Query psy12736
Match_columns 567
No_of_seqs 278 out of 1746
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:22:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1E-100 3E-105 953.0 38.5 501 30-559 1135-1758(3245)
2 4akg_A Glutathione S-transfera 100.0 1.1E-95 4E-100 906.6 36.0 478 52-559 1134-1721(2695)
3 4akg_A Glutathione S-transfera 99.4 1.1E-11 3.7E-16 155.9 21.4 334 170-558 622-1071(2695)
4 3vkg_A Dynein heavy chain, cyt 99.1 8.9E-10 3E-14 139.4 20.2 407 86-558 492-1053(3245)
5 1r6b_X CLPA protein; AAA+, N-t 98.9 5.8E-08 2E-12 111.1 19.4 104 426-533 460-586 (758)
6 3pxi_A Negative regulator of g 98.7 1.1E-07 3.7E-12 108.9 14.7 103 426-534 493-609 (758)
7 1qvr_A CLPB protein; coiled co 98.6 7E-07 2.4E-11 103.4 16.8 103 426-532 560-688 (854)
8 3cf2_A TER ATPase, transitiona 98.3 5.1E-07 1.8E-11 102.7 5.8 68 445-515 509-580 (806)
9 1ypw_A Transitional endoplasmi 98.0 7E-06 2.4E-10 94.3 7.0 69 445-514 509-579 (806)
10 1jbk_A CLPB protein; beta barr 97.6 0.00029 9.9E-09 64.6 10.4 110 426-538 24-157 (195)
11 2p65_A Hypothetical protein PF 97.6 0.00023 8E-09 65.2 9.5 93 446-538 42-158 (187)
12 1d2n_A N-ethylmaleimide-sensit 97.5 0.00048 1.6E-08 68.2 10.7 103 426-529 35-159 (272)
13 2chg_A Replication factor C sm 97.2 0.0016 5.4E-08 61.1 10.7 80 447-526 38-123 (226)
14 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.0022 7.5E-08 62.5 10.5 71 446-517 38-110 (262)
15 3pfi_A Holliday junction ATP-d 97.0 0.0029 9.9E-08 64.4 11.4 100 426-532 31-134 (338)
16 3h4m_A Proteasome-activating n 97.0 0.0026 9E-08 63.0 10.1 72 445-517 49-122 (285)
17 4b4t_J 26S protease regulatory 96.8 0.0059 2E-07 63.9 11.5 68 445-515 180-251 (405)
18 1qvr_A CLPB protein; coiled co 96.8 0.003 1E-07 73.0 9.9 102 436-537 179-304 (854)
19 3pvs_A Replication-associated 96.8 0.0048 1.6E-07 65.9 10.8 82 438-521 40-122 (447)
20 3uk6_A RUVB-like 2; hexameric 96.8 0.0055 1.9E-07 63.0 10.9 55 425-479 45-104 (368)
21 3bos_A Putative DNA replicatio 96.8 0.0011 3.6E-08 63.5 5.0 50 167-217 25-76 (242)
22 2v1u_A Cell division control p 96.7 0.0052 1.8E-07 63.1 10.2 74 445-518 42-143 (387)
23 3n70_A Transport activator; si 96.7 0.001 3.4E-08 59.4 4.1 37 181-217 12-48 (145)
24 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.002 6.8E-08 65.7 6.6 30 193-222 45-74 (322)
25 3co5_A Putative two-component 96.7 0.00096 3.3E-08 59.4 3.5 36 181-216 15-50 (143)
26 3syl_A Protein CBBX; photosynt 96.6 0.0045 1.5E-07 62.0 8.5 70 444-517 64-142 (309)
27 3ec2_A DNA replication protein 96.6 0.0016 5.5E-08 60.0 4.7 27 191-217 36-62 (180)
28 4fcw_A Chaperone protein CLPB; 96.6 0.0046 1.6E-07 61.9 8.4 99 430-532 23-147 (311)
29 4b4t_I 26S protease regulatory 96.6 0.0098 3.4E-07 62.7 10.9 102 393-515 180-285 (437)
30 3n70_A Transport activator; si 96.6 0.0065 2.2E-07 54.0 8.3 87 431-526 8-97 (145)
31 4b4t_M 26S protease regulatory 96.5 0.0072 2.5E-07 64.0 9.8 68 445-515 213-284 (434)
32 1sxj_A Activator 1 95 kDa subu 96.5 0.0041 1.4E-07 67.6 8.2 88 447-534 77-181 (516)
33 3u61_B DNA polymerase accessor 96.5 0.0046 1.6E-07 62.5 8.0 89 426-518 28-118 (324)
34 3pvs_A Replication-associated 96.5 0.0026 8.9E-08 67.9 6.3 119 186-316 41-220 (447)
35 4b4t_L 26S protease subunit RP 96.5 0.014 4.6E-07 62.0 11.7 68 445-515 213-284 (437)
36 2w58_A DNAI, primosome compone 96.5 0.0019 6.3E-08 60.6 4.5 24 194-217 55-78 (202)
37 2bjv_A PSP operon transcriptio 96.5 0.0018 6E-08 63.7 4.5 38 180-217 16-53 (265)
38 4b4t_H 26S protease regulatory 96.5 0.013 4.4E-07 62.3 11.3 68 445-515 241-312 (467)
39 1lv7_A FTSH; alpha/beta domain 96.5 0.0062 2.1E-07 59.4 8.4 67 447-514 45-113 (257)
40 4b4t_K 26S protease regulatory 96.5 0.014 4.7E-07 61.8 11.5 100 393-514 170-274 (428)
41 3vfd_A Spastin; ATPase, microt 96.4 0.0066 2.3E-07 63.3 8.3 72 444-516 145-218 (389)
42 3eie_A Vacuolar protein sortin 96.4 0.0062 2.1E-07 61.8 7.8 71 445-516 49-121 (322)
43 1njg_A DNA polymerase III subu 96.3 0.014 4.8E-07 55.1 9.8 75 448-526 46-147 (250)
44 1ex7_A Guanylate kinase; subst 96.3 0.0016 5.6E-08 61.0 3.1 27 193-219 1-27 (186)
45 2chg_A Replication factor C sm 96.3 0.0013 4.4E-08 61.7 2.4 31 187-217 30-62 (226)
46 2chq_A Replication factor C sm 96.3 0.0029 1E-07 63.3 5.0 79 448-526 39-123 (319)
47 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0085 2.9E-07 60.3 8.4 79 446-530 37-116 (324)
48 2zan_A Vacuolar protein sortin 96.3 0.0066 2.3E-07 64.7 7.8 28 192-219 166-193 (444)
49 3d8b_A Fidgetin-like protein 1 96.3 0.013 4.6E-07 60.3 9.8 89 426-515 86-186 (357)
50 1l8q_A Chromosomal replication 96.3 0.004 1.4E-07 63.1 5.7 51 166-217 7-61 (324)
51 2x8a_A Nuclear valosin-contain 96.3 0.016 5.4E-07 57.5 9.9 71 443-515 41-113 (274)
52 3b9p_A CG5977-PA, isoform A; A 96.2 0.015 5.1E-07 57.9 9.7 72 444-516 51-124 (297)
53 4b4t_M 26S protease regulatory 96.2 0.0037 1.3E-07 66.3 5.0 27 192-218 214-240 (434)
54 1um8_A ATP-dependent CLP prote 96.2 0.01 3.6E-07 61.4 8.3 77 444-520 69-152 (376)
55 1r6b_X CLPA protein; AAA+, N-t 96.1 0.017 5.9E-07 65.6 10.7 96 438-534 197-317 (758)
56 2ce7_A Cell division protein F 96.1 0.023 7.8E-07 61.0 11.0 70 445-516 48-119 (476)
57 1l8q_A Chromosomal replication 96.1 0.014 4.9E-07 58.9 8.8 72 440-517 27-110 (324)
58 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.017 6E-07 58.6 9.5 72 445-517 43-117 (322)
59 4b4t_J 26S protease regulatory 96.1 0.0062 2.1E-07 63.8 6.1 28 191-218 180-207 (405)
60 1sxj_B Activator 1 37 kDa subu 96.1 0.0068 2.3E-07 60.7 6.3 72 448-519 43-121 (323)
61 1jbk_A CLPB protein; beta barr 96.1 0.0021 7.1E-08 58.7 2.2 27 192-218 42-68 (195)
62 3te6_A Regulatory protein SIR3 96.1 0.0028 9.4E-08 64.5 3.3 37 182-218 32-70 (318)
63 1fnn_A CDC6P, cell division co 96.0 0.046 1.6E-06 56.1 12.6 77 449-528 46-149 (389)
64 1ofh_A ATP-dependent HSL prote 96.0 0.013 4.4E-07 58.3 8.1 73 446-518 49-129 (310)
65 2c9o_A RUVB-like 1; hexameric 96.0 0.018 6.3E-07 61.4 9.7 66 446-514 62-135 (456)
66 2qp9_X Vacuolar protein sortin 96.0 0.0095 3.2E-07 61.5 7.1 71 445-517 82-155 (355)
67 3pxg_A Negative regulator of g 96.0 0.0067 2.3E-07 65.1 6.1 82 426-512 182-274 (468)
68 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0044 1.5E-07 60.3 4.2 27 191-217 37-63 (262)
69 3cf2_A TER ATPase, transitiona 96.0 0.012 4.2E-07 66.9 8.4 69 445-516 236-308 (806)
70 3t15_A Ribulose bisphosphate c 96.0 0.011 3.7E-07 59.3 7.1 65 449-514 38-108 (293)
71 2dhr_A FTSH; AAA+ protein, hex 96.0 0.022 7.5E-07 61.5 9.9 69 445-515 63-133 (499)
72 1iqp_A RFCS; clamp loader, ext 95.9 0.014 4.7E-07 58.5 7.7 74 448-521 47-126 (327)
73 4b4t_L 26S protease subunit RP 95.9 0.0067 2.3E-07 64.3 5.4 27 192-218 214-240 (437)
74 3hws_A ATP-dependent CLP prote 95.9 0.0072 2.5E-07 62.4 5.5 70 446-515 50-126 (363)
75 3h4m_A Proteasome-activating n 95.8 0.0045 1.6E-07 61.2 3.7 27 191-217 49-75 (285)
76 1ixz_A ATP-dependent metallopr 95.8 0.035 1.2E-06 53.9 9.9 101 394-514 15-117 (254)
77 3uk6_A RUVB-like 2; hexameric 95.8 0.0046 1.6E-07 63.5 3.7 37 182-218 56-95 (368)
78 2r62_A Cell division protease 95.8 0.0059 2E-07 59.9 4.2 26 192-217 43-68 (268)
79 2bjv_A PSP operon transcriptio 95.8 0.029 1E-06 54.8 9.2 96 431-531 13-127 (265)
80 4b4t_H 26S protease regulatory 95.8 0.009 3.1E-07 63.5 5.7 28 191-218 241-268 (467)
81 2chq_A Replication factor C sm 95.7 0.004 1.4E-07 62.3 2.8 32 186-217 29-62 (319)
82 2p65_A Hypothetical protein PF 95.7 0.0027 9.4E-08 57.8 1.3 27 192-218 42-68 (187)
83 2oap_1 GSPE-2, type II secreti 95.7 0.01 3.4E-07 64.4 6.0 38 184-221 251-288 (511)
84 1g8p_A Magnesium-chelatase 38 95.7 0.0071 2.4E-07 61.5 4.5 28 191-218 43-70 (350)
85 3u61_B DNA polymerase accessor 95.7 0.025 8.4E-07 57.1 8.4 87 186-274 38-179 (324)
86 3ec2_A DNA replication protein 95.7 0.026 9E-07 51.7 7.9 63 447-515 38-110 (180)
87 2z4s_A Chromosomal replication 95.6 0.027 9.1E-07 59.9 8.7 88 438-531 119-227 (440)
88 1jr3_A DNA polymerase III subu 95.6 0.017 6E-07 59.1 7.1 73 448-524 38-138 (373)
89 1ojl_A Transcriptional regulat 95.6 0.01 3.5E-07 59.9 5.1 37 181-217 13-49 (304)
90 3cf0_A Transitional endoplasmi 95.6 0.051 1.8E-06 54.4 10.3 68 445-515 47-118 (301)
91 1njg_A DNA polymerase III subu 95.6 0.0053 1.8E-07 58.1 2.8 32 187-218 36-70 (250)
92 2r44_A Uncharacterized protein 95.5 0.0048 1.7E-07 62.6 2.5 30 189-218 42-71 (331)
93 1sxj_D Activator 1 41 kDa subu 95.5 0.037 1.3E-06 56.1 9.2 91 427-520 40-148 (353)
94 1lv7_A FTSH; alpha/beta domain 95.5 0.0072 2.5E-07 59.0 3.7 26 192-217 44-69 (257)
95 2qgz_A Helicase loader, putati 95.5 0.0087 3E-07 60.5 4.3 33 185-217 139-176 (308)
96 1kgd_A CASK, peripheral plasma 95.5 0.0057 1.9E-07 56.5 2.7 27 192-218 4-30 (180)
97 3co5_A Putative two-component 95.5 0.013 4.6E-07 51.8 5.0 90 430-530 10-101 (143)
98 2qby_A CDC6 homolog 1, cell di 95.4 0.026 9E-07 57.7 7.8 69 446-517 44-140 (386)
99 1lvg_A Guanylate kinase, GMP k 95.4 0.0062 2.1E-07 57.3 2.7 28 191-218 2-29 (198)
100 3pxi_A Negative regulator of g 95.4 0.015 5.1E-07 66.2 6.3 83 425-512 181-274 (758)
101 3hu3_A Transitional endoplasmi 95.4 0.029 1E-06 60.4 8.2 68 445-514 236-306 (489)
102 3pfi_A Holliday junction ATP-d 95.4 0.01 3.6E-07 60.2 4.4 25 194-218 56-80 (338)
103 3cf0_A Transitional endoplasmi 95.4 0.0064 2.2E-07 61.1 2.8 27 191-217 47-73 (301)
104 3syl_A Protein CBBX; photosynt 95.3 0.0058 2E-07 61.1 2.2 26 192-217 66-91 (309)
105 1iy2_A ATP-dependent metallopr 95.3 0.052 1.8E-06 53.5 9.0 69 444-514 71-141 (278)
106 1hqc_A RUVB; extended AAA-ATPa 95.2 0.012 4.2E-07 59.1 4.3 27 192-218 37-63 (324)
107 3ney_A 55 kDa erythrocyte memb 95.2 0.0081 2.8E-07 56.7 2.7 27 192-218 18-44 (197)
108 1ofh_A ATP-dependent HSL prote 95.2 0.0078 2.7E-07 60.0 2.7 26 192-217 49-74 (310)
109 3te6_A Regulatory protein SIR3 95.2 0.067 2.3E-06 54.2 9.6 78 440-517 37-144 (318)
110 2gza_A Type IV secretion syste 95.2 0.012 4.1E-07 60.9 4.1 36 184-219 166-201 (361)
111 2qor_A Guanylate kinase; phosp 95.1 0.0084 2.9E-07 56.4 2.6 31 189-219 8-38 (204)
112 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.009 3.1E-07 64.6 3.1 32 186-217 34-65 (500)
113 3b9p_A CG5977-PA, isoform A; A 95.1 0.0078 2.7E-07 59.9 2.3 26 192-217 53-78 (297)
114 1sxj_D Activator 1 41 kDa subu 95.1 0.01 3.5E-07 60.4 3.2 32 186-217 49-82 (353)
115 1d2n_A N-ethylmaleimide-sensit 95.1 0.0087 3E-07 58.9 2.6 26 192-217 63-88 (272)
116 2z4s_A Chromosomal replication 95.0 0.02 7E-07 60.8 5.4 52 165-217 100-154 (440)
117 3tau_A Guanylate kinase, GMP k 95.0 0.011 3.6E-07 56.0 2.8 29 191-219 6-34 (208)
118 3bos_A Putative DNA replicatio 95.0 0.014 4.7E-07 55.5 3.6 35 446-480 51-88 (242)
119 1sxj_C Activator 1 40 kDa subu 94.9 0.059 2E-06 54.8 8.6 86 430-518 31-123 (340)
120 2qby_B CDC6 homolog 3, cell di 94.9 0.016 5.4E-07 59.6 4.3 37 181-217 31-69 (384)
121 3vaa_A Shikimate kinase, SK; s 94.9 0.0092 3.2E-07 55.9 2.3 28 190-217 22-49 (199)
122 1tue_A Replication protein E1; 94.9 0.015 5.2E-07 55.1 3.7 39 180-218 42-83 (212)
123 1iqp_A RFCS; clamp loader, ext 94.9 0.011 3.7E-07 59.3 2.8 32 186-217 37-70 (327)
124 4b4t_K 26S protease regulatory 94.9 0.0082 2.8E-07 63.5 1.9 25 193-217 206-230 (428)
125 1sxj_C Activator 1 40 kDa subu 94.9 0.013 4.5E-07 59.7 3.5 34 185-218 36-71 (340)
126 3eie_A Vacuolar protein sortin 94.8 0.0096 3.3E-07 60.4 2.3 25 193-217 51-75 (322)
127 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.015 5.3E-07 59.3 3.8 36 183-218 161-196 (330)
128 2zan_A Vacuolar protein sortin 94.8 0.037 1.3E-06 58.8 6.8 71 445-516 165-238 (444)
129 1ixz_A ATP-dependent metallopr 94.8 0.019 6.4E-07 55.8 4.1 25 193-217 49-73 (254)
130 1a5t_A Delta prime, HOLB; zinc 94.8 0.061 2.1E-06 54.7 8.2 80 436-519 11-122 (334)
131 1sxj_A Activator 1 95 kDa subu 94.8 0.011 3.9E-07 64.1 2.8 25 193-217 77-101 (516)
132 1in4_A RUVB, holliday junction 94.7 0.011 3.9E-07 60.2 2.5 24 194-217 52-75 (334)
133 3hws_A ATP-dependent CLP prote 94.7 0.013 4.3E-07 60.5 2.8 26 192-217 50-75 (363)
134 2qp9_X Vacuolar protein sortin 94.7 0.012 4E-07 60.8 2.6 25 193-217 84-108 (355)
135 1iy2_A ATP-dependent metallopr 94.7 0.023 7.7E-07 56.2 4.5 25 193-217 73-97 (278)
136 2r44_A Uncharacterized protein 94.7 0.08 2.7E-06 53.5 8.8 53 426-482 29-81 (331)
137 3d8b_A Fidgetin-like protein 1 94.7 0.016 5.5E-07 59.7 3.5 27 191-217 115-141 (357)
138 3t15_A Ribulose bisphosphate c 94.7 0.01 3.5E-07 59.5 1.9 24 194-217 37-60 (293)
139 1z6g_A Guanylate kinase; struc 94.7 0.015 5E-07 55.6 2.9 30 188-217 18-47 (218)
140 1qhx_A CPT, protein (chloramph 94.6 0.014 4.7E-07 53.2 2.6 26 193-218 3-28 (178)
141 3a00_A Guanylate kinase, GMP k 94.6 0.014 4.8E-07 54.1 2.6 26 193-218 1-26 (186)
142 1in4_A RUVB, holliday junction 94.6 0.23 7.9E-06 50.4 12.0 73 446-525 50-122 (334)
143 2kjq_A DNAA-related protein; s 94.6 0.015 5.1E-07 52.1 2.6 26 192-217 35-60 (149)
144 4b4t_I 26S protease regulatory 94.5 0.013 4.3E-07 61.8 2.2 26 192-217 215-240 (437)
145 2v1u_A Cell division control p 94.4 0.014 4.9E-07 59.7 2.4 27 191-217 42-68 (387)
146 1w5s_A Origin recognition comp 94.4 0.1 3.6E-06 53.9 9.0 69 447-518 50-151 (412)
147 1kag_A SKI, shikimate kinase I 94.4 0.02 6.8E-07 51.9 3.0 26 192-217 3-28 (173)
148 1um8_A ATP-dependent CLP prote 94.4 0.017 5.9E-07 59.7 2.9 26 192-217 71-96 (376)
149 2c9o_A RUVB-like 1; hexameric 94.3 0.022 7.7E-07 60.7 3.7 25 194-218 64-88 (456)
150 2gno_A DNA polymerase III, gam 94.3 0.14 5E-06 51.4 9.5 78 438-519 8-96 (305)
151 2j41_A Guanylate kinase; GMP, 94.3 0.02 6.7E-07 53.5 2.8 27 191-217 4-30 (207)
152 1u0j_A DNA replication protein 94.3 0.036 1.2E-06 54.7 4.8 40 178-217 85-128 (267)
153 1zp6_A Hypothetical protein AT 94.2 0.013 4.3E-07 54.2 1.3 26 191-216 7-32 (191)
154 3trf_A Shikimate kinase, SK; a 94.2 0.017 5.8E-07 53.1 2.2 25 193-217 5-29 (185)
155 1s96_A Guanylate kinase, GMP k 94.2 0.02 7E-07 54.8 2.7 30 189-218 12-41 (219)
156 3tr0_A Guanylate kinase, GMP k 94.1 0.02 6.9E-07 53.4 2.6 28 191-218 5-32 (205)
157 3k1j_A LON protease, ATP-depen 94.1 0.031 1.1E-06 61.9 4.4 39 182-220 49-87 (604)
158 4fcw_A Chaperone protein CLPB; 94.1 0.016 5.5E-07 57.9 1.8 25 194-218 48-72 (311)
159 2c95_A Adenylate kinase 1; tra 94.1 0.026 9E-07 52.0 3.2 29 189-217 5-33 (196)
160 1ojl_A Transcriptional regulat 94.1 0.17 5.9E-06 50.7 9.5 97 431-532 9-124 (304)
161 2qby_B CDC6 homolog 3, cell di 94.0 0.18 6.2E-06 51.6 9.8 36 447-482 45-91 (384)
162 3hu3_A Transitional endoplasmi 94.0 0.031 1E-06 60.3 4.0 27 191-217 236-262 (489)
163 3pxg_A Negative regulator of g 94.0 0.023 7.7E-07 60.9 3.0 27 191-217 199-225 (468)
164 3lw7_A Adenylate kinase relate 94.0 0.021 7.1E-07 51.3 2.2 22 195-217 3-24 (179)
165 3iij_A Coilin-interacting nucl 94.0 0.023 7.9E-07 52.0 2.6 26 192-217 10-35 (180)
166 2x8a_A Nuclear valosin-contain 94.0 0.022 7.5E-07 56.5 2.5 25 193-217 44-68 (274)
167 2kjq_A DNAA-related protein; s 93.9 0.075 2.6E-06 47.5 5.9 72 446-531 35-114 (149)
168 3vfd_A Spastin; ATPase, microt 93.9 0.021 7.3E-07 59.4 2.5 26 192-217 147-172 (389)
169 3kb2_A SPBC2 prophage-derived 93.9 0.022 7.6E-07 51.3 2.3 23 195-217 3-25 (173)
170 2r62_A Cell division protease 93.9 0.021 7.3E-07 55.8 2.3 67 447-516 44-114 (268)
171 1fnn_A CDC6P, cell division co 93.9 0.044 1.5E-06 56.2 4.7 25 195-219 46-70 (389)
172 3jvv_A Twitching mobility prot 93.7 0.028 9.7E-07 58.0 2.9 33 186-218 116-148 (356)
173 1sxj_B Activator 1 37 kDa subu 93.7 0.035 1.2E-06 55.4 3.6 32 186-217 33-66 (323)
174 2eyu_A Twitching motility prot 93.7 0.021 7.3E-07 56.2 1.9 29 190-218 22-50 (261)
175 2ce7_A Cell division protein F 93.7 0.037 1.3E-06 59.3 3.9 25 193-217 49-73 (476)
176 2qby_A CDC6 homolog 1, cell di 93.7 0.026 8.8E-07 57.7 2.5 25 193-217 45-69 (386)
177 2qen_A Walker-type ATPase; unk 93.6 0.22 7.6E-06 49.9 9.4 40 438-480 23-62 (350)
178 1ly1_A Polynucleotide kinase; 93.6 0.028 9.7E-07 51.0 2.4 21 195-215 4-24 (181)
179 1gvn_B Zeta; postsegregational 93.6 0.026 8.9E-07 56.4 2.3 26 193-218 33-58 (287)
180 2ze6_A Isopentenyl transferase 93.5 0.14 4.7E-06 50.0 7.4 57 450-507 4-93 (253)
181 1kht_A Adenylate kinase; phosp 93.5 0.027 9.3E-07 51.6 2.2 26 193-218 3-28 (192)
182 1p9r_A General secretion pathw 93.5 0.037 1.3E-06 58.4 3.4 35 185-219 158-193 (418)
183 1ye8_A Protein THEP1, hypothet 93.4 0.031 1E-06 51.7 2.3 23 195-217 2-24 (178)
184 2ewv_A Twitching motility prot 93.4 0.028 9.6E-07 58.3 2.3 30 189-218 132-161 (372)
185 1jr3_A DNA polymerase III subu 93.4 0.039 1.3E-06 56.5 3.3 24 195-218 40-63 (373)
186 1znw_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 52.3 2.7 30 189-218 16-45 (207)
187 2rhm_A Putative kinase; P-loop 93.4 0.022 7.7E-07 52.4 1.3 26 192-217 4-29 (193)
188 4gp7_A Metallophosphoesterase; 93.3 0.02 6.8E-07 52.4 0.8 23 192-214 8-30 (171)
189 3crm_A TRNA delta(2)-isopenten 93.2 0.16 5.5E-06 51.5 7.5 72 449-521 7-110 (323)
190 2qen_A Walker-type ATPase; unk 93.2 0.04 1.4E-06 55.5 3.1 31 187-217 25-55 (350)
191 3uie_A Adenylyl-sulfate kinase 93.1 0.034 1.2E-06 52.0 2.2 30 188-217 20-49 (200)
192 3cm0_A Adenylate kinase; ATP-b 93.1 0.025 8.6E-07 51.9 1.2 26 192-217 3-28 (186)
193 3llm_A ATP-dependent RNA helic 93.1 0.035 1.2E-06 53.3 2.3 25 190-214 73-97 (235)
194 1g41_A Heat shock protein HSLU 93.1 0.11 3.7E-06 55.1 6.1 36 446-481 49-84 (444)
195 4eun_A Thermoresistant glucoki 93.0 0.036 1.2E-06 51.8 2.3 26 192-217 28-53 (200)
196 2fna_A Conserved hypothetical 93.0 0.43 1.5E-05 47.8 10.5 43 436-481 22-64 (357)
197 4b3f_X DNA-binding protein smu 93.0 0.042 1.4E-06 61.3 3.0 29 189-217 201-229 (646)
198 3m6a_A ATP-dependent protease 93.0 0.12 4E-06 56.4 6.5 36 446-481 107-142 (543)
199 1y63_A LMAJ004144AAA protein; 93.0 0.04 1.4E-06 50.8 2.4 25 192-216 9-33 (184)
200 1ypw_A Transitional endoplasmi 93.0 0.11 3.7E-06 59.5 6.5 69 445-514 236-306 (806)
201 1nks_A Adenylate kinase; therm 93.0 0.036 1.2E-06 50.8 2.1 24 195-218 3-26 (194)
202 2ze6_A Isopentenyl transferase 92.9 0.038 1.3E-06 54.0 2.3 24 195-218 3-26 (253)
203 2qmh_A HPR kinase/phosphorylas 92.9 0.041 1.4E-06 51.9 2.3 27 192-218 33-59 (205)
204 3nbx_X ATPase RAVA; AAA+ ATPas 92.9 0.11 3.9E-06 55.9 6.2 28 446-473 40-67 (500)
205 3lnc_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 53.4 1.7 27 191-217 25-52 (231)
206 3t61_A Gluconokinase; PSI-biol 92.9 0.038 1.3E-06 51.6 2.1 25 193-217 18-42 (202)
207 1z2a_A RAS-related protein RAB 92.8 0.055 1.9E-06 47.9 3.1 24 194-217 6-29 (168)
208 1via_A Shikimate kinase; struc 92.8 0.047 1.6E-06 49.7 2.5 24 194-217 5-28 (175)
209 3vaa_A Shikimate kinase, SK; s 92.8 0.12 4E-06 48.2 5.3 32 447-478 25-56 (199)
210 1knq_A Gluconate kinase; ALFA/ 92.7 0.036 1.2E-06 50.3 1.7 25 193-217 8-32 (175)
211 2v54_A DTMP kinase, thymidylat 92.7 0.042 1.4E-06 51.0 2.2 26 192-217 3-28 (204)
212 3f9v_A Minichromosome maintena 92.7 0.026 8.8E-07 62.4 0.8 24 195-218 329-352 (595)
213 2dhr_A FTSH; AAA+ protein, hex 92.7 0.079 2.7E-06 57.2 4.5 26 193-218 64-89 (499)
214 2bdt_A BH3686; alpha-beta prot 92.7 0.047 1.6E-06 50.3 2.4 22 194-215 3-24 (189)
215 1g8p_A Magnesium-chelatase 38 92.6 0.14 4.9E-06 51.7 6.2 29 444-472 42-70 (350)
216 1g41_A Heat shock protein HSLU 92.6 0.054 1.8E-06 57.4 3.1 26 193-218 50-75 (444)
217 2dyk_A GTP-binding protein; GT 92.6 0.05 1.7E-06 47.9 2.4 23 195-217 3-25 (161)
218 2ehv_A Hypothetical protein PH 92.6 0.039 1.3E-06 52.9 1.8 26 190-215 27-52 (251)
219 1sxj_E Activator 1 40 kDa subu 92.6 0.046 1.6E-06 55.6 2.4 24 194-217 37-60 (354)
220 1ek0_A Protein (GTP-binding pr 92.5 0.065 2.2E-06 47.5 3.1 24 194-217 4-27 (170)
221 3a8t_A Adenylate isopentenyltr 92.5 0.043 1.5E-06 56.0 2.1 26 193-218 40-65 (339)
222 2atv_A RERG, RAS-like estrogen 92.5 0.057 1.9E-06 49.8 2.7 26 191-216 26-51 (196)
223 3upu_A ATP-dependent DNA helic 92.5 0.069 2.4E-06 56.9 3.7 26 193-218 45-70 (459)
224 1zak_A Adenylate kinase; ATP:A 92.4 0.055 1.9E-06 51.3 2.6 27 192-218 4-30 (222)
225 1c1y_A RAS-related protein RAP 92.4 0.069 2.4E-06 47.2 3.1 24 194-217 4-27 (167)
226 2v9p_A Replication protein E1; 92.4 0.052 1.8E-06 54.8 2.5 31 187-217 120-150 (305)
227 1kao_A RAP2A; GTP-binding prot 92.4 0.069 2.4E-06 47.1 3.1 24 194-217 4-27 (167)
228 2erx_A GTP-binding protein DI- 92.4 0.049 1.7E-06 48.4 2.1 24 193-216 3-26 (172)
229 2bwj_A Adenylate kinase 5; pho 92.4 0.05 1.7E-06 50.3 2.2 26 192-217 11-36 (199)
230 1ky3_A GTP-binding protein YPT 92.3 0.07 2.4E-06 47.9 3.1 25 193-217 8-32 (182)
231 1oix_A RAS-related protein RAB 92.3 0.07 2.4E-06 49.2 3.1 26 194-219 30-55 (191)
232 1zd8_A GTP:AMP phosphotransfer 92.3 0.055 1.9E-06 51.5 2.4 26 192-217 6-31 (227)
233 3dl0_A Adenylate kinase; phosp 92.2 0.056 1.9E-06 50.9 2.4 23 195-217 2-24 (216)
234 1aky_A Adenylate kinase; ATP:A 92.2 0.056 1.9E-06 51.2 2.4 26 192-217 3-28 (220)
235 1z08_A RAS-related protein RAB 92.2 0.075 2.6E-06 47.2 3.1 24 194-217 7-30 (170)
236 2ce2_X GTPase HRAS; signaling 92.2 0.074 2.5E-06 46.7 3.1 24 194-217 4-27 (166)
