 269
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.49 E-value=9.1e-05 Score=57.37 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
.++|.|++||||||+.+.|+..+...+..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 34 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEE
Confidence 48999999999999999999877654544443
No 270
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.49 E-value=0.00011 Score=70.51 Aligned_cols=36 Identities=17% Similarity=0.472 Sum_probs=26.7
Q ss_pred HHHHHHHhh--cceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 43 VQMYETMLT--RHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 43 ~ql~~~l~~--~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
.++.+.+.. ...++|+||+|+||||+++.+++....
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 333344433 346899999999999999999987643
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.49 E-value=6.9e-05 Score=58.53 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+..+..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445667789999999999999999998855
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.48 E-value=6.6e-05 Score=58.16 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998754
No 273
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=4.8e-05 Score=59.17 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999998754
No 274
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.46 E-value=0.0019 Score=57.36 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=32.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
...++++|++|+||||++..|+..+...|.++.+...++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356899999999999999999988877777777766655
No 275
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.46 E-value=7.7e-05 Score=59.00 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=28.1
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
+..+..++|.|++||||||+.+.|+..+...+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34567899999999999999999998776555554
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.46 E-value=5.7e-05 Score=59.32 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=23.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999999865
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.45 E-value=6.3e-05 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 278
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.44 E-value=7.7e-05 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+|+|||||||||++.++.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999997644
No 279
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.43 E-value=2.5e-05 Score=61.88 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
.++|.|++||||||+++.|++.+...+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 489999999999999999998876544443
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=8.2e-05 Score=57.24 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 281
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.41 E-value=7.4e-05 Score=57.31 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|+|++|+|||||++.+.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998753
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.41 E-value=9e-05 Score=58.53 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
..+..++|.|++||||||+.+.|+..+...+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3466799999999999999999998765444444
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.40 E-value=8.8e-05 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++|.|++||||||+.+.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 489999999999999999998653
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=8.2e-05 Score=56.48 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChHHHHHHH
Q psy12735 54 STMIVGPTGGGKSVVINAL 72 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L 72 (233)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 285
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.40 E-value=8.6e-05 Score=65.68 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.2
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
.++.++|+|||||||||+++++.++..+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4667999999999999999999987643
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00012 Score=57.62 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=25.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLG 80 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~ 80 (233)
.+..++|.|++||||||+.+.|+..+...+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 355799999999999999999998775544
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.39 E-value=7.7e-05 Score=59.50 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
+..++|+|++||||||+.+.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999987
No 288
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.39 E-value=0.0004 Score=51.87 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=28.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
...+..+.|.||+|+|||++.+.+.......+.++.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 356778999999999999999999886554454443
No 289
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.38 E-value=9.9e-05 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
....++|.||+||||||+.+.|++.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999998654
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.38 E-value=9.6e-05 Score=56.66 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|.|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.38 E-value=0.0001 Score=57.37 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.+..++|+|++||||||+.+.|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999885
No 292
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.37 E-value=6.3e-05 Score=65.94 Aligned_cols=28 Identities=32% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.+..+..++|+|+||+|||||+++|.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3456778999999999999999999983
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.36 E-value=0.00016 Score=60.96 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=34.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
+..++++|++|+||||++..|++.+...++++.+...++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4578999999999999999999998888888888777754
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.36 E-value=0.00017 Score=62.24 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=29.4
Q ss_pred HHHHHHHHH-HHHhhcce--EEEEcCCCCChHHHHHHHHhhhh
Q psy12735 38 QVDKVVQMY-ETMLTRHS--TMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 38 ~~~k~~ql~-~~l~~~~~--v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++++++.. ..+..++. ++|+|++||||||+.++|++.+.
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344455544 33455655 99999999999999999998653
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.36 E-value=0.00018 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=25.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
.++|.|++||||||+.+.|+..+...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4899999999999999999987765565553
No 296
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.36 E-value=0.0001 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998743
No 297
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.35 E-value=0.00011 Score=64.29 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhhc
Q psy12735 41 KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVL 79 (233)
Q Consensus 41 k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~ 79 (233)
+++.+...+..|+.++|+||+|+|||||++.+++.....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 888999999999999999999999999999999877543
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.35 E-value=0.0002 Score=63.45 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=35.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcc
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~ 92 (233)
++.++++|++||||||++..|++.+...++.+.+...++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 45789999999999999999999998888888887777543
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.34 E-value=0.00033 Score=62.40 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeee
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTL 88 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~ 88 (233)
-+..|..++|.|+||+||||++..++..... .|.++.+...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3567889999999999999999988876654 3556666554
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=0.0001 Score=60.57 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|||||||||+.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999999998754
No 301
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.32 E-value=0.0015 Score=69.87 Aligned_cols=166 Identities=19% Similarity=0.353 Sum_probs=101.2
Q ss_pred CChhHHHHHHHHHHH-------HCCCeehHHHHHHHHHHHHHHhh-cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 14 VSYPEFTAALETVLK-------QDNYEMVPVQVDKVVQMYETMLT-RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 14 ~~~~~~~~~~~~~~~-------~~~l~~~~~~~~k~~ql~~~l~~-~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
+++.++.+.+.+.++ ++++++-+.-++.+..+.+.+.+ +....+||..||||.||.++.+-.. +..+.
