RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12736
(567 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 250 bits (641), Expect = 3e-72
Identities = 53/236 (22%), Positives = 104/236 (44%), Gaps = 13/236 (5%)
Query: 288 IAELPPTPAKFHYIFNLRDLSRIIQGLT-ATEKIIFNTKEMFVRAWRNEFTRTICDRLNT 346
T + HY+F+ R+L+R+++G+ A T +R W E R DRL
Sbjct: 1459 CKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVG 1518
Query: 347 DEDLSLMSGHIADSVKRNFP-QDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGH 405
++ + + ++V + P QD+ + LLF + + + DL+++
Sbjct: 1519 VKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLS--LDFKEVNKTDLVNF----- 1571
Query: 406 LFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVR 465
E + + + + + +V+ E +H+ RI RAL+ +GH M++G GK L R
Sbjct: 1572 -IEERFKTFCDE---ELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTR 1627
Query: 466 LASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGY 521
++ G ++ ++ R N + F LK + +K T + + I+E +
Sbjct: 1628 FVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAF 1683
Score = 99.1 bits (247), Expect = 1e-21
Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 36/229 (15%)
Query: 4 HIADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEIVQLCQ 63
D +K ++ + N L +L L Q
Sbjct: 1100 FELDKLKDLISDSFDMASLTNIFT--CSNDLVH--------ILGVRTFNKLE----TAVQ 1145
Query: 64 MLQASLDEAN--LGSMSPEE----LEAVFIQSVYASLGASLVAEAQTVFDAHVKNLTGFL 117
+ + ++ + + + +S+ +L E+Q F + G
Sbjct: 1146 LAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFG-- 1203
Query: 118 NVVDSDDRLANYTQIPTAESSWYHYTLDRSKNAWVPWRHLVRSYVHD-GDKSFGDILVPT 176
L++Y + K ++ + + S + + DI++PT
Sbjct: 1204 ---HDSQELSDY----------STIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPT 1250
Query: 177 TDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVI 225
D+ K I + KR I+ G G+ KT M N LR+ S + I
Sbjct: 1251 IDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGI 1299
Score = 32.9 bits (75), Expect = 0.40
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 3 GHIADSVKRNFP-QDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDY 48
+ ++V + P QD+ + LLF + + + DL+++
Sbjct: 1527 QLLYETVDKYLPNQDLGNISSTSLLFSGLLS--LDFKEVNKTDLVNF 1571
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 250 bits (640), Expect = 5e-72
Identities = 69/299 (23%), Positives = 128/299 (42%), Gaps = 29/299 (9%)
Query: 224 VIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNT 283
++ P+ + I+ + L + + + A ++
Sbjct: 1450 ILLVDFPSTSSLTQIY-----GTFNRALMKLLPNLRSFADNLTDAMVEFYSE-------- 1496
Query: 284 DELVIAELPPTPAKFHYIFNLRDLSRIIQG-LTATEKIIFNTKEMFVRAWRNEFTRTICD 342
P + HYI++ R+LSR + L A + + T E VR W +E R D
Sbjct: 1497 ---SQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQD 1552
Query: 343 RLNTDEDLSLMSGHIADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSA 402
RL E+ I + ++FP ++ P+L+ ++ K+ +P DL +Y
Sbjct: 1553 RLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLT--KDYQPVNRSDLREY-- 1608
Query: 403 VGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRS 462
L+ + E + + LVLF + +H+ RI R R +GH +++GV GGGK
Sbjct: 1609 ----VKARLKVFYEE---ELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSV 1661
Query: 463 LVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSLYNLLGVKNQATVFLFTAAEIVEEGY 521
L R ++ G ++TI+++ Y + F +DL+ L G K + F+F + ++E +
Sbjct: 1662 LSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSF 1720
Score = 106 bits (266), Expect = 5e-24
Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 42 YEDLLDYSAVGHLFTEIVQLCQMLQASLDEANLGSMSPEE----LEAVFIQSVYASLGAS 97
D + F+ + + + + MSPE + + S+ LG S
Sbjct: 1162 IMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGS 1221
Query: 98 LVAEAQTVFDAHVKNLTGFLNVVDSDDRLANYTQIPTAESSWYHYTLDRSKNAWVPWRHL 157