237 1z0j_A RAB-22, RAS-related pro 92.2 0.076 2.6E-06 47.1 3.1 24 194-217 7-30 (170)
238 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.071 2.4E-06 47.8 2.9 24 194-217 8-31 (177)
239 1htw_A HI0065; nucleotide-bind 92.2 0.061 2.1E-06 48.7 2.4 29 190-218 30-58 (158)
240 1w5s_A Origin recognition comp 92.1 0.09 3.1E-06 54.4 4.1 25 193-217 50-76 (412)
241 1tev_A UMP-CMP kinase; ploop, 92.1 0.059 2E-06 49.4 2.3 25 193-217 3-27 (196)
242 1cke_A CK, MSSA, protein (cyti 92.1 0.055 1.9E-06 51.2 2.2 25 193-217 5-29 (227)
243 3fb4_A Adenylate kinase; psych 92.1 0.056 1.9E-06 50.9 2.2 23 195-217 2-24 (216)
244 1sxj_E Activator 1 40 kDa subu 92.1 0.18 6.2E-06 51.1 6.2 22 448-469 37-58 (354)
245 1nn5_A Similar to deoxythymidy 92.0 0.057 1.9E-06 50.5 2.2 27 191-217 7-33 (215)
246 1g16_A RAS-related protein SEC 92.0 0.075 2.6E-06 47.2 2.9 24 194-217 4-27 (170)
247 3m6a_A ATP-dependent protease 92.0 0.057 2E-06 58.9 2.5 63 246-316 240-313 (543)
248 2plr_A DTMP kinase, probable t 92.0 0.054 1.8E-06 50.5 1.9 26 193-218 4-29 (213)
249 1nrj_B SR-beta, signal recogni 91.9 0.068 2.3E-06 50.1 2.5 26 192-217 11-36 (218)
250 2w0m_A SSO2452; RECA, SSPF, un 91.8 0.053 1.8E-06 51.2 1.7 27 191-217 21-47 (235)
251 3tif_A Uncharacterized ABC tra 91.8 0.058 2E-06 52.1 2.0 26 192-217 30-55 (235)
252 2iyv_A Shikimate kinase, SK; t 91.8 0.077 2.6E-06 48.5 2.7 24 194-217 3-26 (184)
253 4e22_A Cytidylate kinase; P-lo 91.8 0.058 2E-06 52.6 2.0 31 187-217 21-51 (252)
254 1u8z_A RAS-related protein RAL 91.8 0.09 3.1E-06 46.4 3.1 24 194-217 5-28 (168)
255 2vli_A Antibiotic resistance p 91.8 0.068 2.3E-06 48.7 2.3 25 193-217 5-29 (183)
256 1zuh_A Shikimate kinase; alpha 91.8 0.062 2.1E-06 48.4 2.0 26 192-217 6-31 (168)
257 3exa_A TRNA delta(2)-isopenten 91.8 0.063 2.2E-06 54.2 2.3 26 193-218 3-28 (322)
258 2p5t_B PEZT; postsegregational 91.8 0.051 1.8E-06 52.9 1.5 26 193-218 32-57 (253)
259 2wwf_A Thymidilate kinase, put 91.8 0.064 2.2E-06 50.1 2.2 26 192-217 9-34 (212)
260 1e6c_A Shikimate kinase; phosp 91.7 0.072 2.5E-06 48.0 2.4 24 194-217 3-26 (173)
261 3c8u_A Fructokinase; YP_612366 91.7 0.066 2.3E-06 50.3 2.2 26 192-217 21-46 (208)
262 2lkc_A Translation initiation 91.7 0.07 2.4E-06 47.9 2.3 26 191-216 6-31 (178)
263 2bbw_A Adenylate kinase 4, AK4 91.7 0.067 2.3E-06 51.7 2.3 26 192-217 26-51 (246)
264 3sop_A Neuronal-specific septi 91.7 0.06 2E-06 53.3 1.9 25 195-219 4-28 (270)
265 2y8e_A RAB-protein 6, GH09086P 91.7 0.092 3.1E-06 47.0 3.1 23 194-216 15-37 (179)
266 2jaq_A Deoxyguanosine kinase; 91.7 0.069 2.3E-06 49.4 2.3 24 195-218 2-25 (205)
267 1ukz_A Uridylate kinase; trans 91.7 0.072 2.5E-06 49.6 2.4 24 194-217 16-39 (203)
268 3bc1_A RAS-related protein RAB 91.7 0.092 3.2E-06 47.6 3.1 24 194-217 12-35 (195)
269 1r2q_A RAS-related protein RAB 91.7 0.093 3.2E-06 46.4 3.1 24 194-217 7-30 (170)
270 2ged_A SR-beta, signal recogni 91.6 0.074 2.5E-06 48.7 2.4 25 192-216 47-71 (193)
271 4a74_A DNA repair and recombin 91.6 0.05 1.7E-06 51.4 1.3 28 190-217 22-49 (231)
272 3pqc_A Probable GTP-binding pr 91.6 0.072 2.5E-06 48.6 2.3 25 193-217 23-47 (195)
273 2nzj_A GTP-binding protein REM 91.6 0.068 2.3E-06 47.8 2.1 23 194-216 5-27 (175)
274 2cdn_A Adenylate kinase; phosp 91.6 0.069 2.4E-06 49.7 2.2 24 194-217 21-44 (201)
275 1np6_A Molybdopterin-guanine d 91.6 0.069 2.4E-06 49.2 2.1 25 194-218 7-31 (174)
276 1qf9_A UMP/CMP kinase, protein 91.6 0.072 2.4E-06 48.7 2.3 24 194-217 7-30 (194)
277 1upt_A ARL1, ADP-ribosylation 91.6 0.059 2E-06 48.0 1.7 25 192-216 6-30 (171)
278 1svi_A GTP-binding protein YSX 91.6 0.073 2.5E-06 48.7 2.3 25 192-216 22-46 (195)
279 2f9l_A RAB11B, member RAS onco 91.5 0.09 3.1E-06 48.7 2.9 24 194-217 6-29 (199)
280 3b85_A Phosphate starvation-in 91.5 0.13 4.5E-06 48.7 4.0 33 183-216 13-45 (208)
281 2fn4_A P23, RAS-related protei 91.5 0.078 2.7E-06 47.6 2.4 24 193-216 9-32 (181)
282 2zej_A Dardarin, leucine-rich 91.5 0.065 2.2E-06 49.0 1.9 23 194-216 3-25 (184)
283 2i3b_A HCR-ntpase, human cance 91.5 0.089 3.1E-06 49.1 2.8 26 193-218 1-26 (189)
284 1m7b_A RND3/RHOE small GTP-bin 91.5 0.099 3.4E-06 47.6 3.1 24 194-217 8-31 (184)
285 3tlx_A Adenylate kinase 2; str 91.4 0.12 4E-06 50.1 3.7 43 175-217 8-53 (243)
286 2bme_A RAB4A, RAS-related prot 91.4 0.1 3.5E-06 47.3 3.1 24 194-217 11-34 (186)
287 3crm_A TRNA delta(2)-isopenten 91.4 0.081 2.8E-06 53.7 2.6 25 194-218 6-30 (323)
288 2pze_A Cystic fibrosis transme 91.3 0.069 2.3E-06 51.4 1.9 28 191-218 32-59 (229)
289 1r8s_A ADP-ribosylation factor 91.3 0.083 2.8E-06 46.7 2.4 22 195-216 2-23 (164)
290 2wji_A Ferrous iron transport 91.3 0.077 2.6E-06 47.5 2.1 23 194-216 4-26 (165)
291 3foz_A TRNA delta(2)-isopenten 91.3 0.084 2.9E-06 53.2 2.6 24 195-218 12-35 (316)
292 3kkq_A RAS-related protein M-R 91.3 0.11 3.6E-06 47.1 3.1 25 193-217 18-42 (183)
293 1a5t_A Delta prime, HOLB; zinc 91.3 0.16 5.5E-06 51.6 4.7 23 196-218 27-49 (334)
294 1sgw_A Putative ABC transporte 91.2 0.084 2.9E-06 50.3 2.4 27 191-217 33-59 (214)
295 1mh1_A RAC1; GTP-binding, GTPa 91.2 0.11 3.8E-06 46.8 3.1 24 194-217 6-29 (186)
296 3foz_A TRNA delta(2)-isopenten 91.2 0.34 1.2E-05 48.8 6.9 66 450-516 13-110 (316)
297 3nwj_A ATSK2; P loop, shikimat 91.2 0.087 3E-06 51.5 2.5 25 193-217 48-72 (250)
298 3clv_A RAB5 protein, putative; 91.2 0.11 3.8E-06 47.4 3.1 24 194-217 8-31 (208)
299 3q85_A GTP-binding protein REM 91.2 0.081 2.8E-06 47.0 2.1 22 195-216 4-25 (169)
300 2hxs_A RAB-26, RAS-related pro 91.2 0.093 3.2E-06 47.1 2.5 24 194-217 7-30 (178)
301 2yvu_A Probable adenylyl-sulfa 91.2 0.07 2.4E-06 49.0 1.7 26 192-217 12-37 (186)
302 1moz_A ARL1, ADP-ribosylation 91.1 0.053 1.8E-06 49.1 0.9 24 192-215 17-40 (183)
303 1z0f_A RAB14, member RAS oncog 91.1 0.11 3.9E-06 46.3 3.1 24 194-217 16-39 (179)
304 2cxx_A Probable GTP-binding pr 91.1 0.08 2.8E-06 48.1 2.1 22 195-216 3-24 (190)
305 2cvh_A DNA repair and recombin 91.1 0.076 2.6E-06 49.8 1.9 25 191-215 18-42 (220)
306 3ihw_A Centg3; RAS, centaurin, 91.1 0.11 3.7E-06 47.7 2.9 25 193-217 20-44 (184)
307 4dsu_A GTPase KRAS, isoform 2B 91.0 0.12 3.9E-06 46.9 3.1 24 194-217 5-28 (189)
308 3bwd_D RAC-like GTP-binding pr 91.0 0.11 3.8E-06 46.7 3.0 26 192-217 7-32 (182)
309 2pcj_A ABC transporter, lipopr 91.0 0.077 2.6E-06 50.9 1.9 26 191-216 28-53 (224)
310 2fh5_B SR-beta, signal recogni 91.0 0.11 3.8E-06 48.4 3.0 26 192-217 6-31 (214)
311 2efe_B Small GTP-binding prote 91.0 0.094 3.2E-06 47.2 2.4 24 194-217 13-36 (181)
312 1ksh_A ARF-like protein 2; sma 91.0 0.071 2.4E-06 48.5 1.6 27 191-217 16-42 (186)
313 2gj8_A MNME, tRNA modification 91.0 0.076 2.6E-06 48.1 1.8 25 192-216 3-27 (172)
314 3q72_A GTP-binding protein RAD 91.0 0.071 2.4E-06 47.3 1.5 23 194-216 3-25 (166)
315 1xjc_A MOBB protein homolog; s 91.0 0.087 3E-06 48.3 2.1 24 195-218 6-29 (169)
316 2ff7_A Alpha-hemolysin translo 90.9 0.081 2.8E-06 51.5 2.0 27 191-217 33-59 (247)
317 1zj6_A ADP-ribosylation factor 90.9 0.12 4.2E-06 47.0 3.1 26 191-216 14-39 (187)
318 2w58_A DNAI, primosome compone 90.8 0.35 1.2E-05 44.7 6.3 32 448-479 55-89 (202)
319 2oil_A CATX-8, RAS-related pro 90.8 0.12 4.3E-06 47.2 3.1 24 194-217 26-49 (193)
320 2wjg_A FEOB, ferrous iron tran 90.8 0.096 3.3E-06 47.6 2.3 23 194-216 8-30 (188)
321 2g6b_A RAS-related protein RAB 90.8 0.1 3.5E-06 46.9 2.4 24 194-217 11-34 (180)
322 3be4_A Adenylate kinase; malar 90.8 0.096 3.3E-06 49.6 2.3 25 193-217 5-29 (217)
323 2hf9_A Probable hydrogenase ni 90.8 0.12 4.1E-06 48.7 3.0 25 194-218 39-63 (226)
324 3tkl_A RAS-related protein RAB 90.8 0.13 4.4E-06 47.0 3.1 24 194-217 17-40 (196)
325 2cbz_A Multidrug resistance-as 90.8 0.075 2.6E-06 51.4 1.6 27 191-217 29-55 (237)
326 2z0h_A DTMP kinase, thymidylat 90.8 0.093 3.2E-06 48.3 2.2 22 196-217 3-24 (197)
327 3con_A GTPase NRAS; structural 90.7 0.13 4.4E-06 46.9 3.1 24 194-217 22-45 (190)
328 1n0w_A DNA repair protein RAD5 90.7 0.081 2.8E-06 50.4 1.8 27 190-216 21-47 (243)
329 3asz_A Uridine kinase; cytidin 90.7 0.088 3E-06 49.3 2.0 26 192-217 5-30 (211)
330 2a9k_A RAS-related protein RAL 90.7 0.13 4.4E-06 46.4 3.1 25 193-217 18-42 (187)
331 3c5c_A RAS-like protein 12; GD 90.7 0.13 4.5E-06 47.1 3.1 25 193-217 21-45 (187)
332 2dr3_A UPF0273 protein PH0284; 90.7 0.079 2.7E-06 50.6 1.6 28 190-217 20-47 (247)
333 1g6h_A High-affinity branched- 90.7 0.089 3E-06 51.5 2.0 27 191-217 31-57 (257)
334 1mv5_A LMRA, multidrug resista 90.7 0.08 2.7E-06 51.4 1.7 27 191-217 26-52 (243)
335 2gf9_A RAS-related protein RAB 90.6 0.13 4.6E-06 46.9 3.1 24 194-217 23-46 (189)
336 1z06_A RAS-related protein RAB 90.6 0.14 4.6E-06 46.8 3.1 25 193-217 20-44 (189)
337 1zd9_A ADP-ribosylation factor 90.6 0.14 4.6E-06 46.9 3.1 26 192-217 21-46 (188)
338 2pbr_A DTMP kinase, thymidylat 90.6 0.098 3.3E-06 47.9 2.1 23 195-217 2-24 (195)
339 2bov_A RAla, RAS-related prote 90.6 0.13 4.6E-06 47.3 3.1 24 194-217 15-38 (206)
340 1ko7_A HPR kinase/phosphatase; 90.6 0.16 5.5E-06 51.2 3.9 40 177-216 112-167 (314)
341 3dz8_A RAS-related protein RAB 90.6 0.14 4.7E-06 46.9 3.2 25 193-217 23-47 (191)
342 2fg5_A RAB-22B, RAS-related pr 90.5 0.13 4.6E-06 47.1 3.1 25 193-217 23-47 (192)
343 1e4v_A Adenylate kinase; trans 90.5 0.097 3.3E-06 49.3 2.1 23 195-217 2-24 (214)
344 2qt1_A Nicotinamide riboside k 90.5 0.082 2.8E-06 49.5 1.6 26 192-217 20-45 (207)
345 3tw8_B RAS-related protein RAB 90.5 0.084 2.9E-06 47.4 1.6 23 194-216 10-32 (181)
346 1m7g_A Adenylylsulfate kinase; 90.5 0.092 3.1E-06 49.4 1.9 28 190-217 22-49 (211)
347 3t5g_A GTP-binding protein RHE 90.5 0.14 4.7E-06 46.2 3.1 23 194-216 7-29 (181)
348 1gtv_A TMK, thymidylate kinase 90.5 0.053 1.8E-06 50.8 0.2 23 196-218 3-25 (214)
349 3a4m_A L-seryl-tRNA(SEC) kinas 90.5 0.087 3E-06 51.5 1.8 25 193-217 4-28 (260)
350 1ak2_A Adenylate kinase isoenz 90.5 0.1 3.5E-06 50.0 2.2 26 192-217 15-40 (233)
351 1x3s_A RAS-related protein RAB 90.5 0.14 4.8E-06 46.6 3.1 24 194-217 16-39 (195)
352 2pt5_A Shikimate kinase, SK; a 90.4 0.1 3.5E-06 46.7 2.1 22 196-217 3-24 (168)
353 2bcg_Y Protein YP2, GTP-bindin 90.4 0.14 4.7E-06 47.5 3.1 24 194-217 9-32 (206)
354 1gwn_A RHO-related GTP-binding 90.4 0.14 4.8E-06 47.9 3.1 26 192-217 27-52 (205)
355 2ixe_A Antigen peptide transpo 90.4 0.099 3.4E-06 51.7 2.1 27 191-217 43-69 (271)
356 1zbd_A Rabphilin-3A; G protein 90.4 0.14 4.7E-06 47.3 3.0 24 194-217 9-32 (203)
357 1b0u_A Histidine permease; ABC 90.3 0.1 3.4E-06 51.4 2.1 27 191-217 30-56 (262)
358 1ji0_A ABC transporter; ATP bi 90.3 0.097 3.3E-06 50.7 1.9 26 192-217 31-56 (240)
359 1vg8_A RAS-related protein RAB 90.3 0.15 5E-06 47.1 3.1 25 193-217 8-32 (207)
360 2pez_A Bifunctional 3'-phospho 90.3 0.095 3.2E-06 47.8 1.8 27 191-217 3-29 (179)
361 2gf0_A GTP-binding protein DI- 90.3 0.14 4.8E-06 46.8 3.0 25 193-217 8-32 (199)
362 3gfo_A Cobalt import ATP-bindi 90.3 0.097 3.3E-06 51.9 2.0 27 191-217 32-58 (275)
363 4dkx_A RAS-related protein RAB 90.3 0.13 4.5E-06 48.9 2.8 24 194-217 14-37 (216)
364 3reg_A RHO-like small GTPase; 90.3 0.15 5.1E-06 46.7 3.1 25 193-217 23-47 (194)
365 1pui_A ENGB, probable GTP-bind 90.3 0.052 1.8E-06 50.6 -0.1 25 192-216 25-49 (210)
366 3tqf_A HPR(Ser) kinase; transf 90.3 0.1 3.6E-06 48.0 1.9 25 192-216 15-39 (181)
367 1m2o_B GTP-binding protein SAR 90.2 0.11 3.9E-06 47.7 2.3 25 192-216 22-46 (190)
368 3nh6_A ATP-binding cassette SU 90.2 0.071 2.4E-06 53.8 0.9 27 191-217 78-104 (306)
369 4g1u_C Hemin import ATP-bindin 90.2 0.1 3.5E-06 51.5 1.9 27 191-217 35-61 (266)
370 4ag6_A VIRB4 ATPase, type IV s 90.2 0.12 4.2E-06 53.6 2.7 26 192-217 34-59 (392)
371 2a5j_A RAS-related protein RAB 90.1 0.13 4.3E-06 47.2 2.4 24 194-217 22-45 (191)
372 2xb4_A Adenylate kinase; ATP-b 90.1 0.11 3.8E-06 49.4 2.1 23 195-217 2-24 (223)
373 2nq2_C Hypothetical ABC transp 90.1 0.1 3.6E-06 51.0 1.9 27 191-217 29-55 (253)
374 3sr0_A Adenylate kinase; phosp 90.1 0.12 4.1E-06 48.9 2.3 22 196-217 3-24 (206)
375 2p5s_A RAS and EF-hand domain 90.1 0.13 4.3E-06 47.6 2.4 25 193-217 28-52 (199)
376 3d3q_A TRNA delta(2)-isopenten 90.0 0.13 4.3E-06 52.7 2.6 25 194-218 8-32 (340)
377 3lxx_A GTPase IMAP family memb 90.0 0.12 4.1E-06 49.5 2.3 25 193-217 29-53 (239)
378 2iwr_A Centaurin gamma 1; ANK 90.0 0.099 3.4E-06 47.0 1.6 23 194-216 8-30 (178)
379 2ghi_A Transport protein; mult 90.0 0.11 3.7E-06 51.1 1.9 26 191-216 44-69 (260)
380 2ew1_A RAS-related protein RAB 90.0 0.16 5.4E-06 47.4 3.1 24 194-217 27-50 (201)
381 2h17_A ADP-ribosylation factor 89.9 0.12 4E-06 47.0 2.0 24 193-216 21-44 (181)
382 1jjv_A Dephospho-COA kinase; P 89.9 0.12 4.1E-06 48.2 2.1 21 195-215 4-24 (206)
383 2olj_A Amino acid ABC transpor 89.9 0.11 3.8E-06 51.1 2.0 27 191-217 48-74 (263)
384 3umf_A Adenylate kinase; rossm 89.9 0.12 4.3E-06 49.3 2.3 25 193-217 29-53 (217)
385 1svm_A Large T antigen; AAA+ f 89.9 0.12 4.2E-06 53.6 2.4 28 190-217 166-193 (377)
386 3oes_A GTPase rhebl1; small GT 89.8 0.16 5.6E-06 46.9 3.1 26 192-217 23-48 (201)
387 3kta_A Chromosome segregation 89.8 0.13 4.4E-06 46.9 2.2 22 195-216 28-49 (182)
388 2qi9_C Vitamin B12 import ATP- 89.8 0.1 3.5E-06 50.9 1.6 27 190-216 23-49 (249)
389 1uf9_A TT1252 protein; P-loop, 89.8 0.12 4E-06 47.9 1.9 25 192-216 7-31 (203)
390 2f1r_A Molybdopterin-guanine d 89.8 0.076 2.6E-06 48.8 0.6 25 194-218 3-27 (171)
391 1rj9_A FTSY, signal recognitio 89.8 0.11 3.9E-06 52.2 1.9 25 193-217 102-126 (304)
392 2gxq_A Heat resistant RNA depe 89.7 0.14 4.8E-06 47.4 2.5 27 191-217 36-63 (207)
393 2ihy_A ABC transporter, ATP-bi 89.7 0.12 4E-06 51.4 2.0 27 191-217 45-71 (279)
394 1rz3_A Hypothetical protein rb 89.7 0.18 6.3E-06 47.0 3.3 36 182-217 7-46 (201)
395 3trf_A Shikimate kinase, SK; a 89.7 0.25 8.7E-06 44.9 4.2 32 447-478 5-36 (185)
396 2qag_B Septin-6, protein NEDD5 89.7 0.13 4.4E-06 54.2 2.4 32 185-216 32-65 (427)
397 1qde_A EIF4A, translation init 89.7 0.21 7E-06 47.1 3.7 27 191-217 49-76 (224)
398 1vpl_A ABC transporter, ATP-bi 89.7 0.12 4E-06 50.7 2.0 26 192-217 40-65 (256)
399 2fu5_C RAS-related protein RAB 89.7 0.1 3.5E-06 47.2 1.5 23 194-216 9-31 (183)
400 3llu_A RAS-related GTP-binding 89.7 0.13 4.4E-06 47.5 2.1 27 192-218 19-45 (196)
401 1h65_A Chloroplast outer envel 89.6 0.23 7.7E-06 48.7 4.0 36 181-216 24-62 (270)
402 2if2_A Dephospho-COA kinase; a 89.6 0.14 4.8E-06 47.6 2.4 20 196-215 4-23 (204)
403 2atx_A Small GTP binding prote 89.6 0.18 6.1E-06 46.1 3.1 24 194-217 19-42 (194)
404 2yz2_A Putative ABC transporte 89.5 0.13 4.3E-06 50.7 2.1 26 191-216 31-56 (266)
405 1w36_D RECD, exodeoxyribonucle 89.5 0.13 4.6E-06 56.8 2.5 31 186-217 158-188 (608)
406 3e1s_A Exodeoxyribonuclease V, 89.5 0.14 4.7E-06 56.3 2.6 34 183-217 195-228 (574)
407 2fna_A Conserved hypothetical 89.5 0.14 5E-06 51.4 2.5 24 194-217 31-54 (357)
408 2gco_A H9, RHO-related GTP-bin 89.5 0.19 6.4E-06 46.5 3.1 25 193-217 25-49 (201)
409 1vec_A ATP-dependent RNA helic 89.5 0.16 5.6E-06 47.0 2.7 21 191-211 38-58 (206)
410 2o52_A RAS-related protein RAB 89.4 0.13 4.6E-06 47.6 2.0 23 194-216 26-48 (200)
411 3a8t_A Adenylate isopentenyltr 89.4 0.47 1.6E-05 48.3 6.2 65 449-514 42-139 (339)
412 1tq4_A IIGP1, interferon-induc 89.4 0.23 8E-06 52.1 4.1 37 183-219 59-95 (413)
413 3io5_A Recombination and repai 89.4 1.4 4.7E-05 44.6 9.5 97 437-544 12-131 (333)
414 3b9q_A Chloroplast SRP recepto 89.4 0.12 4E-06 52.0 1.7 26 192-217 99-124 (302)
415 1nlf_A Regulatory protein REPA 89.4 0.12 4.1E-06 50.9 1.7 28 190-217 27-54 (279)
416 2fz4_A DNA repair protein RAD2 89.3 0.2 6.9E-06 48.2 3.3 31 186-217 102-132 (237)
417 2cvh_A DNA repair and recombin 89.3 0.76 2.6E-05 42.7 7.4 52 438-489 8-62 (220)
418 2d2e_A SUFC protein; ABC-ATPas 89.3 0.13 4.3E-06 50.2 1.8 25 191-215 27-51 (250)
419 2j0v_A RAC-like GTP-binding pr 89.3 0.19 6.6E-06 46.7 3.1 24 194-217 10-33 (212)
420 2q3h_A RAS homolog gene family 89.3 0.14 4.8E-06 47.1 2.1 25 192-216 19-43 (201)
421 4gzl_A RAS-related C3 botulinu 89.3 0.19 6.4E-06 46.7 3.0 26 192-217 29-54 (204)
422 2fv8_A H6, RHO-related GTP-bin 89.3 0.17 6E-06 47.0 2.8 25 193-217 25-49 (207)
423 3exa_A TRNA delta(2)-isopenten 89.2 0.58 2E-05 47.2 6.6 66 450-516 6-103 (322)
424 2zu0_C Probable ATP-dependent 89.2 0.13 4.4E-06 50.7 1.9 25 191-215 44-68 (267)
425 3cph_A RAS-related protein SEC 89.2 0.2 6.7E-06 46.5 3.1 25 192-216 19-43 (213)
426 1fzq_A ADP-ribosylation factor 89.2 0.12 4.1E-06 47.0 1.5 24 193-216 16-39 (181)
427 2f7s_A C25KG, RAS-related prot 89.2 0.18 6.2E-06 47.1 2.8 24 194-217 26-49 (217)
428 1hv8_A Putative ATP-dependent 89.1 0.24 8.2E-06 49.9 3.9 32 184-215 35-66 (367)
429 2b6h_A ADP-ribosylation factor 89.1 0.11 3.8E-06 47.9 1.2 25 192-216 28-52 (192)
430 2cjw_A GTP-binding protein GEM 89.1 0.17 5.7E-06 46.7 2.4 23 194-216 7-29 (192)
431 2qu8_A Putative nucleolar GTP- 89.0 0.14 4.9E-06 48.5 2.0 24 193-216 29-52 (228)
432 2h57_A ADP-ribosylation factor 89.0 0.12 4.1E-06 47.2 1.4 25 193-217 21-45 (190)
433 2gk6_A Regulator of nonsense t 89.0 0.28 9.7E-06 54.3 4.6 25 193-217 195-219 (624)
434 4bas_A ADP-ribosylation factor 88.9 0.13 4.5E-06 47.0 1.6 24 193-216 17-40 (199)
435 1kag_A SKI, shikimate kinase I 88.9 0.34 1.2E-05 43.5 4.4 29 449-477 6-34 (173)
436 1cr0_A DNA primase/helicase; R 88.9 0.14 4.8E-06 50.8 1.9 28 190-217 32-59 (296)
437 1ltq_A Polynucleotide kinase; 88.9 0.17 5.7E-06 50.3 2.4 23 195-217 4-26 (301)
438 2wsm_A Hydrogenase expression/ 88.8 0.17 5.7E-06 47.5 2.3 27 192-218 29-55 (221)
439 2j1l_A RHO-related GTP-binding 88.8 0.16 5.4E-06 47.7 2.1 23 194-216 35-57 (214)
440 3cbq_A GTP-binding protein REM 88.8 0.15 5E-06 47.2 1.8 22 194-215 24-45 (195)
441 3eph_A TRNA isopentenyltransfe 88.8 0.16 5.3E-06 53.1 2.2 23 196-218 5-27 (409)
442 1e9r_A Conjugal transfer prote 88.8 0.14 4.7E-06 53.9 1.8 26 192-217 52-77 (437)
443 2onk_A Molybdate/tungstate ABC 88.8 0.2 6.8E-06 48.6 2.8 24 194-217 25-48 (240)
444 3r20_A Cytidylate kinase; stru 88.8 0.16 5.6E-06 49.0 2.2 29 189-217 5-33 (233)
445 2il1_A RAB12; G-protein, GDP, 88.7 0.14 4.7E-06 47.1 1.6 23 194-216 27-49 (192)
446 2x77_A ADP-ribosylation factor 88.7 0.1 3.6E-06 47.5 0.7 24 192-215 21-44 (189)
447 1knq_A Gluconate kinase; ALFA/ 88.7 0.34 1.2E-05 43.7 4.2 29 449-477 10-38 (175)
448 2hup_A RAS-related protein RAB 88.6 0.2 6.7E-06 46.5 2.6 24 194-217 30-53 (201)
449 2xau_A PRE-mRNA-splicing facto 88.6 0.23 7.7E-06 56.6 3.6 31 185-215 101-131 (773)
450 3iuy_A Probable ATP-dependent 88.6 0.19 6.4E-06 47.6 2.5 21 190-210 54-74 (228)
451 3t1o_A Gliding protein MGLA; G 88.6 0.2 6.8E-06 45.5 2.6 23 193-216 14-36 (198)
452 3lxw_A GTPase IMAP family memb 88.6 0.17 5.9E-06 49.0 2.3 24 193-216 21-44 (247)
453 1nij_A Hypothetical protein YJ 88.6 0.26 8.8E-06 49.8 3.6 22 196-217 7-28 (318)
454 2pl3_A Probable ATP-dependent 88.6 0.19 6.5E-06 47.9 2.5 21 190-210 59-79 (236)
455 3q3j_B RHO-related GTP-binding 88.5 0.24 8.1E-06 46.5 3.1 25 193-217 27-51 (214)
456 1f2t_A RAD50 ABC-ATPase; DNA d 88.5 0.18 6.2E-06 44.9 2.1 19 196-214 26-44 (149)
457 2ius_A DNA translocase FTSK; n 88.5 0.2 6.7E-06 54.1 2.7 26 192-217 166-191 (512)
458 3zvl_A Bifunctional polynucleo 88.4 0.17 5.9E-06 53.1 2.3 25 193-217 258-282 (416)
459 4eaq_A DTMP kinase, thymidylat 88.4 0.15 5E-06 49.0 1.6 27 192-218 25-51 (229)
460 2vhj_A Ntpase P4, P4; non- hyd 88.4 0.16 5.4E-06 51.5 1.8 24 193-216 123-146 (331)
461 2r2a_A Uncharacterized protein 88.2 0.21 7E-06 47.0 2.4 22 195-216 7-28 (199)
462 2ga8_A Hypothetical 39.9 kDa p 88.2 0.28 9.7E-06 50.3 3.6 37 181-217 10-48 (359)
463 3b6e_A Interferon-induced heli 88.2 0.22 7.5E-06 46.2 2.6 24 192-215 47-70 (216)
464 1odf_A YGR205W, hypothetical 3 88.2 1.5 5.1E-05 43.5 8.9 21 450-470 34-54 (290)
465 3e70_C DPA, signal recognition 88.1 0.2 6.8E-06 51.0 2.4 26 192-217 128-153 (328)
466 3fvq_A Fe(3+) IONS import ATP- 88.1 0.19 6.6E-06 51.7 2.3 27 191-217 28-54 (359)
467 2jeo_A Uridine-cytidine kinase 88.1 0.17 6E-06 48.7 1.9 28 190-217 22-49 (245)
468 2bbs_A Cystic fibrosis transme 88.1 0.13 4.6E-06 51.3 1.1 27 191-217 62-88 (290)
469 2orw_A Thymidine kinase; TMTK, 88.1 0.75 2.6E-05 42.4 6.2 80 450-531 6-103 (184)
470 2xtp_A GTPase IMAP family memb 88.0 0.19 6.6E-06 48.7 2.2 24 193-216 22-45 (260)
471 2npi_A Protein CLP1; CLP1-PCF1 88.0 0.25 8.5E-06 52.7 3.2 32 186-217 131-162 (460)
472 1f6b_A SAR1; gtpases, N-termin 88.0 0.18 6.1E-06 46.7 1.9 24 193-216 25-48 (198)
473 2zts_A Putative uncharacterize 88.0 0.18 6.1E-06 48.1 1.9 25 192-216 29-53 (251)
474 1vht_A Dephospho-COA kinase; s 87.9 0.17 5.8E-06 47.6 1.7 23 193-215 4-26 (218)
475 1lw7_A Transcriptional regulat 87.9 0.17 5.9E-06 52.0 1.8 30 189-218 164-195 (365)
476 3gj0_A GTP-binding nuclear pro 87.8 0.15 5E-06 48.0 1.1 24 193-216 15-38 (221)
477 1zuh_A Shikimate kinase; alpha 87.8 0.38 1.3E-05 43.1 3.9 31 448-478 8-38 (168)
478 2yc2_C IFT27, small RAB-relate 87.8 0.13 4.3E-06 47.5 0.6 24 193-216 20-43 (208)
