Query psy12736
Match_columns 567
No_of_seqs 278 out of 1746
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:22:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3595|consensus 100.0 1.7E-66 3.6E-71 621.4 35.7 442 55-546 27-565 (1395)
2 COG5245 DYN1 Dynein, heavy cha 100.0 2.6E-44 5.6E-49 399.3 25.3 440 80-552 1393-1941(3164)
3 PF12780 AAA_8: P-loop contain 100.0 6.9E-42 1.5E-46 343.3 9.2 145 414-562 1-146 (268)
4 PF12775 AAA_7: P-loop contain 100.0 8.4E-41 1.8E-45 337.6 10.2 173 161-335 1-272 (272)
5 COG5271 MDN1 AAA ATPase contai 99.0 5.8E-09 1.3E-13 120.5 17.6 198 246-486 1677-1889(4600)
6 TIGR02639 ClpA ATP-dependent C 98.8 2.3E-07 5E-12 107.0 22.1 100 430-534 460-583 (731)
7 PRK11034 clpA ATP-dependent Cl 98.8 2.5E-07 5.4E-12 105.9 20.4 106 427-533 461-586 (758)
8 COG5271 MDN1 AAA ATPase contai 98.8 1.2E-07 2.6E-12 110.1 16.5 116 423-545 864-994 (4600)
9 KOG0733|consensus 98.6 7.9E-07 1.7E-11 95.9 15.4 64 448-514 546-613 (802)
10 KOG0736|consensus 98.5 4.4E-06 9.5E-11 92.5 17.1 67 445-514 703-773 (953)
11 KOG0735|consensus 98.3 2.1E-05 4.5E-10 86.5 18.0 100 393-513 665-768 (952)
12 TIGR01243 CDC48 AAA family ATP 98.3 2.3E-05 4.9E-10 90.8 18.4 68 443-514 484-555 (733)
13 CHL00095 clpC Clp protease ATP 98.1 0.00018 4E-09 84.2 21.8 104 426-533 511-640 (821)
14 TIGR03345 VI_ClpV1 type VI sec 98.1 0.00024 5.1E-09 83.2 22.0 102 425-532 567-696 (852)
15 PF12774 AAA_6: Hydrolytic ATP 98.1 1.6E-05 3.5E-10 78.7 9.8 48 171-218 10-57 (231)
16 KOG0730|consensus 98.0 0.00029 6.2E-09 77.5 18.0 99 394-513 433-535 (693)
17 COG0542 clpA ATP-binding subun 97.9 0.0016 3.5E-08 74.1 22.7 100 426-532 493-621 (786)
18 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0032 6.8E-08 74.2 24.4 106 426-532 567-695 (852)
19 PF07728 AAA_5: AAA domain (dy 97.6 6.5E-05 1.4E-09 68.1 4.7 82 449-534 1-95 (139)
20 PF00004 AAA: ATPase family as 97.6 0.00022 4.9E-09 63.3 7.6 70 450-519 1-72 (132)
21 KOG0741|consensus 97.3 0.0019 4.2E-08 69.4 11.8 82 431-513 518-606 (744)
22 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0018 3.8E-08 65.6 9.8 94 436-532 11-133 (262)
23 PRK14956 DNA polymerase III su 97.2 0.0015 3.2E-08 71.0 9.6 119 439-559 30-177 (484)
24 cd00009 AAA The AAA+ (ATPases 97.1 0.0034 7.3E-08 55.9 9.8 81 446-526 18-109 (151)
25 PRK04195 replication factor C 97.1 0.0024 5.2E-08 70.4 10.4 110 446-559 38-157 (482)
26 KOG1969|consensus 97.1 0.0015 3.2E-08 72.7 8.4 80 450-529 329-412 (877)
27 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00066 1.4E-08 68.7 5.2 45 173-217 1-45 (262)
28 PRK14949 DNA polymerase III su 97.0 0.0034 7.4E-08 72.5 10.1 117 439-557 28-173 (944)
29 COG2256 MGS1 ATPase related to 96.9 0.0042 9.1E-08 65.1 9.7 81 439-525 39-128 (436)
30 PHA02544 44 clamp loader, smal 96.9 0.006 1.3E-07 63.2 10.8 110 448-559 43-157 (316)
31 PRK14960 DNA polymerase III su 96.9 0.005 1.1E-07 69.1 10.0 117 440-558 28-173 (702)
32 PLN00020 ribulose bisphosphate 96.8 0.005 1.1E-07 64.4 9.0 64 450-515 151-222 (413)
33 PRK10865 protein disaggregatio 96.8 0.0081 1.8E-07 70.7 11.4 112 421-534 174-309 (857)
34 PRK13851 type IV secretion sys 96.7 0.0016 3.4E-08 68.3 4.4 41 180-220 149-189 (344)
35 PRK07764 DNA polymerase III su 96.7 0.01 2.2E-07 69.1 11.2 120 439-560 27-177 (824)
36 PRK14962 DNA polymerase III su 96.7 0.01 2.2E-07 65.1 10.5 120 438-559 25-173 (472)
37 PRK13900 type IV secretion sys 96.6 0.0021 4.6E-08 67.2 4.9 41 181-221 148-188 (332)
38 TIGR00635 ruvB Holliday juncti 96.6 0.0095 2.1E-07 61.4 9.6 76 447-529 30-106 (305)
39 cd00009 AAA The AAA+ (ATPases 96.6 0.0019 4.2E-08 57.5 3.8 27 192-218 18-44 (151)
40 PRK06645 DNA polymerase III su 96.6 0.012 2.6E-07 64.9 10.7 104 448-559 44-184 (507)
41 smart00382 AAA ATPases associa 96.6 0.0014 3E-08 57.8 2.8 27 193-219 2-28 (148)
42 TIGR01650 PD_CobS cobaltochela 96.5 0.0067 1.5E-07 62.9 7.6 86 439-530 57-160 (327)
43 PF05496 RuvB_N: Holliday junc 96.5 0.014 3E-07 57.2 9.3 66 446-518 49-114 (233)
44 PF07728 AAA_5: AAA domain (dy 96.5 0.0012 2.5E-08 59.8 1.8 24 195-218 1-24 (139)
45 cd01130 VirB11-like_ATPase Typ 96.5 0.0029 6.2E-08 60.6 4.5 39 181-219 13-51 (186)
46 PRK14957 DNA polymerase III su 96.5 0.017 3.7E-07 64.2 11.1 119 439-559 28-175 (546)
47 TIGR03015 pepcterm_ATPase puta 96.5 0.024 5.2E-07 57.1 11.2 88 442-529 38-148 (269)
48 PF13401 AAA_22: AAA domain; P 96.4 0.0094 2E-07 52.9 7.2 93 445-537 2-121 (131)
49 PRK13342 recombination factor 96.4 0.015 3.1E-07 63.0 9.9 82 439-525 27-112 (413)
50 PF00437 T2SE: Type II/IV secr 96.4 0.0026 5.7E-08 64.5 3.8 53 168-220 102-154 (270)
51 PLN03025 replication factor C 96.4 0.014 2.9E-07 60.9 8.8 79 448-526 35-120 (319)
52 PRK07003 DNA polymerase III su 96.4 0.017 3.7E-07 65.7 10.0 115 441-560 30-176 (830)
53 PRK13833 conjugal transfer pro 96.3 0.0037 7.9E-08 65.0 4.2 36 182-217 133-168 (323)
54 PRK14952 DNA polymerase III su 96.3 0.032 7E-07 62.6 11.8 115 440-559 26-174 (584)
55 PRK14963 DNA polymerase III su 96.3 0.022 4.8E-07 63.0 10.4 108 447-559 35-172 (504)
56 PF00004 AAA: ATPase family as 96.3 0.0025 5.3E-08 56.5 2.4 23 196-218 1-23 (132)
57 KOG0738|consensus 96.3 0.016 3.4E-07 60.5 8.5 28 191-218 243-270 (491)
58 PHA02244 ATPase-like protein 96.2 0.0054 1.2E-07 64.4 5.0 34 184-217 110-143 (383)
59 PRK13342 recombination factor 96.2 0.007 1.5E-07 65.4 6.1 36 183-218 24-61 (413)
60 KOG0744|consensus 96.2 0.002 4.2E-08 65.6 1.4 29 190-218 174-202 (423)
61 TIGR03346 chaperone_ClpB ATP-d 96.2 0.016 3.5E-07 68.3 9.0 110 422-534 170-304 (852)
62 PRK07994 DNA polymerase III su 96.1 0.019 4.1E-07 64.9 9.0 119 439-559 28-175 (647)
63 TIGR02782 TrbB_P P-type conjug 96.1 0.0051 1.1E-07 63.4 4.1 37 182-218 121-157 (299)
64 PRK14961 DNA polymerase III su 96.1 0.038 8.2E-07 58.7 10.8 119 430-559 22-175 (363)
65 PRK14959 DNA polymerase III su 96.1 0.029 6.4E-07 63.0 10.1 117 438-556 27-172 (624)
66 TIGR03345 VI_ClpV1 type VI sec 96.1 0.035 7.6E-07 65.3 11.2 112 421-534 183-318 (852)
67 PRK13341 recombination factor 96.1 0.025 5.4E-07 65.1 9.8 81 437-518 41-122 (725)
68 PRK14964 DNA polymerase III su 96.1 0.041 8.8E-07 60.4 10.9 107 449-560 37-173 (491)
69 PRK12402 replication factor C 96.1 0.03 6.6E-07 58.3 9.7 32 440-471 28-60 (337)
70 PF13671 AAA_33: AAA domain; P 96.0 0.004 8.6E-08 56.3 2.5 23 196-218 2-24 (143)
71 TIGR02788 VirB11 P-type DNA tr 96.0 0.0063 1.4E-07 63.1 4.3 39 182-220 133-171 (308)
72 TIGR01650 PD_CobS cobaltochela 96.0 0.0055 1.2E-07 63.5 3.8 45 171-218 45-89 (327)
73 TIGR03015 pepcterm_ATPase puta 96.0 0.0087 1.9E-07 60.3 5.2 48 171-218 20-68 (269)
74 PRK12323 DNA polymerase III su 96.0 0.027 5.9E-07 63.2 9.3 109 447-560 37-181 (700)
75 PF13401 AAA_22: AAA domain; P 96.0 0.0038 8.2E-08 55.5 2.0 28 191-218 2-29 (131)
76 TIGR02639 ClpA ATP-dependent C 96.0 0.021 4.5E-07 66.3 8.5 77 438-515 193-284 (731)
77 PRK14958 DNA polymerase III su 95.9 0.033 7.1E-07 61.7 9.6 111 447-559 37-175 (509)
78 PRK07133 DNA polymerase III su 95.9 0.05 1.1E-06 62.2 11.0 116 439-559 30-174 (725)
79 PRK14951 DNA polymerase III su 95.9 0.036 7.7E-07 62.6 9.8 116 439-559 28-180 (618)
80 CHL00176 ftsH cell division pr 95.9 0.033 7.1E-07 63.3 9.5 65 448-515 217-285 (638)
81 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0096 2.1E-07 53.8 4.2 43 178-220 7-49 (133)
82 PF13173 AAA_14: AAA domain 95.9 0.0065 1.4E-07 54.3 3.1 27 192-218 1-27 (128)
83 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.0094 2E-07 58.4 4.4 28 190-217 35-62 (226)
84 PRK05342 clpX ATP-dependent pr 95.8 0.022 4.8E-07 61.4 7.4 87 431-517 86-185 (412)
85 PRK00080 ruvB Holliday junctio 95.8 0.046 1E-06 57.1 9.6 68 445-519 49-116 (328)
86 PF01078 Mg_chelatase: Magnesi 95.8 0.011 2.4E-07 57.3 4.3 36 184-219 13-48 (206)
87 PF13245 AAA_19: Part of AAA d 95.7 0.0091 2E-07 48.5 3.1 25 193-217 9-34 (76)
88 PRK14950 DNA polymerase III su 95.7 0.064 1.4E-06 60.6 11.0 108 447-559 37-176 (585)
89 PRK13894 conjugal transfer ATP 95.7 0.013 2.7E-07 61.1 4.8 36 182-217 137-172 (319)
90 PRK13341 recombination factor 95.6 0.019 4.1E-07 66.1 6.3 88 185-274 42-182 (725)
91 smart00382 AAA ATPases associa 95.6 0.034 7.4E-07 48.7 6.8 36 447-482 2-40 (148)
92 CHL00195 ycf46 Ycf46; Provisio 95.6 0.046 1E-06 60.1 9.0 67 444-514 257-327 (489)
93 PF00625 Guanylate_kin: Guanyl 95.6 0.008 1.7E-07 57.2 2.7 29 192-220 1-29 (183)
94 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.007 1.5E-07 64.0 2.5 35 184-218 125-159 (358)
95 PF13207 AAA_17: AAA domain; P 95.6 0.0071 1.5E-07 53.1 2.1 22 196-217 2-23 (121)
96 CHL00095 clpC Clp protease ATP 95.6 0.051 1.1E-06 63.9 9.7 107 436-544 188-321 (821)
97 PLN03025 replication factor C 95.6 0.0085 1.9E-07 62.4 3.0 32 186-217 25-58 (319)
98 PRK11331 5-methylcytosine-spec 95.5 0.11 2.4E-06 56.1 11.4 101 426-530 177-299 (459)
99 PRK08691 DNA polymerase III su 95.5 0.045 9.7E-07 62.1 8.7 77 439-519 28-133 (709)
100 KOG2028|consensus 95.5 0.039 8.4E-07 57.2 7.4 89 181-271 148-292 (554)
101 PRK00440 rfc replication facto 95.5 0.066 1.4E-06 55.2 9.3 72 448-519 39-116 (319)
102 PRK11034 clpA ATP-dependent Cl 95.5 0.04 8.7E-07 63.8 8.3 100 436-536 195-319 (758)
103 PRK06526 transposase; Provisio 95.5 0.0087 1.9E-07 60.3 2.6 29 189-217 94-122 (254)
104 TIGR02928 orc1/cdc6 family rep 95.4 0.11 2.3E-06 54.9 10.9 24 447-470 40-63 (365)
105 PRK08181 transposase; Validate 95.4 0.016 3.4E-07 58.9 4.3 33 185-217 98-130 (269)
106 PF13086 AAA_11: AAA domain; P 95.4 0.0086 1.9E-07 58.3 2.3 31 187-217 11-41 (236)
107 PRK12402 replication factor C 95.4 0.012 2.5E-07 61.5 3.4 33 186-218 27-61 (337)
108 PRK14954 DNA polymerase III su 95.4 0.11 2.3E-06 58.9 11.0 113 439-559 28-183 (620)
109 PRK04195 replication factor C 95.4 0.011 2.3E-07 65.3 3.1 50 169-218 13-64 (482)
110 PRK13764 ATPase; Provisional 95.3 0.012 2.6E-07 65.9 3.4 48 174-221 237-285 (602)
111 COG0630 VirB11 Type IV secreto 95.3 0.02 4.3E-07 59.5 4.7 45 176-221 127-171 (312)
112 PF13191 AAA_16: AAA ATPase do 95.3 0.0086 1.9E-07 56.4 1.9 27 192-218 23-49 (185)
113 PF00158 Sigma54_activat: Sigm 95.3 0.028 6E-07 53.0 5.2 37 180-216 9-45 (168)
114 PF07724 AAA_2: AAA domain (Cd 95.3 0.014 3.1E-07 55.1 3.1 89 445-534 1-109 (171)
115 TIGR01420 pilT_fam pilus retra 95.2 0.015 3.3E-07 61.2 3.6 35 184-218 113-147 (343)
116 cd01131 PilT Pilus retraction 95.2 0.011 2.3E-07 57.2 2.3 23 196-218 4-26 (198)
117 PRK05563 DNA polymerase III su 95.2 0.095 2.1E-06 58.9 10.1 108 447-559 37-175 (559)
118 COG1219 ClpX ATP-dependent pro 95.2 0.012 2.5E-07 60.0 2.5 27 192-218 96-122 (408)
119 TIGR02881 spore_V_K stage V sp 95.2 0.01 2.2E-07 60.0 2.1 26 192-217 41-66 (261)
120 PRK03992 proteasome-activating 95.2 0.038 8.2E-07 59.3 6.5 69 446-516 164-235 (389)
121 TIGR01241 FtsH_fam ATP-depende 95.2 0.055 1.2E-06 59.9 8.0 64 448-514 89-156 (495)
122 PRK08084 DNA replication initi 95.2 0.022 4.8E-07 56.6 4.4 45 172-217 23-69 (235)
123 PRK14737 gmk guanylate kinase; 95.1 0.012 2.7E-07 56.3 2.4 28 192-219 3-30 (186)
124 PRK14948 DNA polymerase III su 95.1 0.13 2.9E-06 58.3 10.9 126 426-559 18-177 (620)
125 KOG0743|consensus 95.1 0.045 9.7E-07 58.4 6.6 57 450-513 238-294 (457)
126 COG0606 Predicted ATPase with 95.1 0.015 3.4E-07 62.3 3.2 36 184-219 189-224 (490)
127 PF14532 Sigma54_activ_2: Sigm 95.1 0.022 4.8E-07 51.5 3.8 37 179-215 7-43 (138)
128 PRK14969 DNA polymerase III su 95.1 0.072 1.6E-06 59.4 8.6 69 447-519 37-133 (527)
129 COG1223 Predicted ATPase (AAA+ 95.1 0.012 2.6E-07 58.3 2.2 26 192-217 150-175 (368)
130 PRK14953 DNA polymerase III su 95.1 0.17 3.6E-06 55.9 11.2 111 447-559 37-175 (486)
131 PF03215 Rad17: Rad17 cell cyc 95.0 0.017 3.7E-07 63.9 3.4 50 169-218 18-70 (519)
132 TIGR03819 heli_sec_ATPase heli 95.0 0.025 5.4E-07 59.5 4.5 40 181-220 166-205 (340)
133 PRK05896 DNA polymerase III su 95.0 0.1 2.3E-06 58.4 9.5 115 440-559 29-175 (605)
134 TIGR02525 plasmid_TraJ plasmid 95.0 0.018 3.9E-07 61.1 3.4 35 184-218 140-174 (372)
135 PF03266 NTPase_1: NTPase; In 95.0 0.012 2.6E-07 55.5 1.8 25 195-219 1-25 (168)
136 COG2805 PilT Tfp pilus assembl 95.0 0.018 3.8E-07 58.4 3.1 48 173-220 104-152 (353)
137 COG2256 MGS1 ATPase related to 95.0 0.052 1.1E-06 57.1 6.6 84 185-271 38-174 (436)
138 COG0714 MoxR-like ATPases [Gen 95.0 0.025 5.5E-07 59.1 4.4 38 181-218 31-68 (329)
139 PRK00411 cdc6 cell division co 95.0 0.027 5.9E-07 60.2 4.8 38 181-218 41-80 (394)
140 PF03193 DUF258: Protein of un 95.0 0.02 4.3E-07 53.4 3.1 31 186-217 29-59 (161)
141 cd01129 PulE-GspE PulE/GspE Th 95.0 0.026 5.5E-07 57.2 4.2 34 186-219 73-106 (264)
142 PRK14956 DNA polymerase III su 94.9 0.088 1.9E-06 57.5 8.4 23 196-218 43-65 (484)
143 PRK07940 DNA polymerase III su 94.9 0.15 3.3E-06 54.7 10.1 107 448-559 36-173 (394)
144 cd00071 GMPK Guanosine monopho 94.9 0.018 3.9E-07 52.3 2.6 25 195-219 1-25 (137)
145 PRK08903 DnaA regulatory inact 94.9 0.032 6.9E-07 54.9 4.6 27 191-217 40-66 (227)
146 PF13238 AAA_18: AAA domain; P 94.9 0.015 3.3E-07 51.1 2.1 22 196-217 1-22 (129)
147 PF07726 AAA_3: ATPase family 94.9 0.035 7.6E-07 49.6 4.3 37 449-485 1-37 (131)
148 PRK09111 DNA polymerase III su 94.9 0.14 3E-06 57.8 10.1 124 425-559 25-188 (598)
149 PF05496 RuvB_N: Holliday junc 94.9 0.016 3.4E-07 56.8 2.3 24 195-218 52-75 (233)
150 PHA02244 ATPase-like protein 94.8 0.075 1.6E-06 56.0 7.3 89 437-531 110-207 (383)
151 TIGR03263 guanyl_kin guanylate 94.8 0.017 3.7E-07 54.5 2.4 27 193-219 1-27 (180)
152 PF12774 AAA_6: Hydrolytic ATP 94.8 0.49 1.1E-05 46.9 12.8 117 425-562 11-127 (231)
153 COG0714 MoxR-like ATPases [Gen 94.8 0.063 1.4E-06 56.2 6.9 85 446-530 42-138 (329)
154 PF01695 IstB_IS21: IstB-like 94.8 0.013 2.9E-07 55.7 1.6 32 187-218 41-72 (178)
155 PF08477 Miro: Miro-like prote 94.8 0.019 4.1E-07 50.0 2.4 23 196-218 2-24 (119)
156 PRK06647 DNA polymerase III su 94.8 0.16 3.4E-06 57.1 10.1 117 439-560 28-176 (563)
157 smart00072 GuKc Guanylate kina 94.8 0.02 4.4E-07 54.6 2.8 26 193-218 2-27 (184)
158 KOG2004|consensus 94.8 0.097 2.1E-06 58.7 8.2 77 432-510 423-511 (906)
159 PF13555 AAA_29: P-loop contai 94.8 0.019 4.2E-07 44.5 2.1 25 193-217 23-47 (62)
160 TIGR02928 orc1/cdc6 family rep 94.7 0.03 6.5E-07 59.2 4.2 37 182-218 27-65 (365)
161 PRK00440 rfc replication facto 94.7 0.02 4.4E-07 59.1 2.8 33 186-218 29-63 (319)
162 TIGR01242 26Sp45 26S proteasom 94.7 0.057 1.2E-06 57.3 6.2 66 448-515 157-225 (364)
163 PRK14955 DNA polymerase III su 94.7 0.14 3E-06 55.1 9.2 113 440-557 29-181 (397)
164 COG0194 Gmk Guanylate kinase [ 94.7 0.036 7.8E-07 52.5 4.0 26 192-217 3-28 (191)
165 TIGR00763 lon ATP-dependent pr 94.7 0.15 3.2E-06 59.7 10.0 67 447-515 346-424 (775)
166 COG1222 RPT1 ATP-dependent 26S 94.6 0.019 4.1E-07 59.5 2.3 23 194-216 186-208 (406)
167 PTZ00454 26S protease regulato 94.6 0.067 1.4E-06 57.5 6.5 67 446-514 178-247 (398)
168 PF04665 Pox_A32: Poxvirus A32 94.6 0.025 5.4E-07 56.3 2.9 33 186-218 6-38 (241)
169 TIGR00382 clpX endopeptidase C 94.6 0.11 2.4E-06 55.8 8.1 69 447-515 116-191 (413)
170 PRK06893 DNA replication initi 94.6 0.045 9.8E-07 54.2 4.8 26 192-217 37-63 (229)
171 TIGR02880 cbbX_cfxQ probable R 94.6 0.02 4.2E-07 58.7 2.2 25 193-217 58-82 (284)
172 PF05729 NACHT: NACHT domain 94.5 0.02 4.4E-07 52.6 2.0 26 194-219 1-26 (166)
173 PRK00300 gmk guanylate kinase; 94.5 0.02 4.4E-07 55.2 2.1 28 191-218 3-30 (205)
174 PRK10078 ribose 1,5-bisphospho 94.5 0.025 5.3E-07 54.0 2.6 25 193-217 2-26 (186)
175 PF06068 TIP49: TIP49 C-termin 94.5 0.038 8.3E-07 57.8 4.1 51 170-220 23-77 (398)
176 CHL00181 cbbX CbbX; Provisiona 94.5 0.021 4.5E-07 58.6 2.2 26 192-217 58-83 (287)
177 PRK09183 transposase/IS protei 94.5 0.023 4.9E-07 57.5 2.4 27 190-216 99-125 (259)
178 PRK14965 DNA polymerase III su 94.4 0.2 4.3E-06 56.6 10.0 107 448-559 38-175 (576)
179 TIGR02881 spore_V_K stage V sp 94.4 0.074 1.6E-06 53.7 6.0 66 447-516 42-116 (261)
180 KOG0989|consensus 94.4 0.039 8.5E-07 56.0 3.9 37 183-219 46-83 (346)
181 COG2804 PulE Type II secretory 94.4 0.03 6.5E-07 60.7 3.1 32 191-222 256-287 (500)
182 PF05673 DUF815: Protein of un 94.4 0.024 5.2E-07 56.2 2.2 28 192-219 51-78 (249)
183 PRK11331 5-methylcytosine-spec 94.3 0.039 8.5E-07 59.6 3.9 29 190-218 191-219 (459)
184 smart00763 AAA_PrkA PrkA AAA d 94.3 0.025 5.5E-07 59.3 2.4 28 192-219 77-104 (361)
185 KOG0731|consensus 94.3 0.11 2.4E-06 59.2 7.6 64 444-515 342-413 (774)
186 COG1224 TIP49 DNA helicase TIP 94.3 0.045 9.9E-07 56.6 4.1 52 169-220 37-92 (450)
187 PRK13531 regulatory ATPase Rav 94.3 0.032 7E-07 60.7 3.2 31 187-217 33-63 (498)
188 TIGR02533 type_II_gspE general 94.3 0.062 1.3E-06 59.2 5.4 49 182-230 230-280 (486)
189 PRK09087 hypothetical protein; 94.2 0.046 9.9E-07 54.1 3.9 24 193-216 44-67 (226)
190 PRK00131 aroK shikimate kinase 94.2 0.028 6E-07 52.4 2.3 26 192-217 3-28 (175)
191 PF00910 RNA_helicase: RNA hel 94.2 0.025 5.5E-07 48.9 1.8 22 196-217 1-22 (107)
192 PF02367 UPF0079: Uncharacteri 94.2 0.052 1.1E-06 48.3 3.8 42 179-220 1-42 (123)
193 PRK11608 pspF phage shock prot 94.2 0.05 1.1E-06 56.9 4.3 44 172-215 8-51 (326)
194 TIGR00764 lon_rel lon-related 94.2 0.045 9.8E-07 62.0 4.2 38 184-221 28-65 (608)
195 PF00270 DEAD: DEAD/DEAH box h 94.2 0.05 1.1E-06 50.3 3.9 31 183-214 5-35 (169)
196 PRK08118 topology modulation p 94.1 0.03 6.6E-07 52.6 2.4 25 194-218 2-26 (167)
197 TIGR00635 ruvB Holliday juncti 94.1 0.028 6.2E-07 57.9 2.3 25 194-218 31-55 (305)
198 PRK03992 proteasome-activating 94.1 0.03 6.5E-07 60.0 2.5 25 193-217 165-189 (389)
199 PF01637 Arch_ATPase: Archaeal 94.1 0.039 8.5E-07 53.6 3.2 26 193-218 20-45 (234)
200 PTZ00454 26S protease regulato 94.1 0.03 6.5E-07 60.1 2.5 26 192-217 178-203 (398)
201 TIGR03689 pup_AAA proteasome A 94.1 0.028 6.2E-07 61.9 2.3 37 514-552 464-502 (512)
202 TIGR01242 26Sp45 26S proteasom 94.1 0.03 6.5E-07 59.5 2.5 25 193-217 156-180 (364)
203 PRK08727 hypothetical protein; 94.1 0.056 1.2E-06 53.7 4.3 26 192-217 40-65 (233)
204 PRK14722 flhF flagellar biosyn 94.1 0.028 6E-07 59.6 2.1 30 188-217 132-161 (374)
205 PRK07261 topology modulation p 94.0 0.034 7.4E-07 52.5 2.4 23 195-217 2-24 (171)
206 PRK10865 protein disaggregatio 94.0 0.22 4.8E-06 58.8 9.7 107 425-532 569-698 (857)
207 TIGR02322 phosphon_PhnN phosph 94.0 0.034 7.3E-07 52.5 2.4 25 194-218 2-26 (179)
208 PRK00411 cdc6 cell division co 94.0 0.32 7E-06 51.9 10.2 35 447-481 55-94 (394)
209 PRK12377 putative replication 94.0 0.054 1.2E-06 54.3 3.9 32 187-218 95-126 (248)
210 PF00931 NB-ARC: NB-ARC domain 94.0 0.32 6.8E-06 49.3 9.7 55 435-489 4-66 (287)
211 PRK08084 DNA replication initi 94.0 0.25 5.3E-06 49.1 8.6 23 448-470 46-68 (235)
212 PF00448 SRP54: SRP54-type pro 93.9 0.032 6.9E-07 54.0 2.1 23 195-217 3-25 (196)
213 PF00308 Bac_DnaA: Bacterial d 93.9 0.077 1.7E-06 52.2 4.9 45 173-217 10-58 (219)
214 KOG0727|consensus 93.9 0.032 7E-07 55.0 2.1 25 192-216 188-212 (408)
215 PRK08116 hypothetical protein; 93.9 0.059 1.3E-06 54.7 4.1 27 192-218 113-139 (268)
216 PF12846 AAA_10: AAA-like doma 93.9 0.032 6.9E-07 56.7 2.2 25 193-217 1-25 (304)
217 KOG0743|consensus 93.9 0.032 6.9E-07 59.5 2.2 29 194-222 236-264 (457)
218 CHL00195 ycf46 Ycf46; Provisio 93.9 0.032 7E-07 61.3 2.3 26 192-217 258-283 (489)
219 PRK10733 hflB ATP-dependent me 93.9 0.15 3.3E-06 58.3 7.8 68 445-514 184-253 (644)
220 PRK06620 hypothetical protein; 93.9 0.062 1.3E-06 52.7 4.1 52 160-211 6-62 (214)
221 KOG0733|consensus 93.9 0.15 3.2E-06 56.4 7.1 68 445-516 222-293 (802)
222 COG1474 CDC6 Cdc6-related prot 93.9 0.058 1.3E-06 57.2 4.1 38 182-219 29-68 (366)
223 PF10662 PduV-EutP: Ethanolami 93.9 0.034 7.4E-07 50.7 2.0 22 194-215 2-23 (143)
224 TIGR02688 conserved hypothetic 93.8 0.057 1.2E-06 57.7 3.9 38 178-215 192-231 (449)
225 COG1419 FlhF Flagellar GTP-bin 93.8 0.043 9.4E-07 58.1 3.0 31 183-213 188-223 (407)
226 cd00227 CPT Chloramphenicol (C 93.8 0.041 8.8E-07 51.9 2.5 26 193-218 2-27 (175)
227 PRK10436 hypothetical protein; 93.8 0.066 1.4E-06 58.5 4.5 33 187-219 212-244 (462)
228 TIGR01243 CDC48 AAA family ATP 93.8 0.15 3.2E-06 59.4 7.6 66 446-514 211-280 (733)
229 PF04851 ResIII: Type III rest 93.8 0.062 1.3E-06 50.2 3.7 25 193-217 25-49 (184)
230 cd02019 NK Nucleoside/nucleoti 93.8 0.043 9.3E-07 43.5 2.2 22 196-217 2-23 (69)
231 PRK06835 DNA replication prote 93.8 0.061 1.3E-06 56.2 4.0 32 187-218 177-208 (329)
232 COG0464 SpoVK ATPases of the A 93.7 0.22 4.7E-06 55.1 8.6 69 444-514 273-344 (494)
233 KOG0060|consensus 93.7 0.036 7.8E-07 60.7 2.2 28 186-213 454-481 (659)
234 PRK06305 DNA polymerase III su 93.7 0.35 7.6E-06 52.9 9.9 126 426-559 19-177 (451)
235 cd01870 RhoA_like RhoA-like su 93.7 0.047 1E-06 50.9 2.7 24 194-217 2-25 (175)
236 PRK14738 gmk guanylate kinase; 93.7 0.037 8.1E-07 53.8 2.1 25 192-216 12-36 (206)
237 PTZ00361 26 proteosome regulat 93.6 0.11 2.4E-06 56.4 5.8 66 446-513 216-284 (438)
238 TIGR03420 DnaA_homol_Hda DnaA 93.6 0.27 5.7E-06 48.1 8.1 27 445-471 36-62 (226)
239 PRK05201 hslU ATP-dependent pr 93.6 0.12 2.5E-06 55.5 5.8 35 447-481 50-84 (443)
240 PF01926 MMR_HSR1: 50S ribosom 93.6 0.044 9.4E-07 47.7 2.2 20 196-215 2-21 (116)
241 TIGR02858 spore_III_AA stage I 93.6 0.07 1.5E-06 54.2 4.0 37 182-218 98-136 (270)
242 PRK00080 ruvB Holliday junctio 93.6 0.039 8.5E-07 57.6 2.3 26 193-218 51-76 (328)
243 PTZ00112 origin recognition co 93.6 0.068 1.5E-06 61.7 4.2 40 179-218 764-806 (1164)
244 cd01120 RecA-like_NTPases RecA 93.6 0.042 9.1E-07 50.1 2.2 23 195-217 1-23 (165)
245 TIGR02538 type_IV_pilB type IV 93.6 0.072 1.6E-06 59.9 4.4 35 185-219 308-342 (564)
246 TIGR02397 dnaX_nterm DNA polym 93.5 0.59 1.3E-05 49.1 11.1 123 426-559 16-173 (355)
247 COG4962 CpaF Flp pilus assembl 93.5 0.077 1.7E-06 55.0 4.1 51 171-221 151-201 (355)
248 PRK07952 DNA replication prote 93.5 0.51 1.1E-05 47.2 9.9 76 447-529 99-189 (244)
249 cd00464 SK Shikimate kinase (S 93.5 0.047 1E-06 49.9 2.4 23 195-217 1-23 (154)
250 PTZ00361 26 proteosome regulat 93.5 0.042 9E-07 59.6 2.3 26 192-217 216-241 (438)
251 PF07724 AAA_2: AAA domain (Cd 93.5 0.041 8.9E-07 52.0 1.9 25 194-218 4-28 (171)
252 COG0470 HolB ATPase involved i 93.4 0.18 4E-06 52.0 6.9 110 447-560 23-166 (325)
253 PRK08939 primosomal protein Dn 93.4 0.074 1.6E-06 55.1 3.9 27 192-218 155-181 (306)
254 TIGR00390 hslU ATP-dependent p 93.4 0.17 3.8E-06 54.2 6.7 35 447-481 47-81 (441)
255 PRK13948 shikimate kinase; Pro 93.4 0.17 3.6E-06 48.3 6.0 56 445-500 8-76 (182)
256 TIGR01313 therm_gnt_kin carboh 93.4 0.047 1E-06 50.7 2.2 23 196-218 1-23 (163)
257 PRK14530 adenylate kinase; Pro 93.4 0.051 1.1E-06 53.1 2.5 25 193-217 3-27 (215)
258 cd00046 DEXDc DEAD-like helica 93.3 0.054 1.2E-06 47.4 2.4 24 194-217 1-24 (144)
259 COG1126 GlnQ ABC-type polar am 93.3 0.033 7.1E-07 54.0 1.0 28 190-218 25-52 (240)
260 PF00005 ABC_tran: ABC transpo 93.3 0.038 8.3E-07 49.5 1.4 27 191-217 9-35 (137)
261 KOG2228|consensus 93.3 0.41 8.9E-06 49.5 8.8 26 191-216 47-72 (408)
262 PHA00729 NTP-binding motif con 93.3 0.044 9.6E-07 53.9 1.9 24 194-217 18-41 (226)
263 PRK14962 DNA polymerase III su 93.3 0.074 1.6E-06 58.4 3.8 23 196-218 39-61 (472)
264 PF00158 Sigma54_activat: Sigm 93.3 0.6 1.3E-05 43.9 9.5 98 431-533 6-122 (168)
265 PRK05541 adenylylsulfate kinas 93.3 0.044 9.4E-07 51.7 1.8 28 191-218 5-32 (176)
266 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.055 1.2E-06 51.2 2.5 22 196-217 2-23 (183)
267 cd00820 PEPCK_HprK Phosphoenol 93.2 0.043 9.4E-07 47.5 1.5 24 191-214 13-36 (107)
268 COG0467 RAD55 RecA-superfamily 93.2 0.057 1.2E-06 54.4 2.6 27 191-217 21-47 (260)
269 PRK06762 hypothetical protein; 93.2 0.053 1.1E-06 50.5 2.2 23 195-217 4-26 (166)
270 KOG0742|consensus 93.2 0.071 1.5E-06 56.1 3.3 51 166-216 351-407 (630)
271 PRK05342 clpX ATP-dependent pr 93.2 0.055 1.2E-06 58.3 2.6 25 193-217 108-132 (412)
272 cd04137 RheB Rheb (Ras Homolog 93.2 0.058 1.3E-06 50.6 2.5 23 194-216 2-24 (180)
273 PRK13949 shikimate kinase; Pro 93.2 0.15 3.1E-06 48.1 5.2 51 449-499 3-66 (169)
274 KOG0991|consensus 93.2 0.052 1.1E-06 53.1 2.1 28 195-222 50-77 (333)
275 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.057 1.2E-06 53.7 2.5 25 192-216 20-44 (237)
276 cd01124 KaiC KaiC is a circadi 93.2 0.055 1.2E-06 51.2 2.3 21 196-216 2-22 (187)
277 cd04119 RJL RJL (RabJ-Like) su 93.2 0.065 1.4E-06 49.1 2.8 23 195-217 2-24 (168)
278 PRK13947 shikimate kinase; Pro 93.1 0.29 6.2E-06 45.6 7.2 31 449-479 3-33 (171)
279 PF05621 TniB: Bacterial TniB 93.1 0.084 1.8E-06 54.0 3.7 58 194-275 62-119 (302)
280 PF06414 Zeta_toxin: Zeta toxi 93.1 0.076 1.6E-06 51.3 3.3 23 195-217 17-39 (199)
281 PF07726 AAA_3: ATPase family 93.1 0.039 8.4E-07 49.3 1.1 24 195-218 1-24 (131)
282 COG1219 ClpX ATP-dependent pro 93.1 0.24 5.2E-06 50.7 6.8 100 396-502 48-156 (408)
283 cd04138 H_N_K_Ras_like H-Ras/N 93.1 0.067 1.5E-06 48.7 2.7 22 195-216 3-24 (162)