T Consensus 1600 v~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~vf- 1675 (3245)
T 3vkg_A 1600 VNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMN---GLSIY- 1675 (3245)
T ss_dssp CCHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHT---TCEEE-
T ss_pred CCHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHh---CCeeE-
Confidence 355667776666654 56788888899999999999976 4457899999999999999987643 22221
Q ss_pred eeeCCcccccccccccccCCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCC--CCHHhHHhHHHHhhccccccc--
Q psy12735 86 YTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD--VDALWIENMNSVMDDNKILTL-- 161 (233)
Q Consensus 86 ~~~~~~~~~~~~l~g~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep--~~~~~~~~l~~~l~~~~~l~l-- 161 (233)
.+. ..+-|| ..+|.+.+..-+ ++.+. ..++-+++|++. .+..+.|.+|.+|..+..-.+
T Consensus 1676 -qi~-----i~k~Y~-----~~~f~eDLk~l~-~~aG~-----~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~ 1738 (3245)
T 3vkg_A 1676 -TIK-----VNNNYK-----SSDFDDDLRMLL-KRAGC-----KEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFE 1738 (3245)
T ss_dssp -CCC---------CC-----HHHHHHHHHHHH-HHHHT-----SCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSC
T ss_pred -EEe-----eeCCCC-----HHHHHHHHHHHH-HHHhc-----CCCCEEEEEeccccccHHHHHHHHHHhccCCccccCC
Confidence 111 112222 124555554433 33322 246777888764 455667777766642211111
Q ss_pred ----------------cCce------------EEEccCcceEEEEeCCcC-------ccChhhhhcceEEEECC
Q psy12735 162 ----------------ANGE------------RIRLLAHCQLLFEVGDLQ-------YASPATVSRAGMVYVDP 200 (233)
Q Consensus 162 ----------------~~g~------------~i~~~~~~~~i~et~dl~-------~~sPa~isr~~~v~~~~ 200 (233)
..|- +-.+..|+++++-++... ...||++++|.|-|+.+
T Consensus 1739 ~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctIDWf~~ 1812 (3245)
T 3vkg_A 1739 GEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGE 1812 (3245)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCceeeecCC
Confidence 1110 011346889999776554 34699999999999996
No 302
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.32 E-value=0.0019 Score=60.98 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=23.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.+..+.|+||+|+||||+++.++..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998664
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.29 E-value=0.001 Score=63.29 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=64.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCcccccccccccccCCCCcCchh---HHHHHHHHHhcCCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDG---LLSNIFRAVNKPLDP 127 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~~~~~~~l~g~~~~~~~~~~~g---i~~~~~~~~~~~~~~ 127 (233)
...++.|.||+|+|||++++.+++.. +.+ +..++ ..++.+ .|.+. .+..++.. ++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el---g~~--~~~v~-----~~~l~s-------k~~gese~~lr~lF~~-A~---- 294 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAF--FFLIN-----GPEIMS-------KLAGESESNLRKAFEE-AE---- 294 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT---TCE--EEEEE-----HHHHHS-------SCTTHHHHHHHHHHHH-HT----
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCe--EEEEE-----hHHhhc-------ccchHHHHHHHHHHHH-HH----
Confidence 45689999999999999999999854 222 22222 112222 12221 12222222 22
Q ss_pred CCCCceEEEEeCCCC----------HHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcCccChhhhh--cce-
Q psy12735 128 GSKERKYILFDGDVD----------ALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVS--RAG- 194 (233)
Q Consensus 128 ~~~~~~~lvlDep~~----------~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~~~sPa~is--r~~- 194 (233)
...|.++++||--+ ......+++++.....+. -..++-+|.-|..+..+.||+.. |+-
T Consensus 295 -~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~--------~~~~V~VIaaTN~~d~LD~ALrR~GRFd~ 365 (806)
T 3cf2_A 295 -KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--------QRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp -TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC--------GGGCEEEEEECSSTTTSCTTTTSTTSSCE
T ss_pred -HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc--------ccCCEEEEEecCChhhcCHHHhCCcccce
Confidence 24689999998421 011112233332221111 11246677888899999999765 553
Q ss_pred EEEECC
Q psy12735 195 MVYVDP 200 (233)
Q Consensus 195 ~v~~~~ 200 (233)
.|++..