479 3iij_A Coilin-interacting nucl 87.7 0.49 1.7E-05 42.9 4.6 31 448-478 12-42 (180)
480 1z47_A CYSA, putative ABC-tran 87.7 0.2 7E-06 51.5 2.2 27 191-217 39-65 (355)
481 2pjz_A Hypothetical protein ST 87.6 0.18 6.2E-06 49.6 1.7 27 190-217 28-54 (263)
482 1qhx_A CPT, protein (chloramph 87.6 0.53 1.8E-05 42.4 4.8 31 449-479 5-35 (178)
483 3kb2_A SPBC2 prophage-derived 87.6 0.4 1.4E-05 42.7 3.9 30 449-478 3-32 (173)
484 2va8_A SSO2462, SKI2-type heli 87.5 0.26 8.9E-06 55.4 3.2 30 185-214 38-67 (715)
485 3rlf_A Maltose/maltodextrin im 87.4 0.22 7.5E-06 51.7 2.3 28 191-218 27-54 (381)
486 2eyu_A Twitching motility prot 87.4 0.27 9.3E-06 48.2 2.9 26 445-470 23-48 (261)
487 2g3y_A GTP-binding protein GEM 87.4 0.23 7.9E-06 46.9 2.3 22 194-215 38-59 (211)
488 2qnr_A Septin-2, protein NEDD5 87.4 0.21 7E-06 50.1 2.0 24 193-216 18-41 (301)
489 3t5d_A Septin-7; GTP-binding p 87.4 0.17 5.8E-06 49.8 1.4 23 194-216 9-31 (274)
490 2obl_A ESCN; ATPase, hydrolase 87.4 0.23 7.8E-06 51.0 2.3 39 180-219 59-97 (347)
491 2og2_A Putative signal recogni 87.4 0.18 6.3E-06 51.9 1.6 26 192-217 156-181 (359)
492 2it1_A 362AA long hypothetical 87.4 0.23 7.7E-06 51.3 2.3 26 192-217 28-53 (362)
493 3cpj_B GTP-binding protein YPT 87.3 0.29 9.9E-06 46.1 2.9 24 194-217 14-37 (223)
494 1via_A Shikimate kinase; struc 87.3 0.45 1.6E-05 42.9 4.2 30 449-478 6-35 (175)
495 3jvv_A Twitching mobility prot 87.3 0.37 1.3E-05 49.6 3.9 38 442-479 118-159 (356)
496 3k53_A Ferrous iron transport 87.3 0.22 7.6E-06 48.8 2.2 23 194-216 4-26 (271)
497 2orw_A Thymidine kinase; TMTK, 87.3 0.24 8.2E-06 45.8 2.2 25 193-217 3-27 (184)
498 2px0_A Flagellar biosynthesis 87.3 0.22 7.6E-06 49.8 2.1 26 192-217 104-129 (296)
499 2yyz_A Sugar ABC transporter, 87.2 0.23 7.9E-06 51.1 2.3 26 192-217 28-53 (359)
500 1odf_A YGR205W, hypothetical 3 87.2 0.22 7.7E-06 49.6 2.1 37 181-217 12-55 (290)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=9.8e-101 Score=953.01 Aligned_cols=501 Identities=21% Similarity=0.349 Sum_probs=427.0
Q ss_pred HHHHHHhhH--HHHhhhhhhhee------ccchhhHHHHHHHHHHhccCcc------c-CCCCCH----HHHHHHHHHHH
Q psy12736 30 FRNALKETE--PRYYEDLLDYSA------VGHLFTEIVQLCQMLQASLDEA------N-LGSMSP----EELEAVFIQSV 90 (567)
Q Consensus 30 ~~~~l~~lf--~~~~~~~l~f~~------~~~~~~lv~s~~~ll~~ll~~~------~-~~~~~~----~~~e~~Fifsl 90 (567)
+.+.+..+| +.|++++++|.. ..++.++|.++|+++++++.+. . .....+ .+++++|+||+
T Consensus 1135 ~~~~l~~~~~~~~~v~~~l~~~~~~~~i~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fal 1214 (3245)
T 3vkg_A 1135 CAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSL 1214 (3245)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHTSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHhcCcccCccHHHHHHHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 456677787 678899999853 3578899999999999988431 0 111122 36899999999
Q ss_pred HHHhcCcCChhhHHHHHHHHHHHhCCCCCCCCcccccccCcCCCCCCCeeEEEEECCCCceeeCcccccceeecCC-CCC
Q psy12736 91 YASLGASLVAEAQTVFDAHVKNLTGFLNVVDSDDRLANYTQIPTAESSWYHYTLDRSKNAWVPWRHLVRSYVHDGD-KSF 169 (567)
Q Consensus 91 iWs~Gg~l~~~~R~~Fd~~lr~~~~~~~~~d~~~~~~~~~~~P~~~~~vfDy~~d~~~~~w~~W~~~v~~~~~~~~-~~~ 169 (567)
+|||||+++.++|.+||+|+|+.... ++|+++++||||++|.++++|.+|.+.+|++.+++. .++
T Consensus 1215 iWs~Gg~l~~~~R~~F~~~~~~~~~~--------------~~p~~~~~v~Dy~~~~~~~~w~~W~~~v~~~~~~~~~~~~ 1280 (3245)
T 3vkg_A 1215 MWGLGGSMGLVERENFSKFIQTIAIT--------------PVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHKVAS 1280 (3245)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHTTCSS--------------CCCCTTSCGGGEEECTTTCSEEETTCCC---CCCSTTTTC
T ss_pred HHHhcccCCHHHHHHHHHHHHHhcCC--------------CCCCCCCceEEEEEECCCCeeeehhhcCCccccCCccCCc
Confidence 99999999999999999999987642 255456899999999999999999999999988776 689
Q ss_pred ccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcceeee------------------c----
Q psy12736 170 GDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA------------------E---- 227 (567)
Q Consensus 170 ~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~------------------e---- 227 (567)
.+++|||+||+|+.|+++.++.+++||||+||||||||+++.++|.++++..+..+| |
T Consensus 1281 ~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~ 1360 (3245)
T 3vkg_A 1281 PDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRT 1360 (3245)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEEC
T ss_pred ccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEec
Confidence 999999999999999999999999999999999999999999999988654443333 1
Q ss_pred -------CCC-CCceEEEEe----ec-----------------------------------cchh---------------
Q psy12736 228 -------LPP-TPAKFHYIF----NL-----------------------------------RDLS--------------- 245 (567)
Q Consensus 228 -------gPp-~gkk~v~iF----Nl-----------------------------------~D~~--------------- 245 (567)
+|+ .||++| +| |+ .|+.
T Consensus 1361 ~~~G~~~~p~~~Gk~~V-lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~ 1439 (3245)
T 3vkg_A 1361 PSGETVLRPTQLGKWLV-VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQ 1439 (3245)
T ss_dssp TTSCEEEEESSTTCEEE-EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCC
T ss_pred cCCCcccCCCcCCceEE-EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCcc
Confidence 255 499999 77 51 1111
Q ss_pred ---hhhhccccccccccCCHHHHHHHHHHhhhhhh--------------cChHHHHHHHHHhCCCCCCccccccChhhHH
Q psy12736 246 ---RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTI--------------CDRLNTDELVIAELPPTPAKFHYIFNLRDLS 308 (567)
Q Consensus 246 ---R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~--------------~~~i~~y~~i~~~llptp~k~HY~FnlRDls 308 (567)
||+| ||+++++++|+++++.+||++++...+ ..++++|+.+++.|+|+ +|+||+||||||+
T Consensus 1440 l~~Rf~r-~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~-~k~HY~FnLRDLs 1517 (3245)
T 3vkg_A 1440 LTHRFLR-HAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELS 1517 (3245)
T ss_dssp CCHHHHT-TCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTT-TSTTCCCCHHHHH
T ss_pred CCHHHHh-hceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCccccHHHHH
Confidence 9999 999999999999999999999876321 12389999999999996 9999999999999
Q ss_pred HHHhhhhcc-cccccCCHHHHHHHHhhhhchhhccccCChhhHHHHHHHHHHHHHhhCCcchhhhccCCceecccccccc
Q psy12736 309 RIIQGLTAT-EKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQDVNVVMRDPLLFGDFRNALK 387 (567)
Q Consensus 309 rv~qGi~~~-~~~~~~~~~~l~rLw~hE~~RVF~DRLi~~eDr~~f~~~l~~~~~~~f~~~~~~~~~~~llf~d~~~~~~ 387 (567)
||+||++++ .+....+++.++|||+|||+|||+|||++++||+||.+++.++++++|+...+..+.+|++||||++
T Consensus 1518 rv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~--- 1594 (3245)
T 3vkg_A 1518 RWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLT--- 1594 (3245)
T ss_dssp HHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC---
T ss_pred HHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhcc---
Confidence 999999987 4445567899999999999999999999999999999999999999998543555678999999985
Q ss_pred CCCCcccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHH
Q psy12736 388 ETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLA 467 (567)
Q Consensus 388 ~~~~~~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rla 467 (567)
+.|+++ +.+++++.++++|++||++ ..+|+||+|+||++||+||+|||++|+|||||||+||||||||+|||
T Consensus 1595 ----~~Y~~v-~~~~l~~~l~~~L~~yn~~---~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLA 1666 (3245)
T 3vkg_A 1595 ----KDYQPV-NRSDLREYVKARLKVFYEE---ELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFV 1666 (3245)
T ss_dssp --------CC-CHHHHHHHHHHHHHTTC---------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHH
T ss_pred ----ccCccC-CHHHHHHHHHHHHHHHHhc---ccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHH
Confidence 258888 7899999999999999988 68899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccccCcchhHHHHHH
Q psy12736 468 SFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNEASFKEDLKSLYN 546 (567)
Q Consensus 468 a~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp~Lf~~eE~~~i~ 546 (567)
|||+|+++|||+++|+|+.++|+||||++|++||++|+++||||+|+||++|+|||+|| ||++|||||||++||+++|+
T Consensus 1667 a~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~ 1746 (3245)
T 3vkg_A 1667 AWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALM 1746 (3245)
T ss_dssp HHHTTCEEECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHH
T ss_pred HHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred Hhhccccceeeee
Q psy12736 547 LLGVKNQATVFLF 559 (567)
Q Consensus 547 ~~~~~~~~~~~~~ 559 (567)
+.+|++|+..++
T Consensus 1747 -~~~r~~a~~~g~ 1758 (3245)
T 3vkg_A 1747 -HACKETAQRNGL 1758 (3245)
T ss_dssp -HHHHHHHHHTTC
T ss_pred -HHHHHHHHhcCC
Confidence 999999887764
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.1e-95 Score=906.63 Aligned_cols=478 Identities=19% Similarity=0.276 Sum_probs=423.4
Q ss_pred cchhhHHHHHHHHHHhccCccc---CCCC---CHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHhCCCCCCCCccc
Q psy12736 52 GHLFTEIVQLCQMLQASLDEAN---LGSM---SPEELEAVFIQSVYASLGASLVAEAQTVFDAHVKNLTGFLNVVDSDDR 125 (567)
Q Consensus 52 ~~~~~lv~s~~~ll~~ll~~~~---~~~~---~~~~~e~~FifsliWs~Gg~l~~~~R~~Fd~~lr~~~~~~~~~d~~~~ 125 (567)
.++.++|.++++++++++.... .... ...+++.+|+||++||+||+++.++|.+||+|+|+.+..
T Consensus 1134 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~~--------- 1204 (2695)
T 4akg_A 1134 VRTFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGH--------- 1204 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCGGGTSSCHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHSCS---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---------
Confidence 5678999999999998876421 1111 125789999999999999999999999999999998751
Q ss_pred ccccCcCCCCCCCeeEEEEECCCCceeeCcccccceeecC-CCCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCC
Q psy12736 126 LANYTQIPTAESSWYHYTLDRSKNAWVPWRHLVRSYVHDG-DKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGT 204 (567)
Q Consensus 126 ~~~~~~~P~~~~~vfDy~~d~~~~~w~~W~~~v~~~~~~~-~~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGt 204 (567)
..+| .+++|||++|.++++|.+|.+.+|++.+++ +.++.+++|||+||+|+.|+++.+++.++||||+|||||
T Consensus 1205 ----~~~p--~~~~~dy~~~~~~~~w~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGt 1278 (2695)
T 4akg_A 1205 ----DSQE--LSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGS 1278 (2695)
T ss_dssp ----SSCC--CCSSCCCBCCSSSCCCBCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTS
T ss_pred ----cCCC--CCCeeEEEEECCCCceeechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 1366 369999999999999999999999998766 478999999999999999999999999999999999999
Q ss_pred CchhhHHHHHhccCCCcceeee------------------c----------CCC-CCceEEEEe----ec----------
Q psy12736 205 SKTATMMNFLRSLSPDKYLVIA------------------E----------LPP-TPAKFHYIF----NL---------- 241 (567)
Q Consensus 205 GKT~~i~~~l~~l~~~~~~~~~------------------e----------gPp-~gkk~v~iF----Nl---------- 241 (567)
|||+++++++.+..+.....++ + ||| .||++| +| |+
T Consensus 1279 GKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V-lFiDEinmp~~d~yg~q~ 1357 (2695)
T 4akg_A 1279 GKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV-LFCDEINLPKLDKYGSQN 1357 (2695)
T ss_dssp SHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE-EEEETTTCSCCCSSSCCH
T ss_pred CHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEE-EEecccccccccccCchh
Confidence 9999999999887544333332 1 453 789999 77 41
Q ss_pred -------------------------cchh------------------hhhhccccccccccCCHHHHHHHHHHhhhhhh-
Q psy12736 242 -------------------------RDLS------------------RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTI- 277 (567)
Q Consensus 242 -------------------------~D~~------------------R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~- 277 (567)
.|+. ||+| ||++++++.|+.+++.+||.+++...+
T Consensus 1358 ~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-rf~vi~i~~P~~~~l~~I~~~il~~~l~ 1436 (2695)
T 4akg_A 1358 VVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-HAAILYLGYPSGKSLSQIYEIYYKAIFK 1436 (2695)
T ss_dssp HHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-TEEEEECCCCTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-eeeEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 1111 9999 999999999999999999999987432
Q ss_pred -------------cChHHHHHHHHHhCCCCCCccccccChhhHHHHHhhhhccccc-ccCCHHHHHHHHhhhhchhhccc
Q psy12736 278 -------------CDRLNTDELVIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKI-IFNTKEMFVRAWRNEFTRTICDR 343 (567)
Q Consensus 278 -------------~~~i~~y~~i~~~llptp~k~HY~FnlRDlsrv~qGi~~~~~~-~~~~~~~l~rLw~hE~~RVF~DR 343 (567)
..++++|+++++.|+|+ +|+||+||||||+||+||++++.+. .+.++..++|||+|||+|||+||
T Consensus 1437 ~~~~v~~~~~~lv~ati~~y~~v~~~~~~~-~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DR 1515 (2695)
T 4akg_A 1437 LVPEFRSYTEPFARASVHLYNECKARYSTG-LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADR 1515 (2695)
T ss_dssp SSGGGGGGHHHHHHHHHHHHHHHHHHSCTT-TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHh
Confidence 22389999999999875 8999999999999999999998543 57889999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHhhCCcch-hhhccCCceeccccccccCCCCcccccccChHHHHHHHHHHHHHHhhhhcccC
Q psy12736 344 LNTDEDLSLMSGHIADSVKRNFPQDV-NVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKA 422 (567)
Q Consensus 344 Li~~eDr~~f~~~l~~~~~~~f~~~~-~~~~~~~llf~d~~~~~~~~~~~~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~ 422 (567)
|++++||+||.+++.++++++|+... +....+|++||||++. .|+++.+ +++++.++++|++||++ ..
T Consensus 1516 Lv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~-------~Y~~v~~-~~l~~~l~~~l~~yn~~---~~ 1584 (2695)
T 4akg_A 1516 LVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSL-------DFKEVNK-TDLVNFIEERFKTFCDE---EL 1584 (2695)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSS-------SCEECCH-HHHHHHHHHHHHHHHHH---SC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCC-------cceecCH-HHHHHHHHHHHHHHHhh---cC
Confidence 99999999999999999999997542 3345678999999853 4999865 78999999999999998 78
Q ss_pred cceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhcc
Q psy12736 423 RLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 423 ~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~ 502 (567)
+|+||+|+||++||+||+|||++|+||+||||+||||||||+||||||+|+++|||+++|+|+.++|++|||++|++||+
T Consensus 1585 ~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~~~~f~eDLk~l~~~aG~ 1664 (2695)
T 4akg_A 1585 EVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSL 1664 (2695)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hccCCccccCcchhHHHHHHHhhccccceeeee
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNEASFKEDLKSLYNLLGVKNQATVFLF 559 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp~Lf~~eE~~~i~~~~~~~~~~~~~~ 559 (567)
+|+++||+++|+||++|+|||+|| ||++|||||||++||+++|+ +.+|++|+..++
T Consensus 1665 ~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~-~~~r~~~~~~g~ 1721 (2695)
T 4akg_A 1665 KESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLL-NNLRNKTRSLGL 1721 (2695)
T ss_dssp SCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHH-HHHHHHHHHHTC
T ss_pred CCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHH-HHhHHHHHhcCC
Confidence 999999999999999999999999 99999999999999999998 999999887766
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.37 E-value=1.1e-11 Score=155.86 Aligned_cols=334 Identities=16% Similarity=0.173 Sum_probs=202.6
Q ss_pred ccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcceeee-----------------------
Q psy12736 170 GDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA----------------------- 226 (567)
Q Consensus 170 ~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~----------------------- 226 (567)
..-+|-|+-|-|.-.-+-.-+..+.|+++.||+|||||.+++++-+.+...- +.+|
T Consensus 622 ~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~-v~~nc~e~ld~~~lg~~~~g~~~~Gaw 700 (2695)
T 4akg_A 622 PERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVV-VVFNCDDSFDYQVLSRLLVGITQIGAW 700 (2695)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCC-EEEETTSSCCHHHHHHHHHHHHHHTCE
T ss_pred CCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcE-EEEECCCCCChhHhhHHHHHHHhcCCE
Confidence 3458999999999999999999999999999999999999999877654322 1121
Q ss_pred ----c-----------------------------CCCCC------ceEEEEe---ec-----cchh-hhhhccccccccc
Q psy12736 227 ----E-----------------------------LPPTP------AKFHYIF---NL-----RDLS-RIIQGLTATEKII 258 (567)
Q Consensus 227 ----e-----------------------------gPp~g------kk~v~iF---Nl-----~D~~-R~~rg~f~~~~~~ 258 (567)
| -+-.| ..+. +| |. +++. -+.+ +|..+++.
T Consensus 701 ~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~-vfiT~NPgy~g~~eLP~~Lk~-~Fr~v~m~ 778 (2695)
T 4akg_A 701 GCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTA-VFITLNPGYNGRSELPENLKK-SFREFSMK 778 (2695)
T ss_dssp EEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCE-EEEEECCCSSSSCCCCHHHHT-TEEEEECC
T ss_pred eeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCce-EEEEeCCCccCcccccHHHHh-heEEEEee
Confidence 0 01111 1121 22 41 1221 3444 78889999
Q ss_pred cCCHHHHHHHHHHhh----hhhhcCh-HHHHHHHHHhCCCCCCccccccChhhHHHHHhhhhcccccccCCHHHHHHHHh
Q psy12736 259 FNTKEMFVRAWRNEF----TRTICDR-LNTDELVIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWR 333 (567)
Q Consensus 259 ~~s~~sl~~I~~~il----~~~~~~~-i~~y~~i~~~llptp~k~HY~FnlRDlsrv~qGi~~~~~~~~~~~~~l~rLw~ 333 (567)
.|+.+.+..|.-.-. .+.++.+ +.+|+.+..++- .+.||.|+||.+.+|+...-........+...++|...
T Consensus 779 ~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls---~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~al~ 855 (2695)
T 4akg_A 779 SPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCS---SMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESLK 855 (2695)
T ss_dssp CCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSC---CCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhC---cCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Confidence 999998887643211 1233333 678888887753 47899999999998886432221111223334444322
Q ss_pred hhhchhhccccCChhhHHHHHHHHHHHHHhhCCcchhhhccCCceeccccccccCCCCcccccccChHHHHHHHHHHHHH
Q psy12736 334 NEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEE 413 (567)
Q Consensus 334 hE~~RVF~DRLi~~eDr~~f~~~l~~~~~~~f~~~~~~~~~~~llf~d~~~~~~~~~~~~Y~~v~d~~~l~~~~~~~l~~ 413 (567)
.+..-+++ .+|...|..++.++ |+.. . .+. ++..+.+.+.+.+.+
T Consensus 856 ----~~~lpk~~-~~D~~lf~~li~dl----Fp~~-----~---------------~~~------~~~~l~~~i~~~~~~ 900 (2695)
T 4akg_A 856 ----RVILPSLG-DTDELVFKDELSKI----FDSA-----G---------------TPL------NSKAIVQCLKDAGQR 900 (2695)
T ss_dssp ----HHTGGGCC-HHHHHHHHHHHHHH----CCCC-----S---------------CCS------SSSHHHHHHHHHHHH
T ss_pred ----HhccccCc-hhhHHHHHHHHHHh----CCCC-----C---------------CCC------ChHHHHHHHHHHHHH
Confidence 24445553 56888887766543 3210 0 011 222344444444433
Q ss_pred HhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHH----cCCe--EEEEEecCC----
Q psy12736 414 YNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFA----AGYQ--VFTIQLSRG---- 483 (567)
Q Consensus 414 yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i----~~~~--~~~i~~~k~---- 483 (567)
.+ +...+..+..+..+.+.+.. +-.+||||++||||+++.+..|.. .+.+ ++.|+. |.
T Consensus 901 ~~----------l~~~~~~~~K~~ql~e~~~~-r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inp-k~~t~~ 968 (2695)
T 4akg_A 901 SG----------FSMSEEFLKKCMQFYYMQKT-QQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDT-KVLTKE 968 (2695)
T ss_dssp HT----------CCCCHHHHHHHHHHHHHHHH-CSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECT-TTSCHH
T ss_pred cC----------CcccHHHHHHHHHHHHHHHh-cceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCC-CCCCHH
Confidence 22 33446778888888888766 444899999999999999977654 2433 333432 21
Q ss_pred --CC-----hhhHHHHHH-HHHHHhccC-----CC-cEEEEEecCcccchhhhHHhh-hc--------cCCc-------c
Q psy12736 484 --YN-----EASFKEDLK-SLYNLLGVK-----NQ-ATVFLFTAAEIVEEGYQVFTI-QL--------SRGY-------N 533 (567)
Q Consensus 484 --y~-----~~~f~edLk-~~~~~ag~~-----~~-~~vfl~~d~qi~~e~fle~in-lL--------~~Ge-------v 533 (567)
|| ..+|.|.+- .+++++... .+ ...++++ +.++..++|.+| +| .+|| +
T Consensus 969 el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~~~~~~WivfD--G~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~ 1046 (2695)
T 4akg_A 969 SLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFD--SDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNF 1046 (2695)
T ss_dssp HHTTEECTTTCCEECCSHHHHHHHHHTCCCSSCSSEEEEEEEC--SCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSC
T ss_pred HhcceecCCCCeEecChHHHHHHHHHhccccccCCCCeEEEEC--CCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCc
Confidence 22 247776644 344443211 12 4556664 567999999999 75 6676 2
Q ss_pred ccCcchhHHHHHHHhhccccceeee
Q psy12736 534 EASFKEDLKSLYNLLGVKNQATVFL 558 (567)
Q Consensus 534 p~Lf~~eE~~~i~~~~~~~~~~~~~ 558 (567)
.-+|+.+++...--|.+..+++++.