284 TIGR00382 clpX endopeptidase C 93.1 0.059 1.3E-06 57.9 2.6 25 193-217 116-140 (413)
285 PRK14970 DNA polymerase III su 93.1 0.47 1E-05 50.3 9.5 126 426-559 19-164 (367)
286 PRK07952 DNA replication prote 93.0 0.13 2.8E-06 51.5 4.8 26 193-218 99-124 (244)
287 PF09439 SRPRB: Signal recogni 93.0 0.06 1.3E-06 51.3 2.3 30 192-221 2-31 (181)
288 PRK06921 hypothetical protein; 93.0 0.099 2.1E-06 53.0 4.0 27 192-218 116-142 (266)
289 KOG0734|consensus 93.0 0.054 1.2E-06 58.7 2.2 24 193-216 337-360 (752)
290 PF02562 PhoH: PhoH-like prote 93.0 0.087 1.9E-06 51.2 3.5 36 178-214 5-40 (205)
291 KOG2028|consensus 93.0 0.28 6E-06 51.1 7.1 62 448-513 163-230 (554)
292 PRK05564 DNA polymerase III su 93.0 0.5 1.1E-05 49.0 9.3 116 439-559 16-149 (313)
293 cd00876 Ras Ras family. The R 93.0 0.074 1.6E-06 48.3 2.8 22 195-216 1-22 (160)
294 PRK14088 dnaA chromosomal repl 93.0 0.12 2.6E-06 56.4 4.8 24 194-217 131-154 (440)
295 PRK14532 adenylate kinase; Pro 93.0 0.065 1.4E-06 51.0 2.5 25 194-218 1-25 (188)
296 PRK10536 hypothetical protein; 93.0 0.096 2.1E-06 52.5 3.7 37 179-216 61-97 (262)
297 cd02021 GntK Gluconate kinase 93.0 0.067 1.4E-06 48.9 2.5 22 196-217 2-23 (150)
298 cd00877 Ran Ran (Ras-related n 92.9 0.074 1.6E-06 49.5 2.8 23 195-217 2-24 (166)
299 PRK05057 aroK shikimate kinase 92.9 0.062 1.3E-06 50.7 2.3 26 192-217 3-28 (172)
300 PRK12323 DNA polymerase III su 92.9 0.28 6.2E-06 55.3 7.6 24 195-218 40-63 (700)
301 PRK13407 bchI magnesium chelat 92.9 0.11 2.4E-06 54.4 4.2 29 191-219 27-55 (334)
302 PRK14531 adenylate kinase; Pro 92.9 0.064 1.4E-06 51.1 2.3 25 193-217 2-26 (183)
303 PF13207 AAA_17: AAA domain; P 92.9 0.14 3E-06 44.7 4.3 31 450-480 2-32 (121)
304 PF00071 Ras: Ras family; Int 92.9 0.082 1.8E-06 48.4 3.0 26 196-221 2-27 (162)
305 TIGR01360 aden_kin_iso1 adenyl 92.9 0.065 1.4E-06 50.7 2.3 24 194-217 4-27 (188)
306 PRK10820 DNA-binding transcrip 92.8 0.11 2.5E-06 57.8 4.5 48 166-213 200-247 (520)
307 PF00735 Septin: Septin; Inte 92.8 0.057 1.2E-06 55.2 2.0 23 194-216 5-27 (281)
308 TIGR00362 DnaA chromosomal rep 92.8 0.13 2.8E-06 55.5 4.8 51 166-217 106-160 (405)
309 TIGR03689 pup_AAA proteasome A 92.8 0.21 4.5E-06 55.2 6.4 69 446-515 215-299 (512)
310 cd04160 Arfrp1 Arfrp1 subfamil 92.8 0.069 1.5E-06 49.2 2.3 23 195-217 1-23 (167)
311 PRK14964 DNA polymerase III su 92.8 0.4 8.7E-06 52.8 8.6 23 194-216 36-58 (491)
312 cd01918 HprK_C HprK/P, the bif 92.8 0.065 1.4E-06 49.3 2.1 25 192-216 13-37 (149)
313 TIGR00602 rad24 checkpoint pro 92.8 0.46 9.9E-06 54.0 9.2 53 425-477 85-140 (637)
314 PRK14961 DNA polymerase III su 92.8 0.11 2.3E-06 55.3 4.0 24 195-218 40-63 (363)
315 PRK00149 dnaA chromosomal repl 92.7 0.14 3E-06 56.1 5.0 55 163-217 115-172 (450)
316 COG5008 PilU Tfp pilus assembl 92.7 0.098 2.1E-06 52.2 3.3 51 172-222 105-156 (375)
317 PRK12377 putative replication 92.7 0.5 1.1E-05 47.4 8.5 109 447-562 101-235 (248)
318 cd04117 Rab15 Rab15 subfamily. 92.7 0.081 1.8E-06 48.9 2.7 22 195-216 2-23 (161)
319 PRK07003 DNA polymerase III su 92.7 0.32 6.9E-06 55.8 7.7 24 195-218 40-63 (830)
320 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.7 0.073 1.6E-06 51.5 2.4 26 193-218 38-63 (205)
321 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 92.7 0.082 1.8E-06 48.8 2.7 22 195-216 4-25 (166)
322 PRK10646 ADP-binding protein; 92.7 0.14 3.1E-06 47.3 4.2 43 177-219 12-54 (153)
323 TIGR01817 nifA Nif-specific re 92.6 0.13 2.8E-06 57.5 4.7 55 159-213 185-239 (534)
324 COG4619 ABC-type uncharacteriz 92.6 0.086 1.9E-06 49.3 2.6 32 190-221 26-57 (223)
325 cd01129 PulE-GspE PulE/GspE Th 92.6 0.23 4.9E-06 50.3 6.0 91 435-532 68-175 (264)
326 PRK08233 hypothetical protein; 92.6 0.077 1.7E-06 49.9 2.5 25 194-218 4-28 (182)
327 PF13173 AAA_14: AAA domain 92.6 0.32 6.9E-06 43.3 6.3 89 448-539 3-96 (128)
328 TIGR00602 rad24 checkpoint pro 92.6 0.064 1.4E-06 60.7 2.2 61 152-218 72-135 (637)
329 PRK06835 DNA replication prote 92.6 1.4 3.1E-05 46.0 12.1 112 445-564 181-319 (329)
330 PRK04328 hypothetical protein; 92.6 0.11 2.5E-06 52.0 3.8 25 192-216 22-46 (249)
331 PRK04040 adenylate kinase; Pro 92.6 0.088 1.9E-06 50.5 2.8 24 195-218 4-27 (188)
332 PRK15429 formate hydrogenlyase 92.5 0.12 2.6E-06 59.6 4.4 49 168-216 374-422 (686)
333 TIGR03499 FlhF flagellar biosy 92.5 0.063 1.4E-06 54.9 1.9 26 192-217 193-218 (282)
334 KOG0731|consensus 92.5 0.063 1.4E-06 61.1 2.0 25 192-216 343-367 (774)
335 COG3854 SpoIIIAA ncharacterize 92.5 0.12 2.6E-06 50.6 3.5 36 185-220 128-164 (308)
336 TIGR01241 FtsH_fam ATP-depende 92.5 0.076 1.6E-06 58.8 2.5 25 193-217 88-112 (495)
337 PRK03839 putative kinase; Prov 92.5 0.08 1.7E-06 50.1 2.3 23 196-218 3-25 (180)
338 PF05673 DUF815: Protein of un 92.5 0.6 1.3E-05 46.5 8.5 35 445-479 50-87 (249)
339 TIGR02974 phageshock_pspF psp 92.4 0.13 2.8E-06 53.9 4.0 42 172-213 1-42 (329)
340 smart00175 RAB Rab subfamily o 92.4 0.093 2E-06 48.0 2.7 22 195-216 2-23 (164)
341 PF03205 MobB: Molybdopterin g 92.4 0.056 1.2E-06 49.3 1.1 25 196-220 3-27 (140)
342 cd04162 Arl9_Arfrp2_like Arl9/ 92.4 0.09 2E-06 48.8 2.6 21 196-216 2-22 (164)
343 cd00154 Rab Rab family. Rab G 92.4 0.097 2.1E-06 47.1 2.7 24 195-218 2-25 (159)
344 smart00173 RAS Ras subfamily o 92.4 0.097 2.1E-06 48.1 2.8 22 195-216 2-23 (164)
345 PF13604 AAA_30: AAA domain; P 92.4 0.15 3.3E-06 49.2 4.2 34 184-217 8-42 (196)
346 PRK09087 hypothetical protein; 92.4 0.36 7.8E-06 47.7 6.9 26 449-474 46-71 (226)
347 KOG0729|consensus 92.4 0.13 2.8E-06 51.3 3.6 35 188-223 206-240 (435)
348 PRK05480 uridine/cytidine kina 92.4 0.11 2.4E-06 50.4 3.2 26 192-217 5-30 (209)
349 cd04163 Era Era subfamily. Er 92.3 0.082 1.8E-06 48.0 2.1 23 194-216 4-26 (168)
350 TIGR02528 EutP ethanolamine ut 92.2 0.079 1.7E-06 47.6 1.9 22 195-216 2-23 (142)
351 cd04146 RERG_RasL11_like RERG/ 92.2 0.1 2.2E-06 48.2 2.7 21 196-216 2-22 (165)
352 TIGR00390 hslU ATP-dependent p 92.2 0.087 1.9E-06 56.4 2.5 46 399-445 334-383 (441)
353 COG3839 MalK ABC-type sugar tr 92.2 0.066 1.4E-06 55.8 1.5 49 190-239 26-81 (338)
354 cd04108 Rab36_Rab34 Rab34/Rab3 92.2 0.1 2.2E-06 48.9 2.7 23 195-217 2-24 (170)
355 PRK11608 pspF phage shock prot 92.2 0.71 1.5E-05 48.3 9.3 102 430-532 12-128 (326)
356 cd04110 Rab35 Rab35 subfamily. 92.2 0.1 2.2E-06 50.3 2.7 23 194-216 7-29 (199)
357 cd04115 Rab33B_Rab33A Rab33B/R 92.2 0.1 2.3E-06 48.5 2.7 23 194-216 3-25 (170)
358 PRK05642 DNA replication initi 92.2 0.16 3.4E-06 50.5 4.1 48 170-217 18-69 (234)
359 TIGR00231 small_GTP small GTP- 92.2 0.085 1.8E-06 47.1 2.1 24 194-217 2-25 (161)
360 cd04140 ARHI_like ARHI subfami 92.2 0.11 2.3E-06 48.2 2.7 23 194-216 2-24 (165)
361 cd01860 Rab5_related Rab5-rela 92.2 0.088 1.9E-06 48.2 2.2 22 195-216 3-24 (163)
362 PRK13947 shikimate kinase; Pro 92.2 0.093 2E-06 49.0 2.4 23 195-217 3-25 (171)
363 PRK15424 propionate catabolism 92.2 0.14 3E-06 57.1 4.1 48 169-216 218-265 (538)
364 PLN02772 guanylate kinase 92.2 0.092 2E-06 55.7 2.5 28 192-219 134-161 (398)
365 cd00157 Rho Rho (Ras homology) 92.1 0.11 2.4E-06 47.9 2.8 23 195-217 2-24 (171)
366 COG4525 TauB ABC-type taurine 92.1 0.075 1.6E-06 50.8 1.7 49 189-239 27-80 (259)
367 PRK08451 DNA polymerase III su 92.1 1 2.2E-05 50.2 10.7 105 447-559 35-173 (535)
368 cd04136 Rap_like Rap-like subf 92.1 0.1 2.3E-06 47.6 2.7 23 194-216 2-24 (163)
369 smart00174 RHO Rho (Ras homolo 92.1 0.1 2.2E-06 48.6 2.5 22 196-217 1-22 (174)
370 PRK00625 shikimate kinase; Pro 92.1 0.095 2.1E-06 49.6 2.4 25 194-218 1-25 (173)
371 PF04548 AIG1: AIG1 family; I 92.1 0.082 1.8E-06 51.6 2.0 22 195-216 2-23 (212)
372 cd04134 Rho3 Rho3 subfamily. 92.1 0.1 2.2E-06 49.7 2.6 24 194-217 1-24 (189)
373 PRK05707 DNA polymerase III su 92.1 0.52 1.1E-05 49.3 8.1 107 448-559 22-162 (328)
374 cd02023 UMPK Uridine monophosp 92.1 0.12 2.7E-06 49.6 3.2 22 196-217 2-23 (198)
375 cd03258 ABC_MetN_methionine_tr 92.1 0.09 2E-06 51.9 2.3 28 190-217 28-55 (233)
376 cd04156 ARLTS1 ARLTS1 subfamil 92.1 0.092 2E-06 48.0 2.2 22 195-216 1-22 (160)
377 PF01637 Arch_ATPase: Archaeal 92.1 0.16 3.5E-06 49.2 4.1 36 436-471 8-44 (234)
378 PLN02199 shikimate kinase 92.1 0.64 1.4E-05 47.6 8.4 66 436-501 89-170 (303)
379 COG0563 Adk Adenylate kinase a 92.1 0.1 2.2E-06 49.6 2.5 23 195-217 2-24 (178)
380 CHL00176 ftsH cell division pr 92.1 0.1 2.2E-06 59.3 3.0 25 193-217 216-240 (638)
381 PF13245 AAA_19: Part of AAA d 92.1 0.28 6.1E-06 39.7 4.8 30 441-471 5-35 (76)
382 cd04159 Arl10_like Arl10-like 92.1 0.1 2.2E-06 47.0 2.4 21 196-216 2-22 (159)
383 PRK14088 dnaA chromosomal repl 92.1 0.62 1.4E-05 50.8 8.9 103 441-551 122-249 (440)
384 COG1136 SalX ABC-type antimicr 92.0 0.074 1.6E-06 52.3 1.5 28 190-218 28-55 (226)
385 cd01867 Rab8_Rab10_Rab13_like 92.0 0.11 2.4E-06 48.1 2.7 23 194-216 4-26 (167)
386 cd04113 Rab4 Rab4 subfamily. 92.0 0.096 2.1E-06 48.0 2.2 22 195-216 2-23 (161)
387 COG0466 Lon ATP-dependent Lon 92.0 0.51 1.1E-05 53.3 8.1 64 446-510 348-423 (782)
388 KOG1970|consensus 92.0 0.12 2.7E-06 56.3 3.2 32 186-217 94-134 (634)
389 PF13191 AAA_16: AAA ATPase do 91.9 0.29 6.4E-06 45.8 5.6 35 448-482 25-62 (185)
390 TIGR00376 DNA helicase, putati 91.9 0.11 2.4E-06 59.3 3.0 32 186-217 166-197 (637)
391 TIGR02329 propionate_PrpR prop 91.9 0.14 3.1E-06 56.9 3.8 59 168-226 210-270 (526)
392 KOG0739|consensus 91.9 0.34 7.3E-06 49.2 6.0 66 445-513 164-233 (439)
393 PRK08154 anaerobic benzoate ca 91.9 0.45 9.7E-06 49.4 7.3 48 430-478 117-164 (309)
394 cd04124 RabL2 RabL2 subfamily. 91.9 0.1 2.2E-06 48.1 2.3 22 195-216 2-23 (161)
395 PRK06645 DNA polymerase III su 91.9 0.13 2.8E-06 56.9 3.5 25 194-218 44-68 (507)
396 cd01861 Rab6 Rab6 subfamily. 91.9 0.097 2.1E-06 47.8 2.1 22 195-216 2-23 (161)
397 PRK13531 regulatory ATPase Rav 91.9 0.22 4.7E-06 54.5 5.0 29 443-471 35-63 (498)
398 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.9 0.098 2.1E-06 51.0 2.2 27 191-217 28-54 (218)
399 cd01864 Rab19 Rab19 subfamily. 91.9 0.12 2.6E-06 47.7 2.7 23 194-216 4-26 (165)
400 PRK12608 transcription termina 91.8 0.094 2E-06 55.4 2.2 35 185-219 123-159 (380)
401 PTZ00132 GTP-binding nuclear p 91.8 0.12 2.6E-06 50.3 2.8 26 193-218 9-34 (215)
402 PRK06547 hypothetical protein; 91.8 0.11 2.4E-06 49.1 2.4 23 196-218 18-40 (172)
403 cd04164 trmE TrmE (MnmE, ThdF, 91.8 0.099 2.2E-06 47.2 2.1 24 193-216 1-24 (157)
404 cd03292 ABC_FtsE_transporter F 91.8 0.1 2.3E-06 50.6 2.3 27 191-217 25-51 (214)
405 TIGR00678 holB DNA polymerase 91.7 0.15 3.3E-06 48.6 3.3 36 182-217 1-38 (188)
406 PRK13949 shikimate kinase; Pro 91.7 0.12 2.5E-06 48.7 2.5 24 194-217 2-25 (169)
407 PRK10787 DNA-binding ATP-depen 91.7 0.68 1.5E-05 54.1 9.2 68 446-515 347-426 (784)
408 COG5019 CDC3 Septin family pro 91.7 0.14 3.1E-06 53.3 3.2 39 176-216 8-46 (373)
409 KOG1803|consensus 91.7 0.17 3.6E-06 55.8 3.9 37 181-217 189-225 (649)
410 cd01428 ADK Adenylate kinase ( 91.7 0.12 2.5E-06 49.3 2.5 23 195-217 1-23 (194)
411 cd01892 Miro2 Miro2 subfamily. 91.7 0.12 2.6E-06 48.2 2.5 24 194-217 5-28 (169)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.7 0.11 2.3E-06 47.5 2.1 28 190-217 23-50 (144)
413 PRK05057 aroK shikimate kinase 91.6 0.53 1.1E-05 44.4 6.9 33 447-479 4-36 (172)
414 PRK08116 hypothetical protein; 91.6 3 6.6E-05 42.3 12.8 106 449-563 116-250 (268)
415 TIGR01166 cbiO cobalt transpor 91.6 0.11 2.4E-06 49.5 2.3 28 190-217 15-42 (190)
416 cd02027 APSK Adenosine 5'-phos 91.6 0.11 2.4E-06 47.8 2.1 23 196-218 2-24 (149)
417 TIGR02673 FtsE cell division A 91.6 0.12 2.5E-06 50.4 2.3 28 190-217 25-52 (214)
418 PF06745 KaiC: KaiC; InterPro 91.6 0.11 2.4E-06 51.0 2.3 25 192-216 18-42 (226)
419 cd01128 rho_factor Transcripti 91.5 0.12 2.7E-06 51.8 2.6 29 191-219 14-42 (249)
420 cd02020 CMPK Cytidine monophos 91.5 0.13 2.7E-06 46.5 2.4 23 196-218 2-24 (147)
421 cd01862 Rab7 Rab7 subfamily. 91.5 0.11 2.3E-06 48.1 1.9 22 195-216 2-23 (172)
422 PHA02530 pseT polynucleotide k 91.5 0.11 2.4E-06 53.3 2.3 25 194-218 3-27 (300)
423 PRK09825 idnK D-gluconate kina 91.5 0.14 3E-06 48.6 2.7 27 192-218 2-28 (176)
424 cd03269 ABC_putative_ATPase Th 91.5 0.12 2.5E-06 50.2 2.3 27 191-217 24-50 (210)
425 TIGR02868 CydC thiol reductant 91.5 0.11 2.4E-06 58.0 2.4 29 190-218 358-386 (529)
426 cd04157 Arl6 Arl6 subfamily. 91.5 0.11 2.4E-06 47.4 2.1 22 195-216 1-22 (162)
427 PRK13765 ATP-dependent proteas 91.5 0.16 3.5E-06 57.7 3.7 36 185-220 42-77 (637)
428 PRK14527 adenylate kinase; Pro 91.5 0.094 2E-06 50.2 1.6 26 192-217 5-30 (191)
429 cd04155 Arl3 Arl3 subfamily. 91.5 0.11 2.4E-06 48.2 2.1 24 193-216 14-37 (173)
430 PRK06217 hypothetical protein; 91.5 0.12 2.5E-06 49.2 2.2 25 194-218 2-26 (183)
431 cd01868 Rab11_like Rab11-like. 91.5 0.11 2.5E-06 47.7 2.1 23 194-216 4-26 (165)
432 PHA02544 44 clamp loader, smal 91.5 0.14 3.1E-06 52.9 3.1 32 186-217 33-67 (316)
433 cd01394 radB RadB. The archaea 91.5 0.16 3.4E-06 49.6 3.2 32 186-217 8-43 (218)
434 PRK05201 hslU ATP-dependent pr 91.5 0.12 2.7E-06 55.3 2.6 46 399-445 336-385 (443)
435 KOG0745|consensus 91.5 0.13 2.8E-06 54.6 2.7 26 193-218 226-251 (564)
436 cd03226 ABC_cobalt_CbiO_domain 91.5 0.12 2.5E-06 50.0 2.3 28 190-217 23-50 (205)
437 KOG0734|consensus 91.5 0.65 1.4E-05 50.7 7.9 61 446-514 337-405 (752)
438 TIGR03608 L_ocin_972_ABC putat 91.5 0.12 2.5E-06 50.0 2.3 27 191-217 22-48 (206)
439 COG1484 DnaC DNA replication p 91.5 0.15 3.2E-06 51.4 3.1 30 189-218 101-130 (254)
440 KOG0738|consensus 91.4 0.37 8E-06 50.7 5.9 67 394-479 211-277 (491)
441 PRK10751 molybdopterin-guanine 91.4 0.11 2.4E-06 49.1 2.0 24 196-219 9-32 (173)
442 cd03238 ABC_UvrA The excision 91.4 0.11 2.3E-06 49.4 1.9 25 190-214 18-42 (176)
443 PLN02674 adenylate kinase 91.4 0.18 3.8E-06 50.4 3.5 45 174-218 11-56 (244)
444 cd04177 RSR1 RSR1 subgroup. R 91.4 0.13 2.9E-06 47.6 2.5 23 195-217 3-25 (168)
445 cd04132 Rho4_like Rho4-like su 91.4 0.14 3.1E-06 48.3 2.8 23 195-217 2-24 (187)
446 TIGR00235 udk uridine kinase. 91.4 0.1 2.2E-06 50.7 1.8 27 192-218 5-31 (207)
447 TIGR02315 ABC_phnC phosphonate 91.4 0.12 2.6E-06 51.3 2.3 27 190-216 25-51 (243)
448 cd04103 Centaurin_gamma Centau 91.4 0.15 3.2E-06 47.2 2.7 22 195-216 2-23 (158)
449 cd04127 Rab27A Rab27a subfamil 91.4 0.14 3E-06 47.9 2.6 23 194-216 5-27 (180)
450 cd01865 Rab3 Rab3 subfamily. 91.4 0.14 3.1E-06 47.3 2.6 22 195-216 3-24 (165)
451 COG1618 Predicted nucleotide k 91.3 0.12 2.5E-06 48.0 1.9 31 192-222 4-34 (179)
452 cd03214 ABC_Iron-Siderophores_ 91.3 0.13 2.8E-06 48.8 2.3 27 191-217 23-49 (180)
453 TIGR00368 Mg chelatase-related 91.3 0.14 3E-06 56.6 2.9 34 185-218 203-236 (499)
454 PHA02624 large T antigen; Prov 91.3 0.19 4.1E-06 56.0 3.9 56 182-239 417-484 (647)
455 COG3638 ABC-type phosphate/pho 91.3 0.82 1.8E-05 45.1 7.8 93 446-546 29-129 (258)
456 cd03301 ABC_MalK_N The N-termi 91.3 0.13 2.7E-06 50.1 2.3 27 191-217 24-50 (213)
457 cd01876 YihA_EngB The YihA (En 91.3 0.12 2.6E-06 47.0 2.1 20 196-215 2-21 (170)
458 PLN02165 adenylate isopentenyl 91.3 0.14 3E-06 53.4 2.6 28 191-218 41-68 (334)
459 cd03229 ABC_Class3 This class 91.2 0.13 2.8E-06 48.6 2.3 28 190-217 23-50 (178)
460 TIGR02880 cbbX_cfxQ probable R 91.2 0.51 1.1E-05 48.3 6.8 26 446-471 57-82 (284)
461 cd01855 YqeH YqeH. YqeH is an 91.2 0.2 4.4E-06 47.7 3.6 27 190-216 124-150 (190)
462 cd04145 M_R_Ras_like M-Ras/R-R 91.2 0.16 3.4E-06 46.5 2.7 24 194-217 3-26 (164)
463 cd04123 Rab21 Rab21 subfamily. 91.2 0.13 2.9E-06 46.7 2.3 22 195-216 2-23 (162)
464 PRK11388 DNA-binding transcrip 91.2 0.2 4.4E-06 57.2 4.2 59 168-226 323-383 (638)
465 PRK08118 topology modulation p 91.2 0.35 7.5E-06 45.4 5.1 31 449-479 3-33 (167)
466 COG0703 AroK Shikimate kinase 91.2 0.16 3.6E-06 47.7 2.8 27 192-218 1-27 (172)
467 cd04107 Rab32_Rab38 Rab38/Rab3 91.2 0.15 3.3E-06 49.0 2.7 22 195-216 2-23 (201)
468 cd03247 ABCC_cytochrome_bd The 91.2 0.14 3E-06 48.4 2.4 27 191-217 26-52 (178)
469 cd04116 Rab9 Rab9 subfamily. 91.1 0.15 3.3E-06 47.1 2.7 23 194-216 6-28 (170)
470 cd03259 ABC_Carb_Solutes_like 91.1 0.13 2.9E-06 49.9 2.3 28 190-217 23-50 (213)
471 cd03293 ABC_NrtD_SsuB_transpor 91.1 0.13 2.7E-06 50.4 2.1 28 190-217 27-54 (220)
472 COG0378 HypB Ni2+-binding GTPa 91.1 0.14 3.1E-06 48.9 2.4 31 190-220 7-40 (202)
473 cd03262 ABC_HisP_GlnQ_permease 91.1 0.14 2.9E-06 49.8 2.3 27 191-217 24-50 (213)
474 cd03224 ABC_TM1139_LivF_branch 91.1 0.12 2.7E-06 50.5 2.0 27 190-216 23-49 (222)
475 PRK15177 Vi polysaccharide exp 91.1 0.14 3E-06 50.1 2.3 28 190-217 10-37 (213)
476 TIGR00176 mobB molybdopterin-g 91.1 0.12 2.7E-06 47.9 1.9 24 196-219 2-25 (155)
477 PRK13540 cytochrome c biogenes 91.1 0.14 3E-06 49.4 2.4 27 190-216 24-50 (200)
478 smart00487 DEXDc DEAD-like hel 91.1 0.25 5.4E-06 46.0 4.1 32 184-215 15-46 (201)
479 KOG3347|consensus 91.1 0.16 3.5E-06 46.4 2.5 23 195-217 9-31 (176)
480 PF00485 PRK: Phosphoribulokin 91.0 0.15 3.3E-06 48.9 2.6 24 196-219 2-25 (194)
481 cd03235 ABC_Metallic_Cations A 91.0 0.13 2.8E-06 50.0 2.1 27 190-216 22-48 (213)
482 COG1116 TauB ABC-type nitrate/ 91.0 0.075 1.6E-06 52.7 0.4 24 190-213 26-49 (248)
483 cd03268 ABC_BcrA_bacitracin_re 91.0 0.14 2.9E-06 49.7 2.2 27 191-217 24-50 (208)
484 cd03246 ABCC_Protease_Secretio 91.0 0.15 3.3E-06 47.9 2.5 27 191-217 26-52 (173)
485 cd03261 ABC_Org_Solvent_Resist 91.0 0.14 2.9E-06 50.7 2.3 28 190-217 23-50 (235)
486 PF01935 DUF87: Domain of unkn 91.0 0.14 3E-06 50.4 2.3 26 193-218 23-48 (229)
487 cd04106 Rab23_lke Rab23-like s 91.0 0.16 3.5E-06 46.4 2.6 22 195-216 2-23 (162)
488 PRK12723 flagellar biosynthesi 91.0 0.13 2.8E-06 55.0 2.1 25 193-217 174-198 (388)
489 cd01863 Rab18 Rab18 subfamily. 91.0 0.14 3E-06 46.8 2.2 22 195-216 2-23 (161)
490 TIGR03410 urea_trans_UrtE urea 91.0 0.14 3E-06 50.5 2.2 28 190-217 23-50 (230)
491 cd01858 NGP_1 NGP-1. Autoanti 91.0 0.17 3.7E-06 46.7 2.7 24 193-216 102-125 (157)
492 cd04135 Tc10 TC10 subfamily. 90.9 0.17 3.7E-06 46.9 2.8 22 195-216 2-23 (174)
493 PRK01184 hypothetical protein; 90.9 0.14 3E-06 48.6 2.2 22 195-217 3-24 (184)
494 KOG0737|consensus 90.9 0.12 2.6E-06 53.9 1.8 28 189-216 123-150 (386)
495 PF13521 AAA_28: AAA domain; P 90.9 0.11 2.4E-06 48.2 1.5 21 196-216 2-22 (163)
496 cd03223 ABCD_peroxisomal_ALDP 90.9 0.15 3.3E-06 47.7 2.3 29 190-218 24-52 (166)
497 PRK07261 topology modulation p 90.9 0.7 1.5E-05 43.5 6.9 30 449-478 2-31 (171)
498 PTZ00133 ADP-ribosylation fact 90.8 0.18 3.9E-06 47.8 2.9 24 192-215 16-39 (182)
499 PRK02496 adk adenylate kinase; 90.8 0.14 2.9E-06 48.7 2.0 23 195-217 3-25 (184)
500 KOG1942|consensus 90.8 0.2 4.3E-06 50.7 3.1 29 191-219 62-90 (456)
No 1
>KOG3595|consensus
Probab=100.00 E-value=1.7e-66 Score=621.43 Aligned_cols=442 Identities=33% Similarity=0.563 Sum_probs=399.2
Q ss_pred hhHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHhCCCCCCCCcccccccCcCCC
Q psy12736 55 FTEIVQLCQMLQASLDEANLGSMSPEELEAVFIQSVYASLGASLVAEAQTVFDAHVKNLTGFLNVVDSDDRLANYTQIPT 134 (567)
Q Consensus 55 ~~lv~s~~~ll~~ll~~~~~~~~~~~~~e~~FifsliWs~Gg~l~~~~R~~Fd~~lr~~~~~~~~~d~~~~~~~~~~~P~ 134 (567)
.+.+. .|.+.+ ..+++..|.||++|++||+++.++|.+|..|+++...
T Consensus 27 ~~~~~-~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 74 (1395)
T KOG3595|consen 27 STMIQ-VCELLD------------KSHLERLFLFALIWALGGDLDADSREKFREFLRRLIN------------------- 74 (1395)
T ss_pred hhHHH-HHHHHH------------HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-------------------
Confidence 55566 666655 3579999999999999999999999999999998652
Q ss_pred CCCCeeEEEEECCCCceeeCcccccceeecCCCCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 135 AESSWYHYTLDRSKNAWVPWRHLVRSYVHDGDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 135 ~~~~vfDy~~d~~~~~w~~W~~~v~~~~~~~~~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
++++||.+...+.|.+|.+.++ +...++.. +++|||.||+|+.++++.++..++|+++|||+|||||+++...+
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~ 148 (1395)
T KOG3595|consen 75 ---IIDLYYIDEEIGDWEPWIDKVP-FELLEDHE--DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSEL 148 (1395)
T ss_pred ---hhhheeeeeccccccchhhhCc-cccccccc--ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHH
Confidence 5678888888999999999999 76666655 99999999999999999999999999999999999999999999
Q ss_pred hccCCCcceeee------------------c-------CCCCCceEEEEe----ec------------------------
Q psy12736 215 RSLSPDKYLVIA------------------E-------LPPTPAKFHYIF----NL------------------------ 241 (567)
Q Consensus 215 ~~l~~~~~~~~~------------------e-------gPp~gkk~v~iF----Nl------------------------ 241 (567)
.+..+..+..+| + |||.+++++ +| |+
T Consensus 149 ~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~-~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~ 227 (1395)
T KOG3595|consen 149 RSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLV-LFVDDINMPALDKYGDQPPIELLRQMLEHGGF 227 (1395)
T ss_pred HhcccchheEEeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeE-EEEeccCCchhhhcCCccHHHHHHHHHHhcee
Confidence 987654422133 1 899999999 77 41
Q ss_pred -----------cch----------------h-hhhhccccccccccCCHHHHHHHHHHhhhhhhc--------------C
Q psy12736 242 -----------RDL----------------S-RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTIC--------------D 279 (567)
Q Consensus 242 -----------~D~----------------~-R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~~--------------~ 279 (567)
.|+ . ||.| ||.+++++.|+.+++.+||.+++...+. .
T Consensus 228 ~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r-~f~~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~ 306 (1395)
T KOG3595|consen 228 YDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR-HFLIVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNA 306 (1395)
T ss_pred ecccccceeEEeeeEEEeecCCCCCccCcccHHHHH-HeeeEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHH
Confidence 111 1 9999 9999999999999999999999885421 2
Q ss_pred hHHHHHHHHHhCCCCCCccccccChhhHHHHHhhhhcccccccCCHHHHHHHHhhhhchhhccccCChhhHHHHHHHHHH
Q psy12736 280 RLNTDELVIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIAD 359 (567)
Q Consensus 280 ~i~~y~~i~~~llptp~k~HY~FnlRDlsrv~qGi~~~~~~~~~~~~~l~rLw~hE~~RVF~DRLi~~eDr~~f~~~l~~ 359 (567)
++.+|...+.+++|||.++||+|||||++||++|++.+.+....+...++++|.||+.|||.|||++++|++||++.+.+
T Consensus 307 ~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~ 386 (1395)
T KOG3595|consen 307 SVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQE 386 (1395)
T ss_pred HHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999998877888999999999999999999999999999999999999
Q ss_pred HHHhhCCcchhhhccCCceeccccccccCCCCcccccccChHHHHHHHHHHHHHHh-hhhcccCcceEEecHHHHHHHHH
Q psy12736 360 SVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYN-ESAGAKARLDLVLFEDAREHLTR 438 (567)
Q Consensus 360 ~~~~~f~~~~~~~~~~~llf~d~~~~~~~~~~~~Y~~v~d~~~l~~~~~~~l~~yn-~~~~~~~~~~lvlf~dai~hi~r 438 (567)
.+...|+... ...|++||++.... . +.|.++.+++.+...+...+..|| .. ...|++|+|.++++|++|
T Consensus 387 ~~~~~~~~~~---~~~~~~~~~~~~~~---~-~~y~~~~~~~~l~~~~~~~l~~~~~~~---~~~~~lvlf~~~~~h~~r 456 (1395)
T KOG3595|consen 387 VLLKLFEADS---LQMPLLYGDFRSES---H-KIYEEVLSVELLRGVLEAYLKQFNIEE---IRPMHLVLFRDAIEHVLR 456 (1395)
T ss_pred HHHHHhhhhh---hcCCceeeeccccc---c-cccCchHhHHHHHHHHHHHHHHHhhhc---cCCCceeeeHHHhhhhhh
Confidence 9999987654 45689999998642 2 899999999999999999999999 43 789999999999999999
Q ss_pred HHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccc
Q psy12736 439 IHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVE 518 (567)
Q Consensus 439 i~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~ 518 (567)
|+|++++|+||++|+|++|+||+|++|+++|++++.+||++++++|+..+|++|||.+++.||.+|++++|+++|+++.+
T Consensus 457 i~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~~~~~~~dl~~~~r~~g~~~~~~~f~~~~~~i~~ 536 (1395)
T KOG3595|consen 457 IDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYNIEDFREDLKAILRKAGLKNKETVFILTDSQIKD 536 (1395)
T ss_pred hHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCcHHHHHHHHHHHHHHhccCCCceEEeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhh-hccCCccccCcchhHHHHHH
Q psy12736 519 EGYQVFTI-QLSRGYNEASFKEDLKSLYN 546 (567)
Q Consensus 519 e~fle~in-lL~~Gevp~Lf~~eE~~~i~ 546 (567)
|+|+|+|| ||++||+|+||++||++.+.
T Consensus 537 e~fle~ln~ll~~gevp~lf~~de~~~~~ 565 (1395)
T KOG3595|consen 537 ESFLEDLNNLLASGEVPNLFTGDELDEIK 565 (1395)
T ss_pred HHHHHHHHHHHhCCCCCCccchHHHHHHH
Confidence 99999999 99999999999999999954
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.6e-44 Score=399.35 Aligned_cols=440 Identities=14% Similarity=0.105 Sum_probs=351.7
Q ss_pred HHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHhCCCCCCCCcccccccCcCCC----CCCCeeEEEEECCCCceeeCc
Q psy12736 80 EELEAVFIQSVYASLGASLVAEAQTVFDAHVKNLTGFLNVVDSDDRLANYTQIPT----AESSWYHYTLDRSKNAWVPWR 155 (567)
Q Consensus 80 ~~~e~~FifsliWs~Gg~l~~~~R~~Fd~~lr~~~~~~~~~d~~~~~~~~~~~P~----~~~~vfDy~~d~~~~~w~~W~ 155 (567)
..+....-.++.|.+.|.-+.++|++|-.|+..-+... +|. +.-.+.++-++.....| .
