RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12735
(233 letters)
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 38.0 bits (87), Expect = 7e-04
Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 17/176 (9%)
Query: 43 VQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLG----------------YPARTY 86
V M RH ++ G TG GKSV++ L T + G +
Sbjct: 42 VPMPRDAEPRH-LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDI 100
Query: 87 TLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWI 146
LNP + ++ +L L +
Sbjct: 101 ILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLAL 160
Query: 147 ENMNSVMDDNKILTLANGERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPIN 202
S+ + T+A + +R L + + ++ A V D +
Sbjct: 161 IGTPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLP 216
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 35.3 bits (80), Expect = 0.004
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 3/114 (2%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDW 109
++ T IVG G GKS + +A+ VLG + + +I P +
Sbjct: 24 FSKGFTAIVGANGSGKSNIGDAI---LFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80
Query: 110 YDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLAN 163
+ N + R+ + DG + + ILT A
Sbjct: 81 EVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAM 134
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 35.5 bits (80), Expect = 0.004
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 55 TMIVGPTGGGKSVVINALVKTSTVLGYPART 85
T I+GP G GKS +++A+ S VLG +
Sbjct: 28 TSIIGPNGSGKSNMMDAI---SFVLGVRSNH 55
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 32.7 bits (73), Expect = 0.029
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPA 83
+ T IVGP G GKS +I+A+ V G +
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAI---KWVFGEQS 52
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 32.3 bits (72), Expect = 0.033
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI 96
L T + G G GKS + A T L +
Sbjct: 22 LDELVTTLSGGNGAGKSTTMAAF---VTALIPDLTLLHFRNTTEAGA 65
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.7 bits (68), Expect = 0.083
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKA 92
+ GP+ GKS V+ L + L + T P+
Sbjct: 7 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 42
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.1 bits (66), Expect = 0.20
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 LTRHSTMIVGPTGGGKSVVINAL 72
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 30.2 bits (67), Expect = 0.20
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAV 93
+ G G GKS + A G ++P +
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 29.7 bits (65), Expect = 0.23
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 26 VLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVV 68
VL++D + Q +Y + +IV PTG GK+++
Sbjct: 2 VLRRDLIQPRIYQE----VIYAKCK-ETNCLIVLPTGLGKTLI 39
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 29.8 bits (65), Expect = 0.25
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 LTRHSTMIVGPTGGGKSVVINAL 72
+I+G G GKS +++A+
Sbjct: 21 FKEGINLIIGQNGSGKSSLLDAI 43
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.7 bits (66), Expect = 0.31
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 17 PEFTAALETVLKQDNYEMVPVQVDKVVQMYETML-TRHSTMIVGPTGGGKSVVINALVKT 75
E +E ++ N ++ + + + + + + G TG GKS IN L
Sbjct: 23 QEILNLIELRMRAGNIQLT---NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 79
Query: 76 S 76
Sbjct: 80 G 80
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.4 bits (65), Expect = 0.31
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGY----PARTYTLNPKAVSVIELYGVLNPETRDWY 110
+ P+G GKS +I AL+KT + T P V + V + E ++
Sbjct: 7 VSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 29.3 bits (65), Expect = 0.34
Identities = 14/146 (9%), Positives = 35/146 (23%), Gaps = 16/146 (10%)
Query: 5 LFPKTD-CSRVSYPEFTAALETVLKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGG 63
+ K D + E + ++ + L + + G +G
Sbjct: 47 VINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGV 106
Query: 64 GKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSNIFRAVNK 123
GKS ++NA+ + + + + D
Sbjct: 107 GKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG-YVVDT----------- 154
Query: 124 PLDPGSKERKYILFDGDVDALWIENM 149
PG + + + + +
Sbjct: 155 ---PGFANLEINDIEPEELKHYFKEF 177
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.1 bits (65), Expect = 0.38