T Consensus 1047 ~llFEv~dL~~ASPATVSRcGmvy~ 1071 (2695)
T 4akg_A 1047 RILFETDNLDHTTPATITRCGLLWF 1071 (2695)
T ss_dssp EEEEEESCCTTSCHHHHHHSEEEEC
T ss_pred EEEEEecccccCCccceeeeeEEEe
Confidence 2367777777655566666666654
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.13 E-value=8.9e-10 Score=139.41 Aligned_cols=407 Identities=17% Similarity=0.222 Sum_probs=229.6
Q ss_pred HHHHHHHHhcCcCChhhHHHHHHHHHH------H----hCCCCCCCCcccccccCcCCCCC--CCeeEEEEECCCC----
Q psy12736 86 FIQSVYASLGASLVAEAQTVFDAHVKN------L----TGFLNVVDSDDRLANYTQIPTAE--SSWYHYTLDRSKN---- 149 (567)
Q Consensus 86 FifsliWs~Gg~l~~~~R~~Fd~~lr~------~----~~~~~~~d~~~~~~~~~~~P~~~--~~vfDy~~d~~~~---- 149 (567)
.+-.++-.+-+.++...|.+....+-. . ....... -+.+- -.-.-||++.+..
T Consensus 492 ~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~-----------~~~dF~W~~qlRyy~~~~~~~~~~ 560 (3245)
T 3vkg_A 492 ILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLT-----------GNKDFDWLYHMRYYYDATQENVLH 560 (3245)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCC-----------STTCHHHHTSEEEEECSSSSSSGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CcchhHHHhhhheeeccccCCcCc
Confidence 344566667778888888887665532 1 1101111 01000 0123467766432
Q ss_pred -ceeeCcccccceeecCC-CCCccccccCcchhhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCcceeee-
Q psy12736 150 -AWVPWRHLVRSYVHDGD-KSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA- 226 (567)
Q Consensus 150 -~w~~W~~~v~~~~~~~~-~~~~~i~VpT~dtvR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~- 226 (567)
.++.-.+. .+.|.-+ ..-..-+|.|+-|-|.---+-.-+..+.+..+.||+|||||.+++++-+.+-..-++ +|
T Consensus 561 ~~~v~~~~~--~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~v-fnC 637 (3245)
T 3vkg_A 561 KLVIHMANA--TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLV-FCC 637 (3245)
T ss_dssp GEEEEETTE--EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEE-EEC
T ss_pred eEEEEEcCc--eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEE-EeC
Confidence 34443322 2333322 233456899999999998888889999999999999999999999987766433221 11
Q ss_pred --------------------------c-------------------------C----CCC-Cc------eEEEEe---ec
Q psy12736 227 --------------------------E-------------------------L----PPT-PA------KFHYIF---NL 241 (567)
Q Consensus 227 --------------------------e-------------------------g----Pp~-gk------k~v~iF---Nl 241 (567)
| + .-. |+ .+- +| |-
T Consensus 638 ~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~-vfiTmNp 716 (3245)
T 3vkg_A 638 DEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMG-IFVTMNP 716 (3245)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCE-EEECBCC
T ss_pred CCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeE-EEEEeCC
Confidence 0 0 001 21 122 22 41
Q ss_pred -----cchh-hhhhccccccccccCCHHHHHHHHHHh--hh--hhhcCh-HHHHHHHHHhCCCCCCccccccChhhHHHH
Q psy12736 242 -----RDLS-RIIQGLTATEKIIFNTKEMFVRAWRNE--FT--RTICDR-LNTDELVIAELPPTPAKFHYIFNLRDLSRI 310 (567)
Q Consensus 242 -----~D~~-R~~rg~f~~~~~~~~s~~sl~~I~~~i--l~--~~~~~~-i~~y~~i~~~llptp~k~HY~FnlRDlsrv 310 (567)
.++. -+.+ +|..+.+..|+.+.+..|--.- +. +.++.+ +.+|+-+.+++ . ...||.|.||-+..|
T Consensus 717 gY~gr~eLP~nLk~-lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~L-S--~Q~HYDfGLRalKsV 792 (3245)
T 3vkg_A 717 GYAGRSNLPDNLKK-LFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQL-S--AQSHYDFGLRALKSV 792 (3245)
T ss_dssp CGGGCCCSCHHHHT-TEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSS-C--CCTTCCCSHHHHHHH
T ss_pred CccCcccChHHHHh-hcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHh-C--CCCCCCCChHHHHHH
Confidence 1111 3444 7888999999998888764221 11 234444 56666555554 3 467999999999988
Q ss_pred Hhhh---hccccccc----CC---------------HHHHHHHHhhhhchhhccccCChhhHHHHHHHHHHHHHhhCCcc
Q psy12736 311 IQGL---TATEKIIF----NT---------------KEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQD 368 (567)
Q Consensus 311 ~qGi---~~~~~~~~----~~---------------~~~l~rLw~hE~~RVF~DRLi~~eDr~~f~~~l~~~~~~~f~~~ 368 (567)
+... .+...... ++ ..-++|... .+-.-+|+. +|...|..++.++ |+.
T Consensus 793 L~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralr----d~nlpKl~~-~D~plF~~li~Dl----FPg- 862 (3245)
T 3vkg_A 793 LVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSIN----DTMIPKLVA-DDIPLIQSLLLDV----FPG- 862 (3245)
T ss_dssp HHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH----HTTTTTSCG-GGHHHHHHHHHHH----STT-
T ss_pred HHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHH----HhccCCCch-hhHHHHHHHHHHh----CCC-
Confidence 7532 12221000 11 001122111 122233322 3555555544433 211
Q ss_pred hhhhccCCceeccccccccCCCCcccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCC
Q psy12736 369 VNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRG 448 (567)
Q Consensus 369 ~~~~~~~~llf~d~~~~~~~~~~~~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~G 448 (567)
. . .+ -.++..+.+.+++.+.+ ++|...+..+.-+..+.-.+..-.|
T Consensus 863 -------------v----~--~~-----~~~~~~l~~ai~~~~~~----------~~L~~~~~~v~KviQLye~~~vRhG 908 (3245)
T 3vkg_A 863 -------------S----Q--LQ-----PIQMDQLRKKIQEIAKQ----------RHLVTKQEWVEKILQLHQILNINHG 908 (3245)
T ss_dssp -------------C----C--CC-----CCCCHHHHHHHHHHHHH----------TTCCCCHHHHHHHHHHHHHHTTCSE
T ss_pred -------------C----C--CC-----CCchHHHHHHHHHHHHH----------cCCccCHHHHHHHHHHHHHHHheee
Confidence 0 0 01 12445555555555443 3455556778888888888776444
Q ss_pred ceEEeccCCCcHhHHHHHHHHH-c---CCeE--EEEEecC-----CC---C--hhhHHHHHHHHH-HHhc-----cCCCc
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFA-A---GYQV--FTIQLSR-----GY---N--EASFKEDLKSLY-NLLG-----VKNQA 506 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i-~---~~~~--~~i~~~k-----~y---~--~~~f~edLk~~~-~~ag-----~~~~~ 506 (567)
++|||++||||+++.+.-+.. . +.+. +.|+... =| + ..||.|.+-..+ +++. -..++
T Consensus 909 -vmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~ 987 (3245)
T 3vkg_A 909 -VMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKR 987 (3245)
T ss_dssp -EEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEE
T ss_pred -EEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCc
Confidence 899999999999998865443 3 3333 2333211 02 2 357887765444 4432 12234
Q ss_pred EEEEEecCcccchhhhHHhh-hc--------cCCcc-------ccCcchhHHHHHHHhhccccceeee
Q psy12736 507 TVFLFTAAEIVEEGYQVFTI-QL--------SRGYN-------EASFKEDLKSLYNLLGVKNQATVFL 558 (567)
Q Consensus 507 ~vfl~~d~qi~~e~fle~in-lL--------~~Gev-------p~Lf~~eE~~~i~~~~~~~~~~~~~ 558 (567)
..++|+ -. +|..+.|.+| +| .+||. .-+|+.+++..---|.+..+++++.
T Consensus 988 ~WIvfD-Gp-VDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGmVy~ 1053 (3245)
T 3vkg_A 988 HWIIFD-GD-VDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWF 1053 (3245)
T ss_dssp EEEEEE-SC-CCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEEEEC
T ss_pred eEEEEC-CC-CCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeeeEEEE
Confidence 566664 33 6889999999 74 78882 2378888888766678888888874
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.86 E-value=5.8e-08 Score=111.09 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=73.4
Q ss_pred EEecHHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC---------------
Q psy12736 426 LVLFEDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG--------------- 483 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~--------------- 483 (567)
++-.+++++++.+..+..+ .|.||+||.|++|+||++++|..|...+..++.++.+.-
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g 539 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSC
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCC
Confidence 4455688888887766554 577899999999999999999999988999998876532
Q ss_pred CChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCcc
Q psy12736 484 YNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYN 533 (567)
Q Consensus 484 y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gev 533 (567)
|.-.+-...+...+.+ ....|++++|-+-..+..++.+. +|..|.+
T Consensus 540 ~~g~~~~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~ 586 (758)
T 1r6b_X 540 YVGFDQGGLLTDAVIK----HPHAVLLLDEIEKAHPDVFNILLQVMDNGTL 586 (758)
T ss_dssp SHHHHHTTHHHHHHHH----CSSEEEEEETGGGSCHHHHHHHHHHHHHSEE
T ss_pred CcCccccchHHHHHHh----CCCcEEEEeCccccCHHHHHHHHHHhcCcEE
Confidence 1110001123333333 33678889988877888888777 8877754
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.69 E-value=1.1e-07 Score=108.85 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=71.4
Q ss_pred EEecHHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCC---ChhhHHHH
Q psy12736 426 LVLFEDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGY---NEASFKED 492 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y---~~~~f~ed 492 (567)
++=.+++++.+.+..+..+ .|.|++||.|++|+||+++++..|... +..++.++.+.-. ... ...
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--~~~ 570 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--GGQ 570 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc--cch
Confidence 4445678888877766554 456789999999999999999888775 6778888765321 111 112
Q ss_pred HHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCccc
Q psy12736 493 LKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGYNE 534 (567)
Q Consensus 493 Lk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Gevp 534 (567)
+...+.. ....|++++|-+-..+.....+. +|..|.+.
T Consensus 571 l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~ 609 (758)
T 3pxi_A 571 LTEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLT 609 (758)
T ss_dssp CHHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC
T ss_pred hhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEE
Confidence 2223332 23458888988888888888888 88887754
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.57 E-value=7e-07 Score=103.43 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred EEecHHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCC---hhhHH--
Q psy12736 426 LVLFEDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYN---EASFK-- 490 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~---~~~f~-- 490 (567)
++=-..+++.+.+..+..+ .|.|++||.|++|+||++++|..+... +..++.+..+.--. .+++.
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~ 639 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 639 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCC
Confidence 3445677888777655543 345899999999999999999888776 66788876542111 11100
Q ss_pred ----------HHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 491 ----------EDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 491 ----------edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
..+...+.. ....|++++|-+-.++..+..+. +|..|.
T Consensus 640 ~~~~~G~~~~g~l~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 688 (854)
T 1qvr_A 640 PPGYVGYEEGGQLTEAVRR----RPYSVILFDEIEKAHPDVFNILLQILDDGR 688 (854)
T ss_dssp -----------CHHHHHHH----CSSEEEEESSGGGSCHHHHHHHHHHHTTTE
T ss_pred CCCCcCccccchHHHHHHh----CCCeEEEEecccccCHHHHHHHHHHhccCc
Confidence 122222222 23468888888777788888787 888775
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.28 E-value=5.1e-07 Score=102.72 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=53.9
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEE----ecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ----LSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~----~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|...+||.|++|+||+.+++..|..++..++.+. +++-.+.++ ..++.++..|- +..|.|++|++-+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese--~~vr~lF~~Ar-~~~P~IifiDEiD 580 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE--ANVREIFDKAR-QAAPCVLFFDELD 580 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH--HHHHHHHHHHH-TTCSEEEECSCGG
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHH--HHHHHHHHHHH-HcCCceeechhhh
Confidence 34556999999999999999999999999999885 344445554 56888998883 5678888887643
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.97 E-value=7e-06 Score=94.32 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=49.1
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.|.+++||+|++|+||++++|..|...+..++.+..+.-.+ ..+....++.++..+.. ..|.+++++|-
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDEi 579 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ-AAPCVLFFDEL 579 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHH-HCSBCCCCSSH
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHh-cCCeEEEEECh
Confidence 46788999999999999999999999999888876443211 11223457777777743 33666777663
No 10
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=0.00029 Score=64.59 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=73.5
Q ss_pred EEecHHHHHHHHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCC----CChhhHH
Q psy12736 426 LVLFEDAREHLTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRG----YNEASFK 490 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~----y~~~~f~ 490 (567)
++--.+.++.+. +.+.. ..++++|+|++|+||+++++..+... +..++.+..... -...++.
T Consensus 24 ~~g~~~~~~~l~---~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1jbk_A 24 VIGRDEEIRRTI---QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp CCSCHHHHHHHH---HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred cccchHHHHHHH---HHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHH
Confidence 333344444443 33433 35789999999999999998776653 677877764421 1234566
Q ss_pred HHHHHHHHHhccCCCcEEEEEecCcccc--------hhhhHHhh-hccCCccccCcc
Q psy12736 491 EDLKSLYNLLGVKNQATVFLFTAAEIVE--------EGYQVFTI-QLSRGYNEASFK 538 (567)
Q Consensus 491 edLk~~~~~ag~~~~~~vfl~~d~qi~~--------e~fle~in-lL~~Gevp~Lf~ 538 (567)
..++.++..+...+++.+++++|.+-.. ....+.++ ++..+.+.-+..
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 157 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGA 157 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEe
Confidence 6677777766556778999999887652 44567777 888887766554
No 11
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.58 E-value=0.00023 Score=65.16 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCC----CChhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRG----YNEASFKEDLKSLYNLLGVKNQATVFLF 511 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~----y~~~~f~edLk~~~~~ag~~~~~~vfl~ 511 (567)
..+++||.|++|+||+++++..+... +..++.+....- -...++.+.++.++..+...+++.++++
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 46789999999999999998776654 677777754321 1234556667777776655567889999
Q ss_pred ecCcccc---------hhhhHHhh-hccCCccccCcc
Q psy12736 512 TAAEIVE---------EGYQVFTI-QLSRGYNEASFK 538 (567)
Q Consensus 512 ~d~qi~~---------e~fle~in-lL~~Gevp~Lf~ 538 (567)
+|.+-.. ..+++.+. ++..+.+.=+.+
T Consensus 122 De~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 122 DEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp TTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred eCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEe
Confidence 9877654 45666676 777777665553
No 12
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.47 E-value=0.00048 Score=68.16 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=68.9
Q ss_pred EEecHHHHHHHHH----HHHHH----hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC---CChhhHHHHHH
Q psy12736 426 LVLFEDAREHLTR----IHRAL----RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG---YNEASFKEDLK 494 (567)
Q Consensus 426 lvlf~dai~hi~r----i~RvL----~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~---y~~~~f~edLk 494 (567)
++-+..+++++.. +.+.+ ..+.+++||.|++|+||+++++..|...++.++.+..... +...+....++
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~ 114 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK 114 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHH
Confidence 3344445555554 44444 4556789999999999999999999999999888865532 23444556677
Q ss_pred HHHHHhccCCCcEEEEEecCccc----------chhhhHHhh-hcc
Q psy12736 495 SLYNLLGVKNQATVFLFTAAEIV----------EEGYQVFTI-QLS 529 (567)
Q Consensus 495 ~~~~~ag~~~~~~vfl~~d~qi~----------~e~fle~in-lL~ 529 (567)
.++..+. ..++.+++++|.+-. ...+++.+. ++.
T Consensus 115 ~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 115 KIFDDAY-KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp HHHHHHH-TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred HHHHHHH-hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 7777663 356788888875432 344556555 554
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.23 E-value=0.0016 Score=61.08 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=54.7
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc-----CCeEEEEEecCCCChhhHHHHHHHHHHHhcc-CCCcEEEEEecCcccchh
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA-----GYQVFTIQLSRGYNEASFKEDLKSLYNLLGV-KNQATVFLFTAAEIVEEG 520 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~-----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~-~~~~~vfl~~d~qi~~e~ 520 (567)
.+|++|.|++|+||+++++..+... ...++.+..+...+.....+.++........ .+++.+++++|.+-..+.
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH
Confidence 3579999999999999998766542 3346677666555665555555555544333 367889999998877665
Q ss_pred hhHHhh
Q psy12736 521 YQVFTI 526 (567)
Q Consensus 521 fle~in 526 (567)
..+.+.
T Consensus 118 ~~~~l~ 123 (226)
T 2chg_A 118 AQAALR 123 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.08 E-value=0.0022 Score=62.49 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCccc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEIV 517 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~ 517 (567)
+..++||.|++|+||+++++..|...+..++.+..+.-.+ ..+-...++.++..+. ...+.+++++|-+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR-ARAPCIVYIDEIDAV 110 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH-HTCSEEEEEECC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH-hcCCeEEEEeCcchh
Confidence 4457999999999999999999999999999887653211 1122345667776664 345788888887654
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.05 E-value=0.0029 Score=64.39 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=68.1
Q ss_pred EEecHHHHHHHHHHHHHH---hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhcc
Q psy12736 426 LVLFEDAREHLTRIHRAL---RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL---~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~ 502 (567)
++--..+++.+.+..+.. ..+.+|+||.|++|+||+++++..|...+..++.+.....-... ++..++..
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~----~~~~~~~~--- 103 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSG----DLAAILTN--- 103 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHH----HHHHHHHT---
T ss_pred hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchh----HHHHHHHh---
Confidence 344445555555444433 23457999999999999999999999999998888765433333 34444443
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
...+.+++++|-+-......+.+. .|..+.
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence 245678888888877777777666 666655
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.0026 Score=62.96 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=52.4
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCccc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEIV 517 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~ 517 (567)
.+..++||.|++|+||+++++..|...+..++.+..+.-.+ ..+....++.++..+. ...|.+++++|-+-.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK-EKAPSIIFIDEIDAI 122 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH-HTCSEEEEEETTHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH-HcCCeEEEEECHHHh
Confidence 35667999999999999999999999999999887553221 2233455666666553 356788888886543
No 17
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0059 Score=63.93 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=53.3
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC----CCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR----GYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k----~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|...+||.|++|+||+.++|-.|.-++..++.+..+. -.|.. ..-++.++..|. +..|+++++++-+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes--e~~vr~lF~~Ar-~~aP~IIFiDEiD 251 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG--SRMVRELFVMAR-EHAPSIIFMDEID 251 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH--HHHHHHHHHHHH-HTCSEEEEEESSS
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH--HHHHHHHHHHHH-HhCCceEeeecch
Confidence 34455999999999999999999999999999997543 33444 356888888875 5678888887644
No 18
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.80 E-value=0.003 Score=72.97 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=64.4
Q ss_pred HHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCCC----ChhhHHHHHHHHHHHh
Q psy12736 436 LTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRGY----NEASFKEDLKSLYNLL 500 (567)
Q Consensus 436 i~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~y----~~~~f~edLk~~~~~a 500 (567)
+.++.++|.. ...|++|+|++|+||+++++..|... +..++.++.+.-. ...+|.+.++.++..+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV 258 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH
Confidence 3444555554 45689999999999999999887764 7888888654321 1236778889988887
Q ss_pred ccCCCcEEEEEecCcccc--------hhhhHHhh-hccCCccccCc
Q psy12736 501 GVKNQATVFLFTAAEIVE--------EGYQVFTI-QLSRGYNEASF 537 (567)
Q Consensus 501 g~~~~~~vfl~~d~qi~~--------e~fle~in-lL~~Gevp~Lf 537 (567)
...+.+++++++|-+-.. ......++ +|..|++.-+.
T Consensus 259 ~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~ 304 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIG 304 (854)
T ss_dssp HTTCSSEEEEECCC-------------------HHHHHTTCCCEEE
T ss_pred HhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEE
Confidence 655678899988876543 33455567 77888776544
No 19
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.79 E-value=0.0048 Score=65.87 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHhcCCC-ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 438 RIHRALRLSRG-HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 438 ri~RvL~~p~G-h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.+.+.+...+. ++||.|++|+||+++++..+...+..+..+.... .+..+.++-+..+.... ..+++.+++++|.+-
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~-~~~~~~iLfIDEI~~ 117 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNR-NAGRRTILFVDEVHR 117 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHH-HTTCCEEEEEETTTC
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhh-hcCCCcEEEEeChhh
Confidence 44455555443 7899999999999999999999999988887442 34554444444433222 246778888888765
Q ss_pred cchhh
Q psy12736 517 VEEGY 521 (567)
Q Consensus 517 ~~e~f 521 (567)
...+.
T Consensus 118 l~~~~ 122 (447)
T 3pvs_A 118 FNKSQ 122 (447)
T ss_dssp C----
T ss_pred hCHHH
Confidence 54433
No 20
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.79 E-value=0.0055 Score=62.98 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=38.5
Q ss_pred eEEecHHHHHHHHHHHHHHhcCC---CceEEeccCCCcHhHHHHHHHHHcCC--eEEEEE
Q psy12736 425 DLVLFEDAREHLTRIHRALRLSR---GHCMVVGVEGGGKRSLVRLASFAAGY--QVFTIQ 479 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~~p~---Gh~LLvG~~GsGr~sl~rlaa~i~~~--~~~~i~ 479 (567)
++|--+.+.+.+..+.+.+.... .++||.|++|+||+++++..|...+. .+..+.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 35555566666666666665543 47899999999999999988877765 344444
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.0011 Score=63.47 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=32.2
Q ss_pred CCCccccccCcchhhHHHHHHHHHh--cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 167 KSFGDILVPTTDSTKLTWILSLMNE--IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 167 ~~~~~i~VpT~dtvR~~~ll~~ll~--~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.+.+.+.........+ ..+.. .+.+++++||+|||||++++.+...+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGAL-KSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSTTTSCC--CCHHHHHHH-HHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CChhhccCCCCCHHHHHHH-HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555532222233333 33343 57899999999999999999887765
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.0052 Score=63.11 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=48.0
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHc---------CCeEEEEEecCCCChhhHH------------------HH-HHHH
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAA---------GYQVFTIQLSRGYNEASFK------------------ED-LKSL 496 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~---------~~~~~~i~~~k~y~~~~f~------------------ed-Lk~~ 496 (567)
.+.++++|.|++|+||+++++..+... +..++.++.....+..++. .+ +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 345689999999999999998887766 6777777755433322111 12 2233
Q ss_pred HHHhccCCCcEEEEEecCcccc
Q psy12736 497 YNLLGVKNQATVFLFTAAEIVE 518 (567)
Q Consensus 497 ~~~ag~~~~~~vfl~~d~qi~~ 518 (567)
.......+++++++++|-+-..
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHhccCCeEEEEEccHhhhc
Confidence 3333335678999999877553
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.001 Score=59.43 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+....++.+...+.|||+.||+|||||++++.+-...
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3444555566789999999999999999998876543
No 24
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.002 Score=65.66 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccCCCcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~~~~~ 222 (567)
.+++||+||+|||||++++.+.+.+....+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 467999999999999999999887633333
No 25
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.66 E-value=0.00096 Score=59.44 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+....+..+...+.|||++||+|||||++++.+-..
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 344455566778999999999999999998776543
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.61 E-value=0.0045 Score=61.95 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=45.3
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHc-------CCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAA-------GYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~-------~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..+.+|+||.|++|+||+++++..|... +..++.+..+.-.+ .......++.++..+ ++.+++++|.
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~vl~iDEi 139 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----MGGVLFIDEA 139 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----TTSEEEEETG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----CCCEEEEECh
Confidence 3456689999999999999998776654 22666765433211 112234566677666 2457788887
Q ss_pred ccc
Q psy12736 515 EIV 517 (567)
Q Consensus 515 qi~ 517 (567)
+-.
T Consensus 140 d~l 142 (309)
T 3syl_A 140 YYL 142 (309)
T ss_dssp GGS
T ss_pred hhh
Confidence 644
No 27
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.0016 Score=59.99 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.+++|+||+|||||++++.+...+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999987765
No 28
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.0046 Score=61.93 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHh-------cCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCCh---hhHH------
Q psy12736 430 EDAREHLTRIHRALR-------LSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNE---ASFK------ 490 (567)
Q Consensus 430 ~dai~hi~ri~RvL~-------~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~---~~f~------ 490 (567)
..+++.+....+-.. .|.+++||+|++|+||+++++..|... +..++.+..+.--.. .++.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 102 (311)
T 4fcw_A 23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGY 102 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcc
Confidence 455555554433322 346899999999999999999887765 445777765432111 1110
Q ss_pred ------HHHHHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 491 ------EDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 491 ------edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
..+...+.. ....++++++-+-..+.....+- +|..|.
T Consensus 103 ~~~~~~~~~~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~ 147 (311)
T 4fcw_A 103 VGYEEGGQLTEAVRR----RPYSVILFDAIEKAHPDVFNILLQMLDDGR 147 (311)
T ss_dssp TTTTTCCHHHHHHHH----CSSEEEEEETGGGSCHHHHHHHHHHHHHSE
T ss_pred ccccccchHHHHHHh----CCCeEEEEeChhhcCHHHHHHHHHHHhcCE
Confidence 122233332 23467888887777776666666 666554
No 29
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0098 Score=62.65 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=68.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcC
Q psy12736 393 YYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAG 472 (567)
Q Consensus 393 ~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~ 472 (567)
.|..+.-.+..++.+.+.+.-.-.. .+.. .+.-..|...+||.|++|+||+++++-.|.-++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~------------pe~f------~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTH------------PELY------EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHC------------CHHH------HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred cceecCcHHHHHHHHHHHHHHHHhC------------HHHH------HhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 4666666677777676665432211 0111 122223445699999999999999999999999
Q ss_pred CeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 473 YQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 473 ~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
..++.+..+ +.++..+ .-++.++..|. +..|++++++|-+
T Consensus 242 ~~fi~v~~s~l~sk~vGese--k~ir~lF~~Ar-~~aP~IIfiDEiD 285 (437)
T 4b4t_I 242 ATFLRIVGSELIQKYLGDGP--RLCRQIFKVAG-ENAPSIVFIDEID 285 (437)
T ss_dssp CEEEEEESGGGCCSSSSHHH--HHHHHHHHHHH-HTCSEEEEEEEES
T ss_pred CCEEEEEHHHhhhccCchHH--HHHHHHHHHHH-hcCCcEEEEehhh
Confidence 999999744 3445443 45777777774 5678888887643
No 30
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.55 E-value=0.0065 Score=54.02 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcE
Q psy12736 431 DAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQAT 507 (567)
Q Consensus 431 dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~ 507 (567)
.+++.+.+..+.+.....|+||.|++|+||+++++..+..+ +..++ +....-.+. .+++..+..+. .-
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----~~~~~~~~~a~----~g 78 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----PQLNDFIALAQ----GG 78 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----SCHHHHHHHHT----TS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----hhhhcHHHHcC----Cc
Confidence 44555555444445667899999999999999999988876 66777 776643332 23444555552 23
Q ss_pred EEEEecCcccchhhhHHhh
Q psy12736 508 VFLFTAAEIVEEGYQVFTI 526 (567)
Q Consensus 508 vfl~~d~qi~~e~fle~in 526 (567)
+++++|-+-......+.+-
T Consensus 79 ~l~ldei~~l~~~~q~~Ll 97 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLV 97 (145)
T ss_dssp CEEEECGGGSCHHHHHHHH
T ss_pred EEEEcChHHCCHHHHHHHH
Confidence 4667776655555544444
No 31
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0072 Score=64.01 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=52.5
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|...+||.|++|+||+++++-.|.-++..++.+..+ +..+..+ ..++.++..|- ...|++++++|-+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese--~~ir~lF~~A~-~~aP~IifiDEiD 284 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA--KLVRDAFALAK-EKAPTIIFIDELD 284 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHH--HHHHHHHHHHH-HHCSEEEEEECTH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHH--HHHHHHHHHHH-hcCCeEEeecchh
Confidence 4456699999999999999999999999999999754 3344443 56777777664 4568888887643
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0041 Score=67.56 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHH---------HHHh----ccCCCcEEEEEec
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSL---------YNLL----GVKNQATVFLFTA 513 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~---------~~~a----g~~~~~~vfl~~d 513 (567)
..++||.|++|+||+++++..|...++.+++++.+...+.....+.++.+ +..+ ...+++.|++++|
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDE 156 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDE 156 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEEC
Confidence 45789999999999999999999999999988766544432222222211 1111 1236788999988
Q ss_pred Ccccc---hhhhHHhh-hccCCccc
Q psy12736 514 AEIVE---EGYQVFTI-QLSRGYNE 534 (567)
Q Consensus 514 ~qi~~---e~fle~in-lL~~Gevp 534 (567)
.+-.. ...++.++ ++..+.+|
T Consensus 157 id~l~~~~~~~l~~L~~~l~~~~~~ 181 (516)
T 1sxj_A 157 VDGMSGGDRGGVGQLAQFCRKTSTP 181 (516)
T ss_dssp GGGCCTTSTTHHHHHHHHHHHCSSC
T ss_pred CCccchhhHHHHHHHHHHHHhcCCC
Confidence 76543 23445555 55554443
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.52 E-value=0.0046 Score=62.50 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred EEecHHHHHHHHHHHHHHhcC-CCce-EEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccC
Q psy12736 426 LVLFEDAREHLTRIHRALRLS-RGHC-MVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVK 503 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p-~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~ 503 (567)
++--.++++.+.+. +... ..|+ |+.|++|+||+++++..|...+.+++.++.+. .+....++.++.........