+ + F ++ + +P Y++ W W++
Sbjct: 1222 MGLVERENFSKFIQTIAIT--------------PVPANTIPLLDYSVSIDDANWSLWKNK 1267
Query: 158 VRSYVHD-GDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRS 216
V S + + D+++PT D+T+ +L RP I+ G G+ KT T+ + LR+
Sbjct: 1268 VPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRA 1327
Query: 217 LSPDKYLVI 225
+ + +
Sbjct: 1328 FPDFEVVSL 1336
Score = 40.3 bits (94), Expect = 0.002
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 4 HIADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDY 48
I + ++FP ++ P+L+ ++ K+ +P DL +Y
Sbjct: 1566 KIDEVALKHFPSVNLDALKRPILYSNWLT--KDYQPVNRSDLREY 1608
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 2e-11
Identities = 81/618 (13%), Positives = 178/618 (28%), Gaps = 158/618 (25%)
Query: 30 FRNALKETEPRYYEDLLDYSAVGHLFTEIVQLCQMLQASLDEANLGSMSPEELEAVFIQS 89
+++ L E + ++ D V + I+ + +D + + +
Sbjct: 18 YKDILSVFEDAFVDNF-DCKDVQDMPKSILS-----KEEIDH--IIMSKDAVSGTLRLFW 69
Query: 90 VYASLGASLVAEAQTVFDAHVKNLTGFLNVVDSDDRLANYTQIPTAESSWYHYTLDRSKN 149
S +V + V + N FL + + P+ + Y DR
Sbjct: 70 TLLSKQEEMVQKF--VEEVLRINY-KFLM-----SPIKTEQRQPSMMTRMYIEQRDR--- 118
Query: 150 AWVPWRHLVRSYVHDGDKSFGDILVPTTDS-TKL-TWILSLMNEIKRPCIVV-GDTGTSK 206
+++ ++ F V KL +L L +++ G G+ K
Sbjct: 119 ------------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGK 163
Query: 207 TATMMNFLRSLS-----PDK--YLVIAELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIF 259
T ++ S K +L + + L L +I T+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSS 221
Query: 260 NTKEMFVRAWRNEFTRTICDRLNTDELVIAELPPTPAKFHYIFNLRDL--SRIIQGLTAT 317
N K + + E R + + + L++ L ++ ++ +
Sbjct: 222 NIKLRIH-SIQAELRRLLKSKPYENCLLV---------------LLNVQNAKAWNAFNLS 265
Query: 318 EKIIFNTKEMFVRAWRNEFTRT------ICDRLNTDEDLSLMS---GHIADS----VKRN 364
KI+ T+ V + + T T L DE SL+ V
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 365 FPQDVNVV---MRD-PLLFGDFR---------------NALKETEPR-YYEDL------- 397
P+ ++++ +RD + +++ N L+ E R ++ L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 398 -LDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCMVVGVE 456
+ + ++ ++++ K ++ + +E I + E
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NE 442
Query: 457 GGGKRSLVRLASFAAGYQV--FTIQLSRGYNEASFKEDLKSLYNLLG----VKNQA---- 506
RS+V + + Y Y+ +G
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHIGHHLKNIEHPERMT 491
Query: 507 ---TVFL---FTAAEIVEEGYQVF-------TIQLSRGY------NEASFKEDLKSLYNL 547
VFL F +I + T+Q + Y N+ ++ + ++ +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD- 550
Query: 548 LGVKNQATVFLFTAAEIV 565
FL E +
Sbjct: 551 ---------FLPKIEENL 559
Score = 64.5 bits (156), Expect = 7e-11
Identities = 94/652 (14%), Positives = 187/652 (28%), Gaps = 212/652 (32%)
Query: 4 HIADSVKRNFP-QDVNVVMRDP-------LLFGDFRNALKETEPRYYEDLL--DYSAVGH 53
+ D K ++++ ++ LF + +E ++ E++L +Y
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KF 93
Query: 54 LFTEIVQLCQMLQASLDEAN--------------------------------LGSMSPEE 81
L + I + Q S+ L + P +
Sbjct: 94 LMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 82 LEAVFIQSVYASLGA---SLVAEA------QTVFDAHV---------------KNLTGFL 117
+ + LG+ + + Q D + + L L
Sbjct: 152 ----NV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 118 NVVDSD--DRLANYTQIPTAESSWYHYTLDRSKNAWVPWRH----LVRSYVHDGD--KSF 169
+D + R + + I S + + LV V + +F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 170 G---DILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIA 226
IL+ TT ++T LS + + L+ L
Sbjct: 263 NLSCKILL-TTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ 316
Query: 227 ELPPTPAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTD-E 285
+LP + R LS I E I ++ W N + CD+L T E