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 57 IVGPTGGGKSVVINAL----------VKTSTVLGYPARTYTLNPKAVSVIELYGVLNPET 106
I G TG GK+ ++ + +K S + + ++ + P + ++GV E
Sbjct: 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126
Query: 107 RDW 109
R
Sbjct: 127 RYK 129
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.8 bits (63), Expect = 0.39
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGL 113
+VG GKS ++ A+ + + YP T + N V V E + +G
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.45
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 57 IVGPTGGGKSVVINALVK 74
++G G G+ + N L+
Sbjct: 8 LLGAHGVGRRHIKNTLIT 25
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.7 bits (64), Expect = 0.47
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 55 TMIVGPTGGGKSVVINAL 72
IVG +G GKS + +
Sbjct: 32 IGIVGRSGSGKSTLTKLI 49
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 28.7 bits (64), Expect = 0.47
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 55 TMIVGPTGGGKSVVINAL 72
GP+GGGKS + + L
Sbjct: 31 IAFAGPSGGGKSTIFSLL 48
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.7 bits (64), Expect = 0.54
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 55 TMIVGPTGGGKSVVINAL 72
T +VGP G GKS V L
Sbjct: 43 TALVGPNGSGKSTVAALL 60
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 28.7 bits (64), Expect = 0.57
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 55 TMIVGPTGGGKSVVINAL 72
+VG +G GKS + + +
Sbjct: 44 VALVGRSGSGKSTIASLI 61
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.4 bits (62), Expect = 0.58
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 57 IVGPTGGGKSVVINALVKT-STVLGYPARTYTLNPKA 92
+ GP+G GKS ++ L + S++ G+ T NP+
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRP 41
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.6 bits (64), Expect = 0.60
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 55 TMIVGPTGGGKSVVINAL 72
VG +GGGKS +IN +
Sbjct: 47 VAFVGMSGGGKSTLINLI 64
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.4 bits (62), Expect = 0.60
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDG 112
+VG GKS +++ + + Y T N V + + + +G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 28.2 bits (62), Expect = 0.66
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 56 MIVGPTGGGKSVVINALVK 74
+++G G GKS +N+++
Sbjct: 36 LVMGKGGVGKSSTVNSIIG 54
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 0.86
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 47 ETMLTRHSTMIVGPTGGGKSVVI 69
+ + T++ G GK+
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRY 26
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.8 bits (60), Expect = 0.92
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 3/122 (2%)
Query: 38 QVDKVVQMYETMLTRHSTM--IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSV 95
++D + + + T + I G + GK+ + N L +T G + ++ V
Sbjct: 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65
Query: 96 IELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDD 155
+ Y E Y L ++ ++ + L D + + D
Sbjct: 66 AKRY-HTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSD 124
Query: 156 NK 157
+
Sbjct: 125 SD 126
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.1 bits (59), Expect = 1.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 51 TRHSTMIVGPTGGGKSVVI 69
+ + PTG GKS +
Sbjct: 7 SFQVAHLHAPTGSGKSTKV 25
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.2 bits (59), Expect = 1.2
Identities = 10/126 (7%), Positives = 28/126 (22%), Gaps = 5/126 (3%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYP---ARTYTLNPKAVSVIELYGVLNPETRDWYDG 112
++ G G G + + G ++ + E V + + D
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV--AKEENLVSDRDQMRKMDP 62
Query: 113 LLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAH 172
+ + + + D + + + L I +
Sbjct: 63 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETT 122
Query: 173 CQLLFE 178
+
Sbjct: 123 GDEILM 128
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.4 bits (59), Expect = 1.3
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLG-YPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLS 115
IVG GKS ++N L+ + A+T + Y + +T +
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69
Query: 116 NIFRAVNKPLDPGSKERKYILFDGDVD 142
I R +NK + + ++F +
Sbjct: 70 AINRLMNKAASSSIGDVELVIFVVEGT 96
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.0 bits (58), Expect = 1.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 MLTRH-STMIVGPTGGGKSVVI 69