T Consensus 28 ivg~~~~~~~l~~~---l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 28 CILPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD-CKIDFVRGPLTNFASAASFD 103 (324)
T ss_dssp SCCCHHHHHHHHHH---HHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT-CCHHHHHTHHHHHHHBCCCS
T ss_pred HhCcHHHHHHHHHH---HHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc-cCHHHHHHHHHHHHhhcccC
Confidence 44444555444433 3332 2355 55566999999999999999999999988543 45555555555555555556
Q ss_pred CCcEEEEEecCcccc
Q psy12736 504 NQATVFLFTAAEIVE 518 (567)
Q Consensus 504 ~~~~vfl~~d~qi~~ 518 (567)
+.+.+++++|.+...
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 688899999987665
No 34
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.51 E-value=0.0026 Score=67.90 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=72.1
Q ss_pred HHHHHhcCC--CeEEeccCCCCchhhHHHHHhccCCCcceeee-------------c----CCCCCceEEEEe--ecc--
Q psy12736 186 LSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA-------------E----LPPTPAKFHYIF--NLR-- 242 (567)
Q Consensus 186 l~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~-------------e----gPp~gkk~v~iF--Nl~-- 242 (567)
+...+..++ ++||+||+|||||++++.+.+.+.. .+..++ + .+..+++.+ +| .+.
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~-~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~i-LfIDEI~~l 118 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA-DVERISAVTSGVKEIREAIERARQNRNAGRRTI-LFVDEVHRF 118 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC-EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEE-EEEETTTCC
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC-CeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcE-EEEeChhhh
Confidence 344455554 6999999999999999988876543 333333 0 222444555 44 110
Q ss_pred -------------------------c----h-hhhhhccccccccccCCHHHHHHHHHHhhhhh---hcC-----hHHHH
Q psy12736 243 -------------------------D----L-SRIIQGLTATEKIIFNTKEMFVRAWRNEFTRT---ICD-----RLNTD 284 (567)
Q Consensus 243 -------------------------D----~-~R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~---~~~-----~i~~y 284 (567)
+ + ..+.+ ++.++.+..++.+.+..|....+... +.. .-+..
T Consensus 119 ~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s-R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al 197 (447)
T 3pvs_A 119 NKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS-RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETR 197 (447)
T ss_dssp ------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHH
T ss_pred CHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC-ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHH
Confidence 0 1 15666 78888899999999999998887641 110 11233
Q ss_pred HHHHHhCCCCCCccccccChhhHHHHHhhhhc
Q psy12736 285 ELVIAELPPTPAKFHYIFNLRDLSRIIQGLTA 316 (567)
Q Consensus 285 ~~i~~~llptp~k~HY~FnlRDlsrv~qGi~~ 316 (567)
+.+... ..=|+|.+..+++-+..
T Consensus 198 ~~L~~~---------~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 198 RAIAEL---------VNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHHHH---------HCSCHHHHHHHHHHHHH
T ss_pred HHHHHH---------CCCCHHHHHHHHHHHHH
Confidence 333322 12477888877776654
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.014 Score=61.99 Aligned_cols=68 Identities=12% Similarity=0.243 Sum_probs=52.9
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|...+||.|++|+||+++++-.|.-++..++.+..+ +..+..+ ..++.++..|. ...|+++++++-+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese--~~ir~~F~~A~-~~~P~IifiDEiD 284 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA--RIIREMFAYAK-EHEPCIIFMDEVD 284 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHH--HHHHHHHHHHH-HSCSEEEEEECCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHH--HHHHHHHHHHH-hcCCceeeeeccc
Confidence 4455699999999999999999999999999999754 3344443 45777777774 5678888887654
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.50 E-value=0.0019 Score=60.65 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++|+||+|||||++++.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887765
No 37
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.50 E-value=0.0018 Score=63.70 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 180 TKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 180 vR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+....+..+...+.|+||+||+|||||++++.+-+..
T Consensus 16 ~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp HHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 34444566667789999999999999999999887754
No 38
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.013 Score=62.33 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=53.0
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec----CCCChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS----RGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~----k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|...+||.|++|+||+.++|-.|.-++..++.+..+ +.++..+ ..++.++..|. ...|+++++++-+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGese--k~ir~lF~~Ar-~~aP~IIfiDEiD 312 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGA--RMVRELFEMAR-TKKACIIFFDEID 312 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHH--HHHHHHHHHHH-HTCSEEEEEECCT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHH--HHHHHHHHHHH-hcCCceEeecccc
Confidence 3455699999999999999999999999999999754 3345443 56778887774 4678888887654
No 39
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0062 Score=59.40 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..+++|+|++|+||++++|..|...+..++.+..+.-.+ ..+....++.++..+. .+.|.+++++|-
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~il~iDei 113 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK-KAAPCIIFIDEI 113 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH-TTCSEEEEETTH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH-HcCCeeehhhhh
Confidence 345999999999999999999999888888776432111 1112345666776663 355777777664
No 40
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.014 Score=61.80 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=67.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHH-HhcCCCceEEeccCCCcHhHHHHHHHHHc
Q psy12736 393 YYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRA-LRLSRGHCMVVGVEGGGKRSLVRLASFAA 471 (567)
Q Consensus 393 ~Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~Rv-L~~p~Gh~LLvG~~GsGr~sl~rlaa~i~ 471 (567)
.|..+.-.+..++.+.+.+.-.-.. .+.. .+. +..|+ .+||.|++|+||++++|-.|.-+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~------------p~~~------~~~g~~~pr-GiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQ------------ADLY------EQIGIDPPR-GVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHC------------HHHH------HHHCCCCCC-EEEEESCTTTTHHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhC------------HHHH------HhCCCCCCc-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3555555666666666665433221 1111 121 23344 59999999999999999999999
Q ss_pred CCeEEEEEecC----CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 472 GYQVFTIQLSR----GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 472 ~~~~~~i~~~k----~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
+..++.+..+. ..+..+ .-++.++..|. +..|+++++++-
T Consensus 231 ~~~~~~v~~~~l~~~~~Ge~e--~~ir~lF~~A~-~~aP~IifiDEi 274 (428)
T 4b4t_K 231 KAAFIRVNGSEFVHKYLGEGP--RMVRDVFRLAR-ENAPSIIFIDEV 274 (428)
T ss_dssp TCEEEEEEGGGTCCSSCSHHH--HHHHHHHHHHH-HTCSEEEEEECT
T ss_pred CCCeEEEecchhhccccchhH--HHHHHHHHHHH-HcCCCeeechhh
Confidence 99999998553 334433 56788888774 567888888764
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.37 E-value=0.0066 Score=63.32 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=51.4
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
..|..++||.|++|+||+++++..|...+..++.+..+.-.+ ..+....++.++..+. ...+.+++++|-+-
T Consensus 145 ~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-~~~~~il~iDEid~ 218 (389)
T 3vfd_A 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR-ELQPSIIFIDQVDS 218 (389)
T ss_dssp GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH-HSSSEEEEEETGGG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH-hcCCeEEEEECchh
Confidence 456778999999999999999999999999999987654222 1223445666666654 34567888887643
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.36 E-value=0.0062 Score=61.80 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=52.9
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCC--ChhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGY--NEASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y--~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.|..++||.|++|+||+++++..|...+..++.+..+.-. -..+....++.++..+. ..+|.+++++|-+-
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~ 121 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR-ENKPSIIFIDQVDA 121 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH-HTSSEEEEEECGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH-hcCCeEEEechhhh
Confidence 4667899999999999999999999999999998754211 12234556777777664 45778888887653
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.35 E-value=0.014 Score=55.07 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=48.5
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHHHHHHHHhc--
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDLKSLYNLLG-- 501 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edLk~~~~~ag-- 501 (567)
+.++|.|++|+||+++++..+...+. .++.+.... ....++++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 121 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVEDTRDLLDNVQYA 121 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC----GGGHHHHHHHHHSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc----cccHHHHHHHHHHhhhc
Confidence 35799999999999999877654432 233333221 123456666666554
Q ss_pred -cCCCcEEEEEecCcccchhhhHHhh
Q psy12736 502 -VKNQATVFLFTAAEIVEEGYQVFTI 526 (567)
Q Consensus 502 -~~~~~~vfl~~d~qi~~e~fle~in 526 (567)
..+++.+++++|.+-.++..++.+-
T Consensus 122 ~~~~~~~vlviDe~~~l~~~~~~~l~ 147 (250)
T 1njg_A 122 PARGRFKVYLIDEVHMLSRHSFNALL 147 (250)
T ss_dssp CSSSSSEEEEEETGGGSCHHHHHHHH
T ss_pred hhcCCceEEEEECcccccHHHHHHHH
Confidence 3567899999998876655554443
No 44
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.35 E-value=0.0016 Score=60.98 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=24.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+|++|+||+|+|||++++.++...+.
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 379999999999999999999988764
No 45
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0013 Score=61.71 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=24.2
Q ss_pred HHHHhcC--CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIK--RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++..+ .+++++||+|||||++++.+.+.+
T Consensus 30 ~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 30 KGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444 469999999999999999988765
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.32 E-value=0.0029 Score=63.33 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=52.7
Q ss_pred CceEEeccCCCcHhHHHHHHHHHc-----CCeEEEEEecCCCChhhHHHHHHHHHHHhccC-CCcEEEEEecCcccchhh
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAA-----GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVK-NQATVFLFTAAEIVEEGY 521 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~-----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~-~~~~vfl~~d~qi~~e~f 521 (567)
.|+||.|++|+||+++++..+... +..+..++.+...+....++.++......... +++.+++++|.+-.....
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 118 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA 118 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH
Confidence 479999999999999998776553 23466777665555555555555555444443 567888888877665544
Q ss_pred hHHhh
Q psy12736 522 QVFTI 526 (567)
Q Consensus 522 le~in 526 (567)
.+.+-
T Consensus 119 ~~~L~ 123 (319)
T 2chq_A 119 QAALR 123 (319)
T ss_dssp HHTTG
T ss_pred HHHHH
Confidence 44444
No 47
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.30 E-value=0.0085 Score=60.29 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHh
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFT 525 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~i 525 (567)
+..++||.|++|+||+++++..+...+..++.+..+..... .++...+..+ ...+.+++++|-+-......+.+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~--~~~~~~l~lDEi~~l~~~~~~~L 110 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANS--LEEGDILFIDEIHRLSRQAEEHL 110 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH----HHHHHHHTTT--CCTTCEEEETTTTSCCHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh----HHHHHHHHHh--ccCCCEEEEECCcccccchHHHH
Confidence 45789999999999999999999888888877765433333 3444444431 23566788888776665555544
Q ss_pred h-hccC
Q psy12736 526 I-QLSR 530 (567)
Q Consensus 526 n-lL~~ 530 (567)
- +|..
T Consensus 111 ~~~l~~ 116 (324)
T 1hqc_A 111 YPAMED 116 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 4 4443
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.29 E-value=0.0066 Score=64.65 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
..+++||+||+|||||++++.+.+.+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~ 193 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANN 193 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3478999999999999999998877633
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.27 E-value=0.013 Score=60.31 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred EEecHHHHHHHHHHHHH----------HhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHH
Q psy12736 426 LVLFEDAREHLTRIHRA----------LRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDL 493 (567)
Q Consensus 426 lvlf~dai~hi~ri~Rv----------L~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edL 493 (567)
++=..++++.+.+.... +..+..++||.|++|+||+++++..|...+..++.+..+.-.+ ..+....+
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~ 165 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV 165 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHH
Confidence 33345555555544332 3345678999999999999999999999999999997654322 22344556
Q ss_pred HHHHHHhccCCCcEEEEEecCc
Q psy12736 494 KSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~d~q 515 (567)
+.++..+. ..++.+++++|-+
T Consensus 166 ~~~~~~a~-~~~~~vl~iDEid 186 (357)
T 3d8b_A 166 RALFAVAR-CQQPAVIFIDEID 186 (357)
T ss_dssp HHHHHHHH-HTCSEEEEEETHH
T ss_pred HHHHHHHH-hcCCeEEEEeCch
Confidence 66666654 3567788888753
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.26 E-value=0.004 Score=63.07 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCCccccccCcchhhHHHHHHHHHhc----CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 166 DKSFGDILVPTTDSTKLTWILSLMNEI----KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 166 ~~~~~~i~VpT~dtvR~~~ll~~ll~~----~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|.+.++..........+.. ++.. +.|++|+||+|||||++++.+.+.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~-~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKE-ALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHH-HHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHH-HHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3345554443333334444333 4433 3699999999999999999987765
No 51
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.016 Score=57.53 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=50.2
Q ss_pred HhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 443 LRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 443 L~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
+..|+| ++|+|++|+||++|+|..|...+...+.+.-..-.+ ..+....++.++..+. ...|.+.++++-+
T Consensus 41 l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~~~Deid 113 (274)
T 2x8a_A 41 LVTPAG-VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVIFFDEVD 113 (274)
T ss_dssp CCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEEEEETCT
T ss_pred CCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeEeeehhh
Confidence 455677 999999999999999999999998877776432211 2345566777777763 2356666666543
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.24 E-value=0.015 Score=57.86 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=51.1
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
..|..++||.|++|+||+++++..|...+..++.+..+.-.+ ..+....++.++..+. ...|.+++++|-+-
T Consensus 51 ~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR-HMQPSIIFIDEVDS 124 (297)
T ss_dssp GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH-HTCSEEEEEETGGG
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH-HcCCcEEEeccHHH
Confidence 456778999999999999999999999999999887654221 1123344555555553 35677888887543
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0037 Score=66.28 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+-+||+||||||||++++.+...+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999877653
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.15 E-value=0.01 Score=61.38 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=47.6
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC----CCChhhHHHHHHHHHHHhc---cCCCcEEEEEecCcc
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR----GYNEASFKEDLKSLYNLLG---VKNQATVFLFTAAEI 516 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k----~y~~~~f~edLk~~~~~ag---~~~~~~vfl~~d~qi 516 (567)
..+.+|+||.|++|+||+++++..|...+..++.+..+. +|.-.+....+..++..+. ....+.+++++|.+-
T Consensus 69 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 148 (376)
T 1um8_A 69 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDK 148 (376)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGG
T ss_pred ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHH
Confidence 446789999999999999999999999999998887543 2211122233444443321 012456777787765
Q ss_pred cchh
Q psy12736 517 VEEG 520 (567)
Q Consensus 517 ~~e~ 520 (567)
....
T Consensus 149 l~~~ 152 (376)
T 1um8_A 149 ISRL 152 (376)
T ss_dssp C---
T ss_pred Hhhh
Confidence 5444
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.13 E-value=0.017 Score=65.63 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=64.5
Q ss_pred HHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCC----CChhhHHHHHHHHHHHhcc
Q psy12736 438 RIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRG----YNEASFKEDLKSLYNLLGV 502 (567)
Q Consensus 438 ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~----y~~~~f~edLk~~~~~ag~ 502 (567)
++.++|.. ...|+||+|++|+||+++++..+... +..++.+....- -...+|.+.++.++..+..
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh
Confidence 44445554 46689999999999999998777653 667777654321 1234677888988887753
Q ss_pred CCCcEEEEEecCccc---------chhhhHHhh-hccCCccc
Q psy12736 503 KNQATVFLFTAAEIV---------EEGYQVFTI-QLSRGYNE 534 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~---------~e~fle~in-lL~~Gevp 534 (567)
.++.+++++|-+-. .......++ ++..|++.
T Consensus 277 -~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~ 317 (758)
T 1r6b_X 277 -DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR 317 (758)
T ss_dssp -SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCE
T ss_pred -cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeE
Confidence 35678888887654 233345566 77777765
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.12 E-value=0.023 Score=61.01 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=49.8
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.|.| +||+|++|+||++++|..|.-.+..++.+..+.-.. ...-...++.++..|- .+.|.+++++|-+-
T Consensus 48 ~p~g-vLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~-~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 48 MPKG-ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK-AHAPCIVFIDEIDA 119 (476)
T ss_dssp CCSE-EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH-HTCSEEEEEETGGG
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH-hcCCCEEEEechhh
Confidence 4555 999999999999999999999999999987553211 0111234566666663 35688888887643
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.09 E-value=0.014 Score=58.94 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHhcCC---CceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHHHHHHHhcc------CCCcE
Q psy12736 440 HRALRLSR---GHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLKSLYNLLGV------KNQAT 507 (567)
Q Consensus 440 ~RvL~~p~---Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~------~~~~~ 507 (567)
.+++..|. .+++|.|++|+||+++++..+... +..++.++.. ++.+++...+..... ..++.
T Consensus 27 ~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (324)
T 1l8q_A 27 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD------DFAQAMVEHLKKGTINEFRNMYKSVD 100 (324)
T ss_dssp HHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH------HHHHHHHHHHHHTCHHHHHHHHHTCS
T ss_pred HHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH------HHHHHHHHHHHcCcHHHHHHHhcCCC
Confidence 34445553 578999999999999999888766 7888887643 233333322221110 12366
Q ss_pred EEEEecCccc
Q psy12736 508 VFLFTAAEIV 517 (567)
Q Consensus 508 vfl~~d~qi~ 517 (567)
+++++|-|-.
T Consensus 101 vL~iDEi~~l 110 (324)
T 1l8q_A 101 LLLLDDVQFL 110 (324)
T ss_dssp EEEEECGGGG
T ss_pred EEEEcCcccc
Confidence 7888886554
No 58
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.017 Score=58.59 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHc-CCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCccc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAA-GYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAEIV 517 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~-~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~ 517 (567)
.|..++||.|++|+||+++++..|..+ +..++.+..+.-.+ ..+....++.++..+. ..+|.+++++|-+-.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~-~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEIDSL 117 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH-HTSSEEEEEETTTGG
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH-hcCCcEEEeecHHHh
Confidence 566789999999999999999888877 88888887543211 1122345666776663 456888888876543
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0062 Score=63.78 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+-+||.||||||||++++.+-....
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 3467899999999999999999877653
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0068 Score=60.71 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=46.5
Q ss_pred CceEEeccCCCcHhHHHHHHHHHc-----CCeEEEEEecCCCChhhHHHHHHHHHH-Hhcc-CCCcEEEEEecCcccch
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAA-----GYQVFTIQLSRGYNEASFKEDLKSLYN-LLGV-KNQATVFLFTAAEIVEE 519 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~-----~~~~~~i~~~k~y~~~~f~edLk~~~~-~ag~-~~~~~vfl~~d~qi~~e 519 (567)
.|+||.|++|+||+++++..+... +..++.++.+...+..+.++-++.+.. ..+. .+++.+++++|.+-...
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 469999999999999998776553 334666665544455544444443332 1233 45688888998776544
No 61
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.07 E-value=0.0021 Score=58.72 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+++|+||+|||||++++.+.+.+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999887653
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0028 Score=64.52 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=28.3
Q ss_pred HHHHHHHHHhc--CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 182 LTWILSLMNEI--KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 182 ~~~ll~~ll~~--~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
....+...+.. +.+++++||||||||++++.+++.+.
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33355555554 45699999999999999999998764
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.04 E-value=0.046 Score=56.08 Aligned_cols=77 Identities=14% Similarity=-0.026 Sum_probs=51.0
Q ss_pred ceEEeccCCCcHhHHHHHHHHHc----CCeEEEEEecCCCChhh----------------------HHHHHHHHHHHhcc
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAA----GYQVFTIQLSRGYNEAS----------------------FKEDLKSLYNLLGV 502 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~----~~~~~~i~~~k~y~~~~----------------------f~edLk~~~~~ag~ 502 (567)
+++|.|++|+||+++++..+... +..++.++.....+..+ ..+.+...+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--- 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--- 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh---
Confidence 68999999999999998877665 56677777544332222 22222222222
Q ss_pred CCCcEEEEEecCcccchhhhHHhh-hc
Q psy12736 503 KNQATVFLFTAAEIVEEGYQVFTI-QL 528 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~e~fle~in-lL 528 (567)
.+++.+++++|.+-.++..++.+- ++
T Consensus 123 ~~~~~vlilDE~~~l~~~~~~~L~~~~ 149 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPDILSTFIRLG 149 (389)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHHHHHT
T ss_pred cCCeEEEEEECccccchHHHHHHHHHH
Confidence 356899999998877777766664 44
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.03 E-value=0.013 Score=58.32 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC----CChhhHHHHHHHHHHHh-c-c--CCCcEEEEEecCccc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG----YNEASFKEDLKSLYNLL-G-V--KNQATVFLFTAAEIV 517 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~----y~~~~f~edLk~~~~~a-g-~--~~~~~vfl~~d~qi~ 517 (567)
+.+++||.|++|+||+++++..|...+..++.+..+.- |-..+-...++.++..+ | + .+.+.|++++|-+-.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 46789999999999999999999998999998876542 21111112233433322 0 0 023668888876654
Q ss_pred c
Q psy12736 518 E 518 (567)
Q Consensus 518 ~ 518 (567)
.
T Consensus 129 ~ 129 (310)
T 1ofh_A 129 C 129 (310)
T ss_dssp S
T ss_pred C
Confidence 3
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.03 E-value=0.018 Score=61.36 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcC--CeEEEEEecCC----CChhhHHHHHHHHHHHh-c-cCCCcEEEEEecC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAG--YQVFTIQLSRG----YNEASFKEDLKSLYNLL-G-VKNQATVFLFTAA 514 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~--~~~~~i~~~k~----y~~~~f~edLk~~~~~a-g-~~~~~~vfl~~d~ 514 (567)
|.+++||.|++|+||+++++..|...+ ..++.+..+.- .+..+ .++.++..| | ....|.+++++|-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~a~~~~~~~~~il~iDEi 135 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE---VLMENFRRAIGLRIKETKEVYEGEV 135 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHH---HHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhH---HHHHHHHHHHhhhhcCCcEEEEech
Confidence 567899999999999999999999988 77888875432 33332 388888887 2 2456777776653
No 66
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.00 E-value=0.0095 Score=61.45 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=51.1
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEecCccc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIV 517 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~ 517 (567)
.|..++||.|++|+||+++++..|...+..++.+..+. .|- .+....++.++..+. .++|.+++++|-+-.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~-g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM-GESEKLVKQLFAMAR-ENKPSIIFIDQVDAL 155 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----CHHHHHHHHHHHH-HTSSEEEEEECGGGG
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc-chHHHHHHHHHHHHH-HcCCeEEEEechHhh
Confidence 45568999999999999999999999999999986432 221 122345666666653 457888888876643
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.99 E-value=0.0067 Score=65.05 Aligned_cols=82 Identities=12% Similarity=0.251 Sum_probs=50.4
Q ss_pred EEecHHHHHHHHHHHHHHh-cCCCceEEeccCCCcHhHHHHHHHHH----------cCCeEEEEEecCCCChhhHHHHHH
Q psy12736 426 LVLFEDAREHLTRIHRALR-LSRGHCMVVGVEGGGKRSLVRLASFA----------AGYQVFTIQLSRGYNEASFKEDLK 494 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~-~p~Gh~LLvG~~GsGr~sl~rlaa~i----------~~~~~~~i~~~k~y~~~~f~edLk 494 (567)
++=-++.++.+.. +|. ...+|+||+|++|+||+++++..|.. .+..++.++.+.. ...+|.+.++
T Consensus 182 iiGr~~~i~~l~~---~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~-~~g~~e~~~~ 257 (468)
T 3pxg_A 182 VIGRSKEIQRVIE---VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK-YRGEFEDRLK 257 (468)
T ss_dssp CCCCHHHHHHHHH---HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHH
T ss_pred ccCcHHHHHHHHH---HHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc-ccchHHHHHH
Confidence 4445556665544 443 35679999999999999999987766 3778888877622 2345556777
Q ss_pred HHHHHhccCCCcEEEEEe
Q psy12736 495 SLYNLLGVKNQATVFLFT 512 (567)
Q Consensus 495 ~~~~~ag~~~~~~vfl~~ 512 (567)
.++..+.. ..+.+++++
T Consensus 258 ~~~~~~~~-~~~~iLfiD 274 (468)
T 3pxg_A 258 KVMDEIRQ-AGNIILFID 274 (468)
T ss_dssp HHHHHHHT-CCCCEEEEC
T ss_pred HHHHHHHh-cCCeEEEEe
Confidence 87776643 345555554
No 68
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.99 E-value=0.0044 Score=60.33 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++||+||+|||||++++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999887765
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.97 E-value=0.012 Score=66.89 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=55.3
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEe----cCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQL----SRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~----~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.|..++||.|++|+||+.++|..|.-++..++.+.. ++.++.. ...++.++..|- ++.|.++++++-+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ges--e~~lr~lF~~A~-~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES--ESNLRKAFEEAE-KNAPAIIFIDELDA 308 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHH--HHHHHHHHHHHT-TSCSEEEEEESGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHH--HHHHHHHHHHHH-HcCCeEEEEehhcc
Confidence 345679999999999999999999999999999973 4555544 366888888884 67899999887544
No 70
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.96 E-value=0.011 Score=59.25 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=47.2
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhc---cCCCcEEEEEecC
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLG---VKNQATVFLFTAA 514 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag---~~~~~~vfl~~d~ 514 (567)
.+||.|++|+||+++++..|.-.+..++.+..+. .|- .+-...++.++..|. ....|.|++++|-
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~-g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNA-GEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccC-chhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 5788899999999999999999999999997432 221 112345666776662 3567888888875
No 71
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.96 E-value=0.022 Score=61.50 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=48.8
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCC--hhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYN--EASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~--~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|.| +||+|++|+||++|+|..|...+..++.+..+.-.. .......++.++..+. ...|.++++++-+
T Consensus 63 ip~G-vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~-~~~p~il~IDEId 133 (499)
T 2dhr_A 63 IPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEID 133 (499)
T ss_dssp CCSE-EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS-SSSSCEEEEECGG
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH-hcCCCEEEEehHH
Confidence 4666 999999999999999999999998888886542111 1233455666666653 3456777777664
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.014 Score=58.54 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=46.0
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcC-----CeEEEEEecCCCChhhHHHHHHHHHHHhccC-CCcEEEEEecCcccchhh
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAG-----YQVFTIQLSRGYNEASFKEDLKSLYNLLGVK-NQATVFLFTAAEIVEEGY 521 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~-----~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~-~~~~vfl~~d~qi~~e~f 521 (567)
+|+||.|++|+||+++++..+.... ..++.+..+...+....++.++......... +++.+++++|.+-.....
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 126 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 126 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH
Confidence 4799999999999999987765532 2355565443223333444444444333333 567888888877655443
No 73
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0067 Score=64.34 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-.+-+||+||||||||++++.+...+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 357899999999999999999877653
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.88 E-value=0.0072 Score=62.35 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC----CChhhHHHHHHHHHHHhcc---CCCcEEEEEecCc
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG----YNEASFKEDLKSLYNLLGV---KNQATVFLFTAAE 515 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~----y~~~~f~edLk~~~~~ag~---~~~~~vfl~~d~q 515 (567)
|.+|+||.|++|+||++++|..|...+..++.+..+.- |--.+....++.++..+.. ...+.++++++-+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid 126 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQID 126 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChh
Confidence 67899999999999999999999999999999876531 1111112334455544421 1346677787765
No 75
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.85 E-value=0.0045 Score=61.23 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.8
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++||+||+|||||++++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 457889999999999999999987765
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.82 E-value=0.035 Score=53.86 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=61.8
Q ss_pred cccccChHHHHHHHHHHHHHHhhhhcccCcceEEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCC
Q psy12736 394 YEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGY 473 (567)
Q Consensus 394 Y~~v~d~~~l~~~~~~~l~~yn~~~~~~~~~~lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~ 473 (567)
++++.-.+..+..+++....|... .++..+. ++.|.| ++|+|++|+||+++++..|...+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~-------------~~~~~~~-----~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~ 75 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNP-------------SRFHEMG-----ARIPKG-VLLVGPPGVGKTHLARAVAGEARV 75 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCH-------------HHHHHTT-----CCCCSE-EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCH-------------HHHHHcC-----CCCCCe-EEEECCCCCCHHHHHHHHHHHhCC
Confidence 445555556666666655555322 1122111 345677 999999999999999999998887
Q ss_pred eEEEEEecC--CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 474 QVFTIQLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 474 ~~~~i~~~k--~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..+.+.-.. .....+....++.++..+. ...|.++++++-
T Consensus 76 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~~Dei 117 (254)
T 1ixz_A 76 PFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 117 (254)
T ss_dssp CEEEEEHHHHHHSCTTHHHHHHHHHHHHHT-TSSSEEEEEETH
T ss_pred CEEEeeHHHHHHHHhhHHHHHHHHHHHHHH-hcCCeEEEehhh
Confidence 777665321 0111233456777777764 235667777665
No 77
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.81 E-value=0.0046 Score=63.53 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcC---CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 182 LTWILSLMNEIK---RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 182 ~~~ll~~ll~~~---~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+.+.+-... +++||+||+|||||++++.+.+.+.