Sbjct: 317 DLPREVLTTN----PRRLSII------AESI----RDGLAT-WDN-WKHVNCDKLTTIIE 360
Query: 286 LVIAELPPTPAKFHY----IFNLRD-------LSRIIQGLTATEKIIFNTKEMFVRA--- 331
+ L P + + +F LS I + ++ ++ ++ +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVE 418
Query: 332 -WRNEFTRTICD-----RLNTDEDLSLMSGH--IADS--VKRNFPQDVNVVMRDPLLFGD 381
E T +I ++ + + +L H I D + + F D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSD------------- 462
Query: 382 FRNALKETEPRYYEDLLDYSAVG-HLFT-EILEEYNESAGAKARLDLVLFEDAREHLTRI 439
+ + +Y+ YS +G HL E E LD F +
Sbjct: 463 --DLIPPYLDQYF-----YSHIGHHLKNIEHPERMTLF--RMVFLDFR-F---------L 503
Query: 440 HRALRLSRGHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGY------NEASFKEDL 493
+ +R A A+G + T+Q + Y N+ ++ +
Sbjct: 504 EQKIRHD------------------STAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 494 KSLYNLLGVKNQATVFLFTAAEIVEEGYQVFTIQLSRGY-NEASFKEDLKSL 544
++ + FL E + ++++ +EA F+E K +
Sbjct: 546 NAILD----------FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 73/521 (14%), Positives = 158/521 (30%), Gaps = 176/521 (33%)
Query: 3 GHIADSVKRNFPQDVNVVMRDPLLFGDF-RNALKETEPRYYEDLLDYSAVGHLF----TE 57
G+++ V+ + + V+ L +F L+ + ++ L T
Sbjct: 66 GYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDI--------HALAAKLLQENDTT 115
Query: 58 IVQLCQMLQASLDEANLGSMSPEE-------LEAVFIQS--VYASLG-----ASLVAEAQ 103
+V+ ++++ + A + + P + AV + + A G E +
Sbjct: 116 LVKTKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 104 TVFDAHVKNLTGFLNVVDSDDRLANYTQIPTAESSWYHYTLDRSKNAWVPWRHLVRSYVH 163
++ + + + S + L+ + + L+ + ++
Sbjct: 175 DLYQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLN------------ILEWLE 220
Query: 164 DGDKSFGDILVPTTD-------STKLTWILSLMNEI-------KRP----CIVVGDTGTS 205
+ P D S L ++ L + + P + G TG S
Sbjct: 221 NPSN------TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 206 K---TATMM-------NFLR-----------------------SLSP---DKYLVIAELP 229
+ TA + +F SL P + L E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 230 PTPAKFHYIFNLRDLSR-----II----QGLTATEKI---IFNTKEMFV----------- 266
P+P + ++ +L++ + L A +++ + N + V
Sbjct: 335 PSP-----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 267 -RAWRNEFTRTICD--RLNTDE--LVIAE--LPPT-PAKFH--YIFNLRDLSRIIQGLTA 316
R + D R+ E L + LP P FH L S +I
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--FHSHL---LVPASDLINKDLV 444
Query: 317 TEKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSVKRNFPQDVNVVMRDP 376
+ FN K++ + + DL ++SG I++ + V+ ++R P
Sbjct: 445 KNNVSFNAKDIQIPVYDTF----------DGSDLRVLSGSISERI-------VDCIIRLP 487
Query: 377 LLFGDFRNALKETEPRYYEDLLDY-----SAVGHLFTEILE 412
+ + + +LD+ S +G L +
Sbjct: 488 V---KWETTTQFKATH----ILDFGPGGASGLGVLTHRNKD 521
Score = 51.2 bits (122), Expect = 9e-07
Identities = 88/569 (15%), Positives = 164/569 (28%), Gaps = 192/569 (33%)
Query: 60 QLCQMLQASLDEANLGS------MSPEELEAVFI-----------QSVYASLGASLVAEA 102
QL + L E G +P EL F+ + + + E
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 103 QTVF----DAH--VKNLTGF--LNVVDSDDRLANYTQ--------IPTAESSWYHYTLDR 146
+ + D H L +V + + + NY +S L R
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----ALFR 147
Query: 147 SKNA-------------------------WVPWRHLVRSYVHDGDKSFGDILVPTTDSTK 181
+ + + LV + ++ +++ T D+ K
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 182 L--------TWILSLMNEIKRPCIVVGDTGTSKTATM---MNFLRSLSPDKYLVIAE-LP 229
+ W L N P D + + + + L+ Y+V A+ L
Sbjct: 208 VFTQGLNILEW---LENPSNTP-----DKDYLLSIPISCPLIGVIQLA--HYVVTAKLLG 257
Query: 230 PTPAKFHYIFNLRDLSRIIQGLTA-TEKII-------------F--NTKE----MF---V 266
TP LR ++G T ++ ++ F + ++ +F V
Sbjct: 258 FTPG------ELRS---YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 267 RAWRNEFTRTICDRLNTDELVIAELPPTPAKFHYIFNLRDLSR-----II----QGLTAT 317
R + ++ + D L E P+P + ++ +L++ + L A