ML + +T++ G GK+
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRF 24
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.9 bits (58), Expect = 1.6
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 4/105 (3%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTY----TLNPKAVSVIELYGVLNPETRDWYD 111
++ G G GKS V+ + + G + + A+ +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 112 GLLSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDN 156
I A + + Y+ D +
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSY 109
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.0 bits (58), Expect = 1.6
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLG-YPART 85
+ G + GKS +I L G P T
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 34
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.2 bits (59), Expect = 1.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 57 IVGPTGGGKSVVINALVK 74
I GP+G GKS ++ L
Sbjct: 6 ISGPSGTGKSTLLKKLFA 23
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.0 bits (58), Expect = 1.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 57 IVGPTGGGKSVVINALVK 74
I+G GKSV++N L
Sbjct: 12 ILGGESSGKSVLVNKLAA 29
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.0 bits (58), Expect = 1.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 57 IVGPTGGGKSVVINALVKTSTVL 79
IVG GKS + N LVK +
Sbjct: 5 IVGRPNVGKSTLFNKLVKKKKAI 27
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.0 bits (58), Expect = 2.1
Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 13/163 (7%)
Query: 52 RHSTMIVGPTGGGKSVVI----NALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETR 107
+G G GK+ + + + + G + +N + L
Sbjct: 46 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 105
Query: 108 DWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD--VDALWIENMNSVMDDNKILTLAN-- 163
+ + + K L + L ++ + D +L +
Sbjct: 106 GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 165
Query: 164 -----GERIRLLAHCQLLFEVGDLQYASPATVSRAGMVYVDPI 201
RI L + + ++ P S+ G P
Sbjct: 166 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPA 208
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.6 bits (57), Expect = 2.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 57 IVGPTGGGKSVVINALVKT 75
I G GKS ++NAL
Sbjct: 6 IAGRPNAGKSSLLNALAGR 24
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.9 bits (59), Expect = 2.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 57 IVGPTGGGKSVVINAL 72
++GPTG GKSV + +
Sbjct: 29 LLGPTGAGKSVFLELI 44
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 26.8 bits (58), Expect = 2.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 55 TMIVGPTGG---GKSVVINALVKTSTVLGYP 82
T IVG TGG GK+ + N LG P
Sbjct: 2 TYIVGLTGGIGSGKTTIANLFTD----LGVP 28
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 2.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 57 IVGPTGGGKSVVINAL 72
I+GPTG GK++ + +
Sbjct: 31 ILGPTGAGKTLFLELI 46
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 2.4
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
I+GP+G GK+ + +
Sbjct: 36 ILGPSGAGKTTFMRII 51
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 2.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 57 IVGPTGGGKSVVINALVKTSTV 78
IVG GKS ++N L
Sbjct: 37 IVGLYRTGKSYLMNKLAGKKKG 58
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 26.2 bits (56), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 57 IVGPTGGGKSVVINALVKT 75
IVG GKS ++N L+
Sbjct: 10 IVGKPNVGKSTLLNNLLGV 28
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.7 bits (59), Expect = 2.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 57 IVGPTGGGKSVVINAL 72
I+G +G GKS + +
Sbjct: 33 IIGSSGSGKSTFLRCI 48
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.4 bits (58), Expect = 2.5
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
++GP+G GK+ + +
Sbjct: 34 LLGPSGCGKTTTLRMI 49
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.4 bits (58), Expect = 2.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
+VGP G GKS ++ +
Sbjct: 30 LVGPNGAGKSTLLARM 45
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 26.3 bits (58), Expect = 2.7
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
++GP+G GK+ + +
Sbjct: 37 LLGPSGCGKTTTLRMI 52
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.1 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 51 TRHSTMIV---GPTGGGKSVVINALVK 74
T H I G +G GKS V + +
Sbjct: 2 TNHDHHIYVLMGVSGSGKSAVASEVAH 28
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 3.1