T Consensus 56 l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 56 AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444433 4699999999999999999988764
No 78
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.78 E-value=0.0059 Score=59.85 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+++||+||+|||||++++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 36789999999999999999987765
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.77 E-value=0.029 Score=54.80 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcC---CeEEEEEecCCCChhhHHHHHH-------------
Q psy12736 431 DAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAG---YQVFTIQLSRGYNEASFKEDLK------------- 494 (567)
Q Consensus 431 dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~---~~~~~i~~~k~y~~~~f~edLk------------- 494 (567)
.++..+.+..+.+....+++||.|++|+||+++++..+.... ..++.++.+.- ........|-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~g~~~~~~~g~~~~ 91 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL-NENLLDSELFGHEAGAFTGAQKR 91 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS-CHHHHHHHHHCCC---------C
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC-ChhHHHHHhcCCccccccccccc
Confidence 455555544444445568999999999999999999887764 56777776532 2221122221
Q ss_pred --HHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCC
Q psy12736 495 --SLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRG 531 (567)
Q Consensus 495 --~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~G 531 (567)
..+..+ ..-+++++|-+-......+.+. +|..|
T Consensus 92 ~~~~l~~a----~~~~l~lDEi~~l~~~~q~~Ll~~l~~~ 127 (265)
T 2bjv_A 92 HPGRFERA----DGGTLFLDELATAPMMVQEKLLRVIEYG 127 (265)
T ss_dssp CCCHHHHT----TTSEEEEESGGGSCHHHHHHHHHHHHHC
T ss_pred ccchhhhc----CCcEEEEechHhcCHHHHHHHHHHHHhC
Confidence 011112 2347778888777766666666 66654
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.009 Score=63.53 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+-+||+||||||||++++.+-+.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 4567899999999999999998877643
No 81
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.75 E-value=0.004 Score=62.35 Aligned_cols=32 Identities=38% Similarity=0.406 Sum_probs=24.9
Q ss_pred HHHHHhcCC--CeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++..+. |+|++||+|||||++++.+.+.+
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 334444444 79999999999999999887764
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.71 E-value=0.0027 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+++++||+|||||++++.+.+.+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999887653
No 83
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.70 E-value=0.01 Score=64.40 Aligned_cols=38 Identities=37% Similarity=0.420 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCCc
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDK 221 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~~ 221 (567)
..+...+..+..++++||||||||++++.++.-+++..
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 44567788999999999999999999999887776543
No 84
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.70 E-value=0.0071 Score=61.54 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
....|+||+||+|||||++++.+.+.+.
T Consensus 43 ~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 43 PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3567899999999999999999888765
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.66 E-value=0.025 Score=57.07 Aligned_cols=87 Identities=7% Similarity=0.022 Sum_probs=53.4
Q ss_pred HHHHHhcCC---CeEEeccCCCCchhhHHHHHhccCCCcceeee--------------c----CCCCCceEEEEe-e---
Q psy12736 186 LSLMNEIKR---PCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA--------------E----LPPTPAKFHYIF-N--- 240 (567)
Q Consensus 186 l~~ll~~~~---pvLl~GptGtGKT~~i~~~l~~l~~~~~~~~~--------------e----gPp~gkk~v~iF-N--- 240 (567)
+..++..++ .+|+.||+|||||++++.+.+.+. ..+..++ + .|..|++.++++ +
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-ADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-EEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCC
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcc
Confidence 444555443 457778899999999999887763 2233332 0 344455555244 2
Q ss_pred cc--ch----------------------------hhhhhccccccccccCCHHHHHHHHHHhhh
Q psy12736 241 LR--DL----------------------------SRIIQGLTATEKIIFNTKEMFVRAWRNEFT 274 (567)
Q Consensus 241 l~--D~----------------------------~R~~rg~f~~~~~~~~s~~sl~~I~~~il~ 274 (567)
+. +. .++.+ +|.++.++.|+.+....|+..++.
T Consensus 117 l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s-R~~~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 117 SGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS-RCRVITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH-HSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh-hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 11 10 05556 778888899998887776665544
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.66 E-value=0.026 Score=51.66 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc----CCeEEEEEecCCCChhhHHHHHHHHHHHhccC------CCcEEEEEecCc
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA----GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVK------NQATVFLFTAAE 515 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~------~~~~vfl~~d~q 515 (567)
+.+++|+|++|+||++|++..+... |..+..+ +..++.+.++..+...... .++-+++++|-+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF------DTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE------EHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE------EHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 4467999999999999998877654 5544443 3445555555544332211 245677777765
No 87
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.60 E-value=0.027 Score=59.87 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=54.0
Q ss_pred HHHHHHhcCC--CceEEeccCCCcHhHHHHHHHHHc-----CCeEEEEEecCCCChhhHHHHHHHHHHHhc-------cC
Q psy12736 438 RIHRALRLSR--GHCMVVGVEGGGKRSLVRLASFAA-----GYQVFTIQLSRGYNEASFKEDLKSLYNLLG-------VK 503 (567)
Q Consensus 438 ri~RvL~~p~--Gh~LLvG~~GsGr~sl~rlaa~i~-----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag-------~~ 503 (567)
.+.++...|+ .+++|.|++|+||++|++..+... +..+..+... ++..++...+.... ..
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~ 192 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKYR 192 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcccHHHHHHHhc
Confidence 3445555664 578999999999999999888766 6777776533 33444433332211 11
Q ss_pred CCcEEEEEecCcccc------hhhhHHhh-hccCC
Q psy12736 504 NQATVFLFTAAEIVE------EGYQVFTI-QLSRG 531 (567)
Q Consensus 504 ~~~~vfl~~d~qi~~------e~fle~in-lL~~G 531 (567)
.++.+++++|-+-.. +.++..+| +...|
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~ 227 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC
Confidence 256788888865433 34556655 54433
No 88
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.59 E-value=0.017 Score=59.08 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred Cc-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEecCCCChhhHHHHHHHHHHHh--
Q psy12736 448 GH-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLSRGYNEASFKEDLKSLYNLL-- 500 (567)
Q Consensus 448 Gh-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~k~y~~~~f~edLk~~~~~a-- 500 (567)
+| +|+.|++|+||+++++..+...++ +++.+.....-+..+ ++.++..+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~ 113 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVED----TRDLLDNVQY 113 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSC----HHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHH----HHHHHHHHhh
Confidence 45 589999999999999877765543 345554433233333 33344333
Q ss_pred -ccCCCcEEEEEecCcccchhhhHH
Q psy12736 501 -GVKNQATVFLFTAAEIVEEGYQVF 524 (567)
Q Consensus 501 -g~~~~~~vfl~~d~qi~~e~fle~ 524 (567)
...+++.+++++|.+-.+....+.
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~~~~~ 138 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNA 138 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHH
T ss_pred ccccCCeEEEEEECcchhcHHHHHH
Confidence 345678899999987765544333
No 89
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.57 E-value=0.01 Score=59.87 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+....+......+.|||++||||||||++++.+-...
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3444455556688999999999999999998887654
No 90
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.57 E-value=0.051 Score=54.40 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=48.0
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC----CChhhHHHHHHHHHHHhccCCCcEEEEEecCc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG----YNEASFKEDLKSLYNLLGVKNQATVFLFTAAE 515 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~----y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~q 515 (567)
.|..++||.|++|+||++++|..|...+..++.+..+.- ++.. ...++.++..|. ...|.+++++|-+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~--~~~~~~~f~~a~-~~~p~il~iDEid 118 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES--EANVREIFDKAR-QAAPCVLFFDELD 118 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC--TTHHHHHHHHHH-HTCSEEEEECSTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch--HHHHHHHHHHHH-hcCCeEEEEEChH
Confidence 455678999999999999999999999998888753210 1111 134566666663 3467888888754
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.56 E-value=0.0053 Score=58.07 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=24.9
Q ss_pred HHHHhcCC---CeEEeccCCCCchhhHHHHHhccC
Q psy12736 187 SLMNEIKR---PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 187 ~~ll~~~~---pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..++..+. +++++||+|||||++++.+.+.+.
T Consensus 36 ~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 36 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444444 699999999999999999887653
No 92
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.53 E-value=0.0048 Score=62.62 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+..+.|+||+||+|||||++++.+-+.+.
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 344588999999999999999998877654
No 93
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.037 Score=56.11 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=53.8
Q ss_pred EecHHHHHHHHHHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHHcC------CeEEEEEecCCCChhhHHHHHHHHHHH
Q psy12736 427 VLFEDAREHLTRIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFAAG------YQVFTIQLSRGYNEASFKEDLKSLYNL 499 (567)
Q Consensus 427 vlf~dai~hi~ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i~~------~~~~~i~~~k~y~~~~f~edLk~~~~~ 499 (567)
+--+++++.+. +.+... .+|+||.|++|+||+++++..+...+ ..+..+..+..-+...+++.++.....
T Consensus 40 ~g~~~~~~~l~---~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
T 1sxj_D 40 TAQDHAVTVLK---KTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL 116 (353)
T ss_dssp CSCCTTHHHHH---HHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHS
T ss_pred hCCHHHHHHHH---HHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhh
Confidence 33344444443 334443 26899999999999999988776532 356666655444555555555544332
Q ss_pred hc----------c-CCCcEEEEEecCcccchh
Q psy12736 500 LG----------V-KNQATVFLFTAAEIVEEG 520 (567)
Q Consensus 500 ag----------~-~~~~~vfl~~d~qi~~e~ 520 (567)
.. . .+.+.+++++|.+-....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~ 148 (353)
T 1sxj_D 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTAD 148 (353)
T ss_dssp CCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH
T ss_pred cccccchhhcccCCCCCceEEEEECCCccCHH
Confidence 11 1 234567788876655443
No 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.53 E-value=0.0072 Score=58.95 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|+||+|||||++++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 36689999999999999999887764
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.51 E-value=0.0087 Score=60.53 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHHhc-----CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 185 ILSLMNEI-----KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 185 ll~~ll~~-----~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..++.+ +.+++|+||+|||||.++..+...+
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554 7899999999999999998887654
No 96
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0057 Score=56.51 Aligned_cols=27 Identities=7% Similarity=0.340 Sum_probs=23.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.|+.+.++||+|+|||++++.++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999887654
No 97
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.48 E-value=0.013 Score=51.84 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHH-HHHHHHHhccCCCcEE
Q psy12736 430 EDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKED-LKSLYNLLGVKNQATV 508 (567)
Q Consensus 430 ~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~ed-Lk~~~~~ag~~~~~~v 508 (567)
..+++.+.+..+.......++||.|++|+||++++|..+..++ .++.++.+ +..++ ++..+..+. .-+
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~------~~~~~~~~~~~~~a~----~~~ 78 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV------EYLIDMPMELLQKAE----GGV 78 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST------THHHHCHHHHHHHTT----TSE
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechh------hCChHhhhhHHHhCC----CCe
Confidence 3455555555444445677899999999999999987766555 44444322 22222 344555542 235
Q ss_pred EEEecCcccchhhhHHhh-hccC
Q psy12736 509 FLFTAAEIVEEGYQVFTI-QLSR 530 (567)
Q Consensus 509 fl~~d~qi~~e~fle~in-lL~~ 530 (567)
++++|-+-........+- +|..
T Consensus 79 l~lDei~~l~~~~q~~Ll~~l~~ 101 (143)
T 3co5_A 79 LYVGDIAQYSRNIQTGITFIIGK 101 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEeChHHCCHHHHHHHHHHHHh
Confidence 667776655555444444 4443
No 98
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.026 Score=57.65 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc------CCeEEEEEecCCC----------------------ChhhHHHHHHHHH
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA------GYQVFTIQLSRGY----------------------NEASFKEDLKSLY 497 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~------~~~~~~i~~~k~y----------------------~~~~f~edLk~~~ 497 (567)
+.++++|.|++|+||+++++..+... +..++.+...... +..+..+.+...+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999877765 7778777743211 1223233333333
Q ss_pred HHhccCCCcEEEEEecCccc
Q psy12736 498 NLLGVKNQATVFLFTAAEIV 517 (567)
Q Consensus 498 ~~ag~~~~~~vfl~~d~qi~ 517 (567)
. ..+++.+++++|-+-.
T Consensus 124 ~---~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 124 R---DYGSQVVIVLDEIDAF 140 (386)
T ss_dssp H---TCCSCEEEEEETHHHH
T ss_pred h---ccCCeEEEEEcChhhh
Confidence 3 2456899999876543
No 99
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.43 E-value=0.0062 Score=57.30 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=22.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++.+.|+||+|+|||++++.++...+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3578999999999999999998877554
No 100
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.41 E-value=0.015 Score=66.16 Aligned_cols=83 Identities=13% Similarity=0.282 Sum_probs=52.8
Q ss_pred eEEecHHHHHHHHHHHHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCCCChhhHHHHH
Q psy12736 425 DLVLFEDAREHLTRIHRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRGYNEASFKEDL 493 (567)
Q Consensus 425 ~lvlf~dai~hi~ri~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~y~~~~f~edL 493 (567)
.+|=-++.++.+.. +|.. ...|+||+|++|+||+++++..|... ++.++.++....| ..+|.+.+
T Consensus 181 ~iiG~~~~i~~l~~---~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~-~G~~e~~l 256 (758)
T 3pxi_A 181 PVIGRSKEIQRVIE---VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY-RGEFEDRL 256 (758)
T ss_dssp CCCCCHHHHHHHHH---HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTH
T ss_pred CccCchHHHHHHHH---HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc-cchHHHHH
Confidence 35555666665544 3443 46799999999999999999887764 7888877763223 23566678
Q ss_pred HHHHHHhccCCCcEEEEEe
Q psy12736 494 KSLYNLLGVKNQATVFLFT 512 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~ 512 (567)
+.++..+.. +.+.+++++
T Consensus 257 ~~~~~~~~~-~~~~iLfiD 274 (758)
T 3pxi_A 257 KKVMDEIRQ-AGNIILFID 274 (758)
T ss_dssp HHHHHHHHT-CCCCEEEEC
T ss_pred HHHHHHHHh-cCCEEEEEc
Confidence 888877754 456666665
No 101
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.40 E-value=0.029 Score=60.42 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=51.2
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC---CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR---GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k---~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.+..++||.|++|+||++++|..|..++..++.++... .|- .+....++.++..|. .+.|.+++++|-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~-g~~~~~~~~~f~~A~-~~~p~iLfLDEI 306 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA-GESESNLRKAFEEAE-KNAPAIIFIDEL 306 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT-THHHHHHHHHHHHHH-HTCSEEEEEESH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc-chhHHHHHHHHHHHH-hcCCcEEEecch
Confidence 45567999999999999999999999999999987432 221 233456777887774 456788888875
No 102
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.38 E-value=0.01 Score=60.18 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++||+||+|||||++++.+.+.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 6999999999999999999877653
No 103
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.38 E-value=0.0064 Score=61.10 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.6
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++||+||+|||||++++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457789999999999999999888764
No 104
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.29 E-value=0.0058 Score=61.14 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.|+||+||+|||||++++.+.+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35579999999999999998776654
No 105
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.26 E-value=0.052 Score=53.55 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=46.7
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC--CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k--~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
..|.| ++|+|++|+||++|++..+...+...+.+.... .....+....++.++..+. ...|.++++++-
T Consensus 71 ~~~~g-vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~iDei 141 (278)
T 1iy2_A 71 RIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 141 (278)
T ss_dssp CCCCE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH-TSCSEEEEEETH
T ss_pred CCCCe-EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH-hcCCcEEehhhh
Confidence 44667 999999999999999999998887776665321 0111233455677777764 234666777665
No 106
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.22 E-value=0.012 Score=59.06 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...+++++||+|||||++++.+.+.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 448999999999999999999877653
No 107
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.20 E-value=0.0081 Score=56.72 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++.+.|+||+|+|||++++.++...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999988765
No 108
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.17 E-value=0.0078 Score=59.96 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++||+||||||||++++.+.+.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988765
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.067 Score=54.22 Aligned_cols=78 Identities=14% Similarity=0.031 Sum_probs=48.9
Q ss_pred HHHHhc-CCCceEEeccCCCcHhHHHHHHHHHc----------CCeEEEEEecCCCCh------------------hhHH
Q psy12736 440 HRALRL-SRGHCMVVGVEGGGKRSLVRLASFAA----------GYQVFTIQLSRGYNE------------------ASFK 490 (567)
Q Consensus 440 ~RvL~~-p~Gh~LLvG~~GsGr~sl~rlaa~i~----------~~~~~~i~~~k~y~~------------------~~f~ 490 (567)
.+.+.. +.++++|.|++|+||+++++.++.-. .+.++.|+.....+. .+..
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~ 116 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISL 116 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHH
Confidence 444444 55688999999999999999887765 345666653322111 1113
Q ss_pred HHHHHHHHHh-ccCCCcEEEEEecCccc
Q psy12736 491 EDLKSLYNLL-GVKNQATVFLFTAAEIV 517 (567)
Q Consensus 491 edLk~~~~~a-g~~~~~~vfl~~d~qi~ 517 (567)
+.|+..+... ...++++++++++-+..
T Consensus 117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 117 EALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 4456666553 34567888888876543
No 110
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.16 E-value=0.012 Score=60.90 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
..++..+..|..++++||+|+|||++++.++.-.++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 456778899999999999999999999998876654
No 111
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.13 E-value=0.0084 Score=56.44 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.0
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+..++.++++||+|||||++++.+...++.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 3456889999999999999999998887753
No 112
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.12 E-value=0.009 Score=64.56 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+...+..+.||||+||||||||++++.+-..+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 34445678999999999999999999886655
No 113
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.08 E-value=0.0078 Score=59.93 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+++||+||+|||||++++.+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887765
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.01 Score=60.37 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=25.4
Q ss_pred HHHHHhcC--CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIK--RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~--~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++..+ .+++|+||+|||||++++.+.+.+
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455555 569999999999999999887654
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.06 E-value=0.0087 Score=58.93 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++||+||+|||||++++.+.+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34689999999999999999887764
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.98 E-value=0.02 Score=60.78 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=32.1
Q ss_pred CCCCCccccccCcchhhHHHHHHHHHhc---CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 165 GDKSFGDILVPTTDSTKLTWILSLMNEI---KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 165 ~~~~~~~i~VpT~dtvR~~~ll~~ll~~---~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+...|.+.++-.........+ ..+... ..|++|+||+|||||++++.+.+.+
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~-~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAA-LEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHH-HHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCChhhcCCCCchHHHHHHH-HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555544432222323333 334433 4699999999999999998877654
No 117
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.97 E-value=0.011 Score=56.03 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=25.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
..+.-+.++||+|+|||++++.++..+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45778999999999999999999887654
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.96 E-value=0.014 Score=55.53 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEe
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQL 480 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~ 480 (567)
+.++++|.|++|+||+++++..+... +..+..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46688999999999999998776543 356666654
No 119
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.059 Score=54.80 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcC-CCceEEeccCCCcHhHHHHHHHHHcC-----CeEEEEEecCCCChhhHHHHHHHHHHHh-cc
Q psy12736 430 EDAREHLTRIHRALRLS-RGHCMVVGVEGGGKRSLVRLASFAAG-----YQVFTIQLSRGYNEASFKEDLKSLYNLL-GV 502 (567)
Q Consensus 430 ~dai~hi~ri~RvL~~p-~Gh~LLvG~~GsGr~sl~rlaa~i~~-----~~~~~i~~~k~y~~~~f~edLk~~~~~a-g~ 502 (567)
.++++++.. .+... -.|++|.|++|+||+++++..|.... ..+.+++.+...+..+.++.++.+.... ..
T Consensus 31 ~~~~~~L~~---~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 31 NEVITTVRK---FVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp HHHHHHHHH---HHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSS
T ss_pred HHHHHHHHH---HHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccC
Confidence 344554433 33332 24799999999999999998877632 2355666555455555555444433221 12
Q ss_pred CCCcEEEEEecCcccc
Q psy12736 503 KNQATVFLFTAAEIVE 518 (567)
Q Consensus 503 ~~~~~vfl~~d~qi~~ 518 (567)
.+..-++++++.+-..
T Consensus 108 ~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 108 SKGFKLIILDEADAMT 123 (340)
T ss_dssp SCSCEEEEETTGGGSC
T ss_pred CCCceEEEEeCCCCCC
Confidence 3346677777765443
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.94 E-value=0.016 Score=59.64 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCC--CeEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+....+..++..+. +++++||+|||||++++.+.+.+
T Consensus 31 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555555544 59999999999999999988765
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.94 E-value=0.0092 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++.++|+||+|||||++.+.+...+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3467889999999999999999887765
No 122
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.92 E-value=0.015 Score=55.13 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhc---CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 180 TKLTWILSLMNEI---KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 180 vR~~~ll~~ll~~---~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.....++.+++. +.++++.||||||||+++..+.+.+.
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445555553 22499999999999999988877654
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.011 Score=59.32 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHhcCC--CeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++..+. |++++||+|||||++++.+.+.+
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 334555554 79999999999999999987765
No 124
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.0082 Score=63.53 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+-+||+||||||||++++.+-+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999988765
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.89 E-value=0.013 Score=59.72 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHhcCCC--eEEeccCCCCchhhHHHHHhccC
Q psy12736 185 ILSLMNEIKRP--CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 185 ll~~ll~~~~p--vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+...++.|.. ++|+||+|||||++++.+.+.+.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45566667754 99999999999999999877653
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.84 E-value=0.0096 Score=60.38 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++||+||+|||||++++.+.+.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999887764
No 127
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.83 E-value=0.015 Score=59.31 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 183 TWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 183 ~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
...++..+..|..++++||+|+|||++++.++.-++
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345667788999999999999999999998877654
No 128
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.80 E-value=0.037 Score=58.83 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=46.9
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHc-CCeEEEEEecCCCCh--hhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAA-GYQVFTIQLSRGYNE--ASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~-~~~~~~i~~~k~y~~--~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
.|..++||.|++|+||+++++..|..+ +..++.+..+.-.+. .+....++.++..+. ...|.|++++|-+-
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~ 238 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEIDS 238 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH-HSCSEEEEESCTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH-HcCCeEEEEechHh
Confidence 466789999999999999999988887 788888865432110 011123455555553 35678888887653
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.79 E-value=0.019 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++|+||+|||||++++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999887654
No 130
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.79 E-value=0.061 Score=54.72 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCC-Cc-eEEeccCCCcHhHHHHHHHHHcCC------------------------eEEEEEec---CCCCh
Q psy12736 436 LTRIHRALRLSR-GH-CMVVGVEGGGKRSLVRLASFAAGY------------------------QVFTIQLS---RGYNE 486 (567)
Q Consensus 436 i~ri~RvL~~p~-Gh-~LLvG~~GsGr~sl~rlaa~i~~~------------------------~~~~i~~~---k~y~~ 486 (567)
+.++.+.++..+ +| .||.|++|+||+++++..|....+ ++..+... +..+.
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i 90 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGV 90 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCH
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCH
Confidence 445555666544 56 689999999999999877654332 35555543 34555
Q ss_pred hhHHHHHHHHHHHhc---cCCCcEEEEEecCcccch
Q psy12736 487 ASFKEDLKSLYNLLG---VKNQATVFLFTAAEIVEE 519 (567)
Q Consensus 487 ~~f~edLk~~~~~ag---~~~~~~vfl~~d~qi~~e 519 (567)
. +++.+...+. ..+..-|+++++.+-..+
T Consensus 91 ~----~ir~l~~~~~~~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 91 D----AVREVTEKLNEHARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp H----HHHHHHHHTTSCCTTSSCEEEEESCGGGBCH
T ss_pred H----HHHHHHHHHhhccccCCcEEEEECchhhcCH
Confidence 4 4455554443 356678888888776654
No 131
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.011 Score=64.09 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++||+||+|||||++++.+.+.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3799999999999999999988876
No 132
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.74 E-value=0.011 Score=60.24 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++|+||+|||||++++-+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 789999999999999999887765
No 133
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.73 E-value=0.013 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++||+||||||||++++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999887765
No 134
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.72 E-value=0.012 Score=60.77 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++||+||+|||||++++.+.+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999999999988765
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.71 E-value=0.023 Score=56.19 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++|+||+|||||++++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999887654
No 136
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.70 E-value=0.08 Score=53.46 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=39.1
Q ss_pred EEecHHHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC
Q psy12736 426 LVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR 482 (567)
Q Consensus 426 lvlf~dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k 482 (567)
++=-+++++.+... +.. ++|+||.|++|+||+++++..|...+..++.+..+.
T Consensus 29 i~g~~~~~~~l~~~---l~~-~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~ 81 (331)
T 2r44_A 29 VVGQKYMINRLLIG---ICT-GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP 81 (331)
T ss_dssp CCSCHHHHHHHHHH---HHH-TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eeCcHHHHHHHHHH---HHc-CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCC
Confidence 33344555544332 322 689999999999999999999999898888877643
No 137
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.69 E-value=0.016 Score=59.71 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.6
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+++||+||+|||||++++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999987764
No 138
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.67 E-value=0.01 Score=59.46 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.+||+||||||||++++.+.+.+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999988776
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.66 E-value=0.015 Score=55.59 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 188 LMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 188 ~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+-+..|..+.++||+|+|||++++.++..+
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 335679999999999999999999887755
No 140
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.64 E-value=0.014 Score=53.25 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.++++|++|||||++.+.+...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999887764
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.63 E-value=0.014 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.+.|+||+|+|||++++.++..++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999998887654
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.61 E-value=0.23 Score=50.38 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccchhhhHHh
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGYQVFT 525 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~e~fle~i 525 (567)
+..|++|+|++|+||++|++..|...++++....-.-.... .|+..++... . ...++++.+.+-......|.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~----~~l~~~~~~~--~-~~~v~~iDE~~~l~~~~~e~L 122 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILTSL--E-RGDVLFIDEIHRLNKAVEELL 122 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH----HHHHHHHHHC--C-TTCEEEEETGGGCCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH----HHHHHHHHHc--c-CCCEEEEcchhhcCHHHHHHH
Confidence 44789999999999999999999998887654432211222 3455544332 2 233455555544433333333
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.58 E-value=0.015 Score=52.15 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++.|+||+|||||++++.+...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887765
No 144
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.013 Score=61.83 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+-+||+||||||||++++.+-...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 45679999999999999999988765
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.41 E-value=0.014 Score=59.75 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=23.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.+++++||+|||||++++.+.+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999988765
No 146
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.40 E-value=0.1 Score=53.89 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=42.9
Q ss_pred CCceEE--eccCCCcHhHHHHHHHHHc---------CCeEEEEEecCCCChhhH----------------------HHHH
Q psy12736 447 RGHCMV--VGVEGGGKRSLVRLASFAA---------GYQVFTIQLSRGYNEASF----------------------KEDL 493 (567)
Q Consensus 447 ~Gh~LL--vG~~GsGr~sl~rlaa~i~---------~~~~~~i~~~k~y~~~~f----------------------~edL 493 (567)
.+++++ .|++|+||++|++..+... +..++.+......+..++ .+.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456778 8999999999998776543 455666664333332222 2222
Q ss_pred HHHHHHhccCCCcEEEEEecCcccc
Q psy12736 494 KSLYNLLGVKNQATVFLFTAAEIVE 518 (567)
Q Consensus 494 k~~~~~ag~~~~~~vfl~~d~qi~~ 518 (567)
...+. ..+++++++++|.|-..
T Consensus 130 ~~~l~---~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 130 VDNLY---VENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHH---HHTCEEEEEEESTHHHH
T ss_pred HHHHH---hcCCeEEEEEeCHHHHh
Confidence 22322 13578999999987653
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.38 E-value=0.02 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..+.|+||+|||||++.+.+...+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998776654
No 148
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.36 E-value=0.017 Score=59.70 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...++||+||||||||++++.+.+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999887766
No 149
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.34 E-value=0.022 Score=60.69 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+++||+||||||||++++.+-+.+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 5799999999999999998887764
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.31 E-value=0.14 Score=51.40 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCc-eEEeccCCCcHhHHHHHHHHHc------CCeEEEEEecC-CCChhhHHHHHHHHHHHh---ccCCCc
Q psy12736 438 RIHRALRLSRGH-CMVVGVEGGGKRSLVRLASFAA------GYQVFTIQLSR-GYNEASFKEDLKSLYNLL---GVKNQA 506 (567)
Q Consensus 438 ri~RvL~~p~Gh-~LLvG~~GsGr~sl~rlaa~i~------~~~~~~i~~~k-~y~~~~f~edLk~~~~~a---g~~~~~ 506 (567)
++.+.+...++| .||.|++|+||+++++..|.-+ ..++..++.+. ..+..+ ++.+...+ ...+..