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSP-----MLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 318 EKI---IFNTKEMFVRAWRNEFTRTIC------DRLNTD-EDLSLMSGHIADSVKRNFPQ 367
+++ + N + V + LN SG D + F +
Sbjct: 364 KQVEISLVNGAKNLV----------VSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFSE 411
Query: 368 DVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLV 427
R F L P ++ LL A L + L + N S AK + +
Sbjct: 412 ------RKLKFSNRF---LPVASP-FHSHLLV-PAS-DLINKDLVKNNVSFNAKD-IQIP 458
Query: 428 LF-----EDAREH-----------LTR--IH--RALRLSRGHCMVVGVEGGGKRSLVRL- 466
++ D R + R + + H + G GG L L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--PGGASGLGVLT 516
Query: 467 ASFAAGYQVFTIQ---LSRGYN-EASFKE 491
G V I L + + FK+
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 37.0 bits (85), Expect = 0.022
Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 59/206 (28%)
Query: 411 LEEYNESAGAKARLDLVLFEDAREHLTRIH--RALRLSRGHCMVVGVEGGGKRSL-VRLA 467
++ Y S A+ ++ A H + L + + + + + GG++ +R
Sbjct: 1633 MDLYKTSKAAQD-----VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 468 SFAAGYQVF------TIQLSRGYNEAS----F---KEDL--------------KSLYNLL 500
A ++ T ++ + NE S F K L K+ + L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 501 ---GVKNQATVF----L--FTA----AEI--VEEGYQ-VFTIQLSRG---YNEASFKEDL 541
G+ F L + A A++ +E + VF RG E
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY----RGMTMQVAVPRDELG 1803
Query: 542 KSLYNLLGVKNQATVFLFTAAEIVEE 567
+S Y ++ + N V + E ++
Sbjct: 1804 RSNYGMIAI-NPGRVAASFSQEALQY 1828
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 34.3 bits (79), Expect = 0.058
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
S M I++ ++VGD KT ++ F + P+ Y
Sbjct: 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 32.3 bits (74), Expect = 0.30
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+S+ IK C+ VGD KT ++ + + P Y
Sbjct: 4 MSVSKFIK--CVTVGDGAVGKTCMLICYTSNKFPTDY 38
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 31.2 bits (71), Expect = 0.52
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 175 PTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
P + + +K C++VGD KT+ ++++ + P +Y
Sbjct: 4 PGEPGGRGRAGGAEGRGVK--CVLVGDGAVGKTSLVVSYTTNGYPTEY 49
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 31.7 bits (73), Expect = 0.71
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 64 MLQASLD------------EANLGSMSPEELEAVFIQSVYASLGASLVA-----EAQTVF 106
+L A LD + N+ MS EE I + A+L +L
Sbjct: 350 LLAAGLDGIKNKLEAPAPIDRNIYVMSKEERMENGIVDLPATLAEALEEFKSNEVMVKAL 409
Query: 107 DAHV 110
H+
Sbjct: 410 GEHL 413
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223
IK C+VVGD KT ++++ + P +Y+
Sbjct: 28 GQAIK--CVVVGDGAVGKTCLLISYTTNAFPGEYI 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 30.2 bits (68), Expect = 1.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+ C+VVGD KT +M++ P++Y
Sbjct: 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY 47
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.7 bits (67), Expect = 1.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223
+ C+VVGD KT ++++ + P +Y+
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI 35
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223
+K +VVGD+ KTA + F + P+ Y+
Sbjct: 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV 37
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.7 bits (66), Expect = 2.5
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 197 IVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHY-----IFNLRDLSRIIQGL 251
+ VG G+ KT F R L + + L + Y + + I++
Sbjct: 18 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG 77
Query: 252 TATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAELPPTPAKFHYIFNLRDLSRII 311