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWY 110
VG GK+++ L+ + T + V G
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDTQT--SITDSSAIYKVNNNRGNSLTLIDLPG 56
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 26.1 bits (56), Expect = 3.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 56 MIVGPTGG---GKSVVINALVKTSTVLGYP 82
+I+G TG GKS V L GYP
Sbjct: 4 IIIGITGNIGSGKSTVAALLRS----WGYP 29
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 3.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
VGP+G GKS ++ +
Sbjct: 31 FVGPSGCGKSTLLRMI 46
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.1 bits (56), Expect = 3.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 57 IVGPTGGGKSVVINALVKT 75
IVG GKS ++N L+
Sbjct: 5 IVGKPNVGKSTLLNRLLNE 23
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 26.2 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 57 IVGPTGGGKSVVINALVKTSTVL 79
IVG GKS + NA++ L
Sbjct: 13 IVGRPNVGKSTLFNAILNKERAL 35
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 25.2 bits (55), Expect = 3.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 211 RWVNLNVKADEELRELLNGI 230
R + L ++ DEEL +LL +
Sbjct: 69 RHLQLAIRNDEELNKLLGKV 88
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.7 bits (55), Expect = 4.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 57 IVGPTGGGKSVVINALV 73
I G G GK+ ++ +V
Sbjct: 5 ITGEPGVGKTTLVKKIV 21
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 25.7 bits (55), Expect = 4.3
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 57 IVGPTGGGKSVVINALVK 74
+G GK+ ++ L+
Sbjct: 7 FAAWSGTGKTTLLKKLIP 24
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 25.6 bits (56), Expect = 4.5
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 137 FDGDVDALWIENMNS-----VMDDNKILTLANGERIRLLA 171
FD ++ + N V +TL NG +I +LA
Sbjct: 112 FDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLA 151
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 25.7 bits (55), Expect = 4.5
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87
++VG GK+ + L + +G P R +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPTREFN 37
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.7 bits (56), Expect = 4.6
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 57 IVGPTGGGKSVVINAL 72
GP G GK+ ++ +
Sbjct: 32 FHGPNGIGKTTLLKTI 47
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.1 bits (56), Expect = 4.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 52 RHSTMIVGPTGGGKSVVINAL 72
++ G G GKS + AL
Sbjct: 28 IGGVLVFGDRGTGKSTAVRAL 48
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.4 bits (54), Expect = 4.9
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 57 IVGPTGGGKSVVINALVK 74
I GP G GKS L
Sbjct: 7 ITGPAGVGKSTTCKRLAA 24
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.5 bits (55), Expect = 5.1
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 31 NYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYT 87
+ + + + +T+ G +G GKS ++NA+ + +
Sbjct: 76 DVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL 132
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 25.6 bits (56), Expect = 5.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 51 TRHSTMIVGPTGGGKSVVINALVKTS 76
+I G +G GK VV + K S
Sbjct: 22 AECPVLITGESGVGKEVVARLIHKLS 47
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 25.6 bits (55), Expect = 5.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYT 87
I G G GKS I+AL T G+
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 86
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 25.3 bits (54), Expect = 5.6
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPA 83
+ G G GKS + AL G P
Sbjct: 9 LSGHPGSGKSTIAEALANL---PGVPK 32
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.4 bits (54), Expect = 6.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 57 IVGPTGGGKSVVINALVK 74
+ G + GKS ++ L
Sbjct: 8 LNGGSSAGKSGIVRCLQS 25
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.4 bits (54), Expect = 6.3
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVI--ELYGVLNPETRDWYDGL 113
+ GP G GK+ +I+ + + V E L
Sbjct: 5 FLTGPPGVGKTTLIHKA----------SEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54
Query: 114 LSNIFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLL 170
L+P +R+ + VD E + + N + G+R+ ++
Sbjct: 55 SGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVI 111
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 25.2 bits (54), Expect = 6.6