T Consensus 1393 ~~mk~~I~~vL~~~~~gD~~~es~~rf~~~~~~~~~~d--------------l~e~sdye~~~i~~f~is~~~~~~---~ 1455 (3164)
T COG5245 1393 VEMKRGINDVLKLRIFGDKCRESTPRFYLISDGDLIKD--------------LNERSDYEEMLIMMFNISAVITNN---G 1455 (3164)
T ss_pred HHHHHHHHHHHHHHHhcCcccccchhHHHhhhhhhhhc--------------cchhhhhHHHHHhhcccceEeecc---c
Confidence 45777778888999999999999999999988765421 221 01233344444433333 3
Q ss_pred ccccceeec-CCCC-CccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcceeee-------
Q psy12736 156 HLVRSYVHD-GDKS-FGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA------- 226 (567)
Q Consensus 156 ~~v~~~~~~-~~~~-~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~------- 226 (567)
+ ++.++.. .... -.++++||.||+++.-+..-+++.++.+++|||||+|||+++...|++-...++..+|
T Consensus 1456 ~-Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T 1534 (3164)
T COG5245 1456 S-IAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT 1534 (3164)
T ss_pred c-cCCceechhhhcccCCeecccccchhHHHHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC
Confidence 2 2334332 2233 3489999999999999999999999999999999999999999998876555555554
Q ss_pred -------c--------------CCCCC-ceEEEEe----ec---------------------------------------
Q psy12736 227 -------E--------------LPPTP-AKFHYIF----NL--------------------------------------- 241 (567)
Q Consensus 227 -------e--------------gPp~g-kk~v~iF----Nl--------------------------------------- 241 (567)
| .|.+- |.+| +| |+
T Consensus 1535 ~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV-LFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~ 1613 (3164)
T COG5245 1535 PSKLSVLERETEYYPNTGVVRLYPKPVVKDLV-LFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGII 1613 (3164)
T ss_pred HHHHHHHHhhceeeccCCeEEEccCcchhheE-EEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceE
Confidence 1 24333 3444 66 41
Q ss_pred --------cchh------hhhhccccccccccCCHHHHHHHHHHhhhhh--------------hcChHHHHHHHHHhCCC
Q psy12736 242 --------RDLS------RIIQGLTATEKIIFNTKEMFVRAWRNEFTRT--------------ICDRLNTDELVIAELPP 293 (567)
Q Consensus 242 --------~D~~------R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~--------------~~~~i~~y~~i~~~llp 293 (567)
.|.+ ||+| |-.++++.+|+-.||.+||..++... +.+++++|+..+.++.
T Consensus 1614 l~Gacnp~td~gRv~~~eRf~r-~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k- 1691 (3164)
T COG5245 1614 LYGACNPGTDEGRVKYYERFIR-KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTK- 1691 (3164)
T ss_pred EEccCCCCCCcccCccHHHHhc-CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 1222 9999 99999999999999999999888732 2344899999888764
Q ss_pred CCCccccccChhhHHHHHhhhhccccccc-CCHHHHHHHHhhhhchhhccccCChhhHHHHHHHHHHHHHhhCCc-chhh
Q psy12736 294 TPAKFHYIFNLRDLSRIIQGLTATEKIIF-NTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQ-DVNV 371 (567)
Q Consensus 294 tp~k~HY~FnlRDlsrv~qGi~~~~~~~~-~~~~~l~rLw~hE~~RVF~DRLi~~eDr~~f~~~l~~~~~~~f~~-~~~~ 371 (567)
+-.+.||.|++|||+||+.|+..+..... ++...++++|+||++|++.|||+.+.+..|+.+.+.+...+.++. ...+
T Consensus 1692 ~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~ 1771 (3164)
T COG5245 1692 FFLQMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGH 1771 (3164)
T ss_pred hhcccccccChHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcc
Confidence 33578999999999999999987544333 355689999999999999999999999999999999999999884 3334
Q ss_pred hccCCceeccccccccCCCCcccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceE
Q psy12736 372 VMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCM 451 (567)
Q Consensus 372 ~~~~~llf~d~~~~~~~~~~~~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~L 451 (567)
+....++|++...- ... ..+...+...+++.-+.|..+ +....+|.+++|+.|+.|+.|+|.+.+||++
T Consensus 1772 i~e~~I~fS~Il~~-------g~~-~l~k~dl~~fvEe~~K~F~ss---hl~v~~V~~~~~l~HiLr~~R~l~~vggh~~ 1840 (3164)
T COG5245 1772 IGEAEITFSMILFF-------GMA-CLLKKDLAVFVEEVRKIFGSS---HLDVEAVAYKDALLHILRSRRGLLVVGGHGV 1840 (3164)
T ss_pred cchhhhhHHHHHhc-------cHH-HHhhhhHHHHHHHHHHHhccc---CCCCceeeeHHHHHHHHHHHHHHHHhccchh
Confidence 44445666654321 011 235556777788888888876 7888999999999999999999999999999
Q ss_pred EeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC
Q psy12736 452 VVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR 530 (567)
Q Consensus 452 LvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~ 530 (567)
|.|+.|.|++.+++++||+++.+++||..++.|...||++-||.+...||+.|-..|+++.|+.+..++|||+.| ||++
T Consensus 1841 l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~es~fLe~~N~LL~n 1920 (3164)
T COG5245 1841 LKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFLEDFNPLLDN 1920 (3164)
T ss_pred hhhhhhhhhHHHHHHHHHhCccchhhhhcccccchhhHHHHHHHHHHhccccCCceEEEEecCCccchHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccccCcchhHHHHHHHhhccc
Q psy12736 531 GYNEASFKEDLKSLYNLLGVKN 552 (567)
Q Consensus 531 Gevp~Lf~~eE~~~i~~~~~~~ 552 (567)
.++|+||+++|.+.|. .-+|.
T Consensus 1921 ~~~~~lf~gne~~~I~-~nlr~ 1941 (3164)
T COG5245 1921 NRFLCLFSGNERIRIP-ENLRF 1941 (3164)
T ss_pred cccchhccchhHHHHH-HHHHh
Confidence 9999999999999997 55543
No 3
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=6.9e-42 Score=343.30 Aligned_cols=145 Identities=39% Similarity=0.652 Sum_probs=122.3
Q ss_pred HhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHH
Q psy12736 414 YNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDL 493 (567)
Q Consensus 414 yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edL 493 (567)
||+. +.+|+||+|++|++||+||+|||++|+||+||||++||||+|++||||||+++++++|+++++|+.++|++||
T Consensus 1 yN~~---n~~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 1 YNES---NTKMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp ----------------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred CCcc---ccccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 7877 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccccCcchhHHHHHHHhhccccceeeeeecc
Q psy12736 494 KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 562 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~~~~ 562 (567)
|+++++||++|+++||+++|+|+.+++|||+|| ||++|||||||++||++.|. +.+|++|+..++.++
T Consensus 78 k~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~-~~l~~~~~~~~~~~~ 146 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNII-SSLREEAKAEGISDS 146 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHH-HHHHHHHHHCT--SS
T ss_pred HHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHH-HHhHHHHHHcCCCCc
Confidence 999999999999999999999999999999999 99999999999999999998 999999988776543
No 4
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=8.4e-41 Score=337.58 Aligned_cols=173 Identities=35% Similarity=0.610 Sum_probs=136.4
Q ss_pred eeecCCCCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcceee--e------------
Q psy12736 161 YVHDGDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVI--A------------ 226 (567)
Q Consensus 161 ~~~~~~~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~--~------------ 226 (567)
|++++++++++++|||+||+|+.|+++.|+++++||||+||+|||||++++++|++++++.|... +
T Consensus 1 ~~~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~ 80 (272)
T PF12775_consen 1 FEYDPEMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQK 80 (272)
T ss_dssp ------------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHH
T ss_pred CCcccccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999988876532 2
Q ss_pred --c-----------CCCCCceEEEEe----e-----------------------------------ccchh---------
Q psy12736 227 --E-----------LPPTPAKFHYIF----N-----------------------------------LRDLS--------- 245 (567)
Q Consensus 227 --e-----------gPp~gkk~v~iF----N-----------------------------------l~D~~--------- 245 (567)
| |||.||+++ +| | +.|++
T Consensus 81 ~ie~~l~k~~~~~~gP~~~k~lv-~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~ 159 (272)
T PF12775_consen 81 IIESKLEKRRGRVYGPPGGKKLV-LFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG 159 (272)
T ss_dssp CCCTTECECTTEEEEEESSSEEE-EEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT
T ss_pred HHhhcEEcCCCCCCCCCCCcEEE-EEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC
Confidence 1 999999999 77 4 12221
Q ss_pred -------hhhhccccccccccCCHHHHHHHHHHhhhhhh-----------------cChHHHHHHHHHhCCCCCCccccc
Q psy12736 246 -------RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTI-----------------CDRLNTDELVIAELPPTPAKFHYI 301 (567)
Q Consensus 246 -------R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~-----------------~~~i~~y~~i~~~llptp~k~HY~ 301 (567)
||+| ||+++++++|++++|.+||++++...+ .+++++|++++++|+|||.|+||+
T Consensus 160 Gr~~is~R~~r-~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~ 238 (272)
T PF12775_consen 160 GRNPISPRFLR-HFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYT 238 (272)
T ss_dssp T--SHHHHHHT-TEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTT
T ss_pred CCCCCChHHhh-heEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceee
Confidence 9999 999999999999999999999988432 123899999999999999999999
Q ss_pred cChhhHHHHHhhhhcccccccCCHHHHHHHHhhh
Q psy12736 302 FNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNE 335 (567)
Q Consensus 302 FnlRDlsrv~qGi~~~~~~~~~~~~~l~rLw~hE 335 (567)
|||||++||+||++++.++.+.+...++|||.||
T Consensus 239 FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 239 FNLRDLSRVFQGILLASPESIKTKESLLRLWVHE 272 (272)
T ss_dssp SHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence 9999999999999999999999999999999999
No 5
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.04 E-value=5.8e-09 Score=120.48 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=125.1
Q ss_pred hhhhccccccccccCCHHHHHHHHHHhhhhhhcC----hHHHH----HHHHHhCCCCCCccccccChhhHHHHHhhhhcc
Q psy12736 246 RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICD----RLNTD----ELVIAELPPTPAKFHYIFNLRDLSRIIQGLTAT 317 (567)
Q Consensus 246 R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~~~----~i~~y----~~i~~~llptp~k~HY~FnlRDlsrv~qGi~~~ 317 (567)
-|+. +|++++++..+.+++..|-.+...++-.| .|.+. .++.+..+-....+.+.||+||--||.+-+-++
T Consensus 1677 SF~n-RFsvV~~d~lt~dDi~~Ia~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~ 1755 (4600)
T COG5271 1677 SFLN-RFSVVKMDGLTTDDITHIANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQV 1755 (4600)
T ss_pred HHhh-hhheEEecccccchHHHHHHhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhcc
Confidence 5677 89999999999999999999887643221 13333 445555555567889999999999999987776
Q ss_pred cccccCCHHHHHHHHhhhhchhhccccCChhhHHHHHHHHHHHHHhhCCcchhhhccCCceec---cccccccC----CC
Q psy12736 318 EKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQDVNVVMRDPLLFG---DFRNALKE----TE 390 (567)
Q Consensus 318 ~~~~~~~~~~l~rLw~hE~~RVF~DRLi~~eDr~~f~~~l~~~~~~~f~~~~~~~~~~~llf~---d~~~~~~~----~~ 390 (567)
..-..-++.+++..-+ -.|+.+-+||..-.+++++++.++-+.. +.|+ ++..-... ..
T Consensus 1756 ~~~edvd~~dfid~~V-------~~r~rtv~dr~rt~~l~~evfg~~~~r~--------~~f~ls~~~~kv~~sv~vr~~ 1820 (4600)
T COG5271 1756 GTLEDVDTSDFIDESV-------VRRMRTVEDRVRTCELFKEVFGDYEPRT--------IGFSLSSQCFKVGHSVTVRMK 1820 (4600)
T ss_pred CccccCCHHHHHHHHH-------HHHhhhHhhhhHHHHHHHHHhcccCccc--------ccccchhhHhhcCceEEEecc
Confidence 5444445666665433 2466677888888888888776332211 1111 11100000 00
Q ss_pred CcccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHH
Q psy12736 391 PRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 391 ~~~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i 470 (567)
.|-|. +. -++++..--+.-+..+-|.+.+ .-.++|||++|+||+++.|+.|.|
T Consensus 1821 err~~-l~-------------------------~~~~~l~sql~vlEsV~~cIn~-nwPlIlvG~t~~GKt~~lRflasI 1873 (4600)
T COG5271 1821 ERRPR-LD-------------------------DSFVLLHSQLQVLESVMRCINM-NWPLILVGDTGVGKTSLLRFLASI 1873 (4600)
T ss_pred ccCCC-cc-------------------------cchhhhhhhhHHHHHHHHHHhc-CCCEEEEcCCCCchHHHHHHHHHH
Confidence 01111 00 0122222223333344566665 667899999999999999999999
Q ss_pred cCCeEEEEEecCCCCh
Q psy12736 471 AGYQVFTIQLSRGYNE 486 (567)
Q Consensus 471 ~~~~~~~i~~~k~y~~ 486 (567)
.|.++-...+.++.+.
T Consensus 1874 ~G~~~~~f~~nsDtD~ 1889 (4600)
T COG5271 1874 FGQEMTLFNCNSDTDV 1889 (4600)
T ss_pred hcccceEEeccCCchH
Confidence 9998877777765543
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.85 E-value=2.3e-07 Score=106.96 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCCh----hhH---------
Q psy12736 430 EDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNE----ASF--------- 489 (567)
Q Consensus 430 ~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~----~~f--------- 489 (567)
++|++.+++.-+..+ .|.|+.||+|++|+||+.+++..|...+..+..+..+. |.. ...
T Consensus 460 ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se-~~~~~~~~~lig~~~gyvg 538 (731)
T TIGR02639 460 DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSE-YMEKHTVSRLIGAPPGYVG 538 (731)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCch-hhhcccHHHHhcCCCCCcc
Confidence 466676666544432 47889999999999999999999999898888886542 100 000
Q ss_pred ---HHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccc
Q psy12736 490 ---KEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE 534 (567)
Q Consensus 490 ---~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp 534 (567)
-..|...++ .+...|+++++-+-..+.....+- +|..|.+.
T Consensus 539 ~~~~~~l~~~~~----~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~ 583 (731)
T TIGR02639 539 FEQGGLLTEAVR----KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLT 583 (731)
T ss_pred cchhhHHHHHHH----hCCCeEEEEechhhcCHHHHHHHHHhhccCeee
Confidence 011222222 233468888887777787777777 77777544
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.81 E-value=2.5e-07 Score=105.92 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=68.1
Q ss_pred EecHHHHHHHHHHHHHH-------hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHH------
Q psy12736 427 VLFEDAREHLTRIHRAL-------RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDL------ 493 (567)
Q Consensus 427 vlf~dai~hi~ri~RvL-------~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edL------ 493 (567)
+=-++|++.+++.-+.. +.|.|++||+|++|+||+.+++..|-..+..++.+..+. |....--..|
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se-~~~~~~~~~LiG~~~g 539 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE-YMERHTVSRLIGAPPG 539 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechh-hcccccHHHHcCCCCC
Confidence 33457777777665543 357899999999999999999988888888888876542 1110000111
Q ss_pred ------HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCcc
Q psy12736 494 ------KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYN 533 (567)
Q Consensus 494 ------k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gev 533 (567)
...+..+-..+...|+++++-+-..+.....+- +|..|.+
T Consensus 540 yvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~l 586 (758)
T PRK11034 540 YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTL 586 (758)
T ss_pred cccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCee
Confidence 112222222233468888887777777777666 7777754
No 8
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=110.08 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=89.2
Q ss_pred cceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC--------------CChhh
Q psy12736 423 RLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG--------------YNEAS 488 (567)
Q Consensus 423 ~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~--------------y~~~~ 488 (567)
.-+.++.+.+-.+..++.|.-+..+=.+|+.|+..|||+|.....|...|.++++|+-+.. -|.-.
T Consensus 864 q~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~ls 943 (4600)
T COG5271 864 QEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLS 943 (4600)
T ss_pred cceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCcee
Confidence 4468888888888999999988878889999999999999999999999999999974432 23345
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccccCcchhHHHHH
Q psy12736 489 FKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNEASFKEDLKSLY 545 (567)
Q Consensus 489 f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp~Lf~~eE~~~i 545 (567)
|+|. ++-.|- .+...+++++-++.....||.+| ||. +-..||-+|-.+-+
T Consensus 944 FkEG---vLVeAl--R~GyWIVLDELNLApTDVLEaLNRLLD--DNRelfIPETqevV 994 (4600)
T COG5271 944 FKEG---VLVEAL--RRGYWIVLDELNLAPTDVLEALNRLLD--DNRELFIPETQEVV 994 (4600)
T ss_pred eehh---HHHHHH--hcCcEEEeeccccCcHHHHHHHHHhhc--cccceecCCcceee
Confidence 6663 444443 34466777899999999999999 997 44456666554433
No 9
>KOG0733|consensus
Probab=98.61 E-value=7.9e-07 Score=95.92 Aligned_cols=64 Identities=17% Similarity=0.350 Sum_probs=51.8
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEEE---e-cCCCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ---L-SRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~---~-~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
+-+||.|++|+||+-|+|-+|.-++.++..|. + .+--|.+| ..+|.++.+|- .+.|+|+.|++-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE--rAVR~vFqRAR-~saPCVIFFDEi 613 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE--RAVRQVFQRAR-ASAPCVIFFDEI 613 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH--HHHHHHHHHhh-cCCCeEEEecch
Confidence 45899999999999999999999999998884 2 23334444 57899999995 578999999753
No 10
>KOG0736|consensus
Probab=98.48 E-value=4.4e-06 Score=92.48 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=53.9
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE---ec-CCCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ---LS-RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~---~~-k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.+|+-+||-|++|+||+-++|-.|-=+..+++++. +- .--|.+| +.+|+++.+|- ...|+|+.|++-
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE--~NVR~VFerAR-~A~PCVIFFDEL 773 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSE--ENVREVFERAR-SAAPCVIFFDEL 773 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchH--HHHHHHHHHhh-ccCCeEEEeccc
Confidence 35888999999999999999999988888888874 22 2224443 78999999994 679999999763
No 11
>KOG0735|consensus
Probab=98.34 E-value=2.1e-05 Score=86.51 Aligned_cols=100 Identities=17% Similarity=0.318 Sum_probs=67.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcC
Q psy12736 393 YYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAG 472 (567)
Q Consensus 393 ~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~ 472 (567)
-++++.-+...++++++.++--. +- +. |-.-+ -||. +..+||-|++|+||+-|+-.+|.-++
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~-------ky-----p~----if~~~-plr~-~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPS-------KY-----PQ----IFANC-PLRL-RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred CceecccHHHHHHHHHHHHhccc-------cc-----hH----HHhhC-Cccc-ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 35666777777777777654110 00 00 00001 1234 55689999999999999998888888
Q ss_pred CeEEEEE----ecCCCChhhHHHHHHHHHHHhccCCCcEEEEEec
Q psy12736 473 YQVFTIQ----LSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 473 ~~~~~i~----~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d 513 (567)
..+..+. ++|-.|.+| +.+|.++.+|- ..+|+++.|++
T Consensus 727 ~~fisvKGPElL~KyIGaSE--q~vR~lF~rA~-~a~PCiLFFDE 768 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASE--QNVRDLFERAQ-SAKPCILFFDE 768 (952)
T ss_pred eeEEEecCHHHHHHHhcccH--HHHHHHHHHhh-ccCCeEEEecc
Confidence 8888774 344446654 78999999885 47899999975
No 12
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.30 E-value=2.3e-05 Score=90.75 Aligned_cols=68 Identities=15% Similarity=0.382 Sum_probs=51.8
Q ss_pred HhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 443 LRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 443 L~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
++.|+| +||.|++||||+++++..|..++..++.+..+ +-.+.++ ..++.++..|. ...|.+++++|-
T Consensus 484 ~~~~~g-iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese--~~i~~~f~~A~-~~~p~iifiDEi 555 (733)
T TIGR01243 484 IRPPKG-VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE--KAIREIFRKAR-QAAPAIIFFDEI 555 (733)
T ss_pred CCCCce-EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH--HHHHHHHHHHH-hcCCEEEEEECh
Confidence 344554 89999999999999999999999999988643 3334432 46788888774 567888888874
No 13
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.15 E-value=0.00018 Score=84.16 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred EEecHHHHHHHHHHHH---H-H---hcCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCC---hhhH---
Q psy12736 426 LVLFEDAREHLTRIHR---A-L---RLSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYN---EASF--- 489 (567)
Q Consensus 426 lvlf~dai~hi~ri~R---v-L---~~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~---~~~f--- 489 (567)
++=-++|++.|++.-+ + | +.|.|+.||+|++|+||+++++..|... +..+..+..+.-.+ .+.+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~ 590 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS 590 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence 4444677777766433 2 2 2356788999999999999998776543 34566666542110 0000
Q ss_pred ---------HHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCcc
Q psy12736 490 ---------KEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYN 533 (567)
Q Consensus 490 ---------~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gev 533 (567)
-..|...++. +-..|+++++-+-.++.+...+= +|..|.+
T Consensus 591 ~~gyvg~~~~~~l~~~~~~----~p~~VvllDeieka~~~v~~~Llq~le~g~~ 640 (821)
T CHL00095 591 PPGYVGYNEGGQLTEAVRK----KPYTVVLFDEIEKAHPDIFNLLLQILDDGRL 640 (821)
T ss_pred CCcccCcCccchHHHHHHh----CCCeEEEECChhhCCHHHHHHHHHHhccCce
Confidence 0012222222 22368888887777777777666 7777754
No 14
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.13 E-value=0.00024 Score=83.20 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=63.4
Q ss_pred eEEecHHHHHHHHHHHHHH-------hcCCCceEEeccCCCcHhHHHHHHHHHc-C--CeEEEEEecCCCChhhHHHH--
Q psy12736 425 DLVLFEDAREHLTRIHRAL-------RLSRGHCMVVGVEGGGKRSLVRLASFAA-G--YQVFTIQLSRGYNEASFKED-- 492 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL-------~~p~Gh~LLvG~~GsGr~sl~rlaa~i~-~--~~~~~i~~~k~y~~~~f~ed-- 492 (567)
.++=-++|++.|++..+.. +.|.|..||+|++|+||+.+++..|... + ..+..+.++ +|.+.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dms------e~~~~~~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMS------EFQEAHT 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHH------Hhhhhhh
Confidence 4555678888888766553 2466788999999999999998665544 2 245555432 22111
Q ss_pred H---------------HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 493 L---------------KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 493 L---------------k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
. ...+..+-.++...|+++++-.-.++.+.+.+= +|..|.
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred hccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 0 011222322345577888887766777777666 776665
No 15
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.09 E-value=1.6e-05 Score=78.67 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=37.6
Q ss_pred cccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 171 DILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 171 ~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-+|-|+-|-|.-.-+..-+..+....+.||+|||||.+++++-+.+-
T Consensus 10 ~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 10 PRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp ------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred CCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 348999999999888888889999999999999999999999877653
No 16
>KOG0730|consensus
Probab=98.00 E-value=0.00029 Score=77.48 Aligned_cols=99 Identities=14% Similarity=0.247 Sum_probs=74.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCC
Q psy12736 394 YEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGY 473 (567)
Q Consensus 394 Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~ 473 (567)
+..+.-+++++..+++... ..++|-..-.|.=-.|.--+||-|++|+||++++|-.|-.+++
T Consensus 433 W~dIGGlE~lK~elq~~V~------------------~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVE------------------WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred hhhccCHHHHHHHHHHHHh------------------hhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 4455667777777766543 4466666777764445455999999999999999999999999
Q ss_pred eEEEE----EecCCCChhhHHHHHHHHHHHhccCCCcEEEEEec
Q psy12736 474 QVFTI----QLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 474 ~~~~i----~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d 513 (567)
++.+| -.++-||.+| ..++.++.+|- +..|.++.|++
T Consensus 495 nFlsvkgpEL~sk~vGeSE--r~ir~iF~kAR-~~aP~IiFfDE 535 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESE--RAIREVFRKAR-QVAPCIIFFDE 535 (693)
T ss_pred CeeeccCHHHHHHhcCchH--HHHHHHHHHHh-hcCCeEEehhh
Confidence 99999 3677777775 67999999984 56676666654
No 17
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0016 Score=74.08 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=62.6
Q ss_pred EEecHHHHHHHHHHHHHH-------hcCCCceEEeccCCCcHhHHHH-HHHHHcC--CeEEEEEecCCCChhhHHHHHH-
Q psy12736 426 LVLFEDAREHLTRIHRAL-------RLSRGHCMVVGVEGGGKRSLVR-LASFAAG--YQVFTIQLSRGYNEASFKEDLK- 494 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL-------~~p~Gh~LLvG~~GsGr~sl~r-laa~i~~--~~~~~i~~~k~y~~~~f~edLk- 494 (567)
++==++|++.|++.-|-- +.|-|..|++|++|+||+.|++ ||.++-| -.+.++ +++||.|---
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~------DMSEy~EkHsV 566 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI------DMSEYMEKHSV 566 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee------chHHHHHHHHH
Confidence 444468888888654442 3567899999999999999987 5666665 345555 4666655311
Q ss_pred ----------------HHHHHhccCCCc-EEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 495 ----------------SLYNLLGVKNQA-TVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 495 ----------------~~~~~ag~~~~~-~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
..|..| +..+| .|+|+++-.-.++..+.-+= +|-.|.
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEa-VRr~PySViLlDEIEKAHpdV~nilLQVlDdGr 621 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEA-VRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGR 621 (786)
T ss_pred HHHhCCCCCCceeccccchhHh-hhcCCCeEEEechhhhcCHHHHHHHHHHhcCCe
Confidence 122223 34566 47788776666666655444 444443
No 18
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=0.0032 Score=74.19 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=61.7
Q ss_pred EEecHHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHH--
Q psy12736 426 LVLFEDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDL-- 493 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edL-- 493 (567)
++=-+.|++.+++..+-.+ .|.|..||+|++|+||+.+++..|... +..+..+..+. |........|
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~-~~~~~~~~~l~g 645 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE-YMEKHSVARLIG 645 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh-hcccchHHHhcC
Confidence 4445677777776555432 367889999999999999999877643 45566666542 1111100000
Q ss_pred ----------HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 494 ----------KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 494 ----------k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
...+..+-......|+++++-+-.++.....+= +|..|.
T Consensus 646 ~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~ 695 (852)
T TIGR03346 646 APPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGR 695 (852)
T ss_pred CCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCc
Confidence 011111111122347888887766776666665 666664
No 19
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.62 E-value=6.5e-05 Score=68.07 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=62.4
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHH-hccC-----------CCcEEEEEecCcc
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNL-LGVK-----------NQATVFLFTAAEI 516 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~-ag~~-----------~~~~vfl~~d~qi 516 (567)
|+||+|++|+||+++++..|...+.+++.+.++...+..++. ..+.. .|.. .++.++++++-+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~----g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI----GSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH----CEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce----eeeeecccccccccccccccccceeEEEECCccc
Confidence 689999999999999999999999999999999887765332 11110 1110 1688899999998
Q ss_pred cchhhhHHhh-hccCCccc
Q psy12736 517 VEEGYQVFTI-QLSRGYNE 534 (567)
Q Consensus 517 ~~e~fle~in-lL~~Gevp 534 (567)
.++..++.++ +|..+.+-
T Consensus 77 a~~~v~~~L~~ll~~~~~~ 95 (139)
T PF07728_consen 77 APPEVLESLLSLLEERRIQ 95 (139)
T ss_dssp --HHHHHTTHHHHSSSEEE
T ss_pred CCHHHHHHHHHHHhhCccc
Confidence 8999999999 99988754
No 20
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.58 E-value=0.00022 Score=63.26 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=56.3
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCC--ChhhHHHHHHHHHHHhccCCCcEEEEEecCcccch
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGY--NEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEE 519 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y--~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e 519 (567)
+||.|++|+||+++++..|...+..++++....-. ...+-...+++++.++...++|.|++++|-+...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccc
Confidence 58999999999999999999999999999765432 33456678889998886555689999998766544
No 21
>KOG0741|consensus
Probab=97.33 E-value=0.0019 Score=69.35 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhcC----CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE---ecCCCChhhHHHHHHHHHHHhccC
Q psy12736 431 DAREHLTRIHRALRLS----RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ---LSRGYNEASFKEDLKSLYNLLGVK 503 (567)
Q Consensus 431 dai~hi~ri~RvL~~p----~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~---~~k~y~~~~f~edLk~~~~~ag~~ 503 (567)
..++|=....+-.+.| --.+||-|++||||++|+--+|..+++.++.|- -.-+++.++=-..+|+++..|= +
T Consensus 518 ~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY-k 596 (744)
T KOG0741|consen 518 RILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY-K 596 (744)
T ss_pred HHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh-c
Confidence 3344444444444443 346799999999999999999999999888762 2234555555567888888873 3
Q ss_pred CCcEEEEEec
Q psy12736 504 NQATVFLFTA 513 (567)
Q Consensus 504 ~~~~vfl~~d 513 (567)
..-.|++++|
T Consensus 597 S~lsiivvDd 606 (744)
T KOG0741|consen 597 SPLSIIVVDD 606 (744)
T ss_pred CcceEEEEcc
Confidence 4444555544
No 22
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.20 E-value=0.0018 Score=65.58 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHH-------------H--------
Q psy12736 436 LTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDL-------------K-------- 494 (567)
Q Consensus 436 i~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edL-------------k-------- 494 (567)
+.|+-+.+.. ++|+||.|++|+||+++++..|...|.++..++.+...+..++.... +
T Consensus 11 ~~~~l~~l~~-g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T TIGR02640 11 TSRALRYLKS-GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI 89 (262)
T ss_pred HHHHHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc
Confidence 3345555554 77999999999999999999998889999999776654433321110 0
Q ss_pred -------HHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 495 -------SLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 495 -------~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
..+..|-. +..++++++-+-.+++....++ +|..|.
T Consensus 90 ~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~ 133 (262)
T TIGR02640 90 VRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGV 133 (262)
T ss_pred cceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCe
Confidence 11122211 2357888888888888988888 888775
No 23
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0015 Score=70.95 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=73.7
Q ss_pred HHHHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCCe------------------------EEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGYQ------------------------VFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~~------------------------~~~i~~~k~y~~~~f~ed 492 (567)
+.+.+...+ +|+ |+.|+.|+||+|++|..|...+++ +++|....+-+..+.|+-
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL 109 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIREL 109 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHH
Confidence 445555544 674 999999999999999998877663 555554444555544432
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
...+ ..+...++..|+++++.+.......+.+= .|.. +.+-=++...|..+|. ..++..+..+-+
T Consensus 110 ~e~l-~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~-~TI~SRCq~~~f 177 (484)
T PRK14956 110 RDNV-KFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP-ETILSRCQDFIF 177 (484)
T ss_pred HHHH-HhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc-HHHHhhhheeee
Confidence 2222 22334567788999998887764333222 2322 2333356677777876 777777655544
No 24
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.12 E-value=0.0034 Score=55.88 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHH----HHHHHHhccCCCcEEEEEecCccc-
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDL----KSLYNLLGVKNQATVFLFTAAEIV- 517 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edL----k~~~~~ag~~~~~~vfl~~d~qi~- 517 (567)
+.+++++.|++|+||+++++.++... +..++.+..+..+......... ...........++.+++++|.+-.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 56789999999999999999998876 7777777766544432222211 122233344567889999998743
Q ss_pred ---chhhhHHhh
Q psy12736 518 ---EEGYQVFTI 526 (567)
Q Consensus 518 ---~e~fle~in 526 (567)
.+.+++.+.
T Consensus 98 ~~~~~~~~~~i~ 109 (151)
T cd00009 98 RGAQNALLRVLE 109 (151)
T ss_pred HHHHHHHHHHHH
Confidence 334444445
No 25
>PRK04195 replication factor C large subunit; Provisional
Probab=97.11 E-value=0.0024 Score=70.39 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=70.1
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHh----ccCC-CcEEEEEecCcccch-
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLL----GVKN-QATVFLFTAAEIVEE- 519 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~a----g~~~-~~~vfl~~d~qi~~e- 519 (567)
|..++||.|++|+||+++++..|.-.++++.+++.+..-+.. .++.+...+ .+.+ .+.+++++|.+-...
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~ 113 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTAD----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGN 113 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHH----HHHHHHHHhhccCcccCCCCeEEEEecCcccccc
Confidence 456789999999999999999999999999888776433333 344443333 2222 567788887765432
Q ss_pred ---hhhHHhh-hccCCccccCcchhHHHHHHHhhccccceeeee
Q psy12736 520 ---GYQVFTI-QLSRGYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 520 ---~fle~in-lL~~Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
..++.+. ++..+..|-++...+...+...++|..+...-+
T Consensus 114 ~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f 157 (482)
T PRK04195 114 EDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEF 157 (482)
T ss_pred cchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEe
Confidence 3455565 666666666655554444432255555554443
No 26
>KOG1969|consensus
Probab=97.10 E-value=0.0015 Score=72.70 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=64.8
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhcc---CCCcEEEEEecCcccchhhhHHhh
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGV---KNQATVFLFTAAEIVEEGYQVFTI 526 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~---~~~~~vfl~~d~qi~~e~fle~in 526 (567)
+||.|++|-||+||++.+|+-+||.+.+|+-+..=+...+++-+-.+.....+ ..+|+|+++++-+=....+..-|-
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHH
Confidence 58999999999999999999999999999998877788888888888876543 489999999876655555555444
Q ss_pred -hcc
Q psy12736 527 -QLS 529 (567)
Q Consensus 527 -lL~ 529 (567)
++.
T Consensus 409 slv~ 412 (877)
T KOG1969|consen 409 SLVK 412 (877)
T ss_pred HHHH
Confidence 443
No 27
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.09 E-value=0.00066 Score=68.72 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=35.9
Q ss_pred cccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 173 LVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 173 ~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+|+|.-..+..--+..++..+.|++|.||+|||||++++.+-+.+
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 356666666666666778899999999999999999999887643
No 28
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0034 Score=72.47 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=66.6
Q ss_pred HHHHHhc-CCCce-EEeccCCCcHhHHHHHHHHHcCCe------------------------EEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRL-SRGHC-MVVGVEGGGKRSLVRLASFAAGYQ------------------------VFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~-p~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~------------------------~~~i~~~k~y~~~~f~ed 492 (567)
+.+.+.. --.|+ ||.|+.|+||++++|..|...+|+ +++++-....+..++|+-
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReL 107 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTREL 107 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHH
Confidence 3444544 34687 899999999999999998776653 222322223556666654
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceee
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVF 557 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~ 557 (567)
++.+ ......++..|+++++.+.....-.+.+- .|-. +.+.-++...+...|. ..++..+..+
T Consensus 108 ie~v-~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl-~TIlSRCq~f 173 (944)
T PRK14949 108 LDNV-QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP-VTVLSRCLQF 173 (944)
T ss_pred HHHH-HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch-HHHHHhheEE
Confidence 4333 33345677889999988877654443322 2221 2233334444444443 4444444444
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0042 Score=65.06 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=57.4
Q ss_pred HHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHh----ccCCCcEEEEEec
Q psy12736 439 IHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLL----GVKNQATVFLFTA 513 (567)
Q Consensus 439 i~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~a----g~~~~~~vfl~~d 513 (567)
|-|.+.. --++++|-|++|+||+|++++.|...++.+.+++-+. .+.. |+|.++.+| +. |+.+++++++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk----dlr~i~e~a~~~~~~-gr~tiLflDE 112 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK----DLREIIEEARKNRLL-GRRTILFLDE 112 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH----HHHHHHHHHHHHHhc-CCceEEEEeh
Confidence 4555654 2467899999999999999999999999998886442 2454 566666555 33 6778888776
Q ss_pred Ccc----cchhhhHHh
Q psy12736 514 AEI----VEEGYQVFT 525 (567)
Q Consensus 514 ~qi----~~e~fle~i 525 (567)
.+= .++.||-.|
T Consensus 113 IHRfnK~QQD~lLp~v 128 (436)
T COG2256 113 IHRFNKAQQDALLPHV 128 (436)
T ss_pred hhhcChhhhhhhhhhh
Confidence 432 246666655
No 30
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.92 E-value=0.006 Score=63.24 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=69.3
Q ss_pred CceEE-eccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCccc-chhhhHHh
Q psy12736 448 GHCMV-VGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIV-EEGYQVFT 525 (567)
Q Consensus 448 Gh~LL-vG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~-~e~fle~i 525 (567)
.|++| .|++|+||+++++..+.-.+.++..++.+.. +....++.++.........+.+-+++++|.+-. .....+.+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~-~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L 121 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC-RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHL 121 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc-cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHH
Confidence 36666 7999999999999988877778877776652 234444556655555544455677888886654 33334444
Q ss_pred h-hcc--CCccccCcchhHHHHHHHhhccccceeeee
Q psy12736 526 I-QLS--RGYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 526 n-lL~--~Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
. ++. .+.++-+++..+...+. ..++..+.+.-+
T Consensus 122 ~~~le~~~~~~~~Ilt~n~~~~l~-~~l~sR~~~i~~ 157 (316)
T PHA02544 122 RSFMEAYSKNCSFIITANNKNGII-EPLRSRCRVIDF 157 (316)
T ss_pred HHHHHhcCCCceEEEEcCChhhch-HHHHhhceEEEe
Confidence 4 554 24455566666666665 666666555443
No 31
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.005 Score=69.09 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=71.1
Q ss_pred HHHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHH
Q psy12736 440 HRALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDL 493 (567)
Q Consensus 440 ~RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edL 493 (567)
.+.+...+ .|+ ||.|+.|+||+|++|..|...+| +++++..+.+.+..++|+-+
T Consensus 28 ~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli 107 (702)
T PRK14960 28 SSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELL 107 (702)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 44444432 466 99999999999999988776655 45666555445665555533
Q ss_pred HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeee
Q psy12736 494 KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFL 558 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~ 558 (567)
..+ ..+...++.-|+++++.+.....-...+- +|.. +.+.=++...+...+. ..++..+..+-
T Consensus 108 ~~~-~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp-~TIlSRCq~fe 173 (702)
T PRK14960 108 DNV-PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP-ITVISRCLQFT 173 (702)
T ss_pred HHH-hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh-HHHHHhhheee
Confidence 332 22234567778889988877654444444 4443 4444555556666664 55555444443
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.82 E-value=0.005 Score=64.43 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=52.5
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEE----ecCCCChhhHHHHHHHHHHHhc----cCCCcEEEEEecCc
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQ----LSRGYNEASFKEDLKSLYNLLG----VKNQATVFLFTAAE 515 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~----~~k~y~~~~f~edLk~~~~~ag----~~~~~~vfl~~d~q 515 (567)
++|.|++|+||+.+++++|.-++..++.+. .++.++.++ .-+|.++..|. .+++|+|++++|-+
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsE--k~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPG--KLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHH--HHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 688999999999999999999999998886 345566654 56888888775 36899999998643
No 33
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.0081 Score=70.67 Aligned_cols=112 Identities=21% Similarity=0.316 Sum_probs=76.6
Q ss_pred cCcceEEecHHHHHHHHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCCC----C
Q psy12736 421 KARLDLVLFEDAREHLTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRGY----N 485 (567)
Q Consensus 421 ~~~~~lvlf~dai~hi~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~y----~ 485 (567)
..+++=|+-.+.. |.|+..||.. ..+|++|+|++|+||+++++-.|.-. ++.++.+.++.-. .