I + + + + NE+ I ++ V+ + P F R++
Sbjct: 78 YGPNGAIVESYDRLMEKF-NEYLNKILRLEKENDYVLIDTPGQMETF---LFHEFGVRLM 133
Query: 312 QGLT 315
+ L
Sbjct: 134 ENLP 137
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 29.7 bits (67), Expect = 3.1
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 57 EIVQLCQMLQASLDEANLGSMSPEELEAVFIQ--SVYASLGASLVAEAQTVFDAHVKNLT 114
E QL ++ + LD N G + +EL + + + SL+ + + + +L
Sbjct: 329 ETKQLTEIFR-KLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSL- 386
Query: 115 GFLNVVDSD-DRLANYTQIPTAESSWYHY 142
+ ++D D Y++ +
Sbjct: 387 --MPLLDMDGSGSIEYSEFIASAIDRTIL 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 28.9 bits (65), Expect = 3.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223
+K +VVGD+ KTA + F + P+ Y+
Sbjct: 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 29.4 bits (65), Expect = 3.3
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 39/286 (13%)
Query: 192 IKRPCIVVGDTGTSKT--ATMMNFLRSLSPD-KYLVIAELPPTP------AKFHYIFNLR 242
+ C++V TG KT A M+ R K L++A P P F +FNL
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA--PTKPLVLQHAESFRRLFNLP 79
Query: 243 DLS-RIIQGLTATEK---------IIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAELP 292
+ G + E+ +I T + + +V E
Sbjct: 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR----ISLEDVSLIVFDEAH 135
Query: 293 PTPAKFHYIFNLRDL-----SRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTD 347
+ Y+F R+ + ++ GLTA+ +T E + N I R
Sbjct: 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG---STPEKIMEVINNLGIEHIEYRSENS 192
Query: 348 EDL-SLMSGHIADSVKRNFPQDVNVVMRDPL-LFGDFRNALKETEPRYYEDLLDYSAVGH 405
D+ + G + V+ + P+ V + + D L ET
Sbjct: 193 PDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVL 252
Query: 406 LFTEILEEYNESAGAKARLDLVLFEDAREHLTRIHRALRLSRGHCM 451
+I+ E AK DL ++H A+ L +
Sbjct: 253 RAGQIINE----EMAKGNHDLRGLLLYHAMALKLHHAIELLETQGL 294
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 186 LSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+S IK C+ VGD KT ++++ + P Y
Sbjct: 3 MSASRFIK--CVTVGDGAVGKTCLLISYTSNTFPTDY 37
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST
initiative, midwest center for structural genomics,
MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Length = 275
Score = 29.1 bits (65), Expect = 3.7
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 161 YVHDGDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVG 200
YV DG+ F ++ K+ + + + P I+VG
Sbjct: 52 YVLDGNAFFQTF----HEAVKIQSVRAEKTGVS-PAIIVG 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 29.3 bits (66), Expect = 3.8
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 445 LSRGHCMVVGVEGGGKRSLVR-LASFAAGYQVFTIQLSR 482
LS ++G G K + R L + F ++R
Sbjct: 39 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 77
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 29.0 bits (65), Expect = 5.3
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 163 HDGDKSFGDILVPTTDSTKLTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
HD F + PT+ + + + +I I DT + + S P
Sbjct: 14 HDQGPLFDNAPEPTSTQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGT 73
Query: 223 LVI--AELPPTPAKFHYIFNLRDLSRII----QGLTATEKIIFN 260
+P +P+ +Y F + D + G ++TE +
Sbjct: 74 FDYWKGTIPASPSIKYYRFQINDGTSTAWYNGNGPSSTEPNADD 117
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 28.5 bits (64), Expect = 6.1
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 57 EIVQLCQMLQASLDEANLGSMSPEELEAVFIQSVYASLGASLVAEAQTVFDAHVKNLTGF 116
E +L + +D+ G + EL + + + G + + V +
Sbjct: 333 ETKELTAIFH-KMDKNGDGQLDRAELIEGY-KELMRMKGQDASMLDASAVEHEVDQV--- 387
Query: 117 LNVVDSD-DRLANYTQIPTAESSWYHY 142
L+ VD D + Y++ T
Sbjct: 388 LDAVDFDKNGYIEYSEFVTