RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12735
(233 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 338 bits (869), Expect = e-107
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 12/244 (4%)
Query: 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGP 60
+ +F + L+ ++ + M + K +Q Y T+ + ++VG
Sbjct: 873 ELSKIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGK 931
Query: 61 TGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFR 119
G GK+ ++ + G+ Y ++ K ++ LYG + T +W DGL ++I R
Sbjct: 932 AGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILR 991
Query: 120 AVNKPLDPGSK-ERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFE 178
VN + K R +++FD D+D ++E MNSV+DDNKILTL NGER+ + + ++LFE
Sbjct: 992 RVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFE 1051
Query: 179 VGDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVN---------LNVKADEELRELLNG 229
+L + +PAT++R G+++ +N L++ ++L++L++
Sbjct: 1052 TDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISD 1111
Query: 230 IFDK 233
FD
Sbjct: 1112 SFDM 1115
Score = 30.2 bits (68), Expect = 0.79
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 34 MVPVQVDKVVQMY--ETMLT-RHSTMIVGPTGGGKSVVINALVK 74
++P +D + +L + ++ GP G GK++++N ++
Sbjct: 1247 VIPT-IDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 273 bits (700), Expect = 7e-85
Identities = 74/226 (32%), Positives = 132/226 (58%), Gaps = 1/226 (0%)
Query: 1 LIKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGP 60
L+ D+FP + + + ++ + KQ + V+K++Q+++ + H M+VGP
Sbjct: 855 LLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGP 914
Query: 61 TGGGKSVVINALVKTSTVL-GYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFR 119
+GGGK+ ++ + + + ++PKA++ +L+G L+ TR+W DGL + R
Sbjct: 915 SGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLR 974
Query: 120 AVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEV 179
+ + S +R +I+FDGDVD W+EN+NS++DDNK+LTL NGER+ L + +++FEV
Sbjct: 975 RIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEV 1034
Query: 180 GDLQYASPATVSRAGMVYVDPINLGYQPYWTRWVNLNVKADEELRE 225
DL+YA+ AT+SR GMV+ L Q + +++ + +E
Sbjct: 1035 QDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQE 1080
Score = 32.2 bits (73), Expect = 0.15
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 34 MVPVQVDKVVQMY--ETMLT-RHSTMIVGPTGGGKSVVINALVK 74
++P VD + L+ ++ GP G GK++ + + ++
Sbjct: 1284 VIPT-VDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLR 1326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 6e-10
Identities = 46/293 (15%), Positives = 78/293 (26%), Gaps = 96/293 (32%)
Query: 4 DLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIV-GPTG 62
+F K + SR + L L + L +++ G G
Sbjct: 124 QVFAKYNVSR---LQPYLKLRQALLE--------------------LRPAKNVLIDGVLG 160
Query: 63 GGKSVVINALVKTSTVL-GYPARTYTLN----PKAVSVIE----LYGVLNP--------- 104
GK+ V + + V + + LN +V+E L ++P
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 105 --------ETRDWYDGLLSN--------IFRAVN-----KPLDPGSKERKYILF---DGD 140
+ LL + + V + K IL
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----ILLTTRFKQ 276
Query: 141 V-DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDL----QYASPATVSRAGM 195
V D L + D+ +TL E LL L DL +P +S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 196 VYVDPINLGYQPYWTRWVNLNVKA-------------DEELRELLN--GIFDK 233
D + W W ++N E R++ + +F
Sbjct: 336 SIRDGLAT-----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Score = 37.5 bits (86), Expect = 0.003
Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 65/223 (29%)
Query: 2 IKDLFPKTDCSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYE----TML-TRHSTM 56
++ L Y L VL N VQ K + +L TR +
Sbjct: 234 LRRLLKSKP-----YEN---CL-LVL--LN-----VQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 57 I-VGPTGGGKSVVINALVKTST----------VLGY-----PARTYTLNPKAVSVIELYG 100
+ ++ T T L P T NP+ +S+I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---A 334
Query: 101 VL---NPETRDWYDGL----LSNIFRAVNKPLDPGSKERKYI---LFDGDVD-------A 143
T D + + L+ I + L+P + + +F
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 144 LWIENMNSVMDDNKILTLANGERIRLLAHCQ---LLFEVGDLQ 183
+W + + + ++ + N L Q + +
Sbjct: 395 IWFD-----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 57/196 (29%)
Query: 52 RHSTMIVGPTGGGKSVVINALV---KTSTVLGYPARTYTLNPKAVSVIELYG-------- 100
H ++ PT + A + + +L P + + + + EL G
Sbjct: 17 EHVLLV--PT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 101 VLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILT 160