T Consensus 174 ~~~l~~vigr~~e--i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 174 QGKLDPVIGRDEE--IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred cCCCCcCCCCHHH--HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 3455556666553 7777777765 45699999999999999998777654 7888888766422 2
Q ss_pred hhhHHHHHHHHHHHhccCCCcEEEEEecCcccch-----h---hhHHhh-hccCCccc
Q psy12736 486 EASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEE-----G---YQVFTI-QLSRGYNE 534 (567)
Q Consensus 486 ~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e-----~---fle~in-lL~~Gevp 534 (567)
..+|.+-||.++......+.++++++++-+-... . .-..+. .|+.|++-
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~ 309 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELH 309 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCe
Confidence 3568888999988754456788888887664421 1 122345 56777654
No 34
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.70 E-value=0.0016 Score=68.34 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 180 TKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 180 vR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
-....++..+++.+++++++||||||||++++.++..++++
T Consensus 149 ~~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 149 GDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 34567889999999999999999999999999999887654
No 35
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.01 Score=69.14 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=74.2
Q ss_pred HHHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCC--------------------------eEEEEEecCCCChhhHH
Q psy12736 439 IHRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGY--------------------------QVFTIQLSRGYNEASFK 490 (567)
Q Consensus 439 i~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~--------------------------~~~~i~~~k~y~~~~f~ 490 (567)
+.+.++.. -.|+ ||.|+.|+||+++++..|...+| ++++|+-....++++-|
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR 106 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDAR 106 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHH
Confidence 44445543 3575 89999999999999988766554 23444333333454444
Q ss_pred HHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeeee
Q psy12736 491 EDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 491 edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
+ |+.-+......++.-|++|++.+...++-...+- +|.. +.+-=+|...+.++|+ ..||..+..+-|.
T Consensus 107 ~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl-~TIrSRc~~v~F~ 177 (824)
T PRK07764 107 E-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI-GTIRSRTHHYPFR 177 (824)
T ss_pred H-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh-HHHHhheeEEEee
Confidence 3 3322233345566778888888777764444443 4442 3344467778888887 7788887776664
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.01 Score=65.10 Aligned_cols=120 Identities=12% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHhcCCC-c-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHH
Q psy12736 438 RIHRALRLSRG-H-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKE 491 (567)
Q Consensus 438 ri~RvL~~p~G-h-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~e 491 (567)
++.+.+..++- | +||.|++|+||+|+++..|...++ .+.+++.+.+-+..+.++
T Consensus 25 ~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~ 104 (472)
T PRK14962 25 LIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRK 104 (472)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHH
Confidence 44555555433 5 599999999999999988776554 466666554556655552
Q ss_pred HHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 492 DLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 492 dLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
++......-..++..++++++.+.....-.+.+- .|.. |.+--++.....+.+. ..++..+.++-+
T Consensus 105 -i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~-~~L~SR~~vv~f 173 (472)
T PRK14962 105 -IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP-PTIISRCQVIEF 173 (472)
T ss_pred -HHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh-HHHhcCcEEEEE
Confidence 4443333334456678888876655432222222 2222 3332233333334554 556655555443
No 37
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.64 E-value=0.0021 Score=67.22 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
....++..+++.+++++++|+||||||++++.++..++++.
T Consensus 148 ~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ 188 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIE 188 (332)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 35567888899999999999999999999999998876543
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.62 E-value=0.0095 Score=61.39 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=50.6
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI 526 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in 526 (567)
..|++|.|++|+||+++++..|...+.++..+..+.... ..++...+...+ .+.+++++|-|-..+...|.+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~---~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----PGDLAAILTNLE---EGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----chhHHHHHHhcc---cCCEEEEehHhhhCHHHHHHhh
Confidence 468999999999999999999988887765543221112 234444444433 4568888887776665555555
Q ss_pred -hcc
Q psy12736 527 -QLS 529 (567)
Q Consensus 527 -lL~ 529 (567)
+++
T Consensus 103 ~~~~ 106 (305)
T TIGR00635 103 PAME 106 (305)
T ss_pred HHHh
Confidence 543
No 39
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.61 E-value=0.0019 Score=57.48 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.+++++||+|||||++++.+.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999988764
No 40
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.012 Score=64.87 Aligned_cols=104 Identities=12% Similarity=0.181 Sum_probs=66.4
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCC----------------------------eEEEEEecCCCChhhHHHHHHHHHHH
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGY----------------------------QVFTIQLSRGYNEASFKEDLKSLYNL 499 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~----------------------------~~~~i~~~k~y~~~~f~edLk~~~~~ 499 (567)
++.||.|+.|+||++++|..|...+| ++.++....+.+. +|++.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~v----d~Ir~iie~ 119 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSV----DDIRRIIES 119 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCH----HHHHHHHHH
Confidence 56799999999999999998876655 2344443333444 455555544
Q ss_pred h---ccCCCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeee
Q psy12736 500 L---GVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 500 a---g~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
+ ...++.-|+++++.+.... +..| ||.+=| +-=+|...+.++|. ..++..+..+-+
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls~---~a~naLLk~LEepp~~~vfI~aTte~~kI~-~tI~SRc~~~ef 184 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSK---GAFNALLKTLEEPPPHIIFIFATTEVQKIP-ATIISRCQRYDL 184 (507)
T ss_pred HHhccccCCcEEEEEEChhhcCH---HHHHHHHHHHhhcCCCEEEEEEeCChHHhh-HHHHhcceEEEc
Confidence 4 3456667888888766554 3344 443222 22257777888887 777777766654
No 41
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.60 E-value=0.0014 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.1
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+.+++++||+|||||+++..+...+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 578999999999999999999887754
No 42
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.54 E-value=0.0067 Score=62.86 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChh-----------------hHHHHHHHHHHHhc
Q psy12736 439 IHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEA-----------------SFKEDLKSLYNLLG 501 (567)
Q Consensus 439 i~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~-----------------~f~edLk~~~~~ag 501 (567)
|...| .+++|+||.|++|+||+++++..|...+..++.|+.+..-... +|++. .+-.|-
T Consensus 57 vl~~l-~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~G---pL~~A~ 132 (327)
T TIGR01650 57 ICAGF-AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDG---ILPWAL 132 (327)
T ss_pred HHHHH-hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecC---cchhHH
Confidence 34445 4588999999999999999999999999999999876653332 22221 121221
Q ss_pred cCCCcEEEEEecCcccchhhhHHhh-hccC
Q psy12736 502 VKNQATVFLFTAAEIVEEGYQVFTI-QLSR 530 (567)
Q Consensus 502 ~~~~~~vfl~~d~qi~~e~fle~in-lL~~ 530 (567)
.++.++++++-+...+.-+..+| +|..
T Consensus 133 --~~g~illlDEin~a~p~~~~~L~~lLE~ 160 (327)
T TIGR01650 133 --QHNVALCFDEYDAGRPDVMFVIQRVLEA 160 (327)
T ss_pred --hCCeEEEechhhccCHHHHHHHHHHhcc
Confidence 34578999998888888999999 8874
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.53 E-value=0.014 Score=57.22 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVE 518 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~ 518 (567)
+-.|+||.|++|+||+||+++.|.-.+.++....-. .... ..||.+++...+ +..|+++++-+=.+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~-~i~k---~~dl~~il~~l~---~~~ILFIDEIHRln 114 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP-AIEK---AGDLAAILTNLK---EGDILFIDEIHRLN 114 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC-C--S---CHHHHHHHHT-----TT-EEEECTCCC--
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccch-hhhh---HHHHHHHHHhcC---CCcEEEEechhhcc
Confidence 457999999999999999999999999987654321 1111 257888776542 34566666654433
No 44
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.0012 Score=59.79 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
||||+||||||||.+++.+...+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999988773
No 45
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.52 E-value=0.0029 Score=60.57 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
....++...++.+..++++||+|+|||++++.++..+++
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 355677888999999999999999999999988876543
No 46
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.017 Score=64.23 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=71.9
Q ss_pred HHHHHhcCC-Cc-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRLSR-GH-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~p~-Gh-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~ed 492 (567)
+.+.++..+ .| .|+.|+.|+||++++|..|...++ ++.+++....-+..+.++-
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~i 107 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEI 107 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHH
Confidence 445566544 36 479999999999999988875543 4455544344455444332
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
+ ..+......++.-|++++|.+-....-.+.+- .|.. +.+.=+|...+...|. ..++..+.++-+
T Consensus 108 i-~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil-~tI~SRc~~~~f 175 (546)
T PRK14957 108 L-DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP-VTILSRCIQLHL 175 (546)
T ss_pred H-HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh-hhHHHheeeEEe
Confidence 2 22233334567778889887666554444444 4443 2333455566677776 667777766655
No 47
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.47 E-value=0.024 Score=57.13 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHhcCCCceEEeccCCCcHhHHHHHHHHHcCC-eEEEEE-ecCCCChh--------------------hHHHHHHHHHHH
Q psy12736 442 ALRLSRGHCMVVGVEGGGKRSLVRLASFAAGY-QVFTIQ-LSRGYNEA--------------------SFKEDLKSLYNL 499 (567)
Q Consensus 442 vL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~-~~~~i~-~~k~y~~~--------------------~f~edLk~~~~~ 499 (567)
.++.+.|.++|+|++|+||+++++..+..... .+.... +....+.. +-...|...+..
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 34566677899999999999999988766442 222111 11111111 112233443444
Q ss_pred hccCCCcEEEEEecCcccchhhhHHhh-hcc
Q psy12736 500 LGVKNQATVFLFTAAEIVEEGYQVFTI-QLS 529 (567)
Q Consensus 500 ag~~~~~~vfl~~d~qi~~e~fle~in-lL~ 529 (567)
...++++.+++++|.|...+.-++.+. +.+
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 444678899999999988877777776 543
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.45 E-value=0.0094 Score=52.89 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=56.2
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHc--------CCeEEEEEecCCCChhhHHHHHH-----------------HHHHH
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAA--------GYQVFTIQLSRGYNEASFKEDLK-----------------SLYNL 499 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~--------~~~~~~i~~~k~y~~~~f~edLk-----------------~~~~~ 499 (567)
+.++++++.|++|+||+++++-.+.-. +..+..++....-+..+|...+- +.+.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 457889999999999999987666554 67777777654434333333322 22222
Q ss_pred hccCCCcEEEEEecCccc-chhhhHHhh-hccCCccccCc
Q psy12736 500 LGVKNQATVFLFTAAEIV-EEGYQVFTI-QLSRGYNEASF 537 (567)
Q Consensus 500 ag~~~~~~vfl~~d~qi~-~e~fle~in-lL~~Gevp~Lf 537 (567)
+--+....+++++|.|-. +..+++.+- +++...++-++
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl 121 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVL 121 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEE
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEE
Confidence 222223368888988888 888888887 77765555433
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.43 E-value=0.015 Score=62.96 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHHHHhcCC-CceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHh---ccCCCcEEEEEecC
Q psy12736 439 IHRALRLSR-GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLL---GVKNQATVFLFTAA 514 (567)
Q Consensus 439 i~RvL~~p~-Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~a---g~~~~~~vfl~~d~ 514 (567)
+.+++.... .|++|.|++|+||+++++..|.-.+..+..+..+. .+.. +++.++..+ ...++..+++++|.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~~----~ir~ii~~~~~~~~~g~~~vL~IDEi 101 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGVK----DLREVIEEARQRRSAGRRTILFIDEI 101 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccHH----HHHHHHHHHHHhhhcCCceEEEEech
Confidence 455555543 48899999999999999999998888888776542 2333 344444333 23457788888887
Q ss_pred cccchhhhHHh
Q psy12736 515 EIVEEGYQVFT 525 (567)
Q Consensus 515 qi~~e~fle~i 525 (567)
+-......+.+
T Consensus 102 ~~l~~~~q~~L 112 (413)
T PRK13342 102 HRFNKAQQDAL 112 (413)
T ss_pred hhhCHHHHHHH
Confidence 65544333333
No 50
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.42 E-value=0.0026 Score=64.47 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred CCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 168 SFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 168 ~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
.+.++...-.-......++...++.+..++++||||||||++++.++..+++.
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 33344333333345555667777789999999999999999999999988776
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=96.36 E-value=0.014 Score=60.90 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=50.0
Q ss_pred CceEEeccCCCcHhHHHHHHHHHc-C----CeEEEEEecCCCChhhHHHHHHHHHHHhc-c-CCCcEEEEEecCcccchh
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAA-G----YQVFTIQLSRGYNEASFKEDLKSLYNLLG-V-KNQATVFLFTAAEIVEEG 520 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~-~----~~~~~i~~~k~y~~~~f~edLk~~~~~ag-~-~~~~~vfl~~d~qi~~e~ 520 (567)
.|+||.|++|+||+++++..|... + ..+.+++.+...+....++-++..-.... . .++.-+++++|.+-....
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 489999999999999999877654 2 23555665555666666666655433221 1 245667788877666544
Q ss_pred hhHHhh
Q psy12736 521 YQVFTI 526 (567)
Q Consensus 521 fle~in 526 (567)
--..+.
T Consensus 115 aq~aL~ 120 (319)
T PLN03025 115 AQQALR 120 (319)
T ss_pred HHHHHH
Confidence 433344
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.017 Score=65.69 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=74.5
Q ss_pred HHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHHH
Q psy12736 441 RALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDLK 494 (567)
Q Consensus 441 RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edLk 494 (567)
+.+...+ .|+ ||.|..|+||+|+++..|...+| ++++|+-..+.+..+.++-++
T Consensus 30 ~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe 109 (830)
T PRK07003 30 HALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLE 109 (830)
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHH
Confidence 3345433 677 89999999999999977765544 455665555556655554443
Q ss_pred HHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHHHHHhhccccceeeeee
Q psy12736 495 SLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 495 ~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
.+. ..-.+++.-|+++++.+..... ..| ||.+ ..+.=+|...+..+|. ..|+..+..+-|.
T Consensus 110 ~a~-~~P~~gr~KVIIIDEah~LT~~---A~NALLKtLEEPP~~v~FILaTtd~~KIp-~TIrSRCq~f~Fk 176 (830)
T PRK07003 110 RAV-YAPVDARFKVYMIDEVHMLTNH---AFNAMLKTLEEPPPHVKFILATTDPQKIP-VTVLSRCLQFNLK 176 (830)
T ss_pred HHH-hccccCCceEEEEeChhhCCHH---HHHHHHHHHHhcCCCeEEEEEECChhhcc-chhhhheEEEecC
Confidence 332 2233456678888887776542 345 5442 3455677778888886 7888887777654
No 53
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.31 E-value=0.0037 Score=65.01 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 182 ~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++..+++.+.+++++|+||||||++++.++..+
T Consensus 133 ~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 133 QASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677888899999999999999999999988865
No 54
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.032 Score=62.62 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=68.8
Q ss_pred HHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCC--------------------------eEEEEEecCCCChhhHHH
Q psy12736 440 HRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGY--------------------------QVFTIQLSRGYNEASFKE 491 (567)
Q Consensus 440 ~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~--------------------------~~~~i~~~k~y~~~~f~e 491 (567)
.+.+... -.|+ |+.|+.|+||+|+++..|...+| ++++++-..+-+..+.++
T Consensus 26 ~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRe 105 (584)
T PRK14952 26 SSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRE 105 (584)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHH
Confidence 3344443 4686 89999999999999988765432 244444333334554432
Q ss_pred HHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCC-----ccccCcchhHHHHHHHhhccccceeeee
Q psy12736 492 DLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRG-----YNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 492 dLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~G-----evp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
|+.-+..+...+..-|+++++.+....+ ..| ||.+= .+-=+|...|.++|. ..++..+..+-+
T Consensus 106 -l~~~~~~~P~~~~~KVvIIDEah~Lt~~---A~NALLK~LEEpp~~~~fIL~tte~~kll-~TI~SRc~~~~F 174 (584)
T PRK14952 106 -LRDRAFYAPAQSRYRIFIVDEAHMVTTA---GFNALLKIVEEPPEHLIFIFATTEPEKVL-PTIRSRTHHYPF 174 (584)
T ss_pred -HHHHHHhhhhcCCceEEEEECCCcCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHhhH-HHHHHhceEEEe
Confidence 4444444444566678888887766653 344 44322 222355566667776 777776666554
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.022 Score=62.97 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCC-----------------------eEEEEEecCCCChhhHHHHHHHHHHHhcc
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGY-----------------------QVFTIQLSRGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~-----------------------~~~~i~~~k~y~~~~f~edLk~~~~~ag~ 502 (567)
-+|+ |+.|++|+||+|+++..|....+ .+.++..+.+.+..+.++ ++..+.....
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~ 113 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRD-LREKVLLAPL 113 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhccc
Confidence 4688 99999999999999987765543 256666555556554443 4443433344
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccceeeee
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
.+.+-++++++.+..... ..| ||..=|-| -++...+...|. ..++..+..+-+
T Consensus 114 ~~~~kVVIIDEad~ls~~---a~naLLk~LEep~~~t~~Il~t~~~~kl~-~~I~SRc~~~~f 172 (504)
T PRK14963 114 RGGRKVYILDEAHMMSKS---AFNALLKTLEEPPEHVIFILATTEPEKMP-PTILSRTQHFRF 172 (504)
T ss_pred cCCCeEEEEECccccCHH---HHHHHHHHHHhCCCCEEEEEEcCChhhCC-hHHhcceEEEEe
Confidence 566777888887655432 233 33322211 134444455554 455555554443
No 56
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.29 E-value=0.0025 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+|++||+|||||++++.+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999988763
No 57
>KOG0738|consensus
Probab=96.28 E-value=0.016 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=23.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-=+-||++||||||||++.+..-....
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3446799999999999999998876543
No 58
>PHA02244 ATPase-like protein
Probab=96.25 E-value=0.0054 Score=64.40 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-.+..++..+.||||.||||||||+++..+...+
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788999999999999999999999876553
No 59
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.23 E-value=0.007 Score=65.39 Aligned_cols=36 Identities=28% Similarity=0.182 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCC--CeEEeccCCCCchhhHHHHHhccC
Q psy12736 183 TWILSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 183 ~~ll~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.-.+..++.++. +++|+||+|||||++++.+.+...
T Consensus 24 ~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 24 GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334555555554 799999999999999998877654
No 60
>KOG0744|consensus
Probab=96.20 E-value=0.002 Score=65.57 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.4
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..++=+|+.||||||||++.+.+-+++.
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 45677899999999999999999988764
No 61
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.016 Score=68.29 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=73.4
Q ss_pred CcceEEecHHHHHHHHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHH----------cCCeEEEEEecC-----CCC
Q psy12736 422 ARLDLVLFEDAREHLTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFA----------AGYQVFTIQLSR-----GYN 485 (567)
Q Consensus 422 ~~~~lvlf~dai~hi~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i----------~~~~~~~i~~~k-----~y~ 485 (567)
.+++=|+-.+. -|.|+..+|.. ...|++|+|++|+||+++++..|.- .++.++.++++. .|.
T Consensus 170 ~~~~~~igr~~--ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 170 GKLDPVIGRDE--EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred CCCCcCCCcHH--HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 34444544444 26677777755 4579999999999999999876553 367888876543 232
Q ss_pred hhhHHHHHHHHHHHhccCCCcEEEEEecCcccc-----h---hhhHHhh-hccCCccc
Q psy12736 486 EASFKEDLKSLYNLLGVKNQATVFLFTAAEIVE-----E---GYQVFTI-QLSRGYNE 534 (567)
Q Consensus 486 ~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~-----e---~fle~in-lL~~Gevp 534 (567)
.+|.+.++.++..+...++++++++++-+... + .....+- .|+.|++.
T Consensus 248 -g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~ 304 (852)
T TIGR03346 248 -GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELH 304 (852)
T ss_pred -hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceE
Confidence 46888899999877545678888888766332 1 1223334 56777765
No 62
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.019 Score=64.94 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHhc-CCCce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRL-SRGHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~-p~Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~ed 492 (567)
+.+.+.. --.|+ |+.|+.|+||++++|..|...+| ++++++-....+..+.|+-
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~l 107 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTREL 107 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHH
Confidence 3444554 24576 89999999999999998877665 2344544333456665543
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
++. +..+...++.-|+++++.+.....-...+- .|.. +.+.=++...+..+|. ..++..+..+-|
T Consensus 108 i~~-~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl-~TI~SRC~~~~f 175 (647)
T PRK07994 108 LDN-VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP-VTILSRCLQFHL 175 (647)
T ss_pred HHH-HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc-hHHHhhheEeeC
Confidence 333 333445677888999988877663333332 2221 3333455555566665 566665555544
No 63
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.13 E-value=0.0051 Score=63.44 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 182 ~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...++..+++.+.+++++|+||||||++++.++..++
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455677788999999999999999999999988764
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.038 Score=58.67 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCC
Q psy12736 430 EDAREHLTRIHRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRG 483 (567)
Q Consensus 430 ~dai~hi~ri~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~ 483 (567)
+++++.+. +.+... -.|+ ||.|+.|+||+++++..|...++ ++..++.+..
T Consensus 22 ~~~~~~l~---~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~ 98 (363)
T PRK14961 22 KHIVTAIS---NGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASR 98 (363)
T ss_pred HHHHHHHH---HHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccccc
Confidence 34444433 334442 3576 89999999999999998876543 2334433322
Q ss_pred CChhhHHHHHHHHHHH---hccCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccc
Q psy12736 484 YNEASFKEDLKSLYNL---LGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQA 554 (567)
Q Consensus 484 y~~~~f~edLk~~~~~---ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~ 554 (567)
.+.. +++.++.. ....++.-|++++|.+-..+. ..| +|..-|-| -++...+.+++. .+++..+
T Consensus 99 ~~v~----~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---a~naLLk~lEe~~~~~~fIl~t~~~~~l~-~tI~SRc 170 (363)
T PRK14961 99 TKVE----EMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---SFNALLKTLEEPPQHIKFILATTDVEKIP-KTILSRC 170 (363)
T ss_pred CCHH----HHHHHHHHHhcCcccCCceEEEEEChhhcCHH---HHHHHHHHHhcCCCCeEEEEEcCChHhhh-HHHHhhc
Confidence 3443 44444443 334456678888887766542 345 55444322 355556666765 6666655
Q ss_pred eeeee
Q psy12736 555 TVFLF 559 (567)
Q Consensus 555 ~~~~~ 559 (567)
.++-+
T Consensus 171 ~~~~~ 175 (363)
T PRK14961 171 LQFKL 175 (363)
T ss_pred eEEeC
Confidence 55544
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.029 Score=62.99 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=67.0
Q ss_pred HHHHHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCCe------------------------EEEEEecCCCChhhHHH
Q psy12736 438 RIHRALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGYQ------------------------VFTIQLSRGYNEASFKE 491 (567)
Q Consensus 438 ri~RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~~------------------------~~~i~~~k~y~~~~f~e 491 (567)
.+.|.+...+ .|+ ||.|+.|+||+++++.-|....|+ +++|+-..+.++.+-++
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~ 106 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKR 106 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHH
Confidence 4455565543 455 689999999999999988777663 55554333445544443
Q ss_pred HHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhcccccee
Q psy12736 492 DLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATV 556 (567)
Q Consensus 492 dLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~ 556 (567)
|+..+......++..++++++.+-....-.+.+- .|.. +.+.-++...+...|. ..++..+..
T Consensus 107 -L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll-~TI~SRcq~ 172 (624)
T PRK14959 107 -LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP-VTIVSRCQH 172 (624)
T ss_pred -HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh-HHHHhhhhc
Confidence 4444554556677788889887766543222222 2221 2333345445555554 444444433
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.09 E-value=0.035 Score=65.31 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=74.4
Q ss_pred cCcceEEecHHHHHHHHHHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHH----------cCCeEEEEEecCC----CC
Q psy12736 421 KARLDLVLFEDAREHLTRIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFA----------AGYQVFTIQLSRG----YN 485 (567)
Q Consensus 421 ~~~~~lvlf~dai~hi~ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i----------~~~~~~~i~~~k~----y~ 485 (567)
..+++=|+-.+.. |.|+..+|... ..|++|+|++|+||+++++..|.. .+..++.++++.- -.
T Consensus 183 ~~~ld~~iGr~~e--i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 183 EGKIDPVLGRDDE--IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCCcccCCHHH--HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 4555555555553 55666665553 568999999999999999987753 3566776665431 12
Q ss_pred hhhHHHHHHHHHHHhccCCCcEEEEEecCcccch-----hhhH---Hhh-hccCCccc
Q psy12736 486 EASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEE-----GYQV---FTI-QLSRGYNE 534 (567)
Q Consensus 486 ~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e-----~fle---~in-lL~~Gevp 534 (567)
..+|.+.||.++..+...+.++++++++-+-... .-.+ .+- .|..|++.
T Consensus 261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~ 318 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318 (852)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE
Confidence 4688899999999875456778888876554421 1122 244 57788765
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.09 E-value=0.025 Score=65.14 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=51.3
Q ss_pred HHHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 437 TRIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 437 ~ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
..+.|++... .+|++|.|++|+||+++++..+...+..+..++.+ ..+..+.++.++.+-......++..+++++|.+
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh 119 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVH 119 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChh
Confidence 3455556554 35999999999999999999998887777666433 123444444443332222223456778888765
Q ss_pred ccc
Q psy12736 516 IVE 518 (567)
Q Consensus 516 i~~ 518 (567)
-.+
T Consensus 120 ~Ln 122 (725)
T PRK13341 120 RFN 122 (725)
T ss_pred hCC
Confidence 443
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.041 Score=60.44 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=72.3
Q ss_pred ceEEeccCCCcHhHHHHHHHHHc------------------------CCeEEEEEecCCCChhhHHHHHHHHHHHhccCC
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAA------------------------GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKN 504 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~------------------------~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~ 504 (567)
+.||.|+.|+||+|++|+.|... ..++++++.+.+.+..+.|+-+.. .......+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~-~~~~P~~~ 115 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILEN-SCYLPISS 115 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHH-HHhccccC
Confidence 47999999999999999988642 235677776666677655543322 23334556
Q ss_pred CcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeeee
Q psy12736 505 QATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 505 ~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
+.-|+++++.+.... +..| ||.+=| +-=+|...|.++|. ..++..+..+-+.
T Consensus 116 ~~KVvIIDEah~Ls~---~A~NaLLK~LEePp~~v~fIlatte~~Kl~-~tI~SRc~~~~f~ 173 (491)
T PRK14964 116 KFKVYIIDEVHMLSN---SAFNALLKTLEEPAPHVKFILATTEVKKIP-VTIISRCQRFDLQ 173 (491)
T ss_pred CceEEEEeChHhCCH---HHHHHHHHHHhCCCCCeEEEEEeCChHHHH-HHHHHhheeeecc
Confidence 777888888766654 3456 665544 33467778888887 7788777766553
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.06 E-value=0.03 Score=58.32 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=23.8
Q ss_pred HHHHhcCC-CceEEeccCCCcHhHHHHHHHHHc
Q psy12736 440 HRALRLSR-GHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 440 ~RvL~~p~-Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
.+.++.++ +|+++.|++|+||+++++..+.-.
T Consensus 28 ~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 28 SRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33444443 489999999999999998766544
No 70
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.04 E-value=0.004 Score=56.31 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|+++||||||||++++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999987653
No 71
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.03 E-value=0.0063 Score=63.11 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 182 ~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
...+++..++.+.+++++||+|||||++++.++..+++.
T Consensus 133 ~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 133 IKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence 456778889999999999999999999999888776543
No 72
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.03 E-value=0.0055 Score=63.49 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=34.9
Q ss_pred cccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 171 DILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 171 ~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-++...++++. +-..+..++|+||.||+|||||++++.+...+.
T Consensus 45 ~~y~f~~~~~~~---vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 45 PAYLFDKATTKA---ICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCccCCHHHHHH---HHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 346777777664 333446689999999999999999999887664
No 73
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.02 E-value=0.0087 Score=60.33 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=38.8
Q ss_pred cccccCcchhhHHHHHHHHHhcCC-CeEEeccCCCCchhhHHHHHhccC
Q psy12736 171 DILVPTTDSTKLTWILSLMNEIKR-PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 171 ~i~VpT~dtvR~~~ll~~ll~~~~-pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-+.||....+....++..+..+. .++++||+|+|||++++.+++.+.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 456778887777777777777655 588999999999999999988764
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.027 Score=63.21 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=74.6
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCC-----------------------------eEEEEEecCCCChhhHHHHHHHH
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGY-----------------------------QVFTIQLSRGYNEASFKEDLKSL 496 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~-----------------------------~~~~i~~~k~y~~~~f~edLk~~ 496 (567)
-.|+ ||.|+.|+||+++++.-|...+| ++++|+-.++-+.++.++-++.+
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~ 116 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKA 116 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHH
Confidence 3577 89999999999999988776655 45566655556676666544444
Q ss_pred HHHhccCCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHHHHHhhccccceeeeee
Q psy12736 497 YNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 497 ~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
... ...++.-|+++++.+..+. +..| ||.+ +.+.=++...+..+|. ..++..+..+-|.
T Consensus 117 ~~~-P~~gr~KViIIDEah~Ls~---~AaNALLKTLEEPP~~v~FILaTtep~kLl-pTIrSRCq~f~f~ 181 (700)
T PRK12323 117 VYA-PTAGRFKVYMIDEVHMLTN---HAFNAMLKTLEEPPEHVKFILATTDPQKIP-VTVLSRCLQFNLK 181 (700)
T ss_pred Hhc-hhcCCceEEEEEChHhcCH---HHHHHHHHhhccCCCCceEEEEeCChHhhh-hHHHHHHHhcccC
Confidence 333 2456677888888777665 3457 6664 3444577778888886 7787777766553
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.96 E-value=0.0038 Score=55.46 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=20.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.+..++++||+|+|||++++++++.+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 4578899999999999999999998764
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.95 E-value=0.021 Score=66.34 Aligned_cols=77 Identities=14% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCCC----ChhhHHHHHHHHHHHhcc
Q psy12736 438 RIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRGY----NEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 438 ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~y----~~~~f~edLk~~~~~ag~ 502 (567)
|+.++|... ..|+||+|++|+||+++++..|... ++.+++++++.-. -..+|.+.||+++..+.-
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc
Confidence 566666553 5689999999999999999887754 7888888754322 124788999999988743
Q ss_pred CCCcEEEEEecCc
Q psy12736 503 KNQATVFLFTAAE 515 (567)
Q Consensus 503 ~~~~~vfl~~d~q 515 (567)
+.++++++++-+
T Consensus 273 -~~~~ILfiDEih 284 (731)
T TIGR02639 273 -EPNAILFIDEIH 284 (731)
T ss_pred -cCCeEEEEecHH
Confidence 357777777655
No 77
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.033 Score=61.75 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCCe------------------------EEEEEecCCCChhhHHHHHHHHHHHhc
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGYQ------------------------VFTIQLSRGYNEASFKEDLKSLYNLLG 501 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~------------------------~~~i~~~k~y~~~~f~edLk~~~~~ag 501 (567)
-.|+ |+.|+.|+||+|++|..|...+|+ ++++....+.+..++|+-+.. +..+.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~-~~~~p 115 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDN-IPYAP 115 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHH-Hhhcc
Confidence 3576 899999999999999988876653 667766666777777764443 33344
Q ss_pred cCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 502 VKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 502 ~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
..++.-|+++++.+.....-.+.+- .|.. +.+.=+|...+..++. ..++..+..+-+
T Consensus 116 ~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~-~tI~SRc~~~~f 175 (509)
T PRK14958 116 TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP-VTVLSRCLQFHL 175 (509)
T ss_pred ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch-HHHHHHhhhhhc
Confidence 5667778888888776653322222 2221 2233344445555654 556555554433
No 78
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.05 Score=62.18 Aligned_cols=116 Identities=12% Similarity=0.171 Sum_probs=68.8
Q ss_pred HHHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCCe---------------------EEEEEecCCCChhhHHHHHHH
Q psy12736 439 IHRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGYQ---------------------VFTIQLSRGYNEASFKEDLKS 495 (567)
Q Consensus 439 i~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~---------------------~~~i~~~k~y~~~~f~edLk~ 495 (567)
+.+.+... -.|+ |+.|+.|+||++++|..|....|. ++++.-..+.+..+.++ |..
T Consensus 30 L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IRe-Lie 108 (725)
T PRK07133 30 LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRE-LIE 108 (725)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHH-HHH
Confidence 44555553 3677 899999999999999887665442 23333222234444333 334
Q ss_pred HHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCC-----ccccCcchhHHHHHHHhhccccceeeee
Q psy12736 496 LYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRG-----YNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 496 ~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~G-----evp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
.+......++.-|+++.+.+....+ ..| ||..= .+-=++...+.+.|. ..++..+..+-+
T Consensus 109 ~~~~~P~~g~~KV~IIDEa~~LT~~---A~NALLKtLEEPP~~tifILaTte~~KLl-~TI~SRcq~ieF 174 (725)
T PRK07133 109 NVKNLPTQSKYKIYIIDEVHMLSKS---AFNALLKTLEEPPKHVIFILATTEVHKIP-LTILSRVQRFNF 174 (725)
T ss_pred HHHhchhcCCCEEEEEEChhhCCHH---HHHHHHHHhhcCCCceEEEEEcCChhhhh-HHHHhhceeEEc
Confidence 4444455677778889887766543 455 55322 222355566777776 666666655544
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.036 Score=62.57 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=72.6
Q ss_pred HHHHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCC-----------------------------eEEEEEecCCCChh
Q psy12736 439 IHRALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGY-----------------------------QVFTIQLSRGYNEA 487 (567)
Q Consensus 439 i~RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~-----------------------------~~~~i~~~k~y~~~ 487 (567)
+.+.+...+ .|+ ||.|+.|+||++++|..|...+| ++++++-..+.+..