T Consensus 366 ~I~i~~ 371 (806)
T 3cf2_A 366 EVDIGI 371 (806)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 466654
No 304
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.00022 Score=57.65 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=24.9
Q ss_pred HHHHHHhhcceEEEEcCCCCChHHHHHHHH
Q psy12735 44 QMYETMLTRHSTMIVGPTGGGKSVVINALV 73 (233)
Q Consensus 44 ql~~~l~~~~~v~lvGpsGsGKSTlik~L~ 73 (233)
+....+..++.+++.||+||||||++....
T Consensus 68 ~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 68 EILEAISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 445667789999999999999999887664
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.27 E-value=0.00018 Score=59.27 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=26.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
....++|+|++||||||+.+.|+..+...|..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~ 35 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDV 35 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 345689999999999999999998765445443
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.27 E-value=0.00021 Score=55.39 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCe
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPA 83 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i 83 (233)
.++|.|++||||||+.+.|+..+...|.++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 489999999999999999998765445443
No 307
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00011 Score=63.60 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=23.5
Q ss_pred CCceEEEEeCCCCHHhHHhHHHHhhcccc
Q psy12735 130 KERKYILFDGDVDALWIENMNSVMDDNKI 158 (233)
Q Consensus 130 ~~~~~lvlDep~~~~~~~~l~~~l~~~~~ 158 (233)
.+|.+++||||++++|+.....+++....
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 37899999999999999888887776543
No 308
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.26 E-value=0.00015 Score=54.87 Aligned_cols=68 Identities=13% Similarity=-0.049 Sum_probs=47.7
Q ss_pred CCCCcCchhHHHHHHHH----HhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEe
Q psy12735 104 PETRDWYDGLLSNIFRA----VNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEV 179 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~----~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et 179 (233)
.....+++|..+++.-. ++++.. .+|++++||||++++|++....+.+....+.-. | ..+++.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~--------~tiiivs 120 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIMERYLKK-I--------PQVILVS 120 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHH---SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-S--------SEEEEEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHc---CCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-C--------CEEEEEE
Confidence 34567899999998321 123322 479999999999999999988877665443222 2 4677888
Q ss_pred CCcC
Q psy12735 180 GDLQ 183 (233)
Q Consensus 180 ~dl~ 183 (233)
||..
T Consensus 121 H~~~ 124 (148)
T 1f2t_B 121 HDEE 124 (148)
T ss_dssp SCGG
T ss_pred ChHH
Confidence 8873
No 309
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.26 E-value=0.00029 Score=63.03 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCCCcCCCCChhHHHHHHHHHHHHCCCeehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 6 FPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 6 Fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
||. +++..+...+.+.+.+..+++.-..... +--+.+..+-.|+|+|++|+|||||++.|.+.
T Consensus 185 f~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~------~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 185 FEE-DLPPLDDEAIISDIENIAAEISQLLATK------DKGELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp SSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTH------HHHHHHHHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccc-cCChhhHHHHHHHHHHHHHHHHHHHHHh------hhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 555 5555555555554444433322111111 11234456677999999999999999999874
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=0.00019 Score=62.09 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=30.7
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 86 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~ 86 (233)
.|..+.|+||+|||||||+..++......++.+.+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 677899999999999999999998877777776553
No 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.26 E-value=0.00013 Score=56.35 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 312
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=9.7e-05 Score=60.61 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.+..++|+|+|||||||+.+.|++.+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999998653
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.24 E-value=0.00017 Score=57.26 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997754
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00017 Score=55.88 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998754
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.24 E-value=0.00015 Score=56.79 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++|+|++||||||+.+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999884
No 316
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.00018 Score=55.41 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.21 E-value=0.0002 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.21 E-value=0.0002 Score=57.16 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999998855
No 319
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.20 E-value=0.0002 Score=55.36 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998754
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00027 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.9
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.....++|.||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345569999999999999999998754
No 321
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00021 Score=57.86 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+..++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999754
No 322
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.20 E-value=0.00031 Score=61.18 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=26.5
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeE
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPAR 84 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~ 84 (233)
.+..++|+|||||||||+++.+.......++.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 3556899999999999999999876555555443
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.19 E-value=0.0002 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998644
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00019 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
....++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998754
No 325
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.18 E-value=0.0012 Score=53.36 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=24.4
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
-..|..+.+.|+.|+||||++--++.-+...+..+.+
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 3557778999999999999765554444444555544
No 326
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.18 E-value=0.00017 Score=60.58 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
+..++|.||+||||||+.+.|+..+...+..+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~v 38 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 38 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeE
Confidence 4568999999999999999999866544443433
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.17 E-value=0.00018 Score=57.46 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998765
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.16 E-value=0.00026 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 329
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.15 E-value=0.00024 Score=56.43 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..+|+|||||||||++.++.-++
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987654
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.15 E-value=0.00022 Score=57.42 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.2
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+...+.++|+||+||||+|..+.|+..+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556678899999999999999999865
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.15 E-value=0.00018 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=17.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998754
No 332
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00026 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++||||||+.+.|+..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998755
No 333
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.13 E-value=0.00089 Score=58.09 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHCCCee------h---HHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 17 PEFTAALETVLKQDNYEM------V---PVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~------~---~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++.+.+++.+++.++.+ + ..-++.+.+.......+..++++|.+|+||||+++.|.+.