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 55 TMIVGPTGG---GKSVVINALVKTSTVLGYP 82
IV TGG GKS V NA LG
Sbjct: 3 RYIVALTGGIGSGKSTVANAFAD----LGIN 29
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.1 bits (53), Expect = 7.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 50 LTRHSTMIVGPTGGGKSVVINALVK 74
L T+++G GKS +I +
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGIN 51
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 25.3 bits (55), Expect = 7.4
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 32 YEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPK 91
+ VD V E + + ++V +G + ++ A+TY N
Sbjct: 208 QNLFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAE----AST--SNAQTYNQN-- 259
Query: 92 AVSVIELYGVLNPETRDWYDGLLSNIFRAVNKPLDPGSKERKYILFDGD 140
+I G P + + IF N+ G E+ + LF +
Sbjct: 260 ---LIRHVGGGTPRRPGK--EIEAYIFEMFNENQKAGGIEQNFGLFYPN 303
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.0 bits (53), Expect = 7.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYP 82
I GP GK+ ++ L S
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVV 33
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 25.0 bits (53), Expect = 7.4
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 57 IVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYDGLLSN 116
I GP GKS V + K G+ +A + + L L E + LL
Sbjct: 8 IDGPASSGKSTVAKIIAKD---FGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQ 64
Query: 117 IFRAVNKPLDPGSKERKYILFDGDVDALWIENMNSVMDDNKILTLANGERIRLLAHCQLL 176
+ + S+ ++F GDVD N V + + R +L++ Q +
Sbjct: 65 HPISFGR-----SETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI 119
Query: 177 FEVGDLQY 184
+ G +
Sbjct: 120 AQQGGIVM 127
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.3 bits (54), Expect = 7.4
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 55 TMIVGPTGGGKSVVINALVKTSTVLGYPA 83
+ VG G GK+ + + A
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVA 31
>d2jnga1 b.34.9.4 (A:5-80) Cullin-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 24.0 bits (52), Expect = 7.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 15 SYPEFTAALETVLKQDNYEMVPVQVD 40
Y E +A E +Q N + PVQV
Sbjct: 29 DYEEISAGDEGEFRQSNNGVPPVQVF 54
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 25.1 bits (53), Expect = 7.7
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 56 MIVGPTGGGKSVVINALVKTSTVLGYPARTYTLNPKAVSVIELYGVLNPETRDWYD 111
+I+G G GK+ ++ L V P + + ++
Sbjct: 9 LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 64
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.9 bits (54), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 IVGPTGGGKSVVINAL 72
I+GP G GKS +IN +
Sbjct: 35 IIGPNGSGKSTLINVI 50
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 24.9 bits (54), Expect = 8.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 57 IVGPTGGGKSVVINAL 72
++G G GK+ ++A+
Sbjct: 37 LIGANGAGKTTTLSAI 52
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 24.8 bits (54), Expect = 8.3
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 27 LKQDNYEMVPVQVDKVVQMYETMLTRHSTMIVGPTGGGKSVVINALVK 74
L+ E + + + + ++ + GP GKS + +
Sbjct: 29 LRYQQIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 75
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.2 bits (54), Expect = 8.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 57 IVGPTGGGKSVVINALV 73
+VG GKS V+ V
Sbjct: 31 VVGGQSAGKSSVLENFV 47
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.0 bits (54), Expect = 8.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 57 IVGPTGGGKSVVINAL 72
++GP G GK+ + +
Sbjct: 33 LIGPNGAGKTTTLRII 48
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 24.4 bits (52), Expect = 9.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 57 IVGPTGGGKSVVINALVK 74
+VG GK+ ++ V
Sbjct: 6 VVGYKHSGKTTLMEKWVA 23
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.8 bits (53), Expect = 9.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 57 IVGPTGGGKSVVINALV 73
+VG GKS V+ +V
Sbjct: 29 VVGSQSSGKSSVLENIV 45
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 24.7 bits (52), Expect = 9.6
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 57 IVGPTGGGKSVVINALVK 74
G + GKS +N L
Sbjct: 21 FAGRSNAGKSSALNTLTN 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 888,689
Number of extensions: 40155
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 87
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)