++ P +D +L+ E Y L D+ AL ++ +N
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEF---------ENCY-LEGNDIHAL----AAKLLQENDTTL 116
Query: 161 LANGERIR--LLAHCQLLFEVGDLQYASP----ATVSRAGMVYVDPINLGYQ----PYWT 210
+ E I+ + A + D + S A +V + G Q Y+
Sbjct: 117 VKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAI----FGGQGNTDDYF- 170
Query: 211 RWVNLNVKADEELREL 226
EELR+L
Sbjct: 171 ----------EELRDL 176
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 33.3 bits (76), Expect = 0.054
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKT 75
V M RH ++ G TG GKSV++ L T
Sbjct: 45 VPMPRDAEPRH-LLVNGATGTGKSVLLRELAYT 76
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.15
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 56 MIVGPTGGGKSVVINALVKTS 76
M+VG +G GKS +IN+L T
Sbjct: 22 MVVGESGLGKSTLINSLFLTD 42
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.8 bits (72), Expect = 0.16
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 38 QVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTST 77
+ KV++ +VG T GKS IN +++ +T
Sbjct: 148 GMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT 187
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 0.18
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 56 MIVGPTGGGKSVVINALVKTS 76
M+VG +G GKS +IN+L T
Sbjct: 12 MVVGESGLGKSTLINSLFLTD 32
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.5 bits (71), Expect = 0.22
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYG 100
T + I+ G GKS L+ + G + + G
Sbjct: 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG 83
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.4 bits (72), Expect = 0.25
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 57 IVGPTGGGKSVVINAL 72
+VGPTG GK+ ++N L
Sbjct: 386 LVGPTGSGKTTIVNLL 401
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 31.4 bits (72), Expect = 0.25
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 57 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 89
VG +GGGKS +IN + V + +L G+ + +
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.0 bits (71), Expect = 0.29
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALV 73
+ L + + G +G GKS ++NA+
Sbjct: 164 KEYLKGKISTMAGLSGVGKSSLLNAIN 190
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 30.8 bits (70), Expect = 0.30
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 57 IVGPTGGGKSVVINAL 72
++G TG GKS +++A
Sbjct: 52 LLGRTGSGKSTLLSAF 67
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.6 bits (70), Expect = 0.37
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALV 73
L ++ GP+G GKS +++ L
Sbjct: 160 VDYLEGFICILAGPSGVGKSSILSRLT 186
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.6 bits (70), Expect = 0.37
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALV 73
+T+ G +G GKS ++NA+
Sbjct: 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS 194
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 29.7 bits (67), Expect = 0.40
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 LTRHSTMIVGPTGGGKSVVINAL 72
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 30.0 bits (68), Expect = 0.44
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 46 YETMLTRHSTMIVGPTGGGKSVVINALV---KTST 77
E L IV PTG GK+ V A + T T
Sbjct: 102 LERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPT 136
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 30.1 bits (69), Expect = 0.50
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 57 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 89
GP+GGGKS + + L + G P +L
Sbjct: 33 FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 30.2 bits (69), Expect = 0.53
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 57 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 89
+VG +G GKS + + + + +L G+ R YTL
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 413
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.8 bits (68), Expect = 0.56
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 49 MLTRHSTMIV--GPTGGGKSVVINALVK 74
M +IV GP+G GK V + +
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFE 28
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.9 bits (68), Expect = 0.57
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALV 73
E LT ++ G +G GKS ++NAL+
Sbjct: 210 EEALTGRISIFAGQSGVGKSSLLNALL 236
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 30.2 bits (69), Expect = 0.59
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 57 IVGPTGGGKSVVINAL-----VKTSTVL--GYPARTYTLN 89
+VG +G GKS + N V + ++ G+ R Y L