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhh
Confidence 456666667778887721 1 1123455555555556788999999999999999999986
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00028 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998854
No 335
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.11 E-value=0.00026 Score=55.04 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
...++++|++|+|||||++.+.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999886
No 336
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.10 E-value=0.0003 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999998855
No 337
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.10 E-value=0.00011 Score=64.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+.+..++|+|+||||||||++.|++..
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 344569999999999999999999873
No 338
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.10 E-value=0.0012 Score=57.28 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHhhh
Q psy12735 55 TMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 55 v~lvGpsGsGKSTlik~L~~~~ 76 (233)
++|+|++|+|||||++.|.+..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999999864
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.08 E-value=0.00029 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998754
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.00032 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|.|++||||||+.+.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998654
No 341
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.05 E-value=0.00032 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
-.++|+|++|+|||||++.|.+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3589999999999999999988543
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.03 E-value=0.00035 Score=57.11 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++|.|++||||||+.+.|+..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988543
No 343
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.02 E-value=0.00067 Score=54.34 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=30.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEe
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTY 86 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~ 86 (233)
.|..+++.|++||||||+++.|...+...+..+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467799999999999999999998887766666443
No 344
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.02 E-value=0.0013 Score=56.69 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
..++|+|++|+||||+++.|+..+...|.++.+...++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 368999999999999999999887666777776666653
No 345
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.01 E-value=0.00037 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..++|+|++||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999875
No 346
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.00 E-value=0.00033 Score=59.08 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999875
No 347
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.99 E-value=0.00049 Score=55.77 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhhhhhc----CCCeEE
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKTSTVL----GYPART 85 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~----~~~i~~ 85 (233)
.+..|..+++.|++||||||+++.|...+... +..+..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~ 62 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV 62 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee
Confidence 34567889999999999999999999877655 666543
No 348
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.0016 Score=54.97 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh-hcCCCeEE
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST-VLGYPART 85 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~-~~~~~i~~ 85 (233)
+..+.|.||+|+|||+|+++++.... ..+..+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 57899999999999999999998776 65655544
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00045 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998865
No 350
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.98 E-value=0.00044 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 351
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00041 Score=55.16 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 352
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.00046 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 353
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.95 E-value=0.0018 Score=56.21 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHCCCe---eh------HHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 17 PEFTAALETVLKQDNYE---MV------PVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 17 ~~~~~~~~~~~~~~~l~---~~------~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++.+.+++.+++.++. +. ..-++.+.+.......+..++++|.+|+||||+++.|.+..
T Consensus 116 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhh
Confidence 35566666677777772 11 12234555555555567889999999999999999998863
No 354
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00047 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++++|++|+||||+++.+.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 355
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.95 E-value=0.00039 Score=57.45 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++|||||||++.|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 356
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.94 E-value=0.0005 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988753
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00048 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998755
No 358
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.94 E-value=0.00039 Score=51.86 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.7
Q ss_pred HhhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 49 MLTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 49 l~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
......+.|.||+|+|||++.+.+....
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3557789999999999999999987743
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00046 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 360
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.94 E-value=0.00051 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+||||+++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00054 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++++|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.91 E-value=0.00056 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999763
No 363
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.91 E-value=0.0018 Score=58.16 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=23.6
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
+.+..+-.|+|+|++|+|||||++.|.+.