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd 107 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVD 107 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHH
Confidence 344455443 477 89999999999999998776654 34555544456665
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccceeeee
Q psy12736 488 SFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 488 ~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
+.++-+..+ ......++--|+++++.+.... +..| ||.+-|-| =+|...|..+|. ..++..+.++-+
T Consensus 108 ~iReli~~~-~~~p~~g~~KV~IIDEvh~Ls~---~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil-~TIlSRc~~~~f 180 (618)
T PRK14951 108 EVQQLLEQA-VYKPVQGRFKVFMIDEVHMLTN---TAFNAMLKTLEEPPEYLKFVLATTDPQKVP-VTVLSRCLQFNL 180 (618)
T ss_pred HHHHHHHHH-HhCcccCCceEEEEEChhhCCH---HHHHHHHHhcccCCCCeEEEEEECCchhhh-HHHHHhceeeec
Confidence 555544432 2233456667888998877665 3466 66654432 245555666665 566666666554
No 80
>CHL00176 ftsH cell division protein; Validated
Probab=95.90 E-value=0.033 Score=63.31 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=47.3
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC---C-ChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG---Y-NEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~---y-~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.++||.|++|+||++++|..|.-++..++.+..+.- | +.. ...++.++.+| ..+.|.+++++|-+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~--~~~vr~lF~~A-~~~~P~ILfIDEID 285 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG--AARVRDLFKKA-KENSPCIVFIDEID 285 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh--HHHHHHHHHHH-hcCCCcEEEEecch
Confidence 359999999999999999999999998888764321 0 110 13456667666 35778888888764
No 81
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.88 E-value=0.0096 Score=53.75 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 178 DSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 178 dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
+|.+...-+...+..+.-++|.|+.|+|||++++.+.+.+...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5566666677777889999999999999999999999887543
No 82
>PF13173 AAA_14: AAA domain
Probab=95.87 E-value=0.0065 Score=54.29 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|++.+++.||.|||||++++++++.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 578899999999999999999998764
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.84 E-value=0.0094 Score=58.41 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.1
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+.+++|+||+|||||++++.+.+..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999988764
No 84
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.81 E-value=0.022 Score=61.35 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHH------hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC----CCChhhHHHHHHHHHHHh
Q psy12736 431 DAREHLTRIHRAL------RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR----GYNEASFKEDLKSLYNLL 500 (567)
Q Consensus 431 dai~hi~ri~RvL------~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k----~y~~~~f~edLk~~~~~a 500 (567)
.+..|..|+.-.. ..+.+|+||+|++|+||++++|..|...+..++.+..+. +|--.+-..-+..++..+
T Consensus 86 av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~ 165 (412)
T PRK05342 86 AVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAA 165 (412)
T ss_pred HHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhc
Confidence 3345666663222 235799999999999999999999988888888776432 332222222334443333
Q ss_pred cc---CCCcEEEEEecCccc
Q psy12736 501 GV---KNQATVFLFTAAEIV 517 (567)
Q Consensus 501 g~---~~~~~vfl~~d~qi~ 517 (567)
.. +..+-++++++-+-.
T Consensus 166 ~~~~~~a~~gIi~iDEIdkl 185 (412)
T PRK05342 166 DYDVEKAQRGIVYIDEIDKI 185 (412)
T ss_pred cccHHHcCCcEEEEechhhh
Confidence 21 234556666664443
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.79 E-value=0.046 Score=57.14 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=47.6
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccch
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEE 519 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e 519 (567)
.|.+|+++.|++|+||+++++..|...+..+..+..... +-..|+..++...+ .+.+++++|-+-...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~----~~~~~l~~~l~~l~---~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL----EKPGDLAAILTNLE---EGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc----cChHHHHHHHHhcc---cCCEEEEecHhhcch
Confidence 456799999999999999999999998887765543211 12246666665543 456778888665543
No 86
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.77 E-value=0.011 Score=57.25 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.-+..-...++++|+.||+|||||++++.+-.-+++
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 334445567999999999999999999987665554
No 87
>PF13245 AAA_19: Part of AAA domain
Probab=95.73 E-value=0.0091 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=19.1
Q ss_pred CCCeE-EeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCI-VVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvL-l~GptGtGKT~~i~~~l~~l 217 (567)
+.+++ +.||||||||.++.+.+..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45555 49999999998887776654
No 88
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.064 Score=60.63 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=67.0
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCC-------------------------eEEEEEecCCCChhhHHHHHHHHHHHh
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGY-------------------------QVFTIQLSRGYNEASFKEDLKSLYNLL 500 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~-------------------------~~~~i~~~k~y~~~~f~edLk~~~~~a 500 (567)
.+|+ ||.|+.|+||+++++..|...+| ++++++.+...+..+.++ +...+...
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~ 115 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFR 115 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhC
Confidence 4676 89999999999999987755432 244454444556555443 33333333
Q ss_pred ccCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccceeeee
Q psy12736 501 GVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 501 g~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
...+..-|+++++.+.... +..| ||..-|-| =++..++.+.+. ..++..+..+.+
T Consensus 116 p~~~~~kVvIIDEa~~L~~---~a~naLLk~LEepp~~tv~Il~t~~~~kll-~tI~SR~~~i~f 176 (585)
T PRK14950 116 PALARYKVYIIDEVHMLST---AAFNALLKTLEEPPPHAIFILATTEVHKVP-ATILSRCQRFDF 176 (585)
T ss_pred cccCCeEEEEEeChHhCCH---HHHHHHHHHHhcCCCCeEEEEEeCChhhhh-HHHHhccceeeC
Confidence 3456677888888765554 3455 55433322 356667788876 677777666655
No 89
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.68 E-value=0.013 Score=61.07 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 182 ~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++...++.+.+++++|+||||||++++.++...
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 345677788899999999999999999999988753
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.63 E-value=0.019 Score=66.12 Aligned_cols=88 Identities=9% Similarity=0.134 Sum_probs=53.8
Q ss_pred HHHHHHhcC--CCeEEeccCCCCchhhHHHHHhccCCCcceeee-------------c-----CCCCCceEEEEe-ecc-
Q psy12736 185 ILSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA-------------E-----LPPTPAKFHYIF-NLR- 242 (567)
Q Consensus 185 ll~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~-------------e-----gPp~gkk~v~iF-Nl~- 242 (567)
.+..++.++ .+++|+||+|||||++++.+-+... ..+..++ + .+..+++.++++ ++.
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~ 120 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHR 120 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-CcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhh
Confidence 344444444 3899999999999999988766543 2333332 0 122344444133 110
Q ss_pred --------------------------c----h-hhhhhccccccccccCCHHHHHHHHHHhhh
Q psy12736 243 --------------------------D----L-SRIIQGLTATEKIIFNTKEMFVRAWRNEFT 274 (567)
Q Consensus 243 --------------------------D----~-~R~~rg~f~~~~~~~~s~~sl~~I~~~il~ 274 (567)
+ + .++.+ +..++.++.++.+++..|....+.
T Consensus 121 Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S-R~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 121 FNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS-RSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc-cccceecCCCCHHHHHHHHHHHHH
Confidence 0 0 04444 566788889999999999888775
No 91
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.62 E-value=0.034 Score=48.66 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCe---EEEEEecC
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQ---VFTIQLSR 482 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~---~~~i~~~k 482 (567)
+++++|+|++||||+++++..|...... ++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 5789999999999999999877776664 77775554
No 92
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.61 E-value=0.046 Score=60.14 Aligned_cols=67 Identities=10% Similarity=0.270 Sum_probs=51.3
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCC----ChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGY----NEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y----~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..|+ .+||.|++|+||+.++|..|.-.+..++.+..++-+ +.+ ...+++++..|. ...|++++++|-
T Consensus 257 ~~pk-GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes--e~~l~~~f~~A~-~~~P~IL~IDEI 327 (489)
T CHL00195 257 PTPR-GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES--ESRMRQMIRIAE-ALSPCILWIDEI 327 (489)
T ss_pred CCCc-eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH--HHHHHHHHHHHH-hcCCcEEEehhh
Confidence 3444 489999999999999999999999999999865432 333 346788887774 346888888764
No 93
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.60 E-value=0.008 Score=57.23 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=25.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
.++|++|+||+|+|||++++.+++..+..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~ 29 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDK 29 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccc
Confidence 37899999999999999999999987653
No 94
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.59 E-value=0.007 Score=63.99 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.+.+...+--|+++||||||||++++.+++.+.
T Consensus 125 ~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 125 AIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred HHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35666666788999999999999999999887653
No 95
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.57 E-value=0.0071 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
++++|++|||||++++.+.+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988765
No 96
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.56 E-value=0.051 Score=63.93 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=69.1
Q ss_pred HHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecC-----CCChhhHHHHHHHHHHH
Q psy12736 436 LTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSR-----GYNEASFKEDLKSLYNL 499 (567)
Q Consensus 436 i~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k-----~y~~~~f~edLk~~~~~ 499 (567)
|.|+..+|.. ...|++|+|++|+||+++++-.|.-. +..+++++.+. .| ..+|.+-||.++..
T Consensus 188 i~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~-~ge~e~rl~~i~~~ 266 (821)
T CHL00095 188 IERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY-RGEFEERLKRIFDE 266 (821)
T ss_pred HHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC-ccHHHHHHHHHHHH
Confidence 4455555554 45699999999999999998666532 57888887542 33 45899999999987
Q ss_pred hccCCCcEEEEEecCccc-c----h---hhhHHhh-hccCCccc--cCcchhHHHH
Q psy12736 500 LGVKNQATVFLFTAAEIV-E----E---GYQVFTI-QLSRGYNE--ASFKEDLKSL 544 (567)
Q Consensus 500 ag~~~~~~vfl~~d~qi~-~----e---~fle~in-lL~~Gevp--~Lf~~eE~~~ 544 (567)
+ .+++++++++++-+.. . + .....+. .|..|++. +.=+.+|+..
T Consensus 267 ~-~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 267 I-QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRK 321 (821)
T ss_pred H-HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHH
Confidence 7 3456778887764321 1 1 1122233 46677765 3334555544
No 97
>PLN03025 replication factor C subunit; Provisional
Probab=95.55 E-value=0.0085 Score=62.39 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=24.9
Q ss_pred HHHHHhcC--CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++.++ .|+||+||+|||||+++..+.+.+
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444443 579999999999999999888765
No 98
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.54 E-value=0.11 Score=56.09 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=62.4
Q ss_pred EEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCC-----eEEEEEecCCCChhhHHHH--------
Q psy12736 426 LVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGY-----QVFTIQLSRGYNEASFKED-------- 492 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~-----~~~~i~~~k~y~~~~f~ed-------- 492 (567)
+++..+.++.+.+ .|. .++|++|.|++|+||+.+++..|..... .+..++++..|+..+|-+.
T Consensus 177 ~~i~e~~le~l~~---~L~-~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 177 LFIPETTIETILK---RLT-IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred ccCCHHHHHHHHH---HHh-cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 4555566666543 343 3789999999999999998866654422 2334566666666555422
Q ss_pred ------HHHHHHHhccC-CCcEEEEEecCcccc-hh-hhHHhhhccC
Q psy12736 493 ------LKSLYNLLGVK-NQATVFLFTAAEIVE-EG-YQVFTIQLSR 530 (567)
Q Consensus 493 ------Lk~~~~~ag~~-~~~~vfl~~d~qi~~-e~-fle~inlL~~ 530 (567)
+++++.+|-.+ +++.++++++-+-.+ +. |=|.+.+|..
T Consensus 253 ~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~ 299 (459)
T PRK11331 253 RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEH 299 (459)
T ss_pred EecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccc
Confidence 34556666433 478999998876665 22 3344444443
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.045 Score=62.08 Aligned_cols=77 Identities=14% Similarity=0.354 Sum_probs=47.8
Q ss_pred HHHHHhcCC-Cce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRLSR-GHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~p~-Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~ed 492 (567)
+.+.+...+ +|+ ||.|+.|+||+++++..|...+| ++++++...+.+. ++
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gV----d~ 103 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGI----DN 103 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCH----HH
Confidence 334444433 565 99999999999999977765443 2344444444454 35
Q ss_pred HHHHHHHh---ccCCCcEEEEEecCcccch
Q psy12736 493 LKSLYNLL---GVKNQATVFLFTAAEIVEE 519 (567)
Q Consensus 493 Lk~~~~~a---g~~~~~~vfl~~d~qi~~e 519 (567)
+|.++..+ -..++.-|++++|.+....
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECccccCH
Confidence 55555433 2335667888888766554
No 100
>KOG2028|consensus
Probab=95.52 E-value=0.039 Score=57.21 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCC--CeEEeccCCCCchhhHHHHHhccCCCcc--eeee-------------c-----CCCCCceEEEE
Q psy12736 181 KLTWILSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSLSPDKY--LVIA-------------E-----LPPTPAKFHYI 238 (567)
Q Consensus 181 R~~~ll~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l~~~~~--~~~~-------------e-----gPp~gkk~v~i 238 (567)
...-++..+++++. .++|-||+|||||++.+-+.++-.+..| +.+. | ---.++|-| +
T Consensus 148 ~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTi-l 226 (554)
T KOG2028|consen 148 GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTI-L 226 (554)
T ss_pred CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeE-E
Confidence 34556777887665 6788999999999999887776544433 3222 2 345667777 8
Q ss_pred e-------e-------ccc-----h---------------hhhhhccccccccccCCHHHHHHHHHH
Q psy12736 239 F-------N-------LRD-----L---------------SRIIQGLTATEKIIFNTKEMFVRAWRN 271 (567)
Q Consensus 239 F-------N-------l~D-----~---------------~R~~rg~f~~~~~~~~s~~sl~~I~~~ 271 (567)
| | ++- + .-+++ ++.++.+.....+.+..|..+
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlS-RC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLS-RCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred EeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHh-ccceeEeccCCHHHHHHHHHH
Confidence 8 3 110 0 04556 677777777777777766654
No 101
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.48 E-value=0.066 Score=55.24 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=43.3
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcC-----CeEEEEEecCCCChhhHHHHHHHHHHHhccC-CCcEEEEEecCcccch
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAG-----YQVFTIQLSRGYNEASFKEDLKSLYNLLGVK-NQATVFLFTAAEIVEE 519 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~-----~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~-~~~~vfl~~d~qi~~e 519 (567)
.|++|.|++|+||+++++..+.... ..+..+..+...+...+++.++......-.. ..+-++++++.+-...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 4799999999999999987765432 1233443333344444556666655433222 3355677777655444
No 102
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.47 E-value=0.04 Score=63.75 Aligned_cols=100 Identities=16% Similarity=0.292 Sum_probs=64.3
Q ss_pred HHHHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHH----------cCCeEEEEEecCC---CC-hhhHHHHHHHHHHHh
Q psy12736 436 LTRIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFA----------AGYQVFTIQLSRG---YN-EASFKEDLKSLYNLL 500 (567)
Q Consensus 436 i~ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i----------~~~~~~~i~~~k~---y~-~~~f~edLk~~~~~a 500 (567)
+.++.++|... ..|.||+|++|+||+.+++..|.- .++.++.+.++.- .. ..+|.+-+++++..+
T Consensus 195 i~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l 274 (758)
T PRK11034 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL 274 (758)
T ss_pred HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH
Confidence 34444555553 568899999999999999987753 3666776654321 11 236778888887765
Q ss_pred ccCCCcEEEEEecCccc---------chhhhHHhh-hccCCccccC
Q psy12736 501 GVKNQATVFLFTAAEIV---------EEGYQVFTI-QLSRGYNEAS 536 (567)
Q Consensus 501 g~~~~~~vfl~~d~qi~---------~e~fle~in-lL~~Gevp~L 536 (567)
- +..+.+++++|-+-. ...+...+. +|+.|++.=+
T Consensus 275 ~-~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vI 319 (758)
T PRK11034 275 E-QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319 (758)
T ss_pred H-hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 3 345667777775532 123344466 7888987643
No 103
>PRK06526 transposase; Provisional
Probab=95.47 E-value=0.0087 Score=60.25 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++..+.+++++||+|||||.++..+....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 55688999999999999999999876654
No 104
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.43 E-value=0.11 Score=54.92 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.7
Q ss_pred CCceEEeccCCCcHhHHHHHHHHH
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i 470 (567)
.+++++.|++|+||+++++.++.-
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999887653
No 105
>PRK08181 transposase; Validated
Probab=95.42 E-value=0.016 Score=58.86 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-.+.++..+.+++|+||+|||||.++..+....
T Consensus 98 ~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 98 AGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred HHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 344577889999999999999999999887654
No 106
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.41 E-value=0.0086 Score=58.32 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+.++.-.++.||||||||.++..++..+
T Consensus 11 ~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 11 QSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 4444444458999999999999999988776
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.40 E-value=0.012 Score=61.45 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=27.6
Q ss_pred HHHHHhcCC--CeEEeccCCCCchhhHHHHHhccC
Q psy12736 186 LSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 186 l~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..++.++. |++++||+|||||++++.+.+.+.
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 455666777 899999999999999999888764
No 108
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.11 Score=58.95 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=65.5
Q ss_pred HHHHHhcC-CCc-eEEeccCCCcHhHHHHHHHHHcCCe--------------------------------EEEEEecCCC
Q psy12736 439 IHRALRLS-RGH-CMVVGVEGGGKRSLVRLASFAAGYQ--------------------------------VFTIQLSRGY 484 (567)
Q Consensus 439 i~RvL~~p-~Gh-~LLvG~~GsGr~sl~rlaa~i~~~~--------------------------------~~~i~~~k~y 484 (567)
+.+.++.. -.| .|+.|+.|+||+++++.-|...+|+ +..++-....
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~ 107 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN 107 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccC
Confidence 44556553 346 5799999999999999888776663 1222222223
Q ss_pred ChhhHHHHHHHHHHHh---ccCCCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccce
Q psy12736 485 NEASFKEDLKSLYNLL---GVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQAT 555 (567)
Q Consensus 485 ~~~~f~edLk~~~~~a---g~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~ 555 (567)
+. ++++.+.... ...+..-|+++.+.+-... +..| ||..=| +-=+|..++..+|. ..++..+.
T Consensus 108 ~v----d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---~a~naLLK~LEePp~~tv~IL~t~~~~kLl-~TI~SRc~ 179 (620)
T PRK14954 108 SV----DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---AAFNAFLKTLEEPPPHAIFIFATTELHKIP-ATIASRCQ 179 (620)
T ss_pred CH----HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---HHHHHHHHHHhCCCCCeEEEEEeCChhhhh-HHHHhhce
Confidence 34 3454444333 4555566777777655443 2344 444322 22245556777886 67777766
Q ss_pred eeee
Q psy12736 556 VFLF 559 (567)
Q Consensus 556 ~~~~ 559 (567)
++-+
T Consensus 180 ~vef 183 (620)
T PRK14954 180 RFNF 183 (620)
T ss_pred EEec
Confidence 6554
No 109
>PRK04195 replication factor C large subunit; Provisional
Probab=95.36 E-value=0.011 Score=65.31 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=37.4
Q ss_pred CccccccCcchhhHHHHHHHHHhc--CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 169 FGDILVPTTDSTKLTWILSLMNEI--KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 169 ~~~i~VpT~dtvR~~~ll~~ll~~--~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.+++.+.....+..-++..+... .+++||+||+|||||++++.+.+.+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 556666655555666666665532 57899999999999999999988764
No 110
>PRK13764 ATPase; Provisional
Probab=95.34 E-value=0.012 Score=65.92 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=36.6
Q ss_pred ccCcchhhHH-HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 174 VPTTDSTKLT-WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 174 VpT~dtvR~~-~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
.||.|..... .+++.+...+..+|++||||||||++++.++..++...
T Consensus 237 ~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~ 285 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADMG 285 (602)
T ss_pred CCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4454444432 56777888899999999999999999999888776443
No 111
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.33 E-value=0.02 Score=59.46 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=36.7
Q ss_pred CcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 176 TTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 176 T~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
|.+.....| +..++.+++++++||+||||||++++.++.-.+++.
T Consensus 127 t~~~~~~ay-L~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~ 171 (312)
T COG0630 127 TISPEQAAY-LWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEE 171 (312)
T ss_pred CCCHHHHHH-HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchh
Confidence 444444444 778889999999999999999999999999887653
No 112
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.32 E-value=0.0086 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=19.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++.++++|++|||||++++.++..+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999887654
No 113
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.27 E-value=0.028 Score=52.95 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 180 TKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 180 vR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.+....++.+.....|||++|++||||+.+++.+-+.
T Consensus 9 ~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 9 KRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp HHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3455566777788999999999999999999887664
No 114
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.26 E-value=0.014 Score=55.10 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=54.5
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCC----eEEEEEecCCCChhhHHHHHHHHHHHh----ccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGY----QVFTIQLSRGYNEASFKEDLKSLYNLL----GVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~----~~~~i~~~k~y~~~~f~edLk~~~~~a----g~~~~~~vfl~~d~qi 516 (567)
.|.+++||+|++|+||+.+++..|-+... .+..++.+.--...+...-+.+.+-.+ |..... |+++++-+-
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g-VVllDEidK 79 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG-VVLLDEIDK 79 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT-EEEEETGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh-hhhhHHHhh
Confidence 48899999999999999999988887774 677777653212111111122222222 111112 777787776
Q ss_pred cch-----------hhhHHhh-hccCCccc
Q psy12736 517 VEE-----------GYQVFTI-QLSRGYNE 534 (567)
Q Consensus 517 ~~e-----------~fle~in-lL~~Gevp 534 (567)
... .+...+= +|..|.+.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~ 109 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLT 109 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEE
T ss_pred ccccccccchhhHHHHHHHHHHHhccccee
Confidence 677 7776666 77777665
No 115
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.25 E-value=0.015 Score=61.21 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.+.+...+..++++||||||||++++.++..++
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34455556678899999999999999999888765
No 116
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.23 E-value=0.011 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++++||||||||+++..++..++
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999888764
No 117
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.095 Score=58.86 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcC------------------------CeEEEEEecCCCChhhHHHHHHHHHHHhc
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAG------------------------YQVFTIQLSRGYNEASFKEDLKSLYNLLG 501 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~------------------------~~~~~i~~~k~y~~~~f~edLk~~~~~ag 501 (567)
.+|+ |+.|+.|+||+++++..|...+ .+++++....+-+..+.++ +..-...+-
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p 115 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAP 115 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCc
Confidence 4786 7799999999999998876543 2456665554455554443 333333444
Q ss_pred cCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccceeeee
Q psy12736 502 VKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 502 ~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
..++.-|+++++.+...+ +..| ||.+=|-| =++...+.+.|. ..++..+..+-+
T Consensus 116 ~~~~~kViIIDE~~~Lt~---~a~naLLKtLEepp~~~ifIlatt~~~ki~-~tI~SRc~~~~f 175 (559)
T PRK05563 116 SEAKYKVYIIDEVHMLST---GAFNALLKTLEEPPAHVIFILATTEPHKIP-ATILSRCQRFDF 175 (559)
T ss_pred ccCCeEEEEEECcccCCH---HHHHHHHHHhcCCCCCeEEEEEeCChhhCc-HHHHhHheEEec
Confidence 567777888888665544 3456 65433322 145556667775 666666555544
No 118
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.012 Score=60.02 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+-++||+||||||||.+.+.+-+.++
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 467999999999999999988877664
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.19 E-value=0.01 Score=59.97 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|++|.||||||||++++.+-+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999998876654
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.18 E-value=0.038 Score=59.27 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=48.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
|..++||.|++|+||++++|..|.-.+..++.+..+. .|- .+-..-++.++..|. ...|.+++++|-+-
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~-g~~~~~i~~~f~~a~-~~~p~IlfiDEiD~ 235 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI-GEGARLVRELFELAR-EKAPSIIFIDEIDA 235 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc-cchHHHHHHHHHHHH-hcCCeEEEEechhh
Confidence 4456999999999999999999999998888875432 121 111234566776664 45688888887554
No 121
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.18 E-value=0.055 Score=59.90 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=46.9
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC----CChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG----YNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~----y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.++||.|++|+||++++|..|.-++..++.+..+.- .+.. ...++.++..|- ...|.+++++|-
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~--~~~l~~~f~~a~-~~~p~Il~iDEi 156 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG--ASRVRDLFEQAK-KNAPCIIFIDEI 156 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhccc--HHHHHHHHHHHH-hcCCCEEEEech
Confidence 359999999999999999999999999888764320 1111 245777777763 456788888764
No 122
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.17 E-value=0.022 Score=56.65 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=29.4
Q ss_pred ccccCcchhhHHHHHHHHH--hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 172 ILVPTTDSTKLTWILSLMN--EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 172 i~VpT~dtvR~~~ll~~ll--~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-+|+..... .-..+..+. ..+.+++++||+|||||.+++.+.+..
T Consensus 23 ~f~~~~n~~-a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 23 SFYPGDNDS-LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred ccccCccHH-HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344443333 333444443 244689999999999999998876654
No 123
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.14 E-value=0.012 Score=56.29 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=24.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.++.++|+||+|+|||++++.+++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4678999999999999999999988654
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.13 Score=58.32 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=69.8
Q ss_pred EEecHHHHHHHHHHHHHHhcCC--CceEEeccCCCcHhHHHHHHHHHcCC--------------------------eEEE
Q psy12736 426 LVLFEDAREHLTRIHRALRLSR--GHCMVVGVEGGGKRSLVRLASFAAGY--------------------------QVFT 477 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p~--Gh~LLvG~~GsGr~sl~rlaa~i~~~--------------------------~~~~ 477 (567)
++-.++++..+ .+.++..+ .++||.|+.|+||+++++..|...+| ++++
T Consensus 18 liGq~~i~~~L---~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 18 LVGQEAIATTL---KNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred ccChHHHHHHH---HHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 33334444444 44444432 24589999999999999988777655 3444
Q ss_pred EEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhcc
Q psy12736 478 IQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVK 551 (567)
Q Consensus 478 i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~ 551 (567)
++-....+..+.++-+..+ ..+...+..-|+++++.+-..+ +..| ||..=|-| =++...+.+.+. ..++
T Consensus 95 i~~~~~~~vd~IReii~~a-~~~p~~~~~KViIIDEad~Lt~---~a~naLLK~LEePp~~tvfIL~t~~~~~ll-pTIr 169 (620)
T PRK14948 95 IDAASNTGVDNIRELIERA-QFAPVQARWKVYVIDECHMLST---AAFNALLKTLEEPPPRVVFVLATTDPQRVL-PTII 169 (620)
T ss_pred EeccccCCHHHHHHHHHHH-hhChhcCCceEEEEECccccCH---HHHHHHHHHHhcCCcCeEEEEEeCChhhhh-HHHH
Confidence 5444445555444433322 2333445667788888776554 3345 54432222 234334455565 6666
Q ss_pred ccceeeee
Q psy12736 552 NQATVFLF 559 (567)
Q Consensus 552 ~~~~~~~~ 559 (567)
..+..+-+
T Consensus 170 SRc~~~~f 177 (620)
T PRK14948 170 SRCQRFDF 177 (620)
T ss_pred hheeEEEe
Confidence 66666543
No 125
>KOG0743|consensus
Probab=95.11 E-value=0.045 Score=58.40 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=44.1
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEec
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d 513 (567)
-||-|++|+||.|+.--.|--.+|.++-++++...+.. |||.+|..+ .++.+++ ++|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~----dLr~LL~~t--~~kSIiv-IED 294 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS----DLRHLLLAT--PNKSILL-IED 294 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH----HHHHHHHhC--CCCcEEE-Eee
Confidence 48999999999999876676778999999998665543 699999887 4555554 444
No 126
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.015 Score=62.32 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.-+..--..++++|++||||||||++++++-.=+++
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCC
Confidence 334445578999999999999999999987554444
No 127
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.10 E-value=0.022 Score=51.55 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 179 STKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 179 tvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..+..--++.+...+.||+++|++||||+.+++.+-.
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 3455566777888999999999999999998876544
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.072 Score=59.37 Aligned_cols=69 Identities=13% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHHHHHHHHh-
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDLKSLYNLL- 500 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edLk~~~~~a- 500 (567)
-.|+ |+.|+.|+||+++++.-|...+| ++++++...+.+. +++|.++..+
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~v----d~ir~l~~~~~ 112 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQV----DAMRELLDNAQ 112 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCH----HHHHHHHHHHh
Confidence 4687 89999999999999998876655 2344443333344 4555554433
Q ss_pred --ccCCCcEEEEEecCcccch
Q psy12736 501 --GVKNQATVFLFTAAEIVEE 519 (567)
Q Consensus 501 --g~~~~~~vfl~~d~qi~~e 519 (567)
...++.-|+++++.+-...
T Consensus 113 ~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 113 YAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred hCcccCCceEEEEcCcccCCH
Confidence 3456677888888665543
No 129
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.09 E-value=0.012 Score=58.28 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.-++||+.||||||||++.+.+-+..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhccc
Confidence 35799999999999999998877654
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.17 Score=55.89 Aligned_cols=111 Identities=13% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHHHHHHHHhc
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDLKSLYNLLG 501 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edLk~~~~~ag 501 (567)
-+|+ ||.|+.|+||++++++.|...+| ++++++.+.+-+..+.+ +++..+....
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P 115 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTP 115 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCc
Confidence 3576 68999999999999998776543 24455444444554444 3555556666
Q ss_pred cCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 502 VKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 502 ~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
..++.-|+++++.+.....-.+.+- .|.. +.+-=++...+.+.|. ..++..+..+-+
T Consensus 116 ~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~-~tI~SRc~~i~f 175 (486)
T PRK14953 116 IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP-PTILSRCQRFIF 175 (486)
T ss_pred ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH-HHHHHhceEEEc
Confidence 6778888999887765543322222 2322 1222344555666665 566655554443
No 131
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.05 E-value=0.017 Score=63.94 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=33.7
Q ss_pred CccccccCcchhhHHHHHHHHHhc---CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 169 FGDILVPTTDSTKLTWILSLMNEI---KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 169 ~~~i~VpT~dtvR~~~ll~~ll~~---~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..++.|...-......+++..+.. ++-+||+||+|||||++|+-+.+.+.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345666655445555555554433 24578899999999999988877653
No 132
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.03 E-value=0.025 Score=59.46 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
....++..+++.+.+++++|++|+|||++++.++..+++.
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~ 205 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPD 205 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCC
Confidence 3456678889999999999999999999999888766543
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.1 Score=58.41 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHhc-CCCce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHH
Q psy12736 440 HRALRL-SRGHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDL 493 (567)
Q Consensus 440 ~RvL~~-p~Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edL 493 (567)
.+.++. ..+|+ |+.|+.|+||+++++..|....| ++++++-....+..+.++ +
T Consensus 29 ~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe-I 107 (605)
T PRK05896 29 VNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN-I 107 (605)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH-H
Confidence 334444 23564 68999999999999988776543 334444333455554443 2
Q ss_pred HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 494 KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
...+......++.-|+++++.+....+ ..| ||.. +.+--++...+...|. ..++..+.++-+
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~---A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl-~TI~SRcq~ieF 175 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTS---AWNALLKTLEEPPKHVVFIFATTEFQKIP-LTIISRCQRYNF 175 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHH---HHHHHHHHHHhCCCcEEEEEECCChHhhh-HHHHhhhhhccc
Confidence 233333444445556888876655443 234 4332 1111234445566665 555555554443
No 134
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.02 E-value=0.018 Score=61.13 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+++.++..+-.++++||||||||++++.+++.+.
T Consensus 140 ~~~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 140 DLFNSLLPAAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35666666777899999999999999999887653
No 135
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.01 E-value=0.012 Score=55.49 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.5
Q ss_pred CeEEeccCCCCchhhHHHHHhccCC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+++|+|++|+|||++++.++..+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999988753
No 136
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.01 E-value=0.018 Score=58.39 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=34.0
Q ss_pred cccCcchhhHHHHHHHHHhcCC-CeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 173 LVPTTDSTKLTWILSLMNEIKR-PCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 173 ~VpT~dtvR~~~ll~~ll~~~~-pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
-|||.+-...--++..++...+ =||++||||||||+++..++..++..
T Consensus 104 ~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 104 KIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred cCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 3555555555555666665544 57788999999999999998876543
No 137
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.052 Score=57.11 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHhcC--CCeEEeccCCCCchhhHHHHHhccCCCcceeee-------------c----CCCCCceEEEEe------
Q psy12736 185 ILSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA-------------E----LPPTPAKFHYIF------ 239 (567)
Q Consensus 185 ll~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~-------------e----gPp~gkk~v~iF------ 239 (567)
.+..+++++ .+.+|-||||||||++.+-+-... +..|..++ | .--.|++.| +|
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~ti-LflDEIHR 115 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-NAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTI-LFLDEIHR 115 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-CCceEEeccccccHHHHHHHHHHHHHHHhcCCceE-EEEehhhh
Confidence 345666644 489999999999999886555443 34455444 1 223488888 88
Q ss_pred -e-------ccchh--------------------hhhhccccccccccCCHHHHHHHHHH
Q psy12736 240 -N-------LRDLS--------------------RIIQGLTATEKIIFNTKEMFVRAWRN 271 (567)
Q Consensus 240 -N-------l~D~~--------------------R~~rg~f~~~~~~~~s~~sl~~I~~~ 271 (567)
| ++-+. -+++ +..++.+...+.+++..+...
T Consensus 116 fnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlS-R~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 116 FNKAQQDALLPHVENGTIILIGATTENPSFELNPALLS-RARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred cChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhh-hhheeeeecCCHHHHHHHHHH
Confidence 3 11110 4455 677788888888888887776
No 138
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.99 E-value=0.025 Score=59.14 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.....+...+..+.|+||.||||||||++++.+-+.+.
T Consensus 31 ~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 31 EVIELALLALLAGGHVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhC
Confidence 34445556677899999999999999999999888765
No 139
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.99 E-value=0.027 Score=60.22 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcC--CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 181 KLTWILSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 181 R~~~ll~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+....+...+..+ .+++++||+|||||++++.+++.+.
T Consensus 41 ~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 41 ELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444445433 5699999999999999999998764
No 140
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.97 E-value=0.02 Score=53.44 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+++. +-++|+|++|+|||++++.++...
T Consensus 29 l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 29 LKELLKG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3345554 999999999999999999998753
No 141
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.95 E-value=0.026 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=26.7
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+.+...+--++++||||||||++++.++..+++
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3333345557999999999999999999988754
No 142
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.088 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.||+||+|||||++++.+.+.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 79999999999999999888765
No 143
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=0.15 Score=54.67 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=58.8
Q ss_pred Cce-EEeccCCCcHhHHHHHHHHHcCCe-----------------------EEEEEec-CCCChhhHHHHHHHHHHHhcc
Q psy12736 448 GHC-MVVGVEGGGKRSLVRLASFAAGYQ-----------------------VFTIQLS-RGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 448 Gh~-LLvG~~GsGr~sl~rlaa~i~~~~-----------------------~~~i~~~-k~y~~~~f~edLk~~~~~ag~ 502 (567)
+|+ |+.|++|+||+++++..|....|+ ++.+... +..+..+.|+-. ........
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p~ 114 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELV-TIAARRPS 114 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHH-HHHHhCcc
Confidence 575 799999999999998876543332 2333322 335555444322 22222334
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeee
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
.++.-|++++|.+-.++.. .| ||..=| +.-+......+.|. ..++..+..+-+
T Consensus 115 ~~~~kViiIDead~m~~~a---anaLLk~LEep~~~~~fIL~a~~~~~ll-pTIrSRc~~i~f 173 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA---ANALLKAVEEPPPRTVWLLCAPSPEDVL-PTIRSRCRHVAL 173 (394)
T ss_pred cCCcEEEEEechhhcCHHH---HHHHHHHhhcCCCCCeEEEEECChHHCh-HHHHhhCeEEEC
Confidence 5666788888877666543 35 443212 22344444455664 566655555544
No 144
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.91 E-value=0.018 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.4
Q ss_pred CeEEeccCCCCchhhHHHHHhccCC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
++.++||+|+|||++++.+.+.++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999998877643
No 145
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.90 E-value=0.032 Score=54.93 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=23.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.|++++||+|||||.+++.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999887654
No 146
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.90 E-value=0.015 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.8
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
|+|.|++|||||++++.+-+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988775
No 147
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.90 E-value=0.035 Score=49.62 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=25.2
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN 485 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~ 485 (567)
|+||.|++|.||+++++..|...+.++-.|+.+.+.-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdll 37 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLL 37 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCC
Confidence 8999999999999999999999999999998775433
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.14 Score=57.83 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=74.6
Q ss_pred eEEecHHHHHHHHHHHHHHhcCC-Cc-eEEeccCCCcHhHHHHHHHHHcCCe----------------------------
Q psy12736 425 DLVLFEDAREHLTRIHRALRLSR-GH-CMVVGVEGGGKRSLVRLASFAAGYQ---------------------------- 474 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~~p~-Gh-~LLvG~~GsGr~sl~rlaa~i~~~~---------------------------- 474 (567)
+++--+.+++++.+. +...+ .| +||.|+.|+||+++++..|...+|+
T Consensus 25 dliGq~~~v~~L~~~---~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 25 DLIGQEAMVRTLTNA---FETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 344445556665554 33322 34 6899999999999999888765543
Q ss_pred -EEEEEecCCCChhhHHHHHHHHHHHh---ccCCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHH
Q psy12736 475 -VFTIQLSRGYNEASFKEDLKSLYNLL---GVKNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSL 544 (567)
Q Consensus 475 -~~~i~~~k~y~~~~f~edLk~~~~~a---g~~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~ 544 (567)
++++...+..+.. |+|.++..+ ...+..-|+++.+.+.... +..| ||.+ +.+-=+|...+.++
T Consensus 102 Dv~e~~a~s~~gvd----~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 102 DVLEMDAASHTGVD----DIREIIESVRYRPVSARYKVYIIDEVHMLST---AAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred ceEEecccccCCHH----HHHHHHHHHHhchhcCCcEEEEEEChHhCCH---HHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2333333444554 444444333 3455566777887666554 3455 5543 33334677778888
Q ss_pred HHHhhccccceeeee
Q psy12736 545 YNLLGVKNQATVFLF 559 (567)
Q Consensus 545 i~~~~~~~~~~~~~~ 559 (567)
+. ..++..+..+-+
T Consensus 175 ll-~tI~SRcq~~~f 188 (598)
T PRK09111 175 VP-VTVLSRCQRFDL 188 (598)
T ss_pred hh-HHHHhheeEEEe
Confidence 76 677777766544
No 149
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.87 E-value=0.016 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.6
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|+||.||||+|||+++.-+-+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 799999999999999877766654
No 150
>PHA02244 ATPase-like protein
Probab=94.84 E-value=0.075 Score=56.03 Aligned_cols=89 Identities=10% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC-CCC-------hhhHHHHHHHHHHHhccCCCcEE
Q psy12736 437 TRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR-GYN-------EASFKEDLKSLYNLLGVKNQATV 508 (567)
Q Consensus 437 ~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k-~y~-------~~~f~edLk~~~~~ag~~~~~~v 508 (567)
.++.|++.. +-++||.|++|+||+++++..|...+..++.++..- .+. ...|.+ .-+.+|- .+.-+
T Consensus 110 ~ri~r~l~~-~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~d---gpLl~A~--~~Ggv 183 (383)
T PHA02244 110 ADIAKIVNA-NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHE---TPFYEAF--KKGGL 183 (383)
T ss_pred HHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccc---hHHHHHh--hcCCE
Confidence 366777665 568999999999999999999999999988876210 000 001211 1122221 23347
Q ss_pred EEEecCcccchhhhHHhh-hccCC
Q psy12736 509 FLFTAAEIVEEGYQVFTI-QLSRG 531 (567)
Q Consensus 509 fl~~d~qi~~e~fle~in-lL~~G 531 (567)
++++|-+...++-+.-+| +|..+
T Consensus 184 LiLDEId~a~p~vq~~L~~lLd~r 207 (383)
T PHA02244 184 FFIDEIDASIPEALIIINSAIANK 207 (383)
T ss_pred EEEeCcCcCCHHHHHHHHHHhccC
Confidence 788888777788888888 88655
No 151
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.84 E-value=0.017 Score=54.52 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
|+.++++||+|||||++++.+....+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 567899999999999999988886543
No 152
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=94.83 E-value=0.49 Score=46.93 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=73.5
Q ss_pred eEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCC
Q psy12736 425 DLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKN 504 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~ 504 (567)
.+|+.+-.=.-..-|...|.+..|.+ +.|+.|+||++.+|-.|.+.|..++..+.+...+......-++.+.. +
T Consensus 11 rlv~Tplt~r~~~~l~~al~~~~~~~-~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~-~---- 84 (231)
T PF12774_consen 11 RLVITPLTDRCFLTLTQALSLNLGGA-LSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ-S---- 84 (231)
T ss_dssp -----HHHHHHHHHHHHHHCTTTEEE-EESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH-H----
T ss_pred CceechHHHHHHHHHHHHhccCCCCC-CcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh-c----
Confidence 56665555455556777787766665 79999999999999999999999999999988887644443333332 2
Q ss_pred CcEEEEEecCcccchhhhHHhhhccCCccccCcchhHHHHHHHhhccccceeeeeecc
Q psy12736 505 QATVFLFTAAEIVEEGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 562 (567)
Q Consensus 505 ~~~vfl~~d~qi~~e~fle~inlL~~Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~~~~ 562 (567)
..+.+|++-+-.+.+.|-.|- +.+..|. ..+++....+-+.|.
T Consensus 85 -GaW~cfdefnrl~~~vLS~i~-------------~~i~~i~-~al~~~~~~~~~~g~ 127 (231)
T PF12774_consen 85 -GAWLCFDEFNRLSEEVLSVIS-------------QQIQSIQ-DALRAKQKSFTLEGQ 127 (231)
T ss_dssp -T-EEEEETCCCSSHHHHHHHH-------------HHHHHHH-HHHHCTSSEEEETTC
T ss_pred -CchhhhhhhhhhhHHHHHHHH-------------HHHHHHH-HhhcccccccccCCC
Confidence 367888888877776666543 3344454 555555554444443
No 153
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.83 E-value=0.063 Score=56.18 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhh------HHHHHHH--HH-HHhcc--CCCcEEEEEecC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEAS------FKEDLKS--LY-NLLGV--KNQATVFLFTAA 514 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~------f~edLk~--~~-~~ag~--~~~~~vfl~~d~ 514 (567)
-+||+||.|++|+||+.+++..|...+.+++.|..+.....++ +...++. .. ..-|- .+..+++++++-
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 4899999999999999999999999999999999998765432 2222110 00 00011 111136777776
Q ss_pred cccchhhhHHhh-hccC
Q psy12736 515 EIVEEGYQVFTI-QLSR 530 (567)
Q Consensus 515 qi~~e~fle~in-lL~~ 530 (567)
.-.++.+.-.+. .|..
T Consensus 122 nra~p~~q~aLl~~l~e 138 (329)
T COG0714 122 NRAPPEVQNALLEALEE 138 (329)
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 666776766666 6654
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.81 E-value=0.013 Score=55.66 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..++++++++++.||+|||||.++..+.+.+.
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 45677899999999999999999998887653
No 155
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.81 E-value=0.019 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|+++|++|+|||+++++++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997644
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.78 E-value=0.16 Score=57.11 Aligned_cols=117 Identities=13% Similarity=0.138 Sum_probs=71.8
Q ss_pred HHHHHhcC-CCc-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHH
Q psy12736 439 IHRALRLS-RGH-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKED 492 (567)
Q Consensus 439 i~RvL~~p-~Gh-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~ed 492 (567)
+.+.++.. -+| .|+.|+.|+||+++++..|...++ ++..+.-..+.+..+.++
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~- 106 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQ- 106 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHH-
Confidence 33334432 346 589999999999999988776554 233343222345554443
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccc-----cCcchhHHHHHHHhhccccceeeeee
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE-----ASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp-----~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
++.-+......++.-|+++.+.+.... +..| ||..-|-| =+|...+..+|. ..++..+.++-+.
T Consensus 107 l~e~~~~~p~~~~~KVvIIDEa~~Ls~---~a~naLLK~LEepp~~~vfI~~tte~~kL~-~tI~SRc~~~~f~ 176 (563)
T PRK06647 107 IKEEIMFPPASSRYRVYIIDEVHMLSN---SAFNALLKTIEEPPPYIVFIFATTEVHKLP-ATIKSRCQHFNFR 176 (563)
T ss_pred HHHHHHhchhcCCCEEEEEEChhhcCH---HHHHHHHHhhccCCCCEEEEEecCChHHhH-HHHHHhceEEEec
Confidence 222223344456677788888776655 3567 77665532 246677788886 7788777766554
No 157
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.78 E-value=0.02 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.594 Sum_probs=23.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+++++|+||+|+||+++++.++...+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 67999999999999999999998864
No 158
>KOG2004|consensus
Probab=94.77 E-value=0.097 Score=58.70 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCCceE-EeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHH-----------HHHHHHHHH
Q psy12736 432 AREHLTRIHRALRLSRGHCM-VVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFK-----------EDLKSLYNL 499 (567)
Q Consensus 432 ai~hi~ri~RvL~~p~Gh~L-LvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~-----------edLk~~~~~ 499 (567)
.+|+|+ +++.-..-+|.+| ++|++|.||+|+.|=.|...|.++|++.+.---+..|-+ --+=++|++
T Consensus 423 ILEfiA-V~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~ 501 (906)
T KOG2004|consen 423 ILEFIA-VGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKK 501 (906)
T ss_pred HHHHHH-HHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHh
Confidence 355553 4444445678775 999999999999999999999999999887433333222 113368889
Q ss_pred hccCCCcEEEE
Q psy12736 500 LGVKNQATVFL 510 (567)
Q Consensus 500 ag~~~~~~vfl 510 (567)
+|++| |++++
T Consensus 502 v~t~N-PliLi 511 (906)
T KOG2004|consen 502 VKTEN-PLILI 511 (906)
T ss_pred hCCCC-ceEEe
Confidence 99765 66655
No 159
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.76 E-value=0.019 Score=44.55 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=20.1
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.-++++||+|+|||+++..+.--+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999998765433
No 160
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.72 E-value=0.03 Score=59.18 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcC--CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 182 LTWILSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 182 ~~~ll~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
....+...+..+ .+++++||+|||||++++.+++.+.
T Consensus 27 l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 27 LAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred HHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444445443 5799999999999999999988764
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.70 E-value=0.02 Score=59.08 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHhcC--CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 186 LSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 186 l~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..+++.+ .|++++||+|||||++++.+.+.+.
T Consensus 29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 44445544 3699999999999999999988764
No 162
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.70 E-value=0.057 Score=57.31 Aligned_cols=66 Identities=12% Similarity=0.243 Sum_probs=44.7
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.++||.|++|+||+++++..|.-.+..++.+..+. .|- .+-..-++.++..|. .+.|.+++++|-+
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~-g~~~~~i~~~f~~a~-~~~p~il~iDEiD 225 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYI-GEGARLVREIFELAK-EKAPSIIFIDEID 225 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhh-hHHHHHHHHHHHHHH-hcCCcEEEhhhhh
Confidence 34999999999999999999999888887764221 110 111123556666554 4568888887643
No 163
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.14 Score=55.06 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHhcC-CCc-eEEeccCCCcHhHHHHHHHHHcCCe--------------------------------EEEEEecCCCC
Q psy12736 440 HRALRLS-RGH-CMVVGVEGGGKRSLVRLASFAAGYQ--------------------------------VFTIQLSRGYN 485 (567)
Q Consensus 440 ~RvL~~p-~Gh-~LLvG~~GsGr~sl~rlaa~i~~~~--------------------------------~~~i~~~k~y~ 485 (567)
.+.++.. -.| .|+.|++|+||+++++..|....++ +..++-....+
T Consensus 29 ~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~ 108 (397)
T PRK14955 29 QNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS 108 (397)
T ss_pred HHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCC
Confidence 4445542 346 5789999999999999888766552 22232222223
Q ss_pred hhhHHHHHHHHHHHh---ccCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceee
Q psy12736 486 EASFKEDLKSLYNLL---GVKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVF 557 (567)
Q Consensus 486 ~~~f~edLk~~~~~a---g~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~ 557 (567)
. ++++.+...+ ...+..-|+++.+.+-....-.+.+- .|.. +..-=+|..++..++. ..++..+.++
T Consensus 109 i----d~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~-~tl~sR~~~v 181 (397)
T PRK14955 109 V----DDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP-ATIASRCQRF 181 (397)
T ss_pred H----HHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH-HHHHHHHHHh
Confidence 3 4455544444 55666677888876655542222222 2221 1111234455666775 5565554433
No 164
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.036 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|..++|+||+|+|||++++.++...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999999876
No 165
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.66 E-value=0.15 Score=59.70 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=46.5
Q ss_pred CC-ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHH-----------HHHHHHHHHhccCCCcEEEEEecC
Q psy12736 447 RG-HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFK-----------EDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 447 ~G-h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~-----------edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
+| +++|+|++|+||+++++..|...+..++.+..+...+.++.+ ..+.+.+..|+. ..| |+++++-
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~-~~~-villDEi 423 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT-KNP-LFLLDEI 423 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc-CCC-EEEEech
Confidence 44 689999999999999999999989999888765332222221 234566777764 335 5677764
Q ss_pred c
Q psy12736 515 E 515 (567)
Q Consensus 515 q 515 (567)
+
T Consensus 424 d 424 (775)
T TIGR00763 424 D 424 (775)
T ss_pred h
Confidence 3
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.019 Score=59.48 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+-|||.||||||||++++..-++
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.63 E-value=0.067 Score=57.46 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
|..++||.|++|+||+++++..|.-.+..++.+..+. .|- .+-...++.++..|. ...|.+++++|-
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~-ge~~~~lr~lf~~A~-~~~P~ILfIDEI 247 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL-GEGPRMVRDVFRLAR-ENAPSIIFIDEV 247 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc-chhHHHHHHHHHHHH-hcCCeEEEEECH
Confidence 3456899999999999999999999998888875321 111 111234566666663 567888888873
No 168
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.59 E-value=0.025 Score=56.26 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.3
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.|+.....+.++|++|||||+++..+|..+.
T Consensus 6 ~~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 6 RNSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred hhHhcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 356677778899999999999999999998764
No 169
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.59 E-value=0.11 Score=55.84 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhcc---CCCcEEEEEecCc
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGV---KNQATVFLFTAAE 515 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~---~~~~~vfl~~d~q 515 (567)
.||+||+|++|+||++++|..|...+..+..++.+ .+|--.+-..-|..++..+.. ...+-++++++-+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEId 191 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEID 191 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccc
Confidence 58999999999999999999998888777666533 234222222234444443321 2344466666655
No 170
>PRK06893 DNA replication initiation factor; Validated
Probab=94.58 E-value=0.045 Score=54.15 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=20.9
Q ss_pred cCCC-eEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRP-CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~p-vLl~GptGtGKT~~i~~~l~~l 217 (567)
...| ++|+||+|||||.++...-+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445 5899999999999998877653
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.56 E-value=0.02 Score=58.73 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.|+++.||||||||++++.+.+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999997665543
No 172
>PF05729 NACHT: NACHT domain
Probab=94.53 E-value=0.02 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+.++++|++|+|||++++.+...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh
Confidence 35899999999999999998877654
No 173
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.51 E-value=0.02 Score=55.24 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..|.-+.++||+|||||++++.+...++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678899999999999999998888765
No 174
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.49 E-value=0.025 Score=54.04 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.|+||+|||||++++.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 5689999999999999999886554
No 175
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.48 E-value=0.038 Score=57.81 Aligned_cols=51 Identities=29% Similarity=0.341 Sum_probs=39.4
Q ss_pred ccccccCcchhhHHHHHHHHHhc----CCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 170 GDILVPTTDSTKLTWILSLMNEI----KRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 170 ~~i~VpT~dtvR~~~ll~~ll~~----~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
.+=+|=-.+.-+...++-.+++. |+.+|++||||||||+++..+-+.|-++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 34567777778888888888864 6799999999999999999998887644
No 176
>CHL00181 cbbX CbbX; Provisional
Probab=94.48 E-value=0.021 Score=58.63 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.|++|.||||||||++++.+-..+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998886543
No 177
>PRK09183 transposase/IS protein; Provisional
Probab=94.46 E-value=0.023 Score=57.47 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..+.+++++||+|||||.++..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 567899999999999999999987554
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.2 Score=56.58 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=66.4
Q ss_pred Cce-EEeccCCCcHhHHHHHHHHHcCCe------------------------EEEEEecCCCChhhHHHHHHHHHHHhcc
Q psy12736 448 GHC-MVVGVEGGGKRSLVRLASFAAGYQ------------------------VFTIQLSRGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 448 Gh~-LLvG~~GsGr~sl~rlaa~i~~~~------------------------~~~i~~~k~y~~~~f~edLk~~~~~ag~ 502 (567)
.|+ |+.|+.|+||+++++.-|...+|+ +++++-..+.+..+.++ |+.-+.....
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~ 116 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPS 116 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHH-HHHHHHhccc
Confidence 576 899999999999999887665442 44554444556655443 4444444445
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
.++.-|+++++.+.... +..| ||.. +.+.=+|...+.++|. .+++..+..+-+
T Consensus 117 ~~~~KVvIIdev~~Lt~---~a~naLLk~LEepp~~~~fIl~t~~~~kl~-~tI~SRc~~~~f 175 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST---NAFNALLKTLEEPPPHVKFIFATTEPHKVP-ITILSRCQRFDF 175 (576)
T ss_pred cCCceEEEEEChhhCCH---HHHHHHHHHHHcCCCCeEEEEEeCChhhhh-HHHHHhhhhhhc
Confidence 56666788888665554 2344 4432 3344456667777886 777766665544
No 179
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.43 E-value=0.074 Score=53.69 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=39.3
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc-------CCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA-------GYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~-------~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.+|+||.|++|+||++++|..|... ...++.+..+.-.+ ..+-...++.++.+|. +.|++++|.+-
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~ 116 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYS 116 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc----CCEEEEechhh
Confidence 4699999999999999999998653 22344333211000 1111344566666652 23677776553
No 180
>KOG0989|consensus
Probab=94.41 E-value=0.039 Score=56.03 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHHh-cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 183 TWILSLMNE-IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 183 ~~ll~~ll~-~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.-|.+.+.. ..-+.|+.||+|||||+++.-+-+.+..
T Consensus 46 ~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 46 QVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred HHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 345666666 4456788999999999999998877654
No 181
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.36 E-value=0.03 Score=60.70 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=25.6
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
+.+==+|++||||||||+++-.+|+.+.....
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 33445788899999999999999998876543
No 182
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.35 E-value=0.024 Score=56.21 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.-.||||.|+.|||||++|+.++..+.+
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3569999999999999999999998754
No 183
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.32 E-value=0.039 Score=59.58 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=24.9
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..+++++++||||||||.+++.+...+.
T Consensus 191 L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 191 LTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 44699999999999999999998776654
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.29 E-value=0.025 Score=59.32 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.++.++|+||||||||+++..+.+.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4688899999999999999998777643
No 185
>KOG0731|consensus
Probab=94.29 E-value=0.11 Score=59.16 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=49.8
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHH--------HHHHHHhccCCCcEEEEEecCc
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDL--------KSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edL--------k~~~~~ag~~~~~~vfl~~d~q 515 (567)
+.|+| +||+|++|+||+.|+|-.|--+|-.++.+. -+||-|-+ +.++..| -++.|+.+.+++-+
T Consensus 342 KiPkG-vLL~GPPGTGKTLLAKAiAGEAgVPF~svS------GSEFvE~~~g~~asrvr~lf~~a-r~~aP~iifideid 413 (774)
T KOG0731|consen 342 KIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFFSVS------GSEFVEMFVGVGASRVRDLFPLA-RKNAPSIIFIDEID 413 (774)
T ss_pred cCcCc-eEEECCCCCcHHHHHHHHhcccCCceeeec------hHHHHHHhcccchHHHHHHHHHh-hccCCeEEEecccc
Confidence 34666 899999999999999999999999999985 44666554 4556665 47889888887643
No 186
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.29 E-value=0.045 Score=56.64 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=42.2
Q ss_pred CccccccCcchhhHHHHHHHHHhc----CCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 169 FGDILVPTTDSTKLTWILSLMNEI----KRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 169 ~~~i~VpT~dtvR~~~ll~~ll~~----~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
..+-+|--.+.-+...++-.++++ |+-||++||||||||+++-.+-+.|-.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345567777777788888888875 5799999999999999999998887643
No 187
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.28 E-value=0.032 Score=60.74 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-..+..+.|||+.||||||||++++.+-...
T Consensus 33 l~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 33 LLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 3445689999999999999999998876543
No 188
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.26 E-value=0.062 Score=59.25 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCC-eEEeccCCCCchhhHHHHHhccCCCcceeee-cCCC
Q psy12736 182 LTWILSLMNEIKRP-CIVVGDTGTSKTATMMNFLRSLSPDKYLVIA-ELPP 230 (567)
Q Consensus 182 ~~~ll~~ll~~~~p-vLl~GptGtGKT~~i~~~l~~l~~~~~~~~~-egPp 230 (567)
....+..++...+- ++++||||||||+++..+|+.++......+. |.|+
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv 280 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV 280 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe
No 189
>PRK09087 hypothetical protein; Validated
Probab=94.22 E-value=0.046 Score=54.08 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+.++.|+||+|||||.+++.....
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 445999999999999999976654
No 190
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.22 E-value=0.028 Score=52.44 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..++++|++|||||++.+.+-..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999998887765
No 191
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.21 E-value=0.025 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.6
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
|.+.||+|+|||.+++.+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999976543
No 192
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.21 E-value=0.052 Score=48.34 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 179 STKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 179 tvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
|.+...-+...++.+.=|+|.|+-|+|||++++.+.+.+..+
T Consensus 1 T~~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 1 TIRLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 455666677778899999999999999999999999987543
No 193
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.20 E-value=0.05 Score=56.92 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=34.0
Q ss_pred ccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 172 ILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 172 i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
++-......+....+..+...+.|||++|++||||+.+++.+-.
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 34444455566667777888999999999999999999986543
No 194
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.18 E-value=0.045 Score=61.98 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
-.+...+.++++++++||+|||||++++.+.+.++...
T Consensus 28 ~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~ 65 (608)
T TIGR00764 28 EIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEE 65 (608)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchh
Confidence 35666677889999999999999999999998887553
No 195
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=94.15 E-value=0.05 Score=50.26 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 183 TWILSLMNEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 183 ~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
...+..++ .++++++.||||+|||....-.+
T Consensus 5 ~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~ 35 (169)
T PF00270_consen 5 QEAIEAII-SGKNVLISAPTGSGKTLAYILPA 35 (169)
T ss_dssp HHHHHHHH-TTSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHH-cCCCEEEECCCCCccHHHHHHHH
Confidence 34555566 68899999999999999887543
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=94.14 E-value=0.03 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++++||+|||||++++.+-+.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999988877653
No 197
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.13 E-value=0.028 Score=57.86 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.|++++||+|||||++++.+.+.+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999887654
No 198
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.11 E-value=0.03 Score=60.04 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.+||+||||||||++++.+.+.+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 4679999999999999999987764
No 199
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.10 E-value=0.039 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++++.||.|+|||++++.+++.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 68999999999999999999999874
No 200
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.10 E-value=0.03 Score=60.12 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.+||.||+|||||++++.+.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 46889999999999999999887754
No 201
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.09 E-value=0.028 Score=61.91 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=29.7
Q ss_pred CcccchhhhHHhh--hccCCccccCcchhHHHHHHHhhccc
Q psy12736 514 AEIVEEGYQVFTI--QLSRGYNEASFKEDLKSLYNLLGVKN 552 (567)
Q Consensus 514 ~qi~~e~fle~in--lL~~Gevp~Lf~~eE~~~i~~~~~~~ 552 (567)
.+|..+-+++.++ .-.+-+.|+-=.+||+..|. +.+.
T Consensus 464 ~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~~~--~~~~ 502 (512)
T TIGR03689 464 VGLRIEHLLAAVLDEFRESEDLPNTTNPDDWARIS--GKKG 502 (512)
T ss_pred cCcCHHHHHHHHHHhhcccccCCCCCCHHHHhhhh--CCCC
Confidence 3666778888888 77788999999999999984 5553
No 202
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.09 E-value=0.03 Score=59.46 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.+||+||+|||||++++.+.+.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999988765
No 203
>PRK08727 hypothetical protein; Validated
Probab=94.08 E-value=0.056 Score=53.66 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+++++||+|||||.++..+....
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999876654
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.028 Score=59.60 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.4
Q ss_pred HHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 188 LMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 188 ~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++..+..++|+||||+|||+++..+...+
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999987653
No 205
>PRK07261 topology modulation protein; Provisional
Probab=94.03 E-value=0.034 Score=52.45 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|||||++++.+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999876554
No 206
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.00 E-value=0.22 Score=58.78 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=61.7
Q ss_pred eEEecHHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHH-
Q psy12736 425 DLVLFEDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDL- 493 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edL- 493 (567)
.++=-+.|+++|++--+..+ .|.|++||+|++|+||+++++..|... +..++.+..+. |........|
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se-~~~~~~~~~Li 647 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE-FMEKHSVSRLV 647 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH-hhhhhhHHHHh
Confidence 45556788888887655432 344889999999999999998777543 33465555432 1111000000
Q ss_pred -----------HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 494 -----------KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 494 -----------k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
...+..+.......|++++|-+-.++.....+= +|..|.
T Consensus 648 G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~ 698 (857)
T PRK10865 648 GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGR 698 (857)
T ss_pred CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCc
Confidence 011222211222368888887766766666555 666654
No 207
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.00 E-value=0.034 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.-++++||+|||||++++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999998776653
No 208
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.99 E-value=0.32 Score=51.93 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc-----CCeEEEEEec
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA-----GYQVFTIQLS 481 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~-----~~~~~~i~~~ 481 (567)
.+++++.|++|+||+++++-++.-. +..++.++..
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 4679999999999999999776543 4556666543
No 209
>PRK12377 putative replication protein; Provisional
Probab=93.99 E-value=0.054 Score=54.32 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.+.....+++|.||+|||||.++..+.+.+.
T Consensus 95 ~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 95 DELMTGCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444567899999999999999999887764
No 210
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.97 E-value=0.32 Score=49.34 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHHHhc---CCCceEEeccCCCcHhHHHHHHHHH---c-CC-eEEEEEecCCCChhhH
Q psy12736 435 HLTRIHRALRL---SRGHCMVVGVEGGGKRSLVRLASFA---A-GY-QVFTIQLSRGYNEASF 489 (567)
Q Consensus 435 hi~ri~RvL~~---p~Gh~LLvG~~GsGr~sl~rlaa~i---~-~~-~~~~i~~~k~y~~~~f 489 (567)
++.+|...|.. +.+.+.++|+||+||++|++-++.- . .+ -++-+..++..+..+.
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~ 66 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQL 66 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccc
Confidence 45566666665 4556789999999999999887754 1 23 2455677776665443
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.97 E-value=0.25 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.7
Q ss_pred CceEEeccCCCcHhHHHHHHHHH
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i 470 (567)
.+++|.|++|+||+.|++.++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999976653
No 212
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.94 E-value=0.032 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.4
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-++++||||+|||+++..+-..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHH
Confidence 47899999999999998876544
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.94 E-value=0.077 Score=52.19 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=28.9
Q ss_pred cccCcchhhHHHHHHHHHhc-C---CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 173 LVPTTDSTKLTWILSLMNEI-K---RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 173 ~VpT~dtvR~~~ll~~ll~~-~---~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+|+...........+.+..+ + .|+++.||+|+|||.+++.+.+..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44444344444444444443 2 379999999999999999886654
No 214
>KOG0727|consensus
Probab=93.93 E-value=0.032 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
--+-||+.||||||||++++..-++
T Consensus 188 pprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4567999999999999999988765
No 215
>PRK08116 hypothetical protein; Validated
Probab=93.93 E-value=0.059 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.+++|.|++|||||.++..+.+.+.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999888764
No 216
>PF12846 AAA_10: AAA-like domain
Probab=93.91 E-value=0.032 Score=56.71 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.|++++|+||+|||++++.++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~ 25 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL 25 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999999888654
No 217
>KOG0743|consensus
Probab=93.90 E-value=0.032 Score=59.49 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
+--||.||||||||++|..+.+.|.-+.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence 45799999999999999998887765544
No 218
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.90 E-value=0.032 Score=61.34 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.+||+||+|||||.+++.+...+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45679999999999999998887754
No 219
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.89 E-value=0.15 Score=58.31 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=47.5
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCCh--hhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNE--ASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~--~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.|.| +||+|++|+||+++++..|.-++..++.+..+.-... ..-...++.++..| ....|.+++++|-
T Consensus 184 ~~~g-ill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a-~~~~P~IifIDEi 253 (644)
T PRK10733 184 IPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA-KKAAPCIIFIDEI 253 (644)
T ss_pred CCCc-EEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH-HhcCCcEEEehhH
Confidence 3555 9999999999999999999999999988865421100 00113456666666 3457888888764
No 220
>PRK06620 hypothetical protein; Validated
Probab=93.89 E-value=0.062 Score=52.68 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred ceeecCCCCCccccccCcchhhHHHHHHHHHhcC-----CCeEEeccCCCCchhhHH
Q psy12736 160 SYVHDGDKSFGDILVPTTDSTKLTWILSLMNEIK-----RPCIVVGDTGTSKTATMM 211 (567)
Q Consensus 160 ~~~~~~~~~~~~i~VpT~dtvR~~~ll~~ll~~~-----~pvLl~GptGtGKT~~i~ 211 (567)
++..++.-.|.+.+|-.....-+..+...--.-+ .+++|+||+|||||.+++
T Consensus 6 ~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 6 RFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCCCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHH
No 221
>KOG0733|consensus
Probab=93.88 E-value=0.15 Score=56.36 Aligned_cols=68 Identities=21% Similarity=0.402 Sum_probs=53.3
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE---ecCCCC-hhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ---LSRGYN-EASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~---~~k~y~-~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
-|+| +||-|++|+||++|++-.|--.+..+++|. +-.+|+ .+ .+-++.++.+| ..+-|++++++|-+-
T Consensus 222 PprG-vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES--EkkiRelF~~A-~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 222 PPRG-VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES--EKKIRELFDQA-KSNAPCIVFIDEIDA 293 (802)
T ss_pred CCCc-eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc--HHHHHHHHHHH-hccCCeEEEeecccc
Confidence 3444 899999999999999999999999999985 334443 44 36789999988 467888888876543
No 222
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.058 Score=57.22 Aligned_cols=38 Identities=34% Similarity=0.352 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCC--CeEEeccCCCCchhhHHHHHhccCC
Q psy12736 182 LTWILSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 182 ~~~ll~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
....+...+.++. ++++.|+||||||++++..++++..
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3444555565544 4799999999999999999988753
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.86 E-value=0.034 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCeEEeccCCCCchhhHHHHHh
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~ 215 (567)
+.++++|++|||||++++.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5689999999999999987655
No 224
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.84 E-value=0.057 Score=57.74 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=30.9
Q ss_pred chhhHHHHHHH--HHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 178 DSTKLTWILSL--MNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 178 dtvR~~~ll~~--ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
+-.+...|..+ ++..+.|+++.||+|||||.+...+-.
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~ 231 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSP 231 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhH
Confidence 34566667776 899999999999999999988887543
No 225
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.83 E-value=0.043 Score=58.09 Aligned_cols=31 Identities=35% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHhc-----CCCeEEeccCCCCchhhHHHH
Q psy12736 183 TWILSLMNEI-----KRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 183 ~~ll~~ll~~-----~~pvLl~GptGtGKT~~i~~~ 213 (567)
..++..++.+ ++-+.|+||||+|||+++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 188 RKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred HHHHHhhccccccccCcEEEEECCCCCcHHHHHHHH
No 226
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.80 E-value=0.041 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++-++++|++|||||++.+.+...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56789999999999999999877653
No 227
>PRK10436 hypothetical protein; Provisional
Probab=93.79 E-value=0.066 Score=58.52 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+.+-..+--+|++||||||||+++..+|+.+..
T Consensus 212 ~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 212 QALQQPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHhcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 334456668999999999999999999988754
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.79 E-value=0.15 Score=59.39 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=49.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
|..++||.|++|+||++++|..|...+..++.+..+ +.++. -.+.++.++..|. .+.|.+++++|-
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~--~~~~l~~lf~~a~-~~~p~il~iDEi 280 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGE--SEERLREIFKEAE-ENAPSIIFIDEI 280 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccH--HHHHHHHHHHHHH-hcCCcEEEeehh
Confidence 445689999999999999999999999888887632 22332 3456888887774 466778888774
No 229
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.78 E-value=0.062 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++++.||||||||.++-.++.++
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l 49 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILEL 49 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhhhhhcc
Confidence 7999999999999999999877665
No 230
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.76 E-value=0.043 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.6
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++|++|||||++.+.+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999887775
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.76 E-value=0.061 Score=56.21 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..-..+.+++|+||+|||||.++..+.+.+.
T Consensus 177 ~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 177 ENFDKNNENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 33334679999999999999999998877653
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.22 Score=55.14 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=54.3
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC---hhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN---EASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~---~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..|...+||.|++|+||+.|++..|.-.+..++.+..+ .|. ..+--.-++.++..|- +..|.++++++-
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek~ir~~F~~A~-~~~p~iiFiDEi 344 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEKNIRELFEKAR-KLAPSIIFIDEI 344 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHHHHHHHHHHHH-cCCCcEEEEEch
Confidence 35666899999999999999999999999999999755 221 2233467888888885 678888888753
No 233
>KOG0060|consensus
Probab=93.71 E-value=0.036 Score=60.67 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHH
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~ 213 (567)
+..=+..|+++|+|||+|||||++.+-+
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 4444678999999999999999988654
No 234
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.35 Score=52.87 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=67.1
Q ss_pred EEecHHHHHHHHHHHHHHhcC-CCc-eEEeccCCCcHhHHHHHHHHHcCC-------------------------eEEEE
Q psy12736 426 LVLFEDAREHLTRIHRALRLS-RGH-CMVVGVEGGGKRSLVRLASFAAGY-------------------------QVFTI 478 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p-~Gh-~LLvG~~GsGr~sl~rlaa~i~~~-------------------------~~~~i 478 (567)
++-.+++++++. +.++.. -+| .|+.|++|+||+++++..|....+ .+..+
T Consensus 19 iiGq~~~v~~L~---~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 19 ILGQDAVVAVLK---NALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred hcCcHHHHHHHH---HHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 333344444443 334432 246 589999999999999988765433 23333
Q ss_pred EecCCCChhhHHHHHHHHHHHhc---cCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccc
Q psy12736 479 QLSRGYNEASFKEDLKSLYNLLG---VKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKN 552 (567)
Q Consensus 479 ~~~k~y~~~~f~edLk~~~~~ag---~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~ 552 (567)
+-....+.. +++.+..... ..+..-++++.+.+-....-.+.+- .|.. +.+.=+|..++...|. ..++.
T Consensus 96 ~g~~~~gid----~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~-~tI~s 170 (451)
T PRK06305 96 DGASHRGIE----DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP-GTILS 170 (451)
T ss_pred eccccCCHH----HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc-hHHHH
Confidence 322223343 3443333222 3356677788875544432222222 2222 3333456666777776 67777
Q ss_pred cceeeee
Q psy12736 553 QATVFLF 559 (567)
Q Consensus 553 ~~~~~~~ 559 (567)
.+.++-+
T Consensus 171 Rc~~v~f 177 (451)
T PRK06305 171 RCQKMHL 177 (451)
T ss_pred hceEEeC
Confidence 7666554
No 235
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.69 E-value=0.047 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++++|++|+|||+++..++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999988754
No 236
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.69 E-value=0.037 Score=53.82 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++.++|+||+|||||++++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678899999999999999887654
No 237
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.64 E-value=0.11 Score=56.36 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=45.4
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEec
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d 513 (567)
|..++||.|++|+||++++|..|...+..++.+.-+. .|.- +-...++.++..|. .+.|.+++++|
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G-e~~~~vr~lF~~A~-~~~P~ILfIDE 284 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG-DGPKLVRELFRVAE-ENAPSIVFIDE 284 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc-hHHHHHHHHHHHHH-hCCCcEEeHHH
Confidence 3446899999999999999999999888887775332 1211 11233666666664 45787777765
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.64 E-value=0.27 Score=48.07 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.6
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
...++++|.|++|+||+++++..+.-+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999998877544
No 239
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.62 E-value=0.12 Score=55.51 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS 481 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~ 481 (567)
.+|+||+|++|+||++++|..|...+..++.+..+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 48999999999999999999999999999998654
No 240
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.62 E-value=0.044 Score=47.73 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEeccCCCCchhhHHHHHh
Q psy12736 196 CIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~ 215 (567)
|+++|++|+|||++++.++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 241
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.62 E-value=0.07 Score=54.22 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcC--CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 182 LTWILSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 182 ~~~ll~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...++..+.+++ +++++.||+|+|||++++.+...+.
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 445566666666 7999999999999999999887664
No 242
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.61 E-value=0.039 Score=57.65 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+++++||+|||||++++.+.+.+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhC
Confidence 35799999999999999998877654
No 243
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.59 E-value=0.068 Score=61.67 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHhcCCC--e-EEeccCCCCchhhHHHHHhccC
Q psy12736 179 STKLTWILSLMNEIKRP--C-IVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 179 tvR~~~ll~~ll~~~~p--v-Ll~GptGtGKT~~i~~~l~~l~ 218 (567)
.-+....+...+....| + ++.|+||||||++++.+++.+.
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455666766764443 4 5999999999999999988764
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.58 E-value=0.042 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++||+|+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 245
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.57 E-value=0.072 Score=59.93 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+.+.+-..+--+|++||||||||+++..+++.++.
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 44444455667899999999999999999988754
No 246
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.54 E-value=0.59 Score=49.07 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=63.9
Q ss_pred EEecHHHHHHHHHHHHHHhcC-CCc-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEE
Q psy12736 426 LVLFEDAREHLTRIHRALRLS-RGH-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQ 479 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p-~Gh-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~ 479 (567)
++-.+.+++++.+. +... .+| .||.|++|+||+++++..+....+ ++..++
T Consensus 16 iig~~~~~~~l~~~---~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 16 VIGQEHIVQTLKNA---IKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred ccCcHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 33444555554433 3332 245 588999999999999877655332 233443
Q ss_pred ecCCCChhhHHHHHHHHHHHh---ccCCCcEEEEEecCcccchhhhHHhh-hccC-----CccccCcchhHHHHHHHhhc
Q psy12736 480 LSRGYNEASFKEDLKSLYNLL---GVKNQATVFLFTAAEIVEEGYQVFTI-QLSR-----GYNEASFKEDLKSLYNLLGV 550 (567)
Q Consensus 480 ~~k~y~~~~f~edLk~~~~~a---g~~~~~~vfl~~d~qi~~e~fle~in-lL~~-----Gevp~Lf~~eE~~~i~~~~~ 550 (567)
-...-+.. +++.++..+ ...+..-|+++++.+-.... ..| +|.. +.+-=++...+.+++. ..+
T Consensus 93 ~~~~~~~~----~~~~l~~~~~~~p~~~~~~vviidea~~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~~~l~-~~l 164 (355)
T TIGR02397 93 AASNNGVD----DIREILDNVKYAPSSGKYKVYIIDEVHMLSKS---AFNALLKTLEEPPEHVVFILATTEPHKIP-ATI 164 (355)
T ss_pred ccccCCHH----HHHHHHHHHhcCcccCCceEEEEeChhhcCHH---HHHHHHHHHhCCccceeEEEEeCCHHHHH-HHH
Confidence 33222332 344444443 34455567777776544332 233 3322 1122245555666665 566
Q ss_pred cccceeeee
Q psy12736 551 KNQATVFLF 559 (567)
Q Consensus 551 ~~~~~~~~~ 559 (567)
+..+.++-+
T Consensus 165 ~sr~~~~~~ 173 (355)
T TIGR02397 165 LSRCQRFDF 173 (355)
T ss_pred HhheeEEEc
Confidence 665555444
No 247
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.54 E-value=0.077 Score=54.96 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=39.2
Q ss_pred cccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 171 DILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 171 ~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
+.+---+=+.....++...+....++|++|-||||||++++.++...+..+
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~e 201 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDE 201 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence 333333444556677788889999999999999999999999888766544
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.52 E-value=0.51 Score=47.25 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=45.1
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHHHHHHHhc---------cCCCcEEEEEecC
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLKSLYNLLG---------VKNQATVFLFTAA 514 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk~~~~~ag---------~~~~~~vfl~~d~ 514 (567)
.++++|.|.+|+||+.|+.-.|.-. +..+.-+. ..+|.+.++..+..+. +. +.-+++++|-
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it------~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvIDDi 171 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVIDEI 171 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE------HHHHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEeCC
Confidence 3578999999999999987655432 56665553 4566666665443221 12 3446777876
Q ss_pred cccchhh--hHHhh-hcc
Q psy12736 515 EIVEEGY--QVFTI-QLS 529 (567)
Q Consensus 515 qi~~e~f--le~in-lL~ 529 (567)
+....+- .+.++ |++
T Consensus 172 g~~~~s~~~~~~l~~Ii~ 189 (244)
T PRK07952 172 GVQTESRYEKVIINQIVD 189 (244)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 6543322 22455 554
No 249
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.51 E-value=0.047 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+++++|++|||||++.+.+-..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
No 250
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.50 E-value=0.042 Score=59.61 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.+||+||||||||++++.+.+.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999887764
No 251
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.46 E-value=0.041 Score=51.97 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+||+||+|||||.+++.+-+.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999988777654
No 252
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.18 Score=52.00 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=76.5
Q ss_pred CCc-eEEeccCCCcHhHHHHHHHHHcC------------------------CeEEEEEecCCCChhhHHHHHHHHHHHhc
Q psy12736 447 RGH-CMVVGVEGGGKRSLVRLASFAAG------------------------YQVFTIQLSRGYNEASFKEDLKSLYNLLG 501 (567)
Q Consensus 447 ~Gh-~LLvG~~GsGr~sl~rlaa~i~~------------------------~~~~~i~~~k~y~~~~f~edLk~~~~~ag 501 (567)
..| .||.|++|+||++++..-|.-.. .++.+++.+...+.+--.+.+|.+.....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~ 102 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS 102 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhc
Confidence 457 79999999999999776665443 47788887776664434566777766554
Q ss_pred cC---CCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeeee
Q psy12736 502 VK---NQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLFT 560 (567)
Q Consensus 502 ~~---~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~~ 560 (567)
.. +..-|+++++.+-..+ ...| ++.+=| .+-++...+...|. .++|..+..+-+.
T Consensus 103 ~~~~~~~~kviiidead~mt~---~A~nallk~lEep~~~~~~il~~n~~~~il-~tI~SRc~~i~f~ 166 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTE---DAANALLKTLEEPPKNTRFILITNDPSKIL-PTIRSRCQRIRFK 166 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhH---HHHHHHHHHhccCCCCeEEEEEcCChhhcc-chhhhcceeeecC
Confidence 43 5667777777655444 5667 776555 44567777888887 8888888877664
No 253
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.43 E-value=0.074 Score=55.06 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+++++|.||+|||||.++..+.+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999888764
No 254
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.43 E-value=0.17 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS 481 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~ 481 (567)
.+|+||+|++|+||++++|..|...+..++.++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 37999999999999999999999999999998744
No 255
>PRK13948 shikimate kinase; Provisional
Probab=93.42 E-value=0.17 Score=48.35 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=42.3
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEe-------------cCCCChhhHHHHHHHHHHHh
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQL-------------SRGYNEASFKEDLKSLYNLL 500 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~-------------~k~y~~~~f~edLk~~~~~a 500 (567)
.|..+++|+|..||||+++.+..|...++.++.... -+.++...|++--..++...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l 76 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRL 76 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999988998887641 13456667776555555544
No 256
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.38 E-value=0.047 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++++||+|||||++.+.+-..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
No 257
>PRK14530 adenylate kinase; Provisional
Probab=93.38 E-value=0.051 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++++||||||||++.+.+.+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5579999999999999999887765
No 258
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.35 E-value=0.054 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++++++||||+|||.++..++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 468999999999999998877654
No 259
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.33 E-value=0.033 Score=54.03 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=22.8
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..|.-|.++||+|||||++++ +++.|.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLR-clN~LE 52 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLR-CLNGLE 52 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHH-HHHCCc
Confidence 4578889999999999999985 566653
No 260
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.33 E-value=0.038 Score=49.49 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++|++|||||++++.+....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 468889999999999999998665543
No 261
>KOG2228|consensus
Probab=93.31 E-value=0.41 Score=49.49 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.-+..|+++||.|+|||+++...|..
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhh
Confidence 46789999999999999999998876
No 262
>PHA00729 NTP-binding motif containing protein
Probab=93.31 E-value=0.044 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++++|+||||||+++..+...+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999988765
No 263
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.074 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+||+||+|||||++++-+.+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 79999999999999998877654
No 264
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.28 E-value=0.6 Score=43.92 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHH-------------
Q psy12736 431 DAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLK------------- 494 (567)
Q Consensus 431 dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk------------- 494 (567)
.++.++.+..|-+.....++||.|..|+||..++|..-..+ +..++.++.+ .++.+.....|-
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e~~LFG~~~~~~~~~~~~ 84 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA-ALPEELLESELFGHEKGAFTGARSD 84 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT-TS-HHHHHHHHHEBCSSSSTTTSSE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh-hhhcchhhhhhhccccccccccccc
Confidence 34555655555555666999999999999999999876654 3568888876 344443333332
Q ss_pred --HHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCcc
Q psy12736 495 --SLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYN 533 (567)
Q Consensus 495 --~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gev 533 (567)
.++..| +..+ +++++-+-.....-+.+- +|.+|.+
T Consensus 85 ~~G~l~~A---~~Gt-L~Ld~I~~L~~~~Q~~Ll~~l~~~~~ 122 (168)
T PF00158_consen 85 KKGLLEQA---NGGT-LFLDEIEDLPPELQAKLLRVLEEGKF 122 (168)
T ss_dssp BEHHHHHT---TTSE-EEEETGGGS-HHHHHHHHHHHHHSEE
T ss_pred cCCceeec---cceE-EeecchhhhHHHHHHHHHHHHhhchh
Confidence 233333 2333 555665555666666665 7776654
No 265
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.27 E-value=0.044 Score=51.69 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=24.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+.-++++|++|||||++++.+...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999998877764
No 266
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.27 E-value=0.055 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
++++||||||||++.+.+..++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999887765
No 267
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.24 E-value=0.043 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHH
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
..+.-+.++||+|||||++++-++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356779999999999999998865
No 268
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.23 E-value=0.057 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+..+|++|+||||||.+..+++.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~ 47 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG 47 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999999864
No 269
>PRK06762 hypothetical protein; Provisional
Probab=93.21 E-value=0.053 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
=++++|++|||||++.+.+.+.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999887765
No 270
>KOG0742|consensus
Probab=93.21 E-value=0.071 Score=56.07 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCCCccccccCcchhhHHHHHHHHHhc------CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 166 DKSFGDILVPTTDSTKLTWILSLMNEI------KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 166 ~~~~~~i~VpT~dtvR~~~ll~~ll~~------~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++.+++.++.=-.|...|...--+- -+++|+.||||||||+..+.+-++
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhh
Confidence 347888888877666666655443321 258999999999999999998765
No 271
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.21 E-value=0.055 Score=58.32 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++||+||||||||++++.+-+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999887655
No 272
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.20 E-value=0.058 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+.|+++|++|+|||+++++++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 273
>PRK13949 shikimate kinase; Provisional
Probab=93.20 E-value=0.15 Score=48.08 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=38.2
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec-------------CCCChhhHHHHHHHHHHH
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS-------------RGYNEASFKEDLKSLYNL 499 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~-------------k~y~~~~f~edLk~~~~~ 499 (567)
+++|+|.+||||+++.|..|...++.++....- +..+...|++-...++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~ 66 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHE 66 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHH
Confidence 579999999999999999999889887776411 234556676666666555
No 274
>KOG0991|consensus
Probab=93.20 E-value=0.052 Score=53.12 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=0.0
Q ss_pred CeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
|+++.||||||||+.+.-+-+.+-...|
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ 77 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSY 77 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhh
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.18 E-value=0.057 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.+..+|+.||||||||++..+++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999999998875
No 276
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.18 E-value=0.055 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=19.2
Q ss_pred eEEeccCCCCchhhHHHHHhc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~ 216 (567)
+++.||||||||+++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998875
No 277
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.18 E-value=0.065 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.3
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||+++++++..-
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 278
>PRK13947 shikimate kinase; Provisional
Probab=93.15 E-value=0.29 Score=45.64 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=27.8
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ 479 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~ 479 (567)
|++|+|++||||+++++..|...++.++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999887653
No 279
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.14 E-value=0.084 Score=53.98 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=42.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhccCCCcceeeecCCCCCceEEEEeeccchhhhhhccccccccccCCHHHHHHHHHHhh
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEF 273 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~egPp~gkk~v~iFNl~D~~R~~rg~f~~~~~~~~s~~sl~~I~~~il 273 (567)
-++|++|+||.|||+++++|.+.-+... .+ . .. .+-|+++..|...+..++|.++|
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~------d~-~---~~--------------~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQS------DE-D---AE--------------RIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCC------CC-C---Cc--------------cccEEEEecCCCCChHHHHHHHH
Confidence 4799999999999999999988644321 00 1 11 34566777888888888888888
Q ss_pred hh
Q psy12736 274 TR 275 (567)
Q Consensus 274 ~~ 275 (567)
..
T Consensus 118 ~~ 119 (302)
T PF05621_consen 118 EA 119 (302)
T ss_pred HH
Confidence 74
No 280
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.14 E-value=0.076 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
=+++.|++|+|||+++..++..+
T Consensus 17 ~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 17 LIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp EEEEES-TTSTTHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHhhhhc
Confidence 35677999999999999998876
No 281
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.13 E-value=0.039 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=17.5
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
||||.|+||+|||++++.+-+.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT
T ss_pred CEeeECCCccHHHHHHHHHHHHcC
Confidence 799999999999999998877653
No 282
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.24 Score=50.74 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=62.4
Q ss_pred cccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHH-----HhcCCCceEEeccCCCcHhHHHHHHHHH
Q psy12736 396 DLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRA-----LRLSRGHCMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 396 ~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~Rv-----L~~p~Gh~LLvG~~GsGr~sl~rlaa~i 470 (567)
+++...++++.+.+|.--= +. .++.+.. ..-.|-.||.-- .....+|+||+|++||||+-|++--|.+
T Consensus 48 ~lPtP~eik~~Ld~YVIGQ-e~--AKKvLsV----AVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~ 120 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQ-EQ--AKKVLSV----AVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKI 120 (408)
T ss_pred cCCChHHHHHHhhhheecc-hh--hhceeee----eehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHH
Confidence 3566666665554443100 01 0333333 345677777532 2234689999999999999999988888
Q ss_pred cCCeEEEEEe----cCCCChhhHHHHHHHHHHHhcc
Q psy12736 471 AGYQVFTIQL----SRGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 471 ~~~~~~~i~~----~k~y~~~~f~edLk~~~~~ag~ 502 (567)
.+-.+---.. -.+|--.+-.+-|.++++.|--
T Consensus 121 LnVPFaiADATtLTEAGYVGEDVENillkLlqaady 156 (408)
T COG1219 121 LNVPFAIADATTLTEAGYVGEDVENILLKLLQAADY 156 (408)
T ss_pred hCCCeeeccccchhhccccchhHHHHHHHHHHHccc
Confidence 8876543322 2467666666677788887743
No 283
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.10 E-value=0.067 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 284
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.10 E-value=0.059 Score=57.93 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++||+||||||||.+++.+-..+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 4589999999999999999887655
No 285
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.47 Score=50.34 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=63.9
Q ss_pred EEecHHHHHHHHHHHHHHhc--CCCceEEeccCCCcHhHHHHHHHHHcCC------------eEEEEEecCCCChhhHHH
Q psy12736 426 LVLFEDAREHLTRIHRALRL--SRGHCMVVGVEGGGKRSLVRLASFAAGY------------QVFTIQLSRGYNEASFKE 491 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~--p~Gh~LLvG~~GsGr~sl~rlaa~i~~~------------~~~~i~~~k~y~~~~f~e 491 (567)
++-.+++++.+.+ .+.. ...+.|+.|++|+||+++++..|...++ .+++++-...-+. +
T Consensus 19 iig~~~~~~~l~~---~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 91 (367)
T PRK14970 19 VVGQSHITNTLLN---AIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV----D 91 (367)
T ss_pred cCCcHHHHHHHHH---HHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH----H
Confidence 3444455544433 3333 2346789999999999999877765433 2333321111122 4
Q ss_pred HHHHHHHHhc---cCCCcEEEEEecCcccchhhhHHhh-hccC--CccccCcchhHHHHHHHhhccccceeeee
Q psy12736 492 DLKSLYNLLG---VKNQATVFLFTAAEIVEEGYQVFTI-QLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 492 dLk~~~~~ag---~~~~~~vfl~~d~qi~~e~fle~in-lL~~--Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
+++.++..+. ..++.-++++++.+-..+.-++.+. .|.. +..-=++...+...+. ..++..+.++-+
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~-~~l~sr~~~v~~ 164 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII-PTILSRCQIFDF 164 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC-HHHHhcceeEec
Confidence 5666665443 3455667778876544432222222 2321 1111234455555654 555555544433
No 286
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.05 E-value=0.13 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+++|+|++|||||.++..+.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999888764
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.04 E-value=0.06 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=20.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
.+..|||+||+|+|||++...+..+-....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T 31 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT 31 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe
Confidence 356799999999999999999887633333
No 288
>PRK06921 hypothetical protein; Provisional
Probab=93.03 E-value=0.099 Score=53.04 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.+++|+||+|||||.++..+.+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 578899999999999999999888754
No 289
>KOG0734|consensus
Probab=93.03 E-value=0.054 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
-+-|||+||||||||++.+..-..
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcc
Confidence 467999999999999999887554
No 290
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.02 E-value=0.087 Score=51.17 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 178 DSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 178 dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
-|......++.+. +..-|.+.||+|||||.+.-..-
T Consensus 5 ~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 5 KNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAA 40 (205)
T ss_dssp -SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHH
Confidence 3566777888888 67789999999999999987653
No 291
>KOG2028|consensus
Probab=93.00 E-value=0.28 Score=51.11 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=40.7
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCe-EEEEEecCCC-ChhhHHHHHHHHHHHhc----cCCCcEEEEEec
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQ-VFTIQLSRGY-NEASFKEDLKSLYNLLG----VKNQATVFLFTA 513 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~-~~~i~~~k~y-~~~~f~edLk~~~~~ag----~~~~~~vfl~~d 513 (567)
-.++|-|++|+||+||+|+.+.-+.-. .+-|+++..- +. .|+|.++.++- .-.+.+++.+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t----~dvR~ife~aq~~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT----NDVRDIFEQAQNEKSLTKRKTILFIDE 230 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch----HHHHHHHHHHHHHHhhhcceeEEEeHH
Confidence 357999999999999999998876543 3334444322 33 36666666553 334566666654
No 292
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.00 E-value=0.5 Score=49.02 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCC--------eEEEEEe--cCCCChhhHHHHHHHHHHHhccCCCc
Q psy12736 439 IHRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGY--------QVFTIQL--SRGYNEASFKEDLKSLYNLLGVKNQA 506 (567)
Q Consensus 439 i~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~--------~~~~i~~--~k~y~~~~f~edLk~~~~~ag~~~~~ 506 (567)
+.+.+.+. -.|+ |+.|+.|+||+++++..|...-| ++..+.. .+.++..+-++-...+ ......++.
T Consensus 16 l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~-~~~p~~~~~ 94 (313)
T PRK05564 16 IKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEV-NKKPYEGDK 94 (313)
T ss_pred HHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHH-hcCcccCCc
Confidence 44445543 4577 89999999999999877664322 3334433 3445555544433322 234456666
Q ss_pred EEEEEecCcccchhhhHHhh-hccCC-cccc----CcchhHHHHHHHhhccccceeeee
Q psy12736 507 TVFLFTAAEIVEEGYQVFTI-QLSRG-YNEA----SFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 507 ~vfl~~d~qi~~e~fle~in-lL~~G-evp~----Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
-|+++.+.+-.+++ .-| ||.+= |.|. ++..++.+.+. .+++..+.++-+
T Consensus 95 kv~iI~~ad~m~~~---a~naLLK~LEepp~~t~~il~~~~~~~ll-~TI~SRc~~~~~ 149 (313)
T PRK05564 95 KVIIIYNSEKMTEQ---AQNAFLKTIEEPPKGVFIILLCENLEQIL-DTIKSRCQIYKL 149 (313)
T ss_pred eEEEEechhhcCHH---HHHHHHHHhcCCCCCeEEEEEeCChHhCc-HHHHhhceeeeC
Confidence 77777775444442 334 44322 2222 44446666775 777777766655
No 293
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.97 E-value=0.074 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 294
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.97 E-value=0.12 Score=56.36 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|++++||+|||||.+++.+.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Confidence 589999999999999999777654
No 295
>PRK14532 adenylate kinase; Provisional
Probab=92.97 E-value=0.065 Score=51.02 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+++++||||||||++.+.+-+.+.
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
No 296
>PRK10536 hypothetical protein; Provisional
Probab=92.97 E-value=0.096 Score=52.55 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 179 STKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 179 tvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+.....++..+. .+.-|+++||+|||||.++..+...
T Consensus 61 n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 61 NEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455555444 4679999999999999999887653
No 297
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.95 E-value=0.067 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.8
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
++++|++|||||++.+.+...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999998876653
No 298
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=92.94 E-value=0.074 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.3
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||+++++++.+-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~ 24 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 299
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.94 E-value=0.062 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++++|++|+|||++.+.+...+
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHc
Confidence 35689999999999999999887664
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.28 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.6
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..||+||+|||||++++.+.+.+.
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 469999999999999998877654
No 301
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.88 E-value=0.11 Score=54.39 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
....|+|+.|++|||||++++.+-.-++.
T Consensus 27 ~~~~~vLl~G~pG~gKT~lar~la~llP~ 55 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKSTAVRALAALLPL 55 (334)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 33479999999999999999988666653
No 302
>PRK14531 adenylate kinase; Provisional
Probab=92.87 E-value=0.064 Score=51.07 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++++||||||||++.+.+-+.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999998876654
No 303
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.86 E-value=0.14 Score=44.69 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=26.7
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEEe
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQL 480 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~ 480 (567)
+++.|++||||+|+++..|-..|+.++.+.-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 5799999999999999999888988877643
No 304
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=92.85 E-value=0.082 Score=48.43 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=21.4
Q ss_pred eEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
++++|+.|+|||++++.+...--+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~ 27 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPEN 27 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSS
T ss_pred EEEECCCCCCHHHHHHHHHhhccccc
Confidence 78999999999999999987643333
No 305
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.85 E-value=0.065 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.-++++||+|||||++++.+...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999887654
No 306
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.83 E-value=0.11 Score=57.76 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=37.2
Q ss_pred CCCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHH
Q psy12736 166 DKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 166 ~~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~ 213 (567)
...|.+++--.....+....++.+...+.|||+.|++||||+.+++.+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~ai 247 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYAC 247 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHH
Confidence 345666665555555566677777889999999999999999999885
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=92.81 E-value=0.057 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++|++|++|+|||++|+.+++.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999875
No 308
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.80 E-value=0.13 Score=55.46 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred CCCCccccccCcchhhHHHHHHHHHhc----CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 166 DKSFGDILVPTTDSTKLTWILSLMNEI----KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 166 ~~~~~~i~VpT~dtvR~~~ll~~ll~~----~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|.+ +|++.+..-....+..+..+ ..|++|+||+|||||.+++.+.+.+
T Consensus 106 ~~tfd~-fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 106 KYTFDN-FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CCcccc-cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 334444 34454444333444444442 3589999999999999998877654
No 309
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.80 E-value=0.21 Score=55.19 Aligned_cols=69 Identities=9% Similarity=0.278 Sum_probs=42.6
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCe--------EEEEEec-----CCCChhhHHHHHHHHHHHhc---cCCCcEEE
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQ--------VFTIQLS-----RGYNEASFKEDLKSLYNLLG---VKNQATVF 509 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~--------~~~i~~~-----k~y~~~~f~edLk~~~~~ag---~~~~~~vf 509 (567)
|..++||.|++|+||++++|..|.-.+.. .+.+.+. ..|- .+....++.++..|. ..++|+++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyv-Gete~~ir~iF~~Ar~~a~~g~p~II 293 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYV-GETERQIRLIFQRAREKASDGRPVIV 293 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccccc-chHHHHHHHHHHHHHHHhhcCCCceE
Confidence 44569999999999999999988765443 2222221 1221 122334555555442 34678999
Q ss_pred EEecCc
Q psy12736 510 LFTAAE 515 (567)
Q Consensus 510 l~~d~q 515 (567)
+++|-+
T Consensus 294 fIDEiD 299 (512)
T TIGR03689 294 FFDEMD 299 (512)
T ss_pred EEehhh
Confidence 887754
No 310
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.79 E-value=0.069 Score=49.23 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+++++|++|+|||++++++....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 47899999999999999987643
No 311
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.4 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
++.||+||+|+|||++++-+-+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999988776553
No 312
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.76 E-value=0.065 Score=49.34 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=22.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++-||++||+|+|||++...++++
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4788999999999999999988875
No 313
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.76 E-value=0.46 Score=53.98 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=35.2
Q ss_pred eEEecHHHHHHHHHHHHHHhc--CCCc-eEEeccCCCcHhHHHHHHHHHcCCeEEE
Q psy12736 425 DLVLFEDAREHLTRIHRALRL--SRGH-CMVVGVEGGGKRSLVRLASFAAGYQVFT 477 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~~--p~Gh-~LLvG~~GsGr~sl~rlaa~i~~~~~~~ 477 (567)
+++..++.++-+.++.+-... ..|+ ++|.|++|+||++++++.|...++++.+
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 344555555544444333222 2344 7899999999999999999888876533
No 314
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.11 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+|++||+|||||++++.+.+.+.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhc
Confidence 369999999999999999988764
No 315
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.74 E-value=0.14 Score=56.06 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred ecCCCCCccccccCcchhhHHHHHHHHHhcC---CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 163 HDGDKSFGDILVPTTDSTKLTWILSLMNEIK---RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 163 ~~~~~~~~~i~VpT~dtvR~~~ll~~ll~~~---~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++...|.+-+|-.....-+.......-..+ .|++++||+|||||.+++.+.+.+
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH
No 316
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.74 E-value=0.098 Score=52.19 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=38.3
Q ss_pred ccccCcchhhHHHHHHHHHh-cCCCeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 172 ILVPTTDSTKLTWILSLMNE-IKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 172 i~VpT~dtvR~~~ll~~ll~-~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
..|||.+....--+++-+.- .+-=|++||+||||||+.+..++...+...+
T Consensus 105 ~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~ 156 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNST 156 (375)
T ss_pred ccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCC
Confidence 46788777777777776654 4456889999999999999998875544443
No 317
>PRK12377 putative replication protein; Provisional
Probab=92.73 E-value=0.5 Score=47.42 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHHHHHHHhc-----c--CCCcEEEEEecCcc
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLKSLYNLLG-----V--KNQATVFLFTAAEI 516 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk~~~~~ag-----~--~~~~~vfl~~d~qi 516 (567)
.++++|.|++|+||+.|+...|... ++.+.-+. ..++.++|+..+.... + -.+.-+++++|-+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~------~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE------HHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 4689999999999999988766543 45554443 4466666666543211 0 12444677777633
Q ss_pred c--chhhhHHhh-hccCC---ccccCc----chhHHHH-----HHHhhcccc-ceeeeeecc
Q psy12736 517 V--EEGYQVFTI-QLSRG---YNEASF----KEDLKSL-----YNLLGVKNQ-ATVFLFTAA 562 (567)
Q Consensus 517 ~--~e~fle~in-lL~~G---evp~Lf----~~eE~~~-----i~~~~~~~~-~~~~~~~~~ 562 (567)
. .+.-.+.+. +++.- ..|-++ +.+|+.+ |+ ..++.. +...-+++.
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~-dRl~~~~~~~v~~~g~ 235 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVM-DRMTMNGGRWVNFNWE 235 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHH-HHHhhCCCeEEEeCCc
Confidence 2 233344444 54422 233333 2455544 43 556543 344555554
No 318
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=92.70 E-value=0.081 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++.+++..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~ 23 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN 23 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 319
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.69 E-value=0.32 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+||+||+|||||+++..+.+.+.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 469999999999999988776553
No 320
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.68 E-value=0.073 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..|+|++|.||+|||++++.++..+-
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHH
Confidence 44999999999999999999887754
No 321
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=92.67 E-value=0.082 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=19.8
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 322
>PRK10646 ADP-binding protein; Provisional
Probab=92.66 E-value=0.14 Score=47.30 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 177 TDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 177 ~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+|.+....+...++.+.-|+|.|+=|+|||++++.+.+.+-.
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4677778888888888888999999999999999999998753
No 323
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.65 E-value=0.13 Score=57.55 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred cceeecCCCCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHH
Q psy12736 159 RSYVHDGDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 159 ~~~~~~~~~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~ 213 (567)
|...-.+...+..++-......+..-.++.+...+.||||+||+||||+.+++.+
T Consensus 185 ~~~~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~i 239 (534)
T TIGR01817 185 PEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAI 239 (534)
T ss_pred ccccccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHH
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.63 E-value=0.086 Score=49.25 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
+..|-.++++||+|||||++.+..-+-.+++.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~~ 57 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPTS 57 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCCC
No 325
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.63 E-value=0.23 Score=50.34 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCceEEeccCCCcHhHHHH-HHHHHcC--CeEEEEEecCCCC-------------hhhHHHHHHHHHH
Q psy12736 435 HLTRIHRALRLSRGHCMVVGVEGGGKRSLVR-LASFAAG--YQVFTIQLSRGYN-------------EASFKEDLKSLYN 498 (567)
Q Consensus 435 hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~r-laa~i~~--~~~~~i~~~k~y~-------------~~~f~edLk~~~~ 498 (567)
++..+.+.+..++|.+++.|++||||+|+.+ +..++.. ..++.|+-...|. -..|.+-++.++
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~l- 146 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAIL- 146 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHh-
Confidence 3445566778899999999999999999987 5577753 3455553221111 013445555544
Q ss_pred HhccCCCcEEEEEecCcccchh-hhHHhhhccCCc
Q psy12736 499 LLGVKNQATVFLFTAAEIVEEG-YQVFTIQLSRGY 532 (567)
Q Consensus 499 ~ag~~~~~~vfl~~d~qi~~e~-fle~inlL~~Ge 532 (567)
...|-++++.+- .+++ +...++..++|.
T Consensus 147 ----R~~PD~i~vgEi--R~~e~a~~~~~aa~tGh 175 (264)
T cd01129 147 ----RQDPDIIMVGEI--RDAETAEIAVQAALTGH 175 (264)
T ss_pred ----ccCCCEEEeccC--CCHHHHHHHHHHHHcCC
Confidence 335777777653 4433 444556444454
No 326
>PRK08233 hypothetical protein; Provisional
Probab=92.63 E-value=0.077 Score=49.90 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.-|.+.|++|||||++.+.+...+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467789999999999998887764
No 327
>PF13173 AAA_14: AAA domain
Probab=92.63 E-value=0.32 Score=43.30 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=53.0
Q ss_pred CceEEeccCCCcHhHHHHHHH-HHc-CCeEEEEEecCCCChhhHHH-HHHHHHHHhccCCCcEEEEEecCcccchhhhHH
Q psy12736 448 GHCMVVGVEGGGKRSLVRLAS-FAA-GYQVFTIQLSRGYNEASFKE-DLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVF 524 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa-~i~-~~~~~~i~~~k~y~~~~f~e-dLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~ 524 (567)
.-++|.|+.|+||+++++-.+ ... ..+++.+.....-. ....+ ++.+.+.+. ..+++..+++++-|-.+ .+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~~-~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD-RRLADPDLLEYFLEL-IKPGKKYIFIDEIQYLP-DWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH-HHHhhhhhHHHHHHh-hccCCcEEEEehhhhhc-cHHHH
Confidence 346899999999999985544 333 34555555432111 11111 134445444 44467778889988775 58888
Q ss_pred hh-hccCC-ccccCcch
Q psy12736 525 TI-QLSRG-YNEASFKE 539 (567)
Q Consensus 525 in-lL~~G-evp~Lf~~ 539 (567)
++ +...+ ++.=+.+.
T Consensus 80 lk~l~d~~~~~~ii~tg 96 (128)
T PF13173_consen 80 LKFLVDNGPNIKIILTG 96 (128)
T ss_pred HHHHHHhccCceEEEEc
Confidence 88 77766 33333433
No 328
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.63 E-value=0.064 Score=60.72 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=38.4
Q ss_pred eeCcccccceeecCCCCCccccccCcchhhHHHHHHHHHh---cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 152 VPWRHLVRSYVHDGDKSFGDILVPTTDSTKLTWILSLMNE---IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 152 ~~W~~~v~~~~~~~~~~~~~i~VpT~dtvR~~~ll~~ll~---~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+|.+...+ ..+.++.++....-....++..... .++-++|.||+|||||++++-+.+.+.
T Consensus 72 ~pW~eKyrP------~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 72 EPWVEKYKP------ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CchHHHhCC------CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467765432 2355666666554444444444332 223499999999999999988766543
No 329
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.62 E-value=1.4 Score=46.04 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=65.2
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHH---cCCeEEEEEecCCCChhhHHHHHHHHHHH---------hccCCCcEEEEEe
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFA---AGYQVFTIQLSRGYNEASFKEDLKSLYNL---------LGVKNQATVFLFT 512 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i---~~~~~~~i~~~k~y~~~~f~edLk~~~~~---------ag~~~~~~vfl~~ 512 (567)
....+++|.|.+|+||+.|+.-+|.- .|+.+.-++ ..++.+.|+..... ..+.+ .=+++++
T Consensus 181 ~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t------~~~l~~~l~~~~~~~~~~~~~~~~~l~~-~DLLIID 253 (329)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT------ADELIEILREIRFNNDKELEEVYDLLIN-CDLLIID 253 (329)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE------HHHHHHHHHHHHhccchhHHHHHHHhcc-CCEEEEe
Confidence 45688999999999999998776654 356655554 33444555443211 11122 2346777
Q ss_pred cCccc------chhhhHHhh-hccCCc---cccCcchhHHH-----HHHHhhccccceeeeeecccc
Q psy12736 513 AAEIV------EEGYQVFTI-QLSRGY---NEASFKEDLKS-----LYNLLGVKNQATVFLFTAAEI 564 (567)
Q Consensus 513 d~qi~------~e~fle~in-lL~~Ge---vp~Lf~~eE~~-----~i~~~~~~~~~~~~~~~~~~~ 564 (567)
|-+.. .+.+.+.|| -+..|- |..=++++|+. .|. +.+..-..+.-+.|.++
T Consensus 254 DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~-SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 254 DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERIS-SRLLGNFTLLKFYGEDI 319 (329)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHH-HHHHcCCEEEEecCcCh
Confidence 75433 245667777 555442 22223456663 354 66766677777777664
No 330
>PRK04328 hypothetical protein; Provisional
Probab=92.59 E-value=0.11 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|..+++.||||||||++..+++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999999998865
No 331
>PRK04040 adenylate kinase; Provisional
Probab=92.56 E-value=0.088 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-++++|++|||||++++.+.+.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988774
No 332
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.55 E-value=0.12 Score=59.60 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 168 SFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 168 ~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|.+++-...-..+...-++.+...+.|||++|++|||||.+++.+-..
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4445544444444455567777789999999999999999998876543
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.54 E-value=0.063 Score=54.93 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-++++||+|+|||+++..+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999887654
No 334
>KOG0731|consensus
Probab=92.53 E-value=0.063 Score=61.12 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
--+=|||+||||||||.+++.....
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcc
Confidence 3467999999999999999987653
No 335
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=0.12 Score=50.62 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHHHhcCCC-eEEeccCCCCchhhHHHHHhccCCC
Q psy12736 185 ILSLMNEIKRP-CIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 185 ll~~ll~~~~p-vLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
+++.+..++.- .|+.||||||||++++++-+.+...
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 66777777775 9999999999999999988776543
No 336
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.47 E-value=0.076 Score=58.84 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.+||+||||||||++++.+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999887654
No 337
>PRK03839 putative kinase; Provisional
Probab=92.46 E-value=0.08 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++++|++|||||++.+.+-+.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
No 338
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.46 E-value=0.6 Score=46.45 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=27.6
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHH---cCCeEEEEE
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFA---AGYQVFTIQ 479 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i---~~~~~~~i~ 479 (567)
.|..|+||-|..|+||.|++|-+... .|..++++.
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 47889999999999999999977553 355565553
No 339
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.42 E-value=0.13 Score=53.89 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=0.0
Q ss_pred ccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHH
Q psy12736 172 ILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 172 i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~ 213 (567)
++-......+..-.+..+...+.||||.|++||||+++++.+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~i 42 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARL 42 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHH
No 340
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=92.41 E-value=0.093 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||+++++++..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 341
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.40 E-value=0.056 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEeccCCCCchhhHHHHHhccCCC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
|.+||+.|||||+++..+++.+...
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHc
Confidence 6899999999999999999887644
No 342
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=92.40 E-value=0.09 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.4
Q ss_pred eEEeccCCCCchhhHHHHHhc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~ 216 (567)
|+++|++|+|||+++.++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 343
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.40 E-value=0.097 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=20.7
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.|+++|++|+|||++++.++..-.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~ 25 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKF 25 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999886543
No 344
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.40 E-value=0.097 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
-|+++|++|+|||+++++++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.39 E-value=0.15 Score=49.19 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHhcCC-CeEEeccCCCCchhhHHHHHhcc
Q psy12736 184 WILSLMNEIKR-PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 184 ~ll~~ll~~~~-pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+..++.++. -+++.||+|||||.++..+...+
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 34455555554 56677999999999998876654
No 346
>PRK09087 hypothetical protein; Validated
Probab=92.36 E-value=0.36 Score=47.73 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.3
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCe
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQ 474 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~ 474 (567)
.+.|.|++||||+.|++..+.-.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~ 71 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL 71 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 48999999999999999877554443
No 347
>KOG0729|consensus
Probab=92.36 E-value=0.13 Score=51.30 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=26.0
Q ss_pred HHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcce
Q psy12736 188 LMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223 (567)
Q Consensus 188 ~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~ 223 (567)
+=+.--+-|||.||||||||.+.+...++- +..|+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrt-dacfi 240 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRT-DACFI 240 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhccc-CceEE
Confidence 334556789999999999999998776653 33444
No 348
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.35 E-value=0.11 Score=50.44 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...-|.++|++|||||++++.+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999888776
No 349
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=92.27 E-value=0.082 Score=47.97 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..+.++|++|+|||++++.++..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998754
No 350
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=92.24 E-value=0.079 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.5
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|.++|++|+|||++++++...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999988754
No 351
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=92.24 E-value=0.1 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.0
Q ss_pred eEEeccCCCCchhhHHHHHhc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~ 216 (567)
++++|++|+|||+++.+++..
T Consensus 2 i~vvG~~~~GKtsli~~~~~~ 22 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTK 22 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 789999999999999998754
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.22 E-value=0.087 Score=56.39 Aligned_cols=46 Identities=7% Similarity=0.241 Sum_probs=31.2
Q ss_pred ChHHHHHHHH----HHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhc
Q psy12736 399 DYSAVGHLFT----EILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRL 445 (567)
Q Consensus 399 d~~~l~~~~~----~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~ 445 (567)
+.+.+..++. ..+++|..-. .....+|.+-++|++.|++++--.+.
T Consensus 334 ~~edL~rILteP~nsLikQy~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~ 383 (441)
T TIGR00390 334 TTDDFERILTEPKNSLIKQYKALM-KTEGVNIEFSDEAIKRIAELAYNVNE 383 (441)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHH-hhcCcEEEEeHHHHHHHHHHHHHhcc
Confidence 5566666663 4556666432 14568899999999999998755443
No 353
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.22 E-value=0.066 Score=55.84 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=31.5
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC--CCcceeee-----cCCCCCceEEEEe
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS--PDKYLVIA-----ELPPTPAKFHYIF 239 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~--~~~~~~~~-----egPp~gkk~v~iF 239 (567)
++.|.-+.|+||+|||||++++-+ ..+. +...+.++ +-||..+..-++|
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~I-AGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMI-AGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH-hCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 456788999999999999998654 3332 22233333 2566666555455
No 354
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=92.21 E-value=0.1 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||+++++++.+-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~ 24 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV 24 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999763
No 355
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.20 E-value=0.71 Score=48.26 Aligned_cols=102 Identities=11% Similarity=0.137 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcC---CeEEEEEecCCCChhhHHHHHHH----HHH----
Q psy12736 430 EDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAG---YQVFTIQLSRGYNEASFKEDLKS----LYN---- 498 (567)
Q Consensus 430 ~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~---~~~~~i~~~k~y~~~~f~edLk~----~~~---- 498 (567)
..++..+.+-.+-+.....++|+.|.+||||..+++..-..+. ..++.++... +....+..+|-. .+.
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~-~~~~~~~~~lfg~~~~~~~g~~~ 90 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA-LNENLLDSELFGHEAGAFTGAQK 90 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC-CCHHHHHHHHccccccccCCccc
Confidence 3455555555555556688999999999999999998766654 4577777664 233333333311 000
Q ss_pred -Hhcc--CCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 499 -LLGV--KNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 499 -~ag~--~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
..|. ....-++++++-+-......+.+- +|.+|.
T Consensus 91 ~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 91 RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 0110 112335667776666666666665 665554
No 356
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=92.19 E-value=0.1 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=20.6
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++.+++..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999865
No 357
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=92.18 E-value=0.1 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++++++..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998864
No 358
>PRK05642 DNA replication initiation factor; Validated
Probab=92.18 E-value=0.16 Score=50.53 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=0.0
Q ss_pred ccccccCcchhhHHHHHHHHHhcCC----CeEEeccCCCCchhhHHHHHhcc
Q psy12736 170 GDILVPTTDSTKLTWILSLMNEIKR----PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 170 ~~i~VpT~dtvR~~~ll~~ll~~~~----pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+-+|+.....-..++-+..-..+. |++|+||+|||||.+++.+.+.+
T Consensus 18 fdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 18 FANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred ccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHH
No 359
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.18 E-value=0.085 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999988654
No 360
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=92.17 E-value=0.11 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.++|++|+|||+++++++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 361
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=92.17 E-value=0.088 Score=48.25 Aligned_cols=22 Identities=18% Similarity=0.603 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999875
No 362
>PRK13947 shikimate kinase; Provisional
Probab=92.16 E-value=0.093 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+++++|++|||||++.+.+-+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 69999999999999998877765
No 363
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.16 E-value=0.14 Score=57.09 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=37.0
Q ss_pred CccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 169 FGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 169 ~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
|.+++--.....+....+..+-..+.|||+.|++||||+.+++.+-..
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 445555455556667777778889999999999999999999886543
No 364
>PLN02772 guanylate kinase
Probab=92.15 E-value=0.092 Score=55.74 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=24.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+++++++||+|+||+++++.++...+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~ 161 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPS 161 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccc
Confidence 4679999999999999999999887653
No 365
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=92.15 E-value=0.11 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||+++++++..-
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998764
No 366
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.14 E-value=0.075 Score=50.82 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=32.8
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccCCC-cceeee----cCCCCCceEEEEe
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD-KYLVIA----ELPPTPAKFHYIF 239 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~-~~~~~~----egPp~gkk~v~iF 239 (567)
-+..+.-|.+.||+|||||++.+-.---..+. .-+.++ || |++.+-+ +|
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~g-Pgaergv-VF 80 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG-PGAERGV-VF 80 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccC-CCcccee-Ee
Confidence 35678999999999999999886543322222 234444 35 4666777 77
No 367
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.14 E-value=1 Score=50.22 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCce-EEeccCCCcHhHHHHHHHH-Hc-----------------------CCeEEEEEecCCCChhhHHHHHHHHHHH--
Q psy12736 447 RGHC-MVVGVEGGGKRSLVRLASF-AA-----------------------GYQVFTIQLSRGYNEASFKEDLKSLYNL-- 499 (567)
Q Consensus 447 ~Gh~-LLvG~~GsGr~sl~rlaa~-i~-----------------------~~~~~~i~~~k~y~~~~f~edLk~~~~~-- 499 (567)
-.|+ |+.|+.|+||+++++.-|. +. +..++++.-..+-+.. +++.+...
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId----~IRelie~~~ 110 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGID----DIRELIEQTK 110 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHH----HHHHHHHHHh
Confidence 4577 8999999999999985543 32 1245555443333454 44444443
Q ss_pred -hccCCCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeee
Q psy12736 500 -LGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 500 -ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
....+..-|+++.+.+-.... ..| ||.+=| +.=+|...+..+|. .+++..+..+-+
T Consensus 111 ~~P~~~~~KVvIIDEad~Lt~~---A~NALLK~LEEpp~~t~FIL~ttd~~kL~-~tI~SRc~~~~F 173 (535)
T PRK08451 111 YKPSMARFKIFIIDEVHMLTKE---AFNALLKTLEEPPSYVKFILATTDPLKLP-ATILSRTQHFRF 173 (535)
T ss_pred hCcccCCeEEEEEECcccCCHH---HHHHHHHHHhhcCCceEEEEEECChhhCc-hHHHhhceeEEc
Confidence 223355667788887666553 233 333222 22244445556665 666666655544
No 368
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=92.13 E-value=0.1 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++++++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 369
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=92.13 E-value=0.1 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
++++|++|+|||+++++++.+-
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~ 22 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA 22 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC
Confidence 5799999999999999988753
No 370
>PRK00625 shikimate kinase; Provisional
Probab=92.13 E-value=0.095 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+++|+|.+|||||++.+.+-+.+.
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
No 371
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=92.13 E-value=0.082 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++|+|+||+|||++++.+|.+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~ 23 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGK 23 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999865
No 372
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.12 E-value=0.1 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.|+++|++|+|||+++++++..-
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~ 24 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY 24 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 373
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.12 E-value=0.52 Score=49.30 Aligned_cols=107 Identities=18% Similarity=0.102 Sum_probs=65.6
Q ss_pred Cce-EEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEec---CCCChhhHHHHHHHHHHH
Q psy12736 448 GHC-MVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLS---RGYNEASFKEDLKSLYNL 499 (567)
Q Consensus 448 Gh~-LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~---k~y~~~~f~edLk~~~~~ 499 (567)
.|+ |+.|+.|+||+++++--|....| +++.++.. +..+..+.|+ +.+-+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~~~ 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFVVQ 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHHhh
Confidence 565 68999999999998755443322 45555442 4577777776 3333433
Q ss_pred hccCCCcEEEEEecCcccchhhhHHhh-hccCCc-----cccCcchhHHHHHHHhhccccceeeee
Q psy12736 500 LGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY-----NEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 500 ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge-----vp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
....+..-|+++.+.+-.++ +-.| ||.+=| +.=++..+..+.|. ..++..+..+-+
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~---~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll-~TI~SRc~~~~~ 162 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR---NAANALLKSLEEPSGDTVLLLISHQPSRLL-PTIKSRCQQQAC 162 (328)
T ss_pred ccccCCCeEEEECChhhCCH---HHHHHHHHHHhCCCCCeEEEEEECChhhCc-HHHHhhceeeeC
Confidence 44455555566777665554 5667 765433 22356666777775 777776666655
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.12 E-value=0.12 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.1
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++||+|||||++++.+...+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999998877665
No 375
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.09 Score=51.89 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.5
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.|+||+|+|||++++-+..-+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998776544
No 376
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=92.10 E-value=0.092 Score=48.00 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=19.6
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||++++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 377
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.10 E-value=0.16 Score=49.23 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=27.3
Q ss_pred HHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc
Q psy12736 436 LTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 436 i~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
+.+|.+.+.. +.++++|.|+.|+||+||.+-+....
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4455566665 47788999999999999998666655
No 378
>PLN02199 shikimate kinase
Probab=92.10 E-value=0.64 Score=47.64 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=49.3
Q ss_pred HHHHHHHHhc--CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE--------------ecCCCChhhHHHHHHHHHHH
Q psy12736 436 LTRIHRALRL--SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ--------------LSRGYNEASFKEDLKSLYNL 499 (567)
Q Consensus 436 i~ri~RvL~~--p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~--------------~~k~y~~~~f~edLk~~~~~ 499 (567)
+.+.++-+.. ++-+++|+|..||||+++.+..|-..++.++... +-+.+|...|++--..++.+
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~ 168 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKK 168 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5555555544 3558899999999999999999998899888653 11247778888777777777
Q ss_pred hc
Q psy12736 500 LG 501 (567)
Q Consensus 500 ag 501 (567)
..
T Consensus 169 L~ 170 (303)
T PLN02199 169 LS 170 (303)
T ss_pred HH
Confidence 63
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.08 E-value=0.1 Score=49.64 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.5
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++.||||+|||+..+.+-+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999888764
No 380
>CHL00176 ftsH cell division protein; Validated
Probab=92.08 E-value=0.1 Score=59.31 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++||+||||||||++++.+....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887654
No 381
>PF13245 AAA_19: Part of AAA domain
Probab=92.07 E-value=0.28 Score=39.71 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHHhcCCCceEEeccCCCcHh-HHHHHHHHHc
Q psy12736 441 RALRLSRGHCMVVGVEGGGKR-SLVRLASFAA 471 (567)
Q Consensus 441 RvL~~p~Gh~LLvG~~GsGr~-sl~rlaa~i~ 471 (567)
+.++ +.+-+++.|++||||+ +++++++...
T Consensus 5 ~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 5 RALA-GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred HHHh-hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555 4555677999999999 6677776655
No 382
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.07 E-value=0.1 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.7
Q ss_pred eEEeccCCCCchhhHHHHHhc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~ 216 (567)
|.++|++|+|||++++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999988764
No 383
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.06 E-value=0.62 Score=50.79 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=60.2
Q ss_pred HHHhcCC--CceEEeccCCCcHhHHHHHHHHH-c----CCeEEEEEecCCCChhhHHHHHHHHHHHhc-------cCCCc
Q psy12736 441 RALRLSR--GHCMVVGVEGGGKRSLVRLASFA-A----GYQVFTIQLSRGYNEASFKEDLKSLYNLLG-------VKNQA 506 (567)
Q Consensus 441 RvL~~p~--Gh~LLvG~~GsGr~sl~rlaa~i-~----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag-------~~~~~ 506 (567)
++...|+ -+++|.|++|+||+.|++..+.- . +..+.-++ ..+|..++...+.... ..+++
T Consensus 122 ~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~~~~f~~~~~~~~ 195 (440)
T PRK14088 122 EVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGKLNEFREKYRKKV 195 (440)
T ss_pred HHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 3444554 25899999999999999876653 2 34555443 3345555444332111 01245
Q ss_pred EEEEEecCccc------chhhhHHhh-hccCCccccCcc----hhHHHHHHHhhcc
Q psy12736 507 TVFLFTAAEIV------EEGYQVFTI-QLSRGYNEASFK----EDLKSLYNLLGVK 551 (567)
Q Consensus 507 ~vfl~~d~qi~------~e~fle~in-lL~~Gevp~Lf~----~eE~~~i~~~~~~ 551 (567)
-+++++|-|.. .+.+++.+| +...|- +-+++ ++++..+. ..++
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~-~rL~ 249 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQ-DRLV 249 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHH-HHHh
Confidence 67888888743 246778888 777664 33333 34665554 4444
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.03 E-value=0.074 Score=52.35 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=22.2
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.|.-|-++||+|||||++++ ++..+.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn-iig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN-LLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH-HHhccc
Confidence 4578889999999999999885 444443
No 385
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=92.02 E-value=0.11 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.5
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||++++++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999998865
No 386
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.01 E-value=0.096 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||++++.++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 387
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.51 Score=53.29 Aligned_cols=64 Identities=30% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCce-EEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHH-----------HHHHHHHHHhccCCCcEEEE
Q psy12736 446 SRGHC-MVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFK-----------EDLKSLYNLLGVKNQATVFL 510 (567)
Q Consensus 446 p~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~-----------edLk~~~~~ag~~~~~~vfl 510 (567)
-.|.+ .|||++|.||+||.+=.|-..|-+++.+.+.--=+.+|-| --+-+.|++||.+| |+.+|
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N-Pv~LL 423 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN-PVFLL 423 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcC-CeEEe
Confidence 35666 6999999999999999999999999999876322333222 11346788999765 55443
No 388
>KOG1970|consensus
Probab=91.95 E-value=0.12 Score=56.26 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHh---------cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNE---------IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~---------~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++.|++ .++=+||+||+|||||++|+-+-+.+
T Consensus 94 Vk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 94 VKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
No 389
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.95 E-value=0.29 Score=45.81 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=20.7
Q ss_pred CceEEeccCCCcHhHHHH-HHHHHcCC--eEEEEEecC
Q psy12736 448 GHCMVVGVEGGGKRSLVR-LASFAAGY--QVFTIQLSR 482 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~r-laa~i~~~--~~~~i~~~k 482 (567)
-+++++|.+|+||+++.+ ++..+... -+..++...
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 457999999999999988 55544432 155555443
No 390
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=91.94 E-value=0.11 Score=59.26 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=26.0
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+...+.+...+++.||||||||+++..++..+
T Consensus 166 v~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 166 VSFALSSKDLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred HHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34456666789999999999999999887664
No 391
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.94 E-value=0.14 Score=56.94 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=41.5
Q ss_pred CCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc--CCCcceeee
Q psy12736 168 SFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL--SPDKYLVIA 226 (567)
Q Consensus 168 ~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l--~~~~~~~~~ 226 (567)
.|.+++--.....+....++.+-....|||+.|++||||+++++.+-... .+.-|+.+|
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~in 270 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAIN 270 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEec
Confidence 34445544555556677777788899999999999999999998865432 233455554
No 392
>KOG0739|consensus
Probab=91.93 E-value=0.34 Score=49.25 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=49.3
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHH----HHHHHHHHHhccCCCcEEEEEec
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFK----EDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~----edLk~~~~~ag~~~~~~vfl~~d 513 (567)
.|-.-+||-|++|+||.=|++-+|--++..+|++.-+. =++-|. .-+|+++..| .+++|..+.+++
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD--LvSKWmGESEkLVknLFemA-Re~kPSIIFiDE 233 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD--LVSKWMGESEKLVKNLFEMA-RENKPSIIFIDE 233 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH--HHHHHhccHHHHHHHHHHHH-HhcCCcEEEeeh
Confidence 34456899999999999999999999999999986432 123343 3356666666 588998887765
No 393
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.93 E-value=0.45 Score=49.36 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 430 EDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 430 ~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.++++++.+-.|-+++ ..++.|+|.+||||+++.+..|-..|+.++.+
T Consensus 117 ~~~l~~~~~~~~~~~~-~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 117 RDALSGMLGAGRRAAR-RRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred HHHHHHHHhhhhhccC-CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 3667777777777754 56899999999999999999998889988865
No 394
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.92 E-value=0.1 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998865
No 395
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.90 E-value=0.13 Score=56.88 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.||+||+|||||++++-+.+.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999998877653
No 396
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=91.89 E-value=0.097 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||++++.++..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 397
>PRK13531 regulatory ATPase RavA; Provisional
Probab=91.89 E-value=0.22 Score=54.47 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=24.8
Q ss_pred HhcCCCceEEeccCCCcHhHHHHHHHHHc
Q psy12736 443 LRLSRGHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 443 L~~p~Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
....+||+||.|++|+||+.++|..+...
T Consensus 35 aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 34679999999999999999998777654
No 398
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.88 E-value=0.098 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=23.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+..-+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 468899999999999999998776544
No 399
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.86 E-value=0.12 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++.+++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999998764
No 400
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.84 E-value=0.094 Score=55.40 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHH--hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 185 ILSLMN--EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 185 ll~~ll--~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+++.++ ..|+..+++||+|||||++++.+++.+..
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 666665 57899999999999999999998887643
No 401
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=91.83 E-value=0.12 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+.++|++|+|||+++++++....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCC
Confidence 35689999999999999988776543
No 402
>PRK06547 hypothetical protein; Provisional
Probab=91.83 E-value=0.11 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|++.|++|||||++.+.+...+.
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
No 403
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=91.80 E-value=0.099 Score=47.19 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
|..+.++|++|+|||++++.++..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999988754
No 404
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.78 E-value=0.1 Score=50.63 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+..-+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998776544
No 405
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.73 E-value=0.15 Score=48.57 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCC--eEEeccCCCCchhhHHHHHhcc
Q psy12736 182 LTWILSLMNEIKRP--CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 182 ~~~ll~~ll~~~~p--vLl~GptGtGKT~~i~~~l~~l 217 (567)
|..+.+.+-+++.| .|+.||+|+|||+++..+.+.+
T Consensus 1 ~~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 1 YQQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred ChHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
No 406
>PRK13949 shikimate kinase; Provisional
Probab=91.71 E-value=0.12 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++++|+|++|+|||++.+.+-..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999998766554
No 407
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.70 E-value=0.68 Score=54.10 Aligned_cols=68 Identities=29% Similarity=0.390 Sum_probs=45.2
Q ss_pred CCCc-eEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHH-----------HHHHHHHHHhccCCCcEEEEEec
Q psy12736 446 SRGH-CMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFK-----------EDLKSLYNLLGVKNQATVFLFTA 513 (567)
Q Consensus 446 p~Gh-~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~-----------edLk~~~~~ag~~~~~~vfl~~d 513 (567)
+.|. ++|+|++|+||+++++..|...+.+++.+..+..-+..+.+ ..+...+.++|..+ | |+++++
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~-villDE 424 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-P-LFLLDE 424 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-C-EEEEEC
Confidence 3454 68999999999999999999999998888765322222221 12334556677544 5 466665
Q ss_pred Cc
Q psy12736 514 AE 515 (567)
Q Consensus 514 ~q 515 (567)
-+
T Consensus 425 id 426 (784)
T PRK10787 425 ID 426 (784)
T ss_pred hh
Confidence 43
No 408
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.67 E-value=0.14 Score=53.32 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=29.5
Q ss_pred CcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 176 TTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 176 T~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+....|+..+.+. .-...+|+|||+|+|||+.++.++.+
T Consensus 8 ~l~~~r~~~~~k~--Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 8 NLPNQRHRKLSKK--GIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cchHHHHHHHHhc--CCceEEEEecCCCCchhHHHHhhhHh
Confidence 4445555555543 34568999999999999999999876
No 409
>KOG1803|consensus
Probab=91.67 E-value=0.17 Score=55.80 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.....+...+.++.+.++.||||||||.++..++..+
T Consensus 189 SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 189 SQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred HHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH
Confidence 3445566667777999999999999999998887765
No 410
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.66 E-value=0.12 Score=49.26 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=0.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|||||++.+.+-..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
No 411
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=91.65 E-value=0.12 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|.+|+|||+++++++..-
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~ 28 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRS 28 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999998753
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.65 E-value=0.11 Score=47.51 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+....
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999998765544
No 413
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.63 E-value=0.53 Score=44.37 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ 479 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~ 479 (567)
..+++|+|.+|+||+++++..|...++.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 457899999999999999999988888877653
No 414
>PRK08116 hypothetical protein; Validated
Probab=91.59 E-value=3 Score=42.28 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred ceEEeccCCCcHhHHHHHHHHH---cCCeEEEEEecCCCChhhHHHHHHHHHHHh----------ccCCCcEEEEEecCc
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFA---AGYQVFTIQLSRGYNEASFKEDLKSLYNLL----------GVKNQATVFLFTAAE 515 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i---~~~~~~~i~~~k~y~~~~f~edLk~~~~~a----------g~~~~~~vfl~~d~q 515 (567)
.++|.|.+|+||+.|+...+.- .+..+.-++ ..++.+.++..+... .+.+.+ +++++|-+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg 188 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLG 188 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEeccc
Confidence 3899999999999998866553 355555554 344444554433211 123333 67778865
Q ss_pred cc--chh----hhHHhh-hccCCccccC----cchhHHHH-----HHHhhccccceeeeeeccc
Q psy12736 516 IV--EEG----YQVFTI-QLSRGYNEAS----FKEDLKSL-----YNLLGVKNQATVFLFTAAE 563 (567)
Q Consensus 516 i~--~e~----fle~in-lL~~Gevp~L----f~~eE~~~-----i~~~~~~~~~~~~~~~~~~ 563 (567)
.. .+. +.+.|| ...+| .|-+ ++++|+.. ++ +.+.+-+...-+++.+
T Consensus 189 ~e~~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~-sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIY-DRILEMCTPVENEGKS 250 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHH-HHHHHcCEEEEeeCcC
Confidence 32 222 344444 43333 2333 33455543 44 5555555555556654
No 415
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.58 E-value=0.11 Score=49.50 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.0
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+..-.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998665443
No 416
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.57 E-value=0.11 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++++|++|||||++++.+...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999998877653
No 417
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.55 E-value=0.12 Score=50.37 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=23.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+..-+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998765543
No 418
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.55 E-value=0.11 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|.-+|+.||||||||++..+++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 4677999999999999999998864
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.55 E-value=0.12 Score=51.76 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=25.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
..|+.+++.||+|+|||++++.+.+.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 57899999999999999999998887653
No 420
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.54 E-value=0.13 Score=46.49 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++|++|||||++.+.+...+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
No 421
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.52 E-value=0.11 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 422
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.51 E-value=0.11 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-++++|++|||||++.+.+.+.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC
Confidence 3478899999999999999888763
No 423
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.51 E-value=0.14 Score=48.63 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.|..+.++|++|||||++.+.+...+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 366789999999999999988776543
No 424
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.51 E-value=0.12 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999998776543
No 425
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.51 E-value=0.11 Score=58.00 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=24.6
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.|+.+.++||+|||||++++-++.-.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999999999999999987776543
No 426
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=91.50 E-value=0.11 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.5
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+|+++|++|+|||++++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 4789999999999999998764
No 427
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.50 E-value=0.16 Score=57.68 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
.+...+.++.+++++||+|||||++++.+...++..
T Consensus 42 ~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 42 VIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred HHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 455566778899999999999999999988877643
No 428
>PRK14527 adenylate kinase; Provisional
Probab=91.49 E-value=0.094 Score=50.21 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++-++++||||||||++.+.+..++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45668999999999999998876654
No 429
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.49 E-value=0.11 Score=48.17 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...++++|++|+|||++++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 566999999999999999988764
No 430
>PRK06217 hypothetical protein; Validated
Probab=91.49 E-value=0.12 Score=49.23 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+++.|++|||||++.+.+-+.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
No 431
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=91.49 E-value=0.11 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++++++..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999865
No 432
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.48 E-value=0.14 Score=52.91 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=22.7
Q ss_pred HHHHHhcCC---CeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKR---PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~---pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+++.++ .+|++||+|+|||++++.+.+.+
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 334444443 44448999999999999887765
No 433
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.48 E-value=0.16 Score=49.60 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHhc----CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEI----KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~----~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++.++.. +.-++++|++|||||++..+++.+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455544 4559999999999999999988764
No 434
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.47 E-value=0.12 Score=55.31 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=31.6
Q ss_pred ChHHHHHHHH----HHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhc
Q psy12736 399 DYSAVGHLFT----EILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRL 445 (567)
Q Consensus 399 d~~~l~~~~~----~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~ 445 (567)
+.+.+..++. ..+++|-.-. .....+|.+-++|++.|++.+--.+.
T Consensus 336 ~~~dL~~ILteP~nsLikQy~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~ 385 (443)
T PRK05201 336 TEEDFVRILTEPKASLIKQYQALL-ATEGVTLEFTDDAIRRIAEIAYQVNE 385 (443)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHH-hhcCcEEEEcHHHHHHHHHHHHHhcc
Confidence 5566666663 3566666432 14568899999999999998765443
No 435
>KOG0745|consensus
Probab=91.47 E-value=0.13 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-+|||+||||||||.+.+.+-+-++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC
No 436
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.46 E-value=0.12 Score=50.04 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=23.1
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-+.++||+|+|||++++-+..-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998766543
No 437
>KOG0734|consensus
Probab=91.46 E-value=0.65 Score=50.72 Aligned_cols=61 Identities=23% Similarity=0.411 Sum_probs=45.3
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHH--------HHHHHHHhccCCCcEEEEEecC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKED--------LKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~ed--------Lk~~~~~ag~~~~~~vfl~~d~ 514 (567)
|.| +||+|++|+||+-|+|-.|--++-.+|... -+||.|- +|.++..| -+.-|+++.+++-
T Consensus 337 PKG-VLLvGPPGTGKTlLARAvAGEA~VPFF~~s------GSEFdEm~VGvGArRVRdLF~aA-k~~APcIIFIDEi 405 (752)
T KOG0734|consen 337 PKG-VLLVGPPGTGKTLLARAVAGEAGVPFFYAS------GSEFDEMFVGVGARRVRDLFAAA-KARAPCIIFIDEI 405 (752)
T ss_pred CCc-eEEeCCCCCchhHHHHHhhcccCCCeEecc------ccchhhhhhcccHHHHHHHHHHH-HhcCCeEEEEech
Confidence 444 799999999999999999988888888763 3344443 45666666 3567888888764
No 438
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.46 E-value=0.12 Score=49.97 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998776544
No 439
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.45 E-value=0.15 Score=51.38 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.++.+++|.||+|||||.++..+.+.+.
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 344899999999999999999998887765
No 440
>KOG0738|consensus
Probab=91.45 E-value=0.37 Score=50.66 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=48.1
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCC
Q psy12736 394 YEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGY 473 (567)
Q Consensus 394 Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~ 473 (567)
+..|.+.+..++.++|.+- -+ +.+++...|| +.|=-.+||+|++|+||+-|+|-.|.-|+-
T Consensus 211 W~DIagl~~AK~lL~EAVv---------lP---i~mPe~F~Gi-------rrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVV---------LP---IWMPEFFKGI-------RRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hHhhcchHHHHHHHHHHHh---------hh---hhhHHHHhhc-------ccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3445556666666655431 11 2334555554 578778999999999999999999999999
Q ss_pred eEEEEE
Q psy12736 474 QVFTIQ 479 (567)
Q Consensus 474 ~~~~i~ 479 (567)
.+|.|.
T Consensus 272 TFFNVS 277 (491)
T KOG0738|consen 272 TFFNVS 277 (491)
T ss_pred eEEEec
Confidence 999885
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.45 E-value=0.11 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred eEEeccCCCCchhhHHHHHhccCC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+-++|++|||||+++..++..+..
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHhh
Confidence 468899999999999999987753
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.44 E-value=0.11 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.5
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
+..|.-+.++||+|+|||++++-.+
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3468889999999999999998664
No 443
>PLN02674 adenylate kinase
Probab=91.43 E-value=0.18 Score=50.45 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred ccCcchhhHHHHH-HHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 174 VPTTDSTKLTWIL-SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 174 VpT~dtvR~~~ll-~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+|++|-....+-- .........+++.||||||||+..+.+-+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 11 VPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcC
No 444
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.41 E-value=0.13 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.4
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||++++.+....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 445
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=91.41 E-value=0.14 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|+++|++|+|||+++++++.+-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~ 24 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK 24 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998754
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.39 E-value=0.1 Score=50.66 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.-+.++||+|||||++++.+...+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355678999999999999988877654
No 447
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.38 E-value=0.12 Score=51.32 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|.-+.++||+|+|||++++-+..-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999866543
No 448
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=91.36 E-value=0.15 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|.++|++|+|||+++.+++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~ 23 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG 23 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3789999999999999998864
No 449
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=91.36 E-value=0.14 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||++++++...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998765
No 450
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=91.35 E-value=0.14 Score=47.30 Aligned_cols=22 Identities=14% Similarity=0.477 Sum_probs=19.8
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||++++++...
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998864
No 451
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.33 E-value=0.12 Score=48.02 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=25.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
.-..+.++|+||+|||++++.+...+....|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 3456899999999999999998877766544
No 452
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.31 E-value=0.13 Score=48.77 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.6
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+..-.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998765543
No 453
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=91.30 E-value=0.14 Score=56.59 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-++..+..++++++.||+|||||++++.+-.-++
T Consensus 203 al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 203 ALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred hhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 4555667899999999999999999988755444
No 454
>PHA02624 large T antigen; Provisional
Probab=91.29 E-value=0.19 Score=56.02 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHHh---cCCCeEEeccCCCCchhhHHHHHhccCCCcceeee--------c-CCCCCceEEEEe
Q psy12736 182 LTWILSLMNE---IKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA--------E-LPPTPAKFHYIF 239 (567)
Q Consensus 182 ~~~ll~~ll~---~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~--------e-gPp~gkk~v~iF 239 (567)
..-.++.+++ .++-++|.||+|||||++++.+++-+.... +.+| + ||....+++ +|
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~v-lsVNsPt~ks~FwL~pl~D~~~~-l~ 484 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKS-LNVNCPPDKLNFELGCAIDQFMV-VF 484 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeE-EEeeCCcchhHHHhhhhhhceEE-Ee
Confidence 3344555554 356789999999999999999998875432 2244 3 777888887 66
No 455
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.29 E-value=0.82 Score=45.15 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChh-hHHHHHHHHHHHhccCCCcEEEEEecCcccch-hhhH
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEA-SFKEDLKSLYNLLGVKNQATVFLFTAAEIVEE-GYQV 523 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~-~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e-~fle 523 (567)
++.++.++|++|+||.||.|-.+.+.+-.-=+|.+... +.. -=...+|+.-.++| ++|...++++. +.++
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~-~i~~~~~k~lr~~r~~iG-------mIfQ~~nLv~r~sv~~ 100 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGV-QITKLKGKELRKLRRDIG-------MIFQQFNLVPRLSVLE 100 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEeccc-chhccchHHHHHHHHhce-------eEeccCCcccccHHHH
Confidence 34467899999999999999888765544334433211 111 11245777766776 78888888753 3355
Q ss_pred Hh-h-hccCC----ccccCcchhHHHHHH
Q psy12736 524 FT-I-QLSRG----YNEASFKEDLKSLYN 546 (567)
Q Consensus 524 ~i-n-lL~~G----evp~Lf~~eE~~~i~ 546 (567)
.+ + .|+.- .+-++|+++|.....
T Consensus 101 NVl~grl~~~s~~~slfglfsk~dk~~Al 129 (258)
T COG3638 101 NVLLGRLGYTSTWRSLFGLFSKEDKAQAL 129 (258)
T ss_pred HHHhhhcccchHHHHHhCCCCHHHHHHHH
Confidence 32 2 33322 245899999987765
No 456
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.28 E-value=0.13 Score=50.06 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998776544
No 457
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=91.27 E-value=0.12 Score=46.98 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=18.4
Q ss_pred eEEeccCCCCchhhHHHHHh
Q psy12736 196 CIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~ 215 (567)
|.++|++|+|||++++.+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999883
No 458
>PLN02165 adenylate isopentenyltransferase
Probab=91.27 E-value=0.14 Score=53.41 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=0.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+..+.|+||||||||++...+-..+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
No 459
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.24 E-value=0.13 Score=48.59 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.4
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+...+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998876544
No 460
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.22 E-value=0.51 Score=48.33 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
|+.|+||.|++||||+++++..|...
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 55699999999999999997765543
No 461
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=91.20 E-value=0.2 Score=47.72 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.8
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..+..++++|.+|+|||++++.++..
T Consensus 124 l~~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 124 AKKGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred hhcCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999864
No 462
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=91.19 E-value=0.16 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|+|||+++++++...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~ 26 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY 26 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Confidence 368999999999999999998753
No 463
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.19 E-value=0.13 Score=46.68 Aligned_cols=22 Identities=14% Similarity=0.487 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++++++..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 464
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.19 E-value=0.2 Score=57.23 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=41.5
Q ss_pred CCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC--CCcceeee
Q psy12736 168 SFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS--PDKYLVIA 226 (567)
Q Consensus 168 ~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~--~~~~~~~~ 226 (567)
.|.+++--.....+..-.++.+...+.|||+.|++||||+++++.+-.... ...|+.+|
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vn 383 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVN 383 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEE
Confidence 344544444455566677777788999999999999999999988755432 23455554
No 465
>PRK08118 topology modulation protein; Reviewed
Probab=91.18 E-value=0.35 Score=45.42 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.1
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ 479 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~ 479 (567)
.++++|++||||+|+++..+-..+++++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4789999999999999999988888877664
No 466
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.17 E-value=0.16 Score=47.71 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.++.|+|+.|+|||++-+.+-+.+.
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred CCccEEEEcCCCCCHhHHHHHHHHHcC
No 467
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=91.17 E-value=0.15 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||+++++++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.16 E-value=0.14 Score=48.42 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+....
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998776543
No 469
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=91.15 E-value=0.15 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..++++|++|+|||+++++++..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 470
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.14 E-value=0.13 Score=49.95 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=23.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+..-+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468899999999999999998766543
No 471
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.13 E-value=0.13 Score=50.40 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.2
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+..-+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998776543
No 472
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.12 E-value=0.14 Score=48.85 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=24.4
Q ss_pred HhcCCC---eEEeccCCCCchhhHHHHHhccCCC
Q psy12736 190 NEIKRP---CIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 190 l~~~~p---vLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
-..++| +-+.||+|||||+++...++.+.++
T Consensus 7 a~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~ 40 (202)
T COG0378 7 AEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDE 40 (202)
T ss_pred HHhcCceEEEEecCCCCcCHHHHHHHHHHHHHhh
Confidence 344555 4566999999999999999988655
No 473
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.11 E-value=0.14 Score=49.78 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=22.8
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+..-+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998776543
No 474
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.11 E-value=0.12 Score=50.45 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.2
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|..+.++||+|+|||++++-+..-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999765443
No 475
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.11 E-value=0.14 Score=50.10 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=23.2
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-+.|+||+|+|||++++-+..-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4568889999999999999998766543
No 476
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.10 E-value=0.12 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEeccCCCCchhhHHHHHhccCC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+.++|++|||||+++..++..+..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999988753
No 477
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.09 E-value=0.14 Score=49.39 Aligned_cols=27 Identities=15% Similarity=0.039 Sum_probs=22.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|..+.++||+|+|||++++-+..-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999866554
No 478
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=91.08 E-value=0.25 Score=46.04 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..+..++...++++++||+|||||..+...+.
T Consensus 15 ~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~ 46 (201)
T smart00487 15 EAIEALLSGLRDVILAAPTGSGKTLAALLPAL 46 (201)
T ss_pred HHHHHHHcCCCcEEEECCCCCchhHHHHHHHH
Confidence 34455554448999999999999996655543
No 479
>KOG3347|consensus
Probab=91.07 E-value=0.16 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=0.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++|++|-||||||++..++-...
T Consensus 9 NILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh
No 480
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.05 E-value=0.15 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred eEEeccCCCCchhhHHHHHhccCC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
|-++||+|||||++.+.+...+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568999999999999998777654
No 481
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.04 E-value=0.13 Score=50.03 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.6
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|..+.++||+|+|||++++-+..-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 346889999999999999999876543
No 482
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.03 E-value=0.075 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.8
Q ss_pred HhcCCCeEEeccCCCCchhhHHHH
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNF 213 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~ 213 (567)
+..|.=|-++||+|||||++.+-+
T Consensus 26 v~~GEfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 446778889999999999998644
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.03 E-value=0.14 Score=49.67 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999998876544
No 484
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.03 E-value=0.15 Score=47.92 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|..+.++||+|+|||++++-+....
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 468899999999999999998776644
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.01 E-value=0.14 Score=50.74 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.++||+|+|||++++-+..-+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468889999999999999998776544
No 486
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.01 E-value=0.14 Score=50.44 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=24.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++|+.+.|-||||||.+++.++.++.
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998875
No 487
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=90.99 E-value=0.16 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||++++++..+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998865
No 488
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.98 E-value=0.13 Score=55.00 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++++||+|+|||+++..+...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999887654
No 489
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=90.97 E-value=0.14 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||+++.+++..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998865
No 490
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.96 E-value=0.14 Score=50.48 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.2
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|..+.|+||+|||||++++-+..-+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998655443
No 491
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.96 E-value=0.17 Score=46.72 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..+.++|+||+|||++++.++..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 456889999999999999998764
No 492
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=90.94 E-value=0.17 Score=46.93 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=19.6
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++++|++|+|||++++.+...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 493
>PRK01184 hypothetical protein; Provisional
Probab=90.94 E-value=0.14 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.1
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-++++|++|||||++.+ +++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 37899999999999754 55543
No 494
>KOG0737|consensus
Probab=90.93 E-value=0.12 Score=53.88 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
|++-.+.|||.||||||||++.+..-+.
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHH
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.92 E-value=0.11 Score=48.19 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.9
Q ss_pred eEEeccCCCCchhhHHHHHhc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~ 216 (567)
|.++|++|||||++++.+-..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999988765
No 496
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.91 E-value=0.15 Score=47.70 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.0
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..|.-+.++||+|+|||++++-+...++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999988766543
No 497
>PRK07261 topology modulation protein; Provisional
Probab=90.87 E-value=0.7 Score=43.46 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=24.5
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.++++|.+||||+|+++..+-..+...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 368999999999999998877777766554
No 498
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=90.85 E-value=0.18 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHh
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
.+..|+++|++|+|||+++.++..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Confidence 356799999999999999999864
No 499
>PRK02496 adk adenylate kinase; Provisional
Probab=90.84 E-value=0.14 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++.||+|||||++.+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999998876654
No 500
>KOG1942|consensus
Probab=90.84 E-value=0.2 Score=50.69 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=24.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
..|+.||+.||+|||||++.-.+-+.+-+
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 46999999999999999999888776643
Done!