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~----ir~li~~~~~~p~~~~~ 83 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD----IRTIKDFLNYSPELYTR 83 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH----HHHHHHHHTSCCSSSSS
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH----HHHHHHHHhhccccCCc
Confidence 455667766654 5899999999999998877642 34677776553 456544 44444444 334556
Q ss_pred EEEEEecCcccch
Q psy12736 507 TVFLFTAAEIVEE 519 (567)
Q Consensus 507 ~vfl~~d~qi~~e 519 (567)
-|+++++.+-...
T Consensus 84 kvviIdead~lt~ 96 (305)
T 2gno_A 84 KYVIVHDCERMTQ 96 (305)
T ss_dssp EEEEETTGGGBCH
T ss_pred eEEEeccHHHhCH
Confidence 6777777665543
No 151
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.30 E-value=0.02 Score=53.47 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=23.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.-+.|+||+|||||++++.+...+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457789999999999999998887766
No 152
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.28 E-value=0.036 Score=54.70 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHhcC----CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 178 DSTKLTWILSLMNEIK----RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 178 dtvR~~~ll~~ll~~~----~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
|-+.....+..+++.. ..++|+||||||||.++..+.+..
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4455666677788754 259999999999999999887753
No 153
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.23 E-value=0.013 Score=54.17 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|..+.++||+|||||++++.+...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45778999999999999999887654
No 154
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.23 E-value=0.017 Score=53.06 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++++|++|||||++.+.+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999887765
No 155
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.16 E-value=0.02 Score=54.82 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+..|..+.|+||+|+|||++++.++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456788999999999999999999877665
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.15 E-value=0.02 Score=53.36 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=23.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..|.-+.|+||+|||||++++.+...++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577889999999999999998776653
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.12 E-value=0.031 Score=61.86 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCCC
Q psy12736 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPD 220 (567)
Q Consensus 182 ~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~~ 220 (567)
...-+...+..+.+++|+||+|||||++++.+...++..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 335677778899999999999999999999988876544
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.07 E-value=0.016 Score=57.86 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+++|+||+|||||++++.+...+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 5899999999999999998877653
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.07 E-value=0.026 Score=52.05 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=24.2
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++..+..+.++|++|||||++.+.+.+.+
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45567789999999999999998877655
No 160
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.05 E-value=0.17 Score=50.70 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHH--------------
Q psy12736 431 DAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDL-------------- 493 (567)
Q Consensus 431 dai~hi~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edL-------------- 493 (567)
.++..+.+..+.......++||.|++|+||+.++|..+..+ +..++.++.+.- ....+...|
T Consensus 9 ~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~-~~~l~~~~lfg~~~g~~tg~~~~ 87 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL-NESLLESELFGHEKGAFTGADKR 87 (304)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC-CHHHHHHHHTCCCSSCCC---CC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC-ChHHHHHHhcCccccccCchhhh
Confidence 45555555555555667899999999999999999888765 456777765531 111111111
Q ss_pred -HHHHHHhccCCCcEEEEEecCcccchhhhHHhh-hccCCc
Q psy12736 494 -KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTI-QLSRGY 532 (567)
Q Consensus 494 -k~~~~~ag~~~~~~vfl~~d~qi~~e~fle~in-lL~~Ge 532 (567)
...+..|. .-+++++|-+-........+- +|..++
T Consensus 88 ~~g~~~~a~----~g~L~LDEi~~l~~~~q~~Ll~~l~~~~ 124 (304)
T 1ojl_A 88 REGRFVEAD----GGTLFLDEIGDISPLMQVRLLRAIQERE 124 (304)
T ss_dssp CCCHHHHHT----TSEEEEESCTTCCHHHHHHHHHHHHSSB
T ss_pred hcCHHHhcC----CCEEEEeccccCCHHHHHHHHHHHhcCE
Confidence 11222221 235677887766666655555 666654
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.04 E-value=0.18 Score=51.58 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=29.7
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHc-----------CCeEEEEEecC
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAA-----------GYQVFTIQLSR 482 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~-----------~~~~~~i~~~k 482 (567)
.++++|.|++|+||+++++..+... +..++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 4578999999999999998887765 78888887554
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.02 E-value=0.031 Score=60.28 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++||+||+|||||++++.+.+.+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 163
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.02 E-value=0.023 Score=60.92 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+||+||||||||++++.+...+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999887664
No 164
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.99 E-value=0.021 Score=51.33 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-++++||+|||||++.+.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999887 543
No 165
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.98 E-value=0.023 Score=51.98 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++.++++|++|||||++.+.+-..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999877665
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.96 E-value=0.022 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++|+||+|||||++++.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3459999999999999999887654
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.94 E-value=0.075 Score=47.47 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=44.0
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHc---CCeEEEEEecCCCChhhHHHHHHHHHHHhccCCCcEEEEEecCcccc----
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVE---- 518 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi~~---- 518 (567)
++..+.|+|++|+||++|++..+... |.....+....-... + ...++-+++++|-+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-~-------------~~~~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-D-------------AAFEAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-G-------------GGGGCSEEEEESTTCCCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-H-------------HHhCCCEEEEeCccccChHHH
Confidence 56678999999999999999988765 655655543321111 0 11235566677655433
Q ss_pred hhhhHHhh-hccCC
Q psy12736 519 EGYQVFTI-QLSRG 531 (567)
Q Consensus 519 e~fle~in-lL~~G 531 (567)
+.+++.+| +...|
T Consensus 101 ~~l~~li~~~~~~g 114 (149)
T 2kjq_A 101 ALLFSIFNRFRNSG 114 (149)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 34555566 55444
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.94 E-value=0.021 Score=59.41 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+++||+||+|||||++++.+.+.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999887664
No 169
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.88 E-value=0.022 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-++++|++|||||++.+.+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887665
No 170
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.87 E-value=0.021 Score=55.77 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecCC---C-ChhhHHHHHHHHHHHhccCCCcEEEEEecCcc
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRG---Y-NEASFKEDLKSLYNLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~---y-~~~~f~edLk~~~~~ag~~~~~~vfl~~d~qi 516 (567)
..++||.|++|+||+++++..|...+..++.+..+.- | +... ..++.++..+. ...+.+++++|-+-
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~a~-~~~~~vl~iDEid~ 114 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA--SRVRDLFETAK-KQAPSIIFIDEIDA 114 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCS--SSSSTTHHHHH-HSCSCEEEESCGGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHH--HHHHHHHHHHH-hcCCeEEEEeChhh
Confidence 3458999999999999999999888887777654321 1 1000 11233333332 23567888887643
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.85 E-value=0.044 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.4
Q ss_pred CeEEeccCCCCchhhHHHHHhccCC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+++++||+|||||++++.+.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999887653
No 172
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.72 E-value=0.028 Score=57.99 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-+.+...+.-++++||+|||||++++.++..++
T Consensus 116 ~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 116 KRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 344455666899999999999999999887654
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.035 Score=55.42 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHhcCC--CeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKR--PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~--pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++.+++ +++++||+|||||++++.+.+.+
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 344455543 59999999999999999887764
No 174
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.71 E-value=0.021 Score=56.21 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.1
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..|.-+.++||+|||||++++.++.-++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 66788999999999999999998877543
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.68 E-value=0.037 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+++||+||+|||||++++.+....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999887654
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.67 E-value=0.026 Score=57.74 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.+++++||+|||||++++.+.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988765
No 177
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.61 E-value=0.22 Score=49.93 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEe
Q psy12736 438 RIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQL 480 (567)
Q Consensus 438 ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~ 480 (567)
++.+.+.. ++.+++.|+.|+||++|++-.+.-.+ .+.+..
T Consensus 23 ~L~~~l~~-~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 23 KLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp HHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred HHHHHHhc-CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 33344443 37889999999999999987776554 444544
No 178
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.60 E-value=0.028 Score=50.98 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.6
Q ss_pred CeEEeccCCCCchhhHHHHHh
Q psy12736 195 PCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~ 215 (567)
-++++|++|||||++++.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999988776
No 179
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.56 E-value=0.026 Score=56.37 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.-++++||+|||||++++.+...++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999987653
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.52 E-value=0.14 Score=49.97 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=39.4
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEEEec--------------------------------C-CCChhhHHHHHHHH
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS--------------------------------R-GYNEASFKEDLKSL 496 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~--------------------------------k-~y~~~~f~edLk~~ 496 (567)
++++|++||||+++++..|--.++.++..... . .|+..+|.+..+.+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 83 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIFE 83 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHHH
Confidence 57999999999999997666667776654210 0 46777888888888
Q ss_pred HHHhccCCCcE
Q psy12736 497 YNLLGVKNQAT 507 (567)
Q Consensus 497 ~~~ag~~~~~~ 507 (567)
+ .+-..++.+
T Consensus 84 i-~~~~~g~~v 93 (253)
T 2ze6_A 84 V-DWRKSEEGL 93 (253)
T ss_dssp H-HTTTTSSEE
T ss_pred H-HHHhCCCCe
Confidence 7 543344443
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.51 E-value=0.027 Score=51.63 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..++++|++|||||++++.+...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988876653
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.50 E-value=0.037 Score=58.41 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHH-hcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 185 ILSLMN-EIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 185 ll~~ll-~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
+++.++ ..+.-++++||+|||||++++.++..+++
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 333333 34567899999999999999999887654
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.41 E-value=0.031 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++||+|+|||++++.+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998877654
No 184
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.40 E-value=0.028 Score=58.35 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.8
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+..+..++++||+|||||++++.++..++
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356788899999999999999999887654
No 185
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.38 E-value=0.039 Score=56.45 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++++||+|||||++++.+.+.+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999998877654
No 186
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.37 E-value=0.035 Score=52.27 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-+..|.-+.|+||+|+|||++++.+..-++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356788999999999999999988776553
No 187
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.36 E-value=0.022 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-++++|++|||||++++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999998877655
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.29 E-value=0.02 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHH
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l 214 (567)
.|.-+.++||+|||||++++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 46678999999999999999743
No 189
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.22 E-value=0.16 Score=51.51 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=51.4
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEE--------------------------------ecCCCChhhHHHHHHHH
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ--------------------------------LSRGYNEASFKEDLKSL 496 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~--------------------------------~~k~y~~~~f~edLk~~ 496 (567)
.++|+|++||||+++++..|.-.+..++... +...|+..+|+++.+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~ 86 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAA 86 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHH
Confidence 4689999999999999887777777776652 12567888999999888
Q ss_pred HHHhccCCCcEEEEEecCcccchhh
Q psy12736 497 YNLLGVKNQATVFLFTAAEIVEEGY 521 (567)
Q Consensus 497 ~~~ag~~~~~~vfl~~d~qi~~e~f 521 (567)
+...-..+ .+++++-.+.+--.+.
T Consensus 87 i~~i~~~g-~~~IlvGGt~~y~~al 110 (323)
T 3crm_A 87 MAKATARG-RIPLLVGGTMLYYKAL 110 (323)
T ss_dssp HHHHHHTT-CEEEEEESCHHHHHHH
T ss_pred HHHHHHcC-CeEEEECCchhhHHHH
Confidence 87765444 4556666655433333
No 190
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.21 E-value=0.04 Score=55.49 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++..+..++++||+|+|||++++.+++..
T Consensus 25 ~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 25 EESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 3345557899999999999999999998764
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.15 E-value=0.034 Score=51.96 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 188 LMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 188 ~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.....+.-+.++||+|||||++.+.+...+
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567889999999999999998887665
No 192
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.12 E-value=0.025 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..++++|++|||||++.+.+.+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999998877654
No 193
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.06 E-value=0.035 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=20.8
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
+..|+.++++||||||||+.+...+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4468899999999999998776654
No 194
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.05 E-value=0.11 Score=55.15 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS 481 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~ 481 (567)
+.+|+||.|++|+||++++|..|...+..++.+..+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 568899999999999999999999999999998754
No 195
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.04 E-value=0.036 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.|+||+|||||++++.+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46779999999999999998876654
No 196
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.04 E-value=0.43 Score=47.84 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec
Q psy12736 436 LTRIHRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS 481 (567)
Q Consensus 436 i~ri~RvL~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~ 481 (567)
+.++.+ +.. +.+++.|++|+||++|++-.+.-.+.....+...
T Consensus 22 l~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 22 IEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp HHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred HHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 334555 544 6899999999999999987776655555566654
No 197
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.00 E-value=0.042 Score=61.29 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=22.7
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.++-..|+.||||||||.++...+..+
T Consensus 201 al~~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 201 ALSQKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhcCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34445578999999999999998877654
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.99 E-value=0.12 Score=56.44 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEec
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLS 481 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~ 481 (567)
++.+++|+|++|+||++++|..|...+..+..+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 566899999999999999999999999888888654
No 199
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.98 E-value=0.04 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.+..++|+|++|||||++.+.+-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999999999877665
No 200
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.97 E-value=0.11 Score=59.54 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=51.4
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHHcCCeEEEEEecC--CCChhhHHHHHHHHHHHhccCCCcEEEEEecC
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSR--GYNEASFKEDLKSLYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k--~y~~~~f~edLk~~~~~ag~~~~~~vfl~~d~ 514 (567)
.|..++||+|++||||++++|..|...+..++.+.... .....++...++.++..+. .+.|.+++++|-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEi 306 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE-KNAPAIIFIDEL 306 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH-HHCSEEEEEESG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH-hcCCcEEEeccH
Confidence 35567999999999999999999999999888886432 1122455677888888774 346777777764
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.96 E-value=0.036 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.8
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++++|++|||||++++.+.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998877653
No 202
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.94 E-value=0.038 Score=54.02 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.7
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-++++||+|||||++.+.+...+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999877654
No 203
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.92 E-value=0.041 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=23.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++-++++||||+|||+++..+.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 477899999999999999999887653
No 204
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.92 E-value=0.11 Score=55.91 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCCceEEeccCCCcHhHHHHHHHHHcCC
Q psy12736 446 SRGHCMVVGVEGGGKRSLVRLASFAAGY 473 (567)
Q Consensus 446 p~Gh~LLvG~~GsGr~sl~rlaa~i~~~ 473 (567)
.++|+||.|++|+||+++++..|...+.
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 4789999999999999999988877643
No 205
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.89 E-value=0.032 Score=53.38 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=17.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHH-hcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFL-RSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l-~~l 217 (567)
..|.-+.|+||+|||||++++.+. ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467889999999999999998887 554
No 206
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.88 E-value=0.038 Score=51.58 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..-++|+|++|||||++++.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999877665
No 207
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.82 E-value=0.055 Score=47.93 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|+|||++++.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 208
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.76 E-value=0.047 Score=49.69 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.7
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++++|++|||||++.+.+-..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 369999999999999998877655
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.75 E-value=0.12 Score=48.22 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=27.1
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
+-.++|+|++||||+|+++..|-..++.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34789999999999999999888888877654
No 210
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.75 E-value=0.036 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.|+||+|||||++.+.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5578999999999999998876543
No 211
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.73 E-value=0.042 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..+.|+|++|||||++++.+-+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999887765
No 212
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.70 E-value=0.026 Score=62.38 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
||||+||||||||++++.+-+.++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 999999999999999988766554
No 213
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.67 E-value=0.079 Score=57.15 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.++|+||+|||||++++.+.....
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999998776543
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.66 E-value=0.047 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.2
Q ss_pred CCeEEeccCCCCchhhHHHHHh
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~ 215 (567)
.-+.++||+|+|||++++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998865
No 215
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.60 E-value=0.14 Score=51.66 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.0
Q ss_pred hcCCCceEEeccCCCcHhHHHHHHHHHcC
Q psy12736 444 RLSRGHCMVVGVEGGGKRSLVRLASFAAG 472 (567)
Q Consensus 444 ~~p~Gh~LLvG~~GsGr~sl~rlaa~i~~ 472 (567)
....||+||.|++|+||++++|..+...+
T Consensus 42 ~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 42 DPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999999999999999998888765
No 216
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.60 E-value=0.054 Score=57.45 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..++||+||||||||++++.+-..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999998877653
No 217
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.60 E-value=0.05 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.4
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|+|||++++++....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.57 E-value=0.039 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.9
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
+..|.-+.++||+|+|||++++.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999998874
No 219
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.56 E-value=0.046 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|++++||+|||||++++.+.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999888754
No 220
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.52 E-value=0.065 Score=47.49 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.51 E-value=0.043 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=22.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.++|+||||||||++...+.+.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 34689999999999999999988875
No 222
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.48 E-value=0.057 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.....|+++|++|+|||++++.++..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999875
No 223
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.45 E-value=0.069 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++++.|++|||||+++..++..+.
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44999999999999999998877653
No 224
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.43 E-value=0.055 Score=51.31 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
....++++|++|||||++.+.+...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999998877653
No 225
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.41 E-value=0.069 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|+|||++++.++..-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 226
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.40 E-value=0.052 Score=54.75 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=26.0
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.-+..|.-+.|+||+|||||++++-++.-+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3445689999999999999999999877654
No 227
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.40 E-value=0.069 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 228
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.40 E-value=0.049 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 229
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.37 E-value=0.05 Score=50.27 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++|++|||||++.+.+.+.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999998877654
No 230
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.30 E-value=0.07 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3578999999999999999998754
No 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.26 E-value=0.07 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.-+.++|++|+|||++++.+......
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 35789999999999999998876443
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.26 E-value=0.055 Score=51.55 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++++|++|||||++++.+...+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999998887665
No 233
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.25 E-value=0.056 Score=50.91 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++|+||+|||||++.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887765
No 234
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.25 E-value=0.056 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..++++|++|||||++.+.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999998877665
No 235
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.23 E-value=0.075 Score=47.25 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 236
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.21 E-value=0.074 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|+|||++++.++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 237
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.17 E-value=0.076 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 238
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.17 E-value=0.071 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.16 E-value=0.061 Score=48.71 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.0
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..|.-+.|+||.|+|||++++-+..-++
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36777899999999999999999887663
No 240
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.13 E-value=0.09 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCCeEE--eccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIV--VGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl--~GptGtGKT~~i~~~l~~l 217 (567)
..++++ +||+|+|||++++.+.+.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 457888 9999999999999988765
No 241
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.09 E-value=0.059 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.-++++|++|||||++.+.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999998876654
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.08 E-value=0.055 Score=51.23 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.|+||+|||||++.+.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999998776543
No 243
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.08 E-value=0.056 Score=50.90 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++||+|||||++.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998877765
No 244
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.06 E-value=0.18 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.9
Q ss_pred CceEEeccCCCcHhHHHHHHHH
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASF 469 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~ 469 (567)
.|++|.|++|+||+++++..+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998777
No 245
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.04 E-value=0.057 Score=50.54 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=22.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.+.-+.++|++|||||++++.+.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356779999999999999999887665
No 246
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.04 E-value=0.075 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 247
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.02 E-value=0.057 Score=58.92 Aligned_cols=63 Identities=10% Similarity=-0.050 Sum_probs=39.8
Q ss_pred hhhhccccccccccCCHHHHHHHHHHhhhhhh------cC-h----HHHHHHHHHhCCCCCCccccccChhhHHHHHhhh
Q psy12736 246 RIIQGLTATEKIIFNTKEMFVRAWRNEFTRTI------CD-R----LNTDELVIAELPPTPAKFHYIFNLRDLSRIIQGL 314 (567)
Q Consensus 246 R~~rg~f~~~~~~~~s~~sl~~I~~~il~~~~------~~-~----i~~y~~i~~~llptp~k~HY~FnlRDlsrv~qGi 314 (567)
.|.+ +|.++.++.|+.+....|+...+.+.. .. . -+....+.... .+-.|.|+|.+.++.+
T Consensus 240 aL~~-R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~-------~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 240 PLRD-RMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY-------TREAGVRSLERQLAAI 311 (543)
T ss_dssp HHHH-HEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH-------CCCSSSHHHHHHHHHH
T ss_pred HHHh-hcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC-------ChhhchhHHHHHHHHH
Confidence 5566 778889999999999999887664211 00 1 23333333321 1226889998888876
Q ss_pred hc
Q psy12736 315 TA 316 (567)
Q Consensus 315 ~~ 316 (567)
+.
T Consensus 312 ~~ 313 (543)
T 3m6a_A 312 CR 313 (543)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 248
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.97 E-value=0.054 Score=50.50 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.-++++|++|||||++++.+...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999998877664
No 249
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.86 E-value=0.068 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++++|++|+|||++++.++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998764
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.81 E-value=0.053 Score=51.17 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.3
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-++++||+|+|||++++.+....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999988654
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.81 E-value=0.058 Score=52.14 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|.-+-++||+|||||++++-+..-+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 58889999999999999998665433
No 252
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.81 E-value=0.077 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|||||++.+.+-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999998876654
No 253
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.80 E-value=0.058 Score=52.56 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 187 ~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+...+.-+-|+||+|||||++.+.+.+.+
T Consensus 21 ~~m~~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 21 PHMTAIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp --CTTTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3333567789999999999999998877654
No 254
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.80 E-value=0.09 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998753
No 255
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.80 E-value=0.068 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=16.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.-++++|++|||||++.+.+-..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999998876654
No 256
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.80 E-value=0.062 Score=48.45 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+-++++|+|++|||||++.+.+-..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999998776654
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.78 E-value=0.063 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++.++++||||||||++...+...++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34577899999999999999988775
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.76 E-value=0.051 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+..++++|++|||||++.+.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34589999999999999998877653
No 259
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.76 E-value=0.064 Score=50.14 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++|++|||||++++.+-+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46679999999999999998877654
No 260
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.72 E-value=0.072 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++++|++|||||++.+.+-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.71 E-value=0.066 Score=50.34 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++||+|||||++++.+...+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46678899999999999998876654
No 262
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.71 E-value=0.07 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.....|+++|++|+|||++++.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667999999999999999999864
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.70 E-value=0.067 Score=51.70 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...-+.++||+|||||++++.+.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999887654
No 264
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.69 E-value=0.06 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.8
Q ss_pred CeEEeccCCCCchhhHHHHHhccCC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
.+.++||+|+|||++++.++....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999998875543
No 265
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.69 E-value=0.092 Score=47.00 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 266
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.68 E-value=0.069 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.++|++|||||++++.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999998877653
No 267
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.68 E-value=0.072 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|||||++.+.+.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999998887765
No 268
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.67 E-value=0.092 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 269
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.66 E-value=0.093 Score=46.43 Aligned_cols=24 Identities=13% Similarity=0.454 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 270
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.074 Score=48.65 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++.++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998875
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.62 E-value=0.05 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-+.++||+|+|||++++.+....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999987643
No 272
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.61 E-value=0.072 Score=48.56 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4569999999999999999998753
No 273
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.61 E-value=0.068 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998764
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.60 E-value=0.069 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++|++|||||++.+.+-..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348899999999999998876654
No 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.59 E-value=0.069 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.-+.++|++|+|||++++.++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4578999999999999999987653
No 276
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.57 E-value=0.072 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+-++++|++|||||++.+.+...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999998876654
No 277
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.57 E-value=0.059 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++.++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999865
No 278
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.56 E-value=0.073 Score=48.73 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++.++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999865
No 279
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.54 E-value=0.09 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+.++|++|+|||++++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999988754
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.50 E-value=0.13 Score=48.71 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 183 TWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 183 ~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..+++- +..|.-+.++||+|+|||++++-+..-
T Consensus 13 ~~~l~~-i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 13 KHYVDA-IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHH-HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHh-ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344554 377889999999999999999876543
No 281
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.50 E-value=0.078 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999876
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.49 E-value=0.065 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.++|++|+|||++++.+...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998763
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.48 E-value=0.089 Score=49.07 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
|..+.++||+|+|||++++.+...+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 45688999999999999998766543
No 284
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.47 E-value=0.099 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.41 E-value=0.12 Score=50.05 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred cCcchhhHHHHHHHHHh---cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 175 PTTDSTKLTWILSLMNE---IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 175 pT~dtvR~~~ll~~ll~---~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
|..+......+...+.. ....++++||+|||||++++.+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 8 NFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp -CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
No 286
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.37 E-value=0.1 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 287
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.37 E-value=0.081 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++++||||||||++...+.+.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999888764
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.34 E-value=0.069 Score=51.40 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..|.-+.++||+|+|||++++-+..-++
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3688899999999999999987765443
No 289
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.32 E-value=0.083 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||++++.++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 290
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.31 E-value=0.077 Score=47.53 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..+.++|++|+|||++++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999998764
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.31 E-value=0.084 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.2
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.++++||||||||++...+.+.++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 477899999999999999988765
No 292
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.31 E-value=0.11 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
No 293
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.27 E-value=0.16 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+|++||+|||||++++.+.+.+.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHHHHh
Confidence 89999999999999999887654
No 294
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.22 E-value=0.084 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.3
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 358889999999999999998765443
No 295
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.22 E-value=0.11 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 296
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.22 E-value=0.34 Score=48.79 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=47.8
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEE--------------------------------EecCCCChhhHHHHHHHHH
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTI--------------------------------QLSRGYNEASFKEDLKSLY 497 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i--------------------------------~~~k~y~~~~f~edLk~~~ 497 (567)
++++|++||||++|++-.|.-.+.+++.. ++...|+..+|.++-++++
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~i 92 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEM 92 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHHH
Confidence 47899999999999887766666555442 2345689999999999888
Q ss_pred HHhccCCCcEEEEEecCcc
Q psy12736 498 NLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 498 ~~ag~~~~~~vfl~~d~qi 516 (567)
...-..++ +++++-.+.+
T Consensus 93 ~~i~~~g~-~pilVGGTgl 110 (316)
T 3foz_A 93 ADITAAGR-IPLLVGGTML 110 (316)
T ss_dssp HHHHHTTC-EEEEEESCHH
T ss_pred HHHHhCCC-cEEEEcCcHH
Confidence 87654444 5566666654
No 297
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.20 E-value=0.087 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.|+|++|||||++.+.+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999998877655
No 298
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.18 E-value=0.11 Score=47.39 Aligned_cols=24 Identities=8% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998763
No 299
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.17 E-value=0.081 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.5
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||++++.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998753
No 300
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.16 E-value=0.093 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.+...-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 468999999999999999988653
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.16 E-value=0.07 Score=49.00 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+..+.++|++|||||++++.+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999877665
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.15 E-value=0.053 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHh
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
....|+++|++|+|||++++.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999988764
No 303
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.12 E-value=0.11 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 304
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.10 E-value=0.08 Score=48.07 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=20.0
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|+++|++|+|||++++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998865
No 305
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.09 E-value=0.076 Score=49.79 Aligned_cols=25 Identities=16% Similarity=-0.033 Sum_probs=22.3
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..|.-++++||+|+|||+++..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999887
No 306
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.08 E-value=0.11 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||+++++++...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 307
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.05 E-value=0.12 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 308
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.04 E-value=0.11 Score=46.73 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||++++.++..-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998753
No 309
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.04 E-value=0.077 Score=50.86 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=21.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.-+.++||+|+|||++++-+..-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35788899999999999999866543
No 310
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.02 E-value=0.11 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||+++++++...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999998764
No 311
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.01 E-value=0.094 Score=47.18 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||+++++++..-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 312
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.99 E-value=0.071 Score=48.46 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.9
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.....|+++|++|+|||+++++++..-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999988654
No 313
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.98 E-value=0.076 Score=48.09 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.+..|.++|++|+|||++++.+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.98 E-value=0.071 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.+...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 46899999999999999988643
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.98 E-value=0.087 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.9
Q ss_pred CeEEeccCCCCchhhHHHHHhccC
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-+.++|++|||||+++..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 367999999999999999988764
No 316
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.94 E-value=0.081 Score=51.55 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 358889999999999999998765543
No 317
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.12 Score=47.00 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+....|+++|++|+|||++++.++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999854
No 318
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.85 E-value=0.35 Score=44.71 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=24.8
Q ss_pred CceEEeccCCCcHhHHHHHHHHHc---CCeEEEEE
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAA---GYQVFTIQ 479 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~---~~~~~~i~ 479 (567)
.+++|.|++|+||+++++..+... +..+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 689999999999999998766544 45555554
No 319
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.82 E-value=0.12 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 320
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.81 E-value=0.096 Score=47.59 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.++|++|+|||++++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 321
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.81 E-value=0.1 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 322
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.79 E-value=0.096 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..++++|++|||||++.+.+-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999998877665
No 323
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.78 E-value=0.12 Score=48.72 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..+.++|++|+|||+++.+++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998753
No 324
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.77 E-value=0.13 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 325
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.77 E-value=0.075 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 358889999999999999998766543
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.76 E-value=0.093 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.4
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++|++|||||++++.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999877665
No 327
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.74 E-value=0.13 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 328
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.73 E-value=0.081 Score=50.43 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=23.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|.-++++||+|+|||+++..+...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346788999999999999999998875
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.73 E-value=0.088 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+-++||+|||||++++.+...+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999998776644
No 330
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.73 E-value=0.13 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3569999999999999999998653
No 331
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.68 E-value=0.13 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||+++++++..-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3469999999999999999998753
No 332
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.67 E-value=0.079 Score=50.59 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=23.9
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-++++||+|+|||+++.+++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999998887653
No 333
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.66 E-value=0.089 Score=51.54 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.3
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 358888999999999999998765543
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.65 E-value=0.08 Score=51.39 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 358889999999999999998766543
No 335
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.64 E-value=0.13 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 336
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.60 E-value=0.14 Score=46.80 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||+++++++..-
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998653
No 337
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.60 E-value=0.14 Score=46.90 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||++++.++..-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 35579999999999999999998753
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.59 E-value=0.098 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-+.++|++|||||++.+.+-+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999998877655
No 339
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.57 E-value=0.13 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 340
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.56 E-value=0.16 Score=51.25 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=31.6
Q ss_pred cchhhHHHHHHHHHhc----------------CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 177 TDSTKLTWILSLMNEI----------------KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 177 ~dtvR~~~ll~~ll~~----------------~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.+....+..++.. |+-|+++|++|+|||+++..++.+
T Consensus 112 ~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 112 IATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4445555556666665 889999999999999999999885
No 341
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.55 E-value=0.14 Score=46.89 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 342
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.54 E-value=0.13 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 343
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.54 E-value=0.097 Score=49.32 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.1
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|||||++++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887765
No 344
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.52 E-value=0.082 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=21.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++|++|||||++++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35568899999999999998776654
No 345
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.50 E-value=0.084 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=20.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.50 E-value=0.092 Score=49.41 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=23.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.-++++|++|||||++++.+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999999877655
No 347
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.48 E-value=0.14 Score=46.18 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||+++++++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 348
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.47 E-value=0.053 Score=50.78 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.2
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+.++|++|||||++++.+...+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999998877664
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.47 E-value=0.087 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..-++++|++|||||++++.+-..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999877654
No 350
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.46 E-value=0.1 Score=49.97 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....++++|++|||||++.+.+-..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999998877665
No 351
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.46 E-value=0.14 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.44 E-value=0.1 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
+.++|++|||||++.+.+-..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 353
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.43 E-value=0.14 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 354
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.40 E-value=0.14 Score=47.87 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||++++.+...-
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 355
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.37 E-value=0.099 Score=51.68 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.|+||+|+|||++++-+..-+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 358889999999999999998765543
No 356
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.37 E-value=0.14 Score=47.29 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988753
No 357
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.34 E-value=0.1 Score=51.37 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=22.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+-++||+|+|||++++-+..-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357788999999999999998765443
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.33 E-value=0.097 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|.-+.++||+|+|||++++-+..-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57888999999999999998765543
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.32 E-value=0.15 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998754
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.32 E-value=0.095 Score=47.78 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=0.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..+..+.++|++|||||++.+.+-..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
No 361
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.14 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4579999999999999999998753
No 362
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.31 E-value=0.097 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 358888999999999999998765543
No 363
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.29 E-value=0.13 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.-|+++|.+|+|||+++.+++..-
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 364
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.29 E-value=0.15 Score=46.72 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 365
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.28 E-value=0.052 Score=50.57 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=21.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.+..+.++|++|+|||++++.++..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4667999999999999999887643
No 366
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.26 E-value=0.1 Score=48.00 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=22.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.++-||++|++|+|||+++..++.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5788999999999999999999875
No 367
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.25 E-value=0.11 Score=47.67 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=21.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999998865
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.22 E-value=0.071 Score=53.76 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+-++||+|+|||++++-++.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 468899999999999999997766544
No 369
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.16 E-value=0.1 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+-++||+|+|||++++-+..-+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 358888999999999999998765543
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.16 E-value=0.12 Score=53.62 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.|++++||+|+|||++++.++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 371
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.12 E-value=0.13 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.11 E-value=0.11 Score=49.43 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.++++|++|||||++++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999998877655
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.09 E-value=0.1 Score=50.97 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 358889999999999999998766544
No 374
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.08 E-value=0.12 Score=48.91 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
+++.|||||||++..+.+.+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999998877654
No 375
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.05 E-value=0.13 Score=47.56 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998753
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.03 E-value=0.13 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-+.++||||||||++...+...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3588999999999999999887764
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.99 E-value=0.12 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3568999999999999999998753
No 378
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.99 E-value=0.099 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||+++++++..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 379
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.98 E-value=0.11 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.-+.++||+|+|||++++-+..-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35888999999999999999876553
No 380
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.97 E-value=0.16 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.3
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||+++++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 381
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.93 E-value=0.12 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||+++++++..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999865
No 382
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.91 E-value=0.12 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.6
Q ss_pred CeEEeccCCCCchhhHHHHHh
Q psy12736 195 PCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~ 215 (567)
.+.|+||+|||||++.+.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877643
No 383
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.89 E-value=0.11 Score=51.11 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=22.1
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 358889999999999999998765433
No 384
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.89 E-value=0.12 Score=49.27 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+-+++.|||||||++..+.+.+++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999998877654
No 385
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.89 E-value=0.12 Score=53.59 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.0
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.-++++||+|||||++++.+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578889999999999999999877654
No 386
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.85 E-value=0.16 Score=46.85 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||++++.++..-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34579999999999999999998754
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.85 E-value=0.13 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=18.4
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
-.+++||+|||||+++..+.--
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999886543
No 388
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.79 E-value=0.1 Score=50.93 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+..|.-+.++||+|+|||++++-+..-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 346888999999999999999876543
No 389
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.77 E-value=0.12 Score=47.86 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=19.9
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....+.|+|++|||||++.+.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3445889999999999999776553
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.77 E-value=0.076 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhccC
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
+-+.++|++|||||++++.++.-+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3477999999999999998887654
No 391
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.77 E-value=0.11 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+.-+.++||+|||||++++.+..-+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5678899999999999999877654
No 392
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.73 E-value=0.14 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=20.4
Q ss_pred hcCCCeEEeccCCCCchhhHH-HHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMM-NFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~-~~l~~l 217 (567)
.+++++++++|||||||.... -++..+
T Consensus 36 ~~~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 36 LEGKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 357899999999999998743 344444
No 393
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.72 E-value=0.12 Score=51.40 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 358888999999999999998765543
No 394
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.72 E-value=0.18 Score=46.99 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=25.9
Q ss_pred HHHHHHHHHh----cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 182 LTWILSLMNE----IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 182 ~~~ll~~ll~----~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+.+.+.+ .+.-+.++|++|||||++++.+...+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555554 23458899999999999998876654
No 395
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.72 E-value=0.25 Score=44.94 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 447 RGHCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 447 ~Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.-+++|+|++||||+|+++..|...++.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999998888888887754
No 396
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.71 E-value=0.13 Score=54.24 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.6
Q ss_pred HHHHHHhcCCC--eEEeccCCCCchhhHHHHHhc
Q psy12736 185 ILSLMNEIKRP--CIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 185 ll~~ll~~~~p--vLl~GptGtGKT~~i~~~l~~ 216 (567)
-++.-+..|.. +.|+||+|+|||++++.++..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34555678888 999999999999999987764
No 397
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.71 E-value=0.21 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.5
Q ss_pred hcCCCeEEeccCCCCchhh-HHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTAT-MMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~-i~~~l~~l 217 (567)
.+++++++++|||+|||.. +--++..+
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999987 33445544
No 398
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.69 E-value=0.12 Score=50.69 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|.-+.++||+|+|||++++-+..-+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57888999999999999998765443
No 399
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.68 E-value=0.1 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=9.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998754
No 400
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.66 E-value=0.13 Score=47.47 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
....|+++|++|+|||++++.+..+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466899999999999999997666544
No 401
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.64 E-value=0.23 Score=48.68 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhc---CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 181 KLTWILSLMNEI---KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 181 R~~~ll~~ll~~---~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+...+++.+.+. ...|+++|++|+|||++++.++..
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 334555556653 347899999999999999999864
No 402
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.63 E-value=0.14 Score=47.60 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHh
Q psy12736 196 CIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~ 215 (567)
+.++|++|||||++.+.+..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
No 403
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.61 E-value=0.18 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.4
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 404
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.55 E-value=0.13 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.7
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.-+.++||+|+|||++++-+..-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35888999999999999999876543
No 405
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.54 E-value=0.13 Score=56.81 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=24.2
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+...+ .+..+++.|+||||||+++..++..+
T Consensus 158 i~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 158 AAVAL-TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HHHHH-TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 33334 57899999999999999998876544
No 406
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.53 E-value=0.14 Score=56.28 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 183 TWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 183 ~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...+...+ .+..++++||+|||||+++..++..+
T Consensus 195 ~~Av~~~~-~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 195 ASVLDQLA-GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHHHT-TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33444444 46889999999999999999987754
No 407
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.47 E-value=0.14 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..++++||+|+|||++++.+.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998865
No 408
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.46 E-value=0.19 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.+...-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4579999999999999999998754
No 409
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.46 E-value=0.16 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.7
Q ss_pred hcCCCeEEeccCCCCchhhHH
Q psy12736 191 EIKRPCIVVGDTGTSKTATMM 211 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~ 211 (567)
..++++++++|||+|||....
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 38 LSGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp HTTCCEEEECCSSSTTHHHHH
T ss_pred ccCCCEEEECCCCCchHHHHH
Confidence 357899999999999997554
No 410
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.42 E-value=0.13 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998864
No 411
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.41 E-value=0.47 Score=48.32 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=45.1
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEE--------------------------------Ee-cCCCChhhHHHHHHH
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTI--------------------------------QL-SRGYNEASFKEDLKS 495 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i--------------------------------~~-~k~y~~~~f~edLk~ 495 (567)
-++|+|++||||++|++..|--.+.+++.. ++ ...|+..+|+++-+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~ 121 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK 121 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence 468999999999999887776666554431 23 467888999999888
Q ss_pred HHHHhccCCCcEEEEEecC
Q psy12736 496 LYNLLGVKNQATVFLFTAA 514 (567)
Q Consensus 496 ~~~~ag~~~~~~vfl~~d~ 514 (567)
++...-..+ .++++.-.+
T Consensus 122 ~i~~i~~~g-~~pIlvGGt 139 (339)
T 3a8t_A 122 AVSEITGRR-KLPVLVGGS 139 (339)
T ss_dssp HHHHHHHTT-CEEEEECCC
T ss_pred HHHHHHhcC-CeEEEEcCH
Confidence 887653333 444554333
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.39 E-value=0.23 Score=52.08 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 183 TWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 183 ~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
...++.....+.-+-++||+|+|||++++.++.-..+
T Consensus 59 ~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 59 SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp HHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred hhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 3344444445558999999999999999988765443
No 413
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.36 E-value=1.4 Score=44.59 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=58.5
Q ss_pred HHHHHHHh------cCCCceEEeccCCCcHhHH-HHHHHHHc----CCeEEEEEecCCCChhhHHHHHHHHHHHhccCCC
Q psy12736 437 TRIHRALR------LSRGHCMVVGVEGGGKRSL-VRLASFAA----GYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQ 505 (567)
Q Consensus 437 ~ri~RvL~------~p~Gh~LLvG~~GsGr~sl-~rlaa~i~----~~~~~~i~~~k~y~~~~f~edLk~~~~~ag~~~~ 505 (567)
..+.|+|. .|+|-.++.|++|+||++| ..+++..+ +..+.-|......... -..+-|++-.
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--------ra~~lGvd~d 83 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--------YLRSMGVDPE 83 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--------HHHHTTCCGG
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--------HHHHhCCCHH
Confidence 35678888 7889668999999999999 44555443 4566667655444431 1455577655
Q ss_pred cEEEEEecCcccchhh-hHHhh-h--ccCCc--------cccCcchhHHHH
Q psy12736 506 ATVFLFTAAEIVEEGY-QVFTI-Q--LSRGY--------NEASFKEDLKSL 544 (567)
Q Consensus 506 ~~vfl~~d~qi~~e~f-le~in-l--L~~Ge--------vp~Lf~~eE~~~ 544 (567)
.+. +...+. .|.. ++.++ + +.++. |..||+.+|++.
T Consensus 84 ~ll-v~~~~~--~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg 131 (333)
T 3io5_A 84 RVI-HTPVQS--LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETED 131 (333)
T ss_dssp GEE-EEECSB--HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC-----
T ss_pred HeE-EEcCCC--HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccC
Confidence 544 344432 3455 66666 5 66665 667886555543
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.36 E-value=0.12 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++||+|+|||++++.+...+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46678899999999999999876654
No 415
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.35 E-value=0.12 Score=50.95 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.1
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-++++||+|||||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999987644
No 416
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.34 E-value=0.2 Score=48.20 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+++ +..++++||||+|||.++...+...
T Consensus 102 i~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 102 LERWLV-DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHTT-TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHh-CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 334444 4569999999999999988777654
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.34 E-value=0.76 Score=42.70 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=36.3
Q ss_pred HHHHHHh--cCCCce-EEeccCCCcHhHHHHHHHHHcCCeEEEEEecCCCChhhH
Q psy12736 438 RIHRALR--LSRGHC-MVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASF 489 (567)
Q Consensus 438 ri~RvL~--~p~Gh~-LLvG~~GsGr~sl~rlaa~i~~~~~~~i~~~k~y~~~~f 489 (567)
.+.+++. .|.|.+ +++|++|+||+++++..|...+..+.-+....+.....+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERL 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHH
Confidence 3455564 566765 899999999999988777666677777765554444433
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.32 E-value=0.13 Score=50.23 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..|.-+.++||+|+|||++++-+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3588899999999999999987654
No 419
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.32 E-value=0.19 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 420
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.28 E-value=0.14 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.1
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++.++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 421
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.27 E-value=0.19 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
....|+++|++|+|||+++++++.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 45689999999999999999998653
No 422
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.27 E-value=0.17 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++..-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.24 E-value=0.58 Score=47.21 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred eEEeccCCCcHhHHHHHHHHHcCCeEEEE--------------------------------EecCCCChhhHHHHHHHHH
Q psy12736 450 CMVVGVEGGGKRSLVRLASFAAGYQVFTI--------------------------------QLSRGYNEASFKEDLKSLY 497 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i~~~~~~~i--------------------------------~~~k~y~~~~f~edLk~~~ 497 (567)
++++|++||||++|++-.|--.+.++... ++...|+..+|.++.++++
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i 85 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI 85 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence 47899999999999876665555443321 1235689999999999998
Q ss_pred HHhccCCCcEEEEEecCcc
Q psy12736 498 NLLGVKNQATVFLFTAAEI 516 (567)
Q Consensus 498 ~~ag~~~~~~vfl~~d~qi 516 (567)
...-..|+ +++++-.+.+
T Consensus 86 ~~i~~~gk-~pIlVGGTgl 103 (322)
T 3exa_A 86 TEIHERGR-LPFLVGGTGL 103 (322)
T ss_dssp HHHHHTTC-EEEEESCCHH
T ss_pred HHHHhCCC-cEEEEcCcHH
Confidence 87754554 5566666654
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.23 E-value=0.13 Score=50.68 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=21.4
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..|.-+.++||+|+|||++++-+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3588899999999999999987654
No 425
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.21 E-value=0.2 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||++++.++..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 426
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.20 E-value=0.12 Score=47.05 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.9
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999988754
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.18 E-value=0.18 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999988653
No 428
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.13 E-value=0.24 Score=49.89 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 184 WILSLMNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 184 ~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..+..++..++++++++|||||||......+.
T Consensus 35 ~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 35 KVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp HHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 34566667778999999999999987655443
No 429
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.13 E-value=0.11 Score=47.85 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
....|+++|++|+|||+++++++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999998653
No 430
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.10 E-value=0.17 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++++...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998853
No 431
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.00 E-value=0.14 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998764
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.00 E-value=0.12 Score=47.22 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||++++.++...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999987653
No 433
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.99 E-value=0.28 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+++.||||||||+++...+..+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999998887654
No 434
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.95 E-value=0.13 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||+++++++..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 435
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.94 E-value=0.34 Score=43.49 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.1
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFT 477 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~ 477 (567)
.+.|+|++||||+|++++.|-..+..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 57899999999999999999888876554
No 436
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.92 E-value=0.14 Score=50.80 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=24.5
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..|.-++++||+|+|||++++.+...+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578889999999999999999987764
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.91 E-value=0.17 Score=50.28 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=19.7
Q ss_pred CeEEeccCCCCchhhHHHHHhcc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~l 217 (567)
-++++|++|||||++.+.+...+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999998877643
No 438
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.82 E-value=0.17 Score=47.54 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.-..+.++|++|+|||+++++++..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999988753
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.79 E-value=0.16 Score=47.68 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56999999999999999998864
No 440
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.78 E-value=0.15 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred CCeEEeccCCCCchhhHHHHHh
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..|+++|++|+|||++++++..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998864
No 441
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.77 E-value=0.16 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=0.0
Q ss_pred eEEeccCCCCchhhHHHHHhccC
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l~ 218 (567)
++++||||||||++...+...++
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
No 442
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.77 E-value=0.14 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.|++++|+||+|||++++.++.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999988877654
No 443
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.76 E-value=0.2 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=19.6
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.-+-++||+|+|||++++-+..-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 557799999999999998766543
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.75 E-value=0.16 Score=48.97 Aligned_cols=29 Identities=28% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 189 ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+......+.+.||+|||||++.+.+...+
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.72 E-value=0.14 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.9
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998754
No 446
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.70 E-value=0.1 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.2
Q ss_pred cCCCeEEeccCCCCchhhHHHHHh
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
....|+++|++|+|||++++.+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 567899999999999999998754
No 447
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.68 E-value=0.34 Score=43.70 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.4
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFT 477 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~ 477 (567)
.+.|+|++||||+|+++..+-..|..++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 56899999999999999888776776654
No 448
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.63 E-value=0.2 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||+++++++..-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 468999999999999999998653
No 449
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.63 E-value=0.23 Score=56.57 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHHh
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
-+-..+..+..++++||||||||+++..++.
T Consensus 101 ~i~~~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 101 EFLKLYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444566788999999999999998877754
No 450
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.60 E-value=0.19 Score=47.59 Aligned_cols=21 Identities=38% Similarity=0.268 Sum_probs=17.8
Q ss_pred HhcCCCeEEeccCCCCchhhH
Q psy12736 190 NEIKRPCIVVGDTGTSKTATM 210 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i 210 (567)
+..++++++++|||||||...
T Consensus 54 ~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 54 ILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHTTCCEEEECCTTSCHHHHH
T ss_pred HhCCCCEEEECCCCChHHHHH
Confidence 346899999999999999754
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.60 E-value=0.2 Score=45.54 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.8
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||+++ +++..
T Consensus 14 ~~ki~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHH
T ss_pred ccEEEEECCCCCCHHHHH-HHHHh
Confidence 346899999999999999 45543
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.59 E-value=0.17 Score=48.96 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+|+|.+|+|||++++.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999998865
No 453
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.59 E-value=0.26 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.6
Q ss_pred eEEeccCCCCchhhHHHHHhcc
Q psy12736 196 CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l~~l 217 (567)
++++|+.|+|||++++.++...
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5789999999999999988764
No 454
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.56 E-value=0.19 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.9
Q ss_pred HhcCCCeEEeccCCCCchhhH
Q psy12736 190 NEIKRPCIVVGDTGTSKTATM 210 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i 210 (567)
+.+++++++++|||||||...
T Consensus 59 ~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 59 ALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHTTCCEEEECCTTSCHHHHH
T ss_pred HhCCCCEEEEeCCCCcHHHHH
Confidence 346799999999999999864
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.53 E-value=0.24 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
...|+++|++|+|||+++++++..-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 5679999999999999999998753
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.47 E-value=0.18 Score=44.91 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.8
Q ss_pred eEEeccCCCCchhhHHHHH
Q psy12736 196 CIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 196 vLl~GptGtGKT~~i~~~l 214 (567)
.+++||+|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999998853
No 457
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.45 E-value=0.2 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+-|+|+.|+||||||++++.++.++
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987643
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.40 E-value=0.17 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.2
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..-++++|++|||||++++.+...+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4557889999999999999887764
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.39 E-value=0.15 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
.+.-+.+.|++|||||++++.+...+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567789999999999999998887764
No 460
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.37 E-value=0.16 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
+.-+++.||||||||+++.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 455799999999999999998765
No 461
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.23 E-value=0.21 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=18.1
Q ss_pred CeEEeccCCCCchhhHHHHHhc
Q psy12736 195 PCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 195 pvLl~GptGtGKT~~i~~~l~~ 216 (567)
-.|++|++|||||+.+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999998776543
No 462
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.21 E-value=0.28 Score=50.30 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCC--eEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNEIKRP--CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~~~~p--vLl~GptGtGKT~~i~~~l~~l 217 (567)
+....++..+..|.. ++|+|++|+|||++.+.+...+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
No 463
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.19 E-value=0.22 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.3
Q ss_pred cCCCeEEeccCCCCchhhHHHHHh
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
.+++++++||||+|||.+....+.
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998766554
No 464
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.15 E-value=1.5 Score=43.55 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.3
Q ss_pred eEEeccCCCcHhHHHHHHHHH
Q psy12736 450 CMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~rlaa~i 470 (567)
+.++|++||||+|++++.+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999866543
No 465
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.14 E-value=0.2 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.8
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++||+|+|||++++.+...+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668999999999999999877654
No 466
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.12 E-value=0.19 Score=51.71 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.0
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+-|+||+|||||++++-+..-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 357788899999999999998665543
No 467
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.12 E-value=0.17 Score=48.74 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=21.7
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+..+.-+-++||+|||||++++.+...+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455668899999999999998766544
No 468
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.10 E-value=0.13 Score=51.30 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+.++||+|+|||++++-+..-+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 368889999999999999998765543
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.06 E-value=0.75 Score=42.36 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=46.8
Q ss_pred eEEeccCCCcHhHHH-HHHHHH--cCCeEEEEEecC--CCChhhH--H----------HHHHHHHHHhccCCCcEEEEEe
Q psy12736 450 CMVVGVEGGGKRSLV-RLASFA--AGYQVFTIQLSR--GYNEASF--K----------EDLKSLYNLLGVKNQATVFLFT 512 (567)
Q Consensus 450 ~LLvG~~GsGr~sl~-rlaa~i--~~~~~~~i~~~k--~y~~~~f--~----------edLk~~~~~ag~~~~~~vfl~~ 512 (567)
.++.|+.|+||++++ +++... .+.++.-+.... .|+.... + .++..++..+ .+..-+++++
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~--~~~~dvviID 83 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI--EEDTRGVFID 83 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC--CTTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh--cCCCCEEEEE
Confidence 479999999999996 776544 566654443221 1211000 0 0112222222 2356788899
Q ss_pred cCcccchhhhHHhh-hccCC
Q psy12736 513 AAEIVEEGYQVFTI-QLSRG 531 (567)
Q Consensus 513 d~qi~~e~fle~in-lL~~G 531 (567)
+.|..++.+++.++ +...|
T Consensus 84 E~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHTT
T ss_pred CcccCCHHHHHHHHHHHHCC
Confidence 99998777888887 76653
No 470
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.02 E-value=0.19 Score=48.66 Aligned_cols=24 Identities=42% Similarity=0.529 Sum_probs=21.3
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.02 E-value=0.25 Score=52.67 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 186 l~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++.-+..|.-+.++||+|||||++++-+..-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55556789999999999999999998766543
No 472
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.00 E-value=0.18 Score=46.70 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999988653
No 473
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.99 E-value=0.18 Score=48.12 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.7
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
.|.-+++.|+||+|||+++.+++.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4777999999999999999987654
No 474
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.90 E-value=0.17 Score=47.64 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.7
Q ss_pred CCCeEEeccCCCCchhhHHHHHh
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~ 215 (567)
+.-+.++|++|||||++.+.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999998877643
No 475
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.85 E-value=0.17 Score=52.03 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHhc--CCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 189 MNEI--KRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 189 ll~~--~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
-+.. +..+.++||+|||||++++.+...+.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445 78899999999999999998776553
No 476
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=87.85 E-value=0.15 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999997654
No 477
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.83 E-value=0.38 Score=43.08 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.0
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.+++|.|.+||||+|++++.|-..|+.++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4679999999999999999888778887764
No 478
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.76 E-value=0.13 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=5.5
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|+++|++|+|||++++.++..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998865
No 479
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.74 E-value=0.49 Score=42.89 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.9
Q ss_pred CceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 448 GHCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 448 Gh~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
..++++|.+||||+++++..+...++.++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4689999999999999998887777776654
No 480
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.74 E-value=0.2 Score=51.46 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=22.2
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|.-+-|+||+|||||++++-+..-+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 357888999999999999998765443
No 481
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.63 E-value=0.18 Score=49.55 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.3
Q ss_pred HhcCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 190 NEIKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 190 l~~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
+. |.-+.++||+|+|||++++-+..-+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 7788999999999999998766544
No 482
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.61 E-value=0.53 Score=42.38 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.3
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTIQ 479 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i~ 479 (567)
.++|+|++||||+|+++..+-..+..++.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 4689999999999999988887776666543
No 483
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.58 E-value=0.4 Score=42.71 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=24.7
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.++|.|++||||+|+++..+-..++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 368999999999999998887777776543
No 484
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.51 E-value=0.26 Score=55.35 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCeEEeccCCCCchhhHHHHH
Q psy12736 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFL 214 (567)
Q Consensus 185 ll~~ll~~~~pvLl~GptGtGKT~~i~~~l 214 (567)
.+..++..+++++++||||||||+.+...+
T Consensus 38 ~i~~~~~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 38 AVKKGLLEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp HHHTTTTTTCCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEEcCCCCcHHHHHHHHH
Confidence 344445569999999999999999885543
No 485
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.44 E-value=0.22 Score=51.68 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.5
Q ss_pred hcCCCeEEeccCCCCchhhHHHHHhccC
Q psy12736 191 EIKRPCIVVGDTGTSKTATMMNFLRSLS 218 (567)
Q Consensus 191 ~~~~pvLl~GptGtGKT~~i~~~l~~l~ 218 (567)
..|.-+-|+||+|||||++++-+..-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3577888999999999999987665443
No 486
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.44 E-value=0.27 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.6
Q ss_pred cCCCceEEeccCCCcHhHHHHHHHHH
Q psy12736 445 LSRGHCMVVGVEGGGKRSLVRLASFA 470 (567)
Q Consensus 445 ~p~Gh~LLvG~~GsGr~sl~rlaa~i 470 (567)
.|+|.++++|++||||+|+.++.+-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 67888899999999999999887654
No 487
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.44 E-value=0.23 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.8
Q ss_pred CCeEEeccCCCCchhhHHHHHh
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLR 215 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~ 215 (567)
..|+++|++|+|||++++++..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 488
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.42 E-value=0.21 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
...|.++||+|+|||++++.++..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 345699999999999999997653
No 489
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.40 E-value=0.17 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.0
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|+++|++|+|||++++.++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999987643
No 490
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.40 E-value=0.23 Score=50.95 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCCCeEEeccCCCCchhhHHHHHhccCC
Q psy12736 180 TKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSP 219 (567)
Q Consensus 180 vR~~~ll~~ll~~~~pvLl~GptGtGKT~~i~~~l~~l~~ 219 (567)
++....+ .=+..|.-+.|+||+|+|||++++.+......
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3433333 33567999999999999999999888877544
No 491
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.36 E-value=0.18 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.0
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-+.++||+|+|||++++.+...+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46678999999999999999876654
No 492
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.35 E-value=0.23 Score=51.29 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=21.6
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|.-+-|+||+|||||++++-+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 57788899999999999998765543
No 493
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.34 E-value=0.29 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhcc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
..|+++|++|+|||++++.++..-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 494
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.34 E-value=0.45 Score=42.92 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=26.0
Q ss_pred ceEEeccCCCcHhHHHHHHHHHcCCeEEEE
Q psy12736 449 HCMVVGVEGGGKRSLVRLASFAAGYQVFTI 478 (567)
Q Consensus 449 h~LLvG~~GsGr~sl~rlaa~i~~~~~~~i 478 (567)
.++|+|++||||+|+++..|-..++.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999888888877654
No 495
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.34 E-value=0.37 Score=49.56 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHhcCCCceEEeccCCCcHhHHHHHHHH-Hc---CCeEEEEE
Q psy12736 442 ALRLSRGHCMVVGVEGGGKRSLVRLASF-AA---GYQVFTIQ 479 (567)
Q Consensus 442 vL~~p~Gh~LLvG~~GsGr~sl~rlaa~-i~---~~~~~~i~ 479 (567)
++..|+|.++++|++||||+|+.+..+- +. +..+..++
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 3567899999999999999999996644 32 34455443
No 496
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.34 E-value=0.22 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.2
Q ss_pred CCeEEeccCCCCchhhHHHHHhc
Q psy12736 194 RPCIVVGDTGTSKTATMMNFLRS 216 (567)
Q Consensus 194 ~pvLl~GptGtGKT~~i~~~l~~ 216 (567)
..|.++|++|+|||++++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.29 E-value=0.24 Score=45.81 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 193 KRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 193 ~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
++-.+++||+|+|||+++.+.+.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4557899999999999997777654
No 498
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.26 E-value=0.22 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.4
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.+.-++++||+|+|||+++..+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999887655
No 499
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.23 E-value=0.23 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.5
Q ss_pred cCCCeEEeccCCCCchhhHHHHHhcc
Q psy12736 192 IKRPCIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 192 ~~~pvLl~GptGtGKT~~i~~~l~~l 217 (567)
.|.-+-|+||+|||||++++-+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 57778899999999999998765543
No 500
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.21 E-value=0.22 Score=49.62 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=26.0
Q ss_pred hHHHHHHHHHh-----cCCC--eEEeccCCCCchhhHHHHHhcc
Q psy12736 181 KLTWILSLMNE-----IKRP--CIVVGDTGTSKTATMMNFLRSL 217 (567)
Q Consensus 181 R~~~ll~~ll~-----~~~p--vLl~GptGtGKT~~i~~~l~~l 217 (567)
...++++.+.. .++| +.++||+|||||++++.+...+
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45556665554 2333 5689999999999998776655
Done!