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 29.6 bits (67), Expect = 0.60
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 LTRHSTMIVGPTGGGKSVVINAL 72
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.9 bits (67), Expect = 0.66
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 39 VDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPART 85
+ ++ E +VG T GKS IN ++K + T
Sbjct: 147 IAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVIT 193
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 29.9 bits (66), Expect = 0.82
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 49 MLTRHSTMIVGPTGGGKS-VVINALVK-TSTVLGYPAR 84
+ R GPT GK+ I S V P +
Sbjct: 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLK 189
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 29.4 bits (66), Expect = 0.84
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 LTRHSTMIVGPTGGGKSVVINAL 72
+ I+G G GKS + A+
Sbjct: 23 FEKGIVAIIGENGSGKSSIFEAV 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 29.8 bits (67), Expect = 0.90
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALVKT 75
E L IV PTG GK+ V A +
Sbjct: 103 ERWLVDKRGCIVLPTGSGKTHVAMAAINE 131
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.7 bits (66), Expect = 0.90
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 17 PEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINAL 72
E +E ++ N ++ + ++ ++ + + + G TG GKS IN L
Sbjct: 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDS--SVLNVAVTGETGSGKSSFINTL 89
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 29.1 bits (66), Expect = 0.95
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 31 NYEMVPVQVDKVVQMYETMLTRHSTMIV--GPTGGGKSVVINALVK 74
++ M ++ Q +ML ++V P+G GK+ V N L++
Sbjct: 6 HHHMGTLEAQT--QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLE 49
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 29.3 bits (66), Expect = 1.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 56 MIVGPTGGGKSVVINALV 73
++ G TG GKSV +NA++
Sbjct: 218 LVAGTTGSGKSVGVNAML 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 29.2 bits (66), Expect = 1.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 56 MIVGPTGGGKSVVINALV 73
++ G TG G SV +NA++
Sbjct: 171 LVAGTTGSGASVGVNAMI 188
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 57 IVGPTGGGKSVVINAL 72
+VGP+G GKS ++ L
Sbjct: 85 LVGPSGAGKSTILRLL 100
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T IVGP G GKS +I+A+
Sbjct: 27 TAIVGPNGSGKSNIIDAI 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics,
transferase; HET: ATP; 2.00A {Haemophilus influenzae}
SCOP: c.37.1.1
Length = 206
Score = 28.6 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 55 TMIVGPTGG---GKSVVINALVKTSTVLGYP 82
T IVG TGG GK+ + N LG P
Sbjct: 2 TYIVGLTGGIGSGKTTIANLFTD----LGVP 28
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 56 MIVGPTGGGKSVVINALVKT 75
M+VG +G GKS +IN+L T
Sbjct: 35 MVVGESGLGKSTLINSLFLT 54
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T IVG G GKS + +A+
Sbjct: 29 TAIVGANGSGKSNIGDAI 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily
2 RNA helicase, ATP and dsRNA binding antiviral
signalling pathway; 3.00A {Anas platyrhynchos} PDB:
4a36_A*
Length = 556
Score = 29.1 bits (64), Expect = 1.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVV 68
+++ + + + +I PTG GK+ V
Sbjct: 13 IELAQPAINGKNALICAPTGSGKTFV 38
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 28.8 bits (64), Expect = 1.7
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 32 YEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVI 69
++ Q ++ E + + PTG GK++
Sbjct: 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFS 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 28.3 bits (64), Expect = 1.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 57 IVGPTGGGKSVVINAL 72
+VG TG GKS + L
Sbjct: 51 LVGHTGSGKSTIAKLL 66
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 28.3 bits (62), Expect = 1.8
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALV 73
L T + G G GKS + A V
Sbjct: 25 LDELVTTLSGGNGAGKSTTMAAFV 48
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 27.9 bits (63), Expect = 2.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 47 ETMLTRHSTMIVGPTGG---GKSVVINALVKTSTVLGYP 82
+ + H M++G TG GKS V L G
Sbjct: 4 DKIHHHHHHMVIGVTGKIGTGKSTVCEIL---KNKYGAH 39
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 28.2 bits (64), Expect = 2.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 57 IVGPTGGGKSVVIN 70