T Consensus 228 ~~~r~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHHHCEEEEEECCTTSSHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566777999999999999999999874
No 364
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.00084 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
..-.++++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999985
No 365
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.89 E-value=0.00054 Score=51.76 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999864
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.88 E-value=0.00061 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00062 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+..++|+|++||||||+.+.|+..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998865
No 368
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.88 E-value=0.00061 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 369
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.87 E-value=0.00055 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
+..++|+||||+||||+...|+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999988764
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.87 E-value=0.00061 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 371
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.87 E-value=0.00063 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.87 E-value=0.00057 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999763
No 373
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.87 E-value=0.00062 Score=51.15 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.87 E-value=0.00044 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998763
No 375
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.86 E-value=0.00063 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988763
No 376
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.86 E-value=0.0006 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999753
No 377
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.86 E-value=0.00061 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++++|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999763
No 378
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.83 E-value=0.00058 Score=60.53 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|+||+|||||++.|.+..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.82 E-value=0.00064 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 380
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.82 E-value=0.00059 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.8
Q ss_pred hcceEEEEcCCCCChHHHHHHHHh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
..-.++++|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344699999999999999999965
No 381
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.82 E-value=0.00062 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..++|+|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999864
No 382
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.81 E-value=0.0012 Score=53.71 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=28.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCCC
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGYP 82 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~ 82 (233)
.+..+++.|++||||||+++.|...+...+.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 57789999999999999999999988776766
No 383
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.80 E-value=0.00079 Score=60.16 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 41 KVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 41 k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
|++.....+..|+.++|+||+|+|||||++.++.....
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 67888888888999999999999999999999876543
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.80 E-value=0.00077 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.79 E-value=0.0013 Score=52.62 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=28.3
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhhcCC-CeE
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTVLGY-PAR 84 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~-~i~ 84 (233)
.|..+++-|++||||||.++.|...+...+. .+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~ 36 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce
Confidence 3667999999999999999999988877665 443
No 386
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.78 E-value=0.00078 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.78 E-value=0.0008 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 388
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.77 E-value=0.00071 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.77 E-value=0.00078 Score=57.81 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
..++|+||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3689999999999999999988653
No 390
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.00062 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 391
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.77 E-value=0.0008 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 392
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.76 E-value=0.00083 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 393
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.76 E-value=0.0032 Score=56.06 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHCCCe-ehHHHHHHHHHHHHHHhhcc-eEEEEcCCCCChHHHHHHHHhhhhhcCC
Q psy12735 27 LKQDNYE-MVPVQVDKVVQMYETMLTRH-STMIVGPTGGGKSVVINALVKTSTVLGY 81 (233)
Q Consensus 27 ~~~~~l~-~~~~~~~k~~ql~~~l~~~~-~v~lvGpsGsGKSTlik~L~~~~~~~~~ 81 (233)
...+.|. +++++...+..+...+..+. .+.|.|++|+||||+++.+...+...+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 4455665 66677756666666676666 8999999999999999999887765554
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.75 E-value=0.00077 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred hcceEEEEcCCCCChHHHHHHHHh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
.|.+++|.|+||+||||+...|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999987765
No 395
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.75 E-value=0.00088 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999875
No 396
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.75 E-value=0.0008 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.|+|+|.+|+|||||++.+.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999999874
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.75 E-value=0.00089 Score=50.75 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.75 E-value=0.00069 Score=56.47 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++||||||+.+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 399
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.75 E-value=0.0026 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
|.+++|+|+||+||||+...|.+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 88999999999999999988876
No 400
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.74 E-value=0.00074 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 401
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.73 E-value=0.00052 Score=53.75 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.73 E-value=0.00078 Score=55.97 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++|+|||||++.+.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999853
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.00083 Score=56.06 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999873
No 404
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.73 E-value=0.00085 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++|+|++|+|||||++.+.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.72 E-value=0.0008 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+||+|||||||...|+..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999855
No 406
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.72 E-value=0.00081 Score=59.63 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
..++++|++|+||||++..|++.+...|.++.+...++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 368999999999999999999888777777777666653
No 407
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.72 E-value=0.00094 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999764
No 408
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.72 E-value=0.00096 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00096 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.71 E-value=0.00085 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+||+||||||+.+.|+..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999854
No 411
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.71 E-value=0.00096 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
.++|+|++|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999987553
No 412
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.70 E-value=0.00068 Score=52.15 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999764
No 413
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.70 E-value=0.00095 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++++|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.70 E-value=0.001 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..++++|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999999763
No 415
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.70 E-value=0.00081 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|.+|+|||||++.|.+..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 59999999999999999998753
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.69 E-value=0.00094 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++|+|||||||||+...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3468999999999999999998754
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.68 E-value=0.001 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 418
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.00096 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++|||||||++.|.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998853
No 419
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.66 E-value=0.0013 Score=54.38 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHHHHHHhhc-ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 42 VVQMYETMLTR-HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 42 ~~ql~~~l~~~-~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
+-++.+.+... ..++++|.+|+||||+++.|.+..
T Consensus 88 i~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhccc
Confidence 44566666655 689999999999999999998754
No 420
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.65 E-value=0.001 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998763
No 421
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 422
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.65 E-value=0.00096 Score=57.47 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++||||||+++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999983
No 423
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.64 E-value=0.0021 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.2
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..+..++|.||.|+||||+++.+...
T Consensus 29 ~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 29 ENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 33577999999999999999998764
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.64 E-value=0.0011 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++||||||+.+.|+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998754
No 425
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.63 E-value=0.0029 Score=58.12 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHhhcceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEE
Q psy12735 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85 (233)
Q Consensus 47 ~~l~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~ 85 (233)
..+..+..++|.|++|+||||+++.+...+...+..+..
T Consensus 199 ~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 199 DQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp HHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 334467889999999999999999999887766666554
No 426
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.63 E-value=0.0012 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 427
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.0011 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999976654
No 428
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.63 E-value=0.0023 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.|.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.63 E-value=0.0012 Score=50.90 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 430
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.62 E-value=0.0011 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 431
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.62 E-value=0.0012 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 432
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.0044 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++|+|++|+||||+++.|.+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988764
No 433
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.61 E-value=0.0028 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
++++.+.||+|+|||++.+.++..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 35799999999999999999998653
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 435
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0011 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999763
No 436
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.60 E-value=0.00087 Score=55.47 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++|+|||||++.|.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999865
No 437
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.59 E-value=0.0013 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998875
No 438
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.59 E-value=0.0012 Score=58.22 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
...++|+|++||||||+.+.|+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998743
No 439
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.00063 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~ 74 (233)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999998874
No 440
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.59 E-value=0.12 Score=44.59 Aligned_cols=184 Identities=13% Similarity=0.167 Sum_probs=101.4
Q ss_pred CCChhHHHHHHHHHHHHCCC----------eehHHHHHHHHHHHHHH-hhcceEEEEcCCCCChHHHHHHHHhhhhhcCC
Q psy12735 13 RVSYPEFTAALETVLKQDNY----------EMVPVQVDKVVQMYETM-LTRHSTMIVGPTGGGKSVVINALVKTSTVLGY 81 (233)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~k~~ql~~~l-~~~~~v~lvGpsGsGKSTlik~L~~~~~~~~~ 81 (233)
..+..++..+++.+++.... .-......++.+....+ .....+.+.|++|+||+++.+.+.......+.
T Consensus 102 P~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~ 181 (368)
T 3dzd_A 102 PFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGA 181 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC
T ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCC
Confidence 35566788888887764332 11222334555555444 44567999999999999999999876544333
Q ss_pred CeEEeeeCCcc----cccccccccccCC---CCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCC--CHHhHHhHHHH
Q psy12735 82 PARTYTLNPKA----VSVIELYGVLNPE---TRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV--DALWIENMNSV 152 (233)
Q Consensus 82 ~i~~~~~~~~~----~~~~~l~g~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~--~~~~~~~l~~~ 152 (233)
+..++-.+ .-..++||..... ......|.++.. +...+++||.- +......+-.+
T Consensus 182 ---fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a-------------~~gtlfldei~~l~~~~Q~~Ll~~ 245 (368)
T 3dzd_A 182 ---FVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA-------------DQGTLFLDEVGELDQRVQAKLLRV 245 (368)
T ss_dssp ---EEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT-------------TTSEEEEETGGGSCHHHHHHHHHH
T ss_pred ---cEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc-------------CCCeEEecChhhCCHHHHHHHHHH
Confidence 33333222 2233567654211 122344554432 23468999863 33333344445
Q ss_pred hhccccccccCceEEEccCcceEEEEeC-CcC------ccChhhhhcceEEEEC--C---CCCcchHHHHHHHh
Q psy12735 153 MDDNKILTLANGERIRLLAHCQLLFEVG-DLQ------YASPATVSRAGMVYVD--P---INLGYQPYWTRWVN 214 (233)
Q Consensus 153 l~~~~~l~l~~g~~i~~~~~~~~i~et~-dl~------~~sPa~isr~~~v~~~--~---~~~~~~~~~~swl~ 214 (233)
+++.....+.+.+ .+.-++++|.-|+ |+. ...+.+..|+..+.+. | ..-....++..++.