IVG +G GKS +
Sbjct: 40 IVGRSGSGKSTLTK 53
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 27.9 bits (62), Expect = 2.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVV 68
+++ + L + +I PTG GK+ V
Sbjct: 39 MEVAQPALEGKNIIICLPTGSGKTRV 64
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 2.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 40 DKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTS 76
++V + + M+VG +G GKS +IN+L T
Sbjct: 25 NQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTD 61
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 28.0 bits (61), Expect = 2.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVV 68
+++ + +T+I PTG GK+ V
Sbjct: 19 LELALPAMKGKNTIICAPTGCGKTFV 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 28.2 bits (64), Expect = 2.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 47 ETMLTRHSTMIVGPTGGGKSV 67
+T+L+ ++V PTGGGKS+
Sbjct: 35 DTVLSGRDCLVVMPTGGGKSL 55
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.0 bits (62), Expect = 2.9
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 56 MIVGPTGGGKSVVINAL 72
+++G G GKS +N++
Sbjct: 43 LVMGKGGVGKSSTVNSI 59
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 28.0 bits (61), Expect = 3.0
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 56 MIVGPTGGGKSVVINALV 73
+++G GKS +NAL+
Sbjct: 73 LVLGDMKRGKSTFLNALI 90
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase;
HET: ANP; 2.14A {Mus musculus}
Length = 555
Score = 27.9 bits (61), Expect = 3.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVV 68
+++ +T+I PTG GK+ V
Sbjct: 10 LELALPAKKGKNTIICAPTGCGKTFV 35
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 28.1 bits (63), Expect = 3.1
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 22/64 (34%)
Query: 102 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN--SVMDDNKIL 159
LNPE R W+ L D ++ W +MN ++ ++ L
Sbjct: 284 LNPEARKWFGDKYRF-------------------LIDQGIEGFWN-DMNEPAIFYSSEGL 323
Query: 160 TLAN 163
A
Sbjct: 324 AEAK 327
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 28.0 bits (62), Expect = 3.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLN 103
+L R ++I GP G GK+V +V + + + R P V+V L L
Sbjct: 370 SHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLR 425
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 27.7 bits (62), Expect = 3.2
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 55 TMIVGPTGGGKSVVINAL 72
+ G TG GK+ ++ +
Sbjct: 67 LAVAGSTGAGKTSLLMMI 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.5 bits (62), Expect = 3.4
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 52 RHSTMIV--GPTGGGKSVVINALVK 74
++V GP+ GKS V+ L +
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCLRE 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 55 TMIVGPTGGGKSVVINAL 72
+VG G GKS +++AL
Sbjct: 34 VAVVGQVGCGKSSLLSAL 51
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.8 bits (62), Expect = 3.5
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIE 97
+ + ++ G G GKS A+ + LG KA +
Sbjct: 199 DQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLG 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.5 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 40 DKVVQMYETMLTRHSTMIV--GPTGGGKSVVINALVK 74
DK+ + M T+ + P+G GKS +I AL+K
Sbjct: 4 DKIHHHHHHM--AQGTLYIVSAPSGAGKSSLIQALLK 38
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella
zeae}
Length = 319
Score = 27.6 bits (61), Expect = 3.8
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 19/90 (21%)
Query: 40 DKVVQMYETMLTRHSTMIVGPTG---GGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI 96
+ + V G GG + + G P YT
Sbjct: 120 AAATAAVAKARKANPSFKVVSVGHSLGGAVATLAGA--NLRIGGTPLDIYT--------- 168
Query: 97 ELYG---VLNPETRDWYDGLLSNIFRAVNK 123
YG V N + + FR N
Sbjct: 169 --YGSPRVGNTQLAAFVSNQAGGEFRVTNA 196
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.1 bits (61), Expect = 3.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 55 TMIVGPTGGGKSVVINAL 72
+ G TG GK+ ++ +
Sbjct: 37 LAVAGSTGAGKTSLLMMI 54
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 27.6 bits (61), Expect = 4.0
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 19 FTAALETVLKQDNYEMVPVQVDKVVQMYETM-LTRHSTMIVGPT 61
F ++ VL + E ++ + ++ + + + S G T
Sbjct: 302 FGPEVKRVLAVLHTERENMRAGRGSELMDLLISKKWSDRFGGFT 345
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 27.5 bits (60), Expect = 4.0
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 13/125 (10%)