T Consensus 246 l~~~~~~~~g~~~--~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 246 LETGSFTRLGGNQ--KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHSEECCBTCCC--BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHhCCcccCCCCc--ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 5554332232222 2345689999875 444 3456788888876643 3 11233455555554
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.++|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999998764
No 442
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.58 E-value=0.0013 Score=50.62 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++|+|++|+|||||++.+.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999875
No 443
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.58 E-value=0.00092 Score=58.55 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHhhcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 48 TMLTRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 48 ~l~~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.+..+..++|+|+||+|||||++.|.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4455677999999999999999999975
No 444
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.58 E-value=0.014 Score=52.72 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.1
Q ss_pred eEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCC
Q psy12735 54 STMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNP 90 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~ 90 (233)
.++|+|++|+||||++..|+..+...|.++.+...++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 6899999999999999999987766666776665554
No 445
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.56 E-value=0.0014 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 446
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.55 E-value=0.0012 Score=50.60 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=21.6
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..-.++++|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456999999999999999999864
No 447
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.55 E-value=0.00091 Score=57.85 Aligned_cols=22 Identities=50% Similarity=0.727 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 448
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.55 E-value=0.0015 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.++++|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998753
No 449
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999998864
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.54 E-value=0.0024 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 451
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 345899999999999999999864
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.54 E-value=0.002 Score=51.94 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhhhhh-cCCCeEEeeeCCc
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKTSTV-LGYPARTYTLNPK 91 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~~~~-~~~~i~~~~~~~~ 91 (233)
.+..+++.|++||||||+++.|...+.. .|..+....-.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4667899999999999999999988876 6666655233443
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.54 E-value=0.0015 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 454
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.54 E-value=0.0014 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999874
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.53 E-value=0.0015 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999886
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.52 E-value=0.0015 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.++|+|++|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999753
No 457
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.52 E-value=0.0013 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+||+|||||||...|+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 358999999999999999998754
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.52 E-value=0.00094 Score=52.15 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
.++|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999865
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0016 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.0014 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 461
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.50 E-value=0.0062 Score=47.43 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCe-ehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHH
Q psy12735 20 TAALETVLKQDNYE-MVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVI 69 (233)
Q Consensus 20 ~~~~~~~~~~~~l~-~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTli 69 (233)
.+.+.+.+++.++. +.+.+. ++ ...+..++.+++.+|+|||||..+
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q~-~~---i~~~~~~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQA-AA---LPLALEGKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHHH-HH---HHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHH-HH---HHHHcCCCCEEEECCCCChHHHHH
Confidence 34566677888984 777776 33 345567888999999999999863
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0016 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998763
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.50 E-value=0.0016 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999998864
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998763
No 465
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.49 E-value=0.0014 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.|+|+|++|+|||||++.+.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 466
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.49 E-value=0.0015 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++|+|||||++.|.+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998743
No 467
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0015 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 468
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0031 Score=57.03 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.+.+.|.||+|+||||+++.+++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999865
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.48 E-value=0.0017 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998753
No 470
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 471
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.46 E-value=0.0014 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.46 E-value=0.0014 Score=52.71 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.3
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTSTV 78 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~~~ 78 (233)
..|..+++-|++||||||.++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45778999999999999999999987654
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0013 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 474
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.45 E-value=0.0015 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999763
No 475
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.45 E-value=0.0015 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.45 E-value=0.0032 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
..++|+|++|+||||+++-+....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887654
No 477
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888753
No 478
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0016 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++++|++|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999863
No 479
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.44 E-value=0.0013 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...|+|+|++|+|||||++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999763
No 480
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.44 E-value=0.0019 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++++|++|+|||||++.+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998763
No 481
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.44 E-value=0.0013 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998763
No 482
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.43 E-value=0.0016 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
-.++|+|.+|||||||++.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 483
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.42 E-value=0.0017 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++|+|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 484
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.42 E-value=0.0038 Score=50.72 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHhhhhhcCCCeEEeeeCCc
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~~~~~~~~i~~~~~~~~ 91 (233)
..++++|..|+||||++..|+..+. .+.++.+...++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 4579999999999999999998777 6777777666664
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.41 E-value=0.0018 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|.+|+|||||++.+.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 486
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.41 E-value=0.0013 Score=63.36 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=50.0
Q ss_pred CCCCcCchhHHHHHHHHHhcCCCCCCCCceEEEEeCCCCHHhHHhHHHHhhccccccccCceEEEccCcceEEEEeCCcC
Q psy12735 104 PETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQ 183 (233)
Q Consensus 104 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~lvlDep~~~~~~~~l~~~l~~~~~l~l~~g~~i~~~~~~~~i~et~dl~ 183 (233)
+.....|+|..+++ +++++... ..++.+++||||++++|+.....+++..+.+.-. | .++++.+||+.