Query: 54 STMIVGPTGGGKSVVINALV-------KTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 106
++G G GK+V + L V + + P
Sbjct: 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRR 105
Query: 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGER 166
D L+ + + + ++ L D L + +++ + + R
Sbjct: 106 GLSRDEFLALLVEHLRE------RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159
Query: 167 IRLLA 171
I L+
Sbjct: 160 IALVI 164
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 27.5 bits (60), Expect = 4.2
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 54 STMIVGPTGGGKSV----VINALVKTSTVLGYPARTYTLNPKAVS--------VIELYGV 101
+ ++ G TG GK+ V+ L ++ LG + +N + + E GV
Sbjct: 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGV 105
Query: 102 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNS 151
P T + + + +++ YI+ ++D L
Sbjct: 106 RVPFTGLSVGEVYERLVKRLSR------LRGIYIIVLDEIDFLPKRPGGQ 149
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.1 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 50 LTRHSTMIV--GPTGGGKSVVINALVK 74
+T +IV GP+G GK V A+ K
Sbjct: 4 MTERGLLIVLSGPSGVGKGTVREAVFK 30
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 27.6 bits (61), Expect = 4.9
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 19/134 (14%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 106
+T+L R ++I GP G GK+V +V P ++V
Sbjct: 366 KTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQGNGPVLVCAPSNIAV----------- 413
Query: 107 RDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDAL--WIENMNSVMDDNKILTLANG 164
D L I + K + +K R+ I AL I NM+S+ + K+ L +
Sbjct: 414 ----DQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD- 468
Query: 165 ERIRLLAHCQLLFE 178
E L + + +
Sbjct: 469 ETGELSSADEKRYR 482
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 27.1 bits (61), Expect = 5.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 57 IVGPTGGGKSVVINAL 72
+VGP G GKS V L
Sbjct: 50 LVGPNGSGKSTVAALL 65
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.1 bits (60), Expect = 5.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T++ GP G GKS + A+
Sbjct: 26 TVVEGPNGAGKSSLFEAI 43
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 26.9 bits (59), Expect = 5.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 54 STMIVGPTGGGKSVVINALVK 74
+ I G TG GK+ V+ ++
Sbjct: 47 NIFIYGLTGTGKTAVVKFVLS 67
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 27.3 bits (59), Expect = 5.5
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 28/202 (13%)
Query: 22 ALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGY 81
AL +L + V + G GKS +++ +++
Sbjct: 52 ALNRILLSEAVRDKEVVA---------------VSVAGAFRKGKSFLMDFMLRYMYNQES 96
Query: 82 PARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDV 141
N ++ G ET I+ + P K+ +L D
Sbjct: 97 VDWVGDYNEP-LTGFSWRGGSERETTGIQ------IWSEIFLINKPDGKKVAVLLMDTQG 149
Query: 142 DALWIENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201
+ D + L+ + + + DLQ+ + G + ++
Sbjct: 150 TFDSQSTLR---DSATVFALSTMISSIQVYNLSQNVQEDDLQHLQ--LFTEYGRLAMEET 204
Query: 202 NLGYQPYWTRWVNLNVKADEEL 223
L ++ + E
Sbjct: 205 FLKPFQSLI-FLVRDWSFPYEF 225
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 27.2 bits (61), Expect = 5.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 57 IVGPTGGGKSVVIN 70
+VGP+G GKS V++
Sbjct: 375 LVGPSGSGKSTVLS 388
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 27.4 bits (60), Expect = 5.6
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 20/49 (40%)
Query: 102 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150
P+ +W+ LF +D +W +M
Sbjct: 516 GRPDVAEWWGNNYKK-------------------LFSIGLDFVWQ-DMT 544
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 27.3 bits (61), Expect = 5.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 57 IVGPTGGGKSVVIN 70
+VG +G GKS V+
Sbjct: 1064 LVGSSGCGKSTVVQ 1077
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 27.0 bits (60), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 55 TMIVGPTGGGKSVVINALVKTSTVLGY 81
T I+GP G GKS +++A+ S VLG
Sbjct: 29 TSIIGPNGSGKSNMMDAI---SFVLGV 52
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 27.4 bits (61), Expect = 5.7
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 20/49 (40%)
Query: 102 LNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMN 150
+TR+W+ GL+S VD +W++ MN
Sbjct: 294 FREDTREWWAGLISE-------------------WLSQGVDGIWLD-MN 322
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 26.9 bits (60), Expect = 5.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 57 IVGPTGGGKSVVINAL 72
+VG G GKS + L
Sbjct: 108 LVGTNGIGKSTALKIL 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 26.7 bits (59), Expect = 6.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 56 MIVGPTGGGKSVVINAL 72
+++G G GKS +N+L
Sbjct: 40 LVLGKGGVGKSSTVNSL 56
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 27.0 bits (60), Expect = 6.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 52 RHSTMIVGPTGGGKSVVINAL 72
+ S ++VG T GK+ +NA+
Sbjct: 260 KFSAIVVGETASGKTTTLNAI 280
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 26.8 bits (59), Expect = 6.7
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 40 DKVVQMYETMLTRHSTMIVGPTG---GGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI 96
+++V ++ + V TG GG + ++ AL R L+ + +
Sbjct: 120 NELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALD-------LYQREEGLSSSNLFLY 172
Query: 97 ELYG---VLNPETRDWYDGLLSNIFRAVNK 123
G V NP ++ R VN+
Sbjct: 173 -TQGQPRVGNPAFANYVVSTGIPYRRTVNE 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 56 MIVGPTGGGKSVVINALVKTS 76
+ VG TG GKS +++ L T
Sbjct: 46 LCVGETGLGKSTLMDTLFNTK 66
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 26.6 bits (59), Expect = 7.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 36 PVQVDKVVQMYETMLTRHSTMIVG-PTGGGKSVV 68
P Q + + L + +++ PTG GK+++
Sbjct: 33 PPQT----EAVKKGLLEGNRLLLTSPTGSGKTLI 62
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 26.8 bits (58), Expect = 7.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALV 73
T + G G GKS + V
Sbjct: 27 FDELVTTLSGGNGAGKSTTMAGFV 50
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 26.6 bits (58), Expect = 7.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 54 STMIVGPTGGGKSVVINALVK 74
S + +G TG GK+ V +
Sbjct: 47 SNLFLGLTGTGKTFVSKYIFN 67
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.5 bits (58), Expect = 8.0
Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 21 AALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIV-GPTGGGKSVVINALVKT 75
+ ++ Q + + + + + + + GP G G + + +++
Sbjct: 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEA 68
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 26.4 bits (59), Expect = 8.5
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 17 PEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRH---STMIVGPTGGGKSVVINALV 73
+ T K+ ++ + ++ L+ +IVG GKS +IN L
Sbjct: 61 EKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLK 120
Query: 74 K 74
Sbjct: 121 G 121
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural
genomics, JOI for structural genomics, JCSG; HET: SO4;
2.06A {Listeria innocua}
Length = 159
Score = 25.7 bits (57), Expect = 8.7
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 114 LSNIFRAVNKPLDP--GSKERKYILFDGDVDALWIE---NMNSVMDDNKILTLANGERIR 168
+I R + P+ ++ + + LW + V+D + L
Sbjct: 95 AGDIIRTLEGPIVLVESMEDEEAAQRE-----LWTRMRNAVRDVLDQTTLSDLLKHSTDS 149
Query: 169 LLAH 172
L
Sbjct: 150 ELTD 153
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.7 bits (58), Expect = 8.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 56 MIVGPTGGGKSVVINALVKTS 76
++ G GK+ I L++
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQE 89
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 26.3 bits (58), Expect = 8.8
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 37 VQVDKVVQMYETMLTRHS-TMIVGPTGGGKS 66
++ + ML + T++ G GK+
Sbjct: 5 TGGQQMGRGSPNMLRKRQMTVLDLHPGSGKT 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 26.5 bits (59), Expect = 9.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 47 ETMLTRHSTMIVGPTGGGKS 66
+ +V PTGGGKS
Sbjct: 54 NVTMAGKEVFLVMPTGGGKS 73
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 25.9 bits (58), Expect = 9.0
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 55 TMIV--GPTGGGKSVVINALVK 74
+V GP+G GKS ++ L +
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQ 26
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism,
homocysteinemia, zinc, thiol alkyl transfer; HET: CBH
CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A*
1umy_A
Length = 406
Score = 26.3 bits (58), Expect = 10.0
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 122 NKPLDPGS--------KERKYILFDGDVDALWIENMNSV 152
L S ++ + +VD L E V
Sbjct: 126 PSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHV 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,665,321
Number of extensions: 216919
Number of successful extensions: 750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 112
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)