T Consensus 460 r~~~~LSGGe~QRv--~LAraL~~-~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G--------~TvivVtHd~~ 527 (916)
T 3pih_A 460 RSATTLSGGESQRI--RLATQIGS-GLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-G--------NTVIVVEHDEE 527 (916)
T ss_dssp SBGGGCCHHHHHHH--HHHHHHHT-TCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-T--------CEEEEECCCHH
T ss_pred CCcccCCHHHHHHH--HHHHHHhh-CCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-C--------CEEEEEeCCHH
Confidence 44568899999999 66655431 1245599999999999999988888776665433 3 46677777765
Q ss_pred cc
Q psy12735 184 YA 185 (233)
Q Consensus 184 ~~ 185 (233)
.+
T Consensus 528 ~~ 529 (916)
T 3pih_A 528 VI 529 (916)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 487
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.39 E-value=0.0019 Score=54.55 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.|+|+|++|+|||||++.|.+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999874
No 488
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.39 E-value=0.0012 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.-.++++|++|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999997654
No 489
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.37 E-value=0.0019 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy12735 54 STMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998763
No 490
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.37 E-value=0.002 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=20.4
Q ss_pred hcceEEEEcCCCCChHHHHHHHHhh
Q psy12735 51 TRHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 51 ~~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
..-.++++|++|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999998753
No 491
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.36 E-value=0.0072 Score=47.07 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHHHCCCe-ehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHH
Q psy12735 20 TAALETVLKQDNYE-MVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVIN 70 (233)
Q Consensus 20 ~~~~~~~~~~~~l~-~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik 70 (233)
...+.+.+++.++. +.+.+. + ....+..++.+++.+|+|||||..+-
T Consensus 11 ~~~l~~~l~~~g~~~~~~~Q~-~---~i~~~~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 11 KRELLMGIFEMGWEKPSPIQE-E---SIPIALSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CHHHHHHHHTTTCCSCCHHHH-H---HHHHHHTTCCEEEECCSSSTTHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHH-H---HHHHHccCCCEEEECCCCCchHHHHH
Confidence 34566777889985 777776 3 33455678889999999999996543
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.35 E-value=0.002 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHhh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
-.++++|++|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.0019 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++++|++|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3599999999999999999975
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.34 E-value=0.0012 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=9.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHh
Q psy12735 53 HSTMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 53 ~~v~lvGpsGsGKSTlik~L~~ 74 (233)
-.++|+|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998875
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.33 E-value=0.0018 Score=56.12 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHh
Q psy12735 54 STMIVGPTGGGKSVVINALVK 74 (233)
Q Consensus 54 ~v~lvGpsGsGKSTlik~L~~ 74 (233)
..+|+|+|||||||++.++.-
T Consensus 27 l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999873
No 496
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.33 E-value=0.00088 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
...++|+|++|+|||||++.+.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346999999999999999999875
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.33 E-value=0.0012 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.0
Q ss_pred hhcceEEEEcCCCCChHHHHHHHHhhh
Q psy12735 50 LTRHSTMIVGPTGGGKSVVINALVKTS 76 (233)
Q Consensus 50 ~~~~~v~lvGpsGsGKSTlik~L~~~~ 76 (233)
.++..++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 445679999999999999999998865
No 498
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.32 E-value=0.0092 Score=47.08 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCe-ehHHHHHHHHHHHHHHhhcceEEEEcCCCCChHHHHHH
Q psy12735 20 TAALETVLKQDNYE-MVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINA 71 (233)
Q Consensus 20 ~~~~~~~~~~~~l~-~~~~~~~k~~ql~~~l~~~~~v~lvGpsGsGKSTlik~ 71 (233)
...+.+.+++.++. +.+.+. +....+..++.+++.+|+|+|||..+-+
T Consensus 22 ~~~l~~~l~~~g~~~~~~~Q~----~~i~~~~~~~~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 22 KPELLRAIVDCGFEHPSEVQH----ECIPQAILGMDVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp CHHHHHHHHHTTCCCCCHHHH----HHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHH----HHHHHHhCCCCEEEECCCCCchhhhhhH
Confidence 45566777889998 888776 3334455678899999999999976543
No 499
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.32 E-value=0.0022 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKT 75 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~ 75 (233)
.-.++++|++|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999988764
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.31 E-value=0.002 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHhhhh
Q psy12735 52 RHSTMIVGPTGGGKSVVINALVKTST 77 (233)
Q Consensus 52 ~~~v~lvGpsGsGKSTlik~L~~~~~ 77 (233)
+..++|.|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999998653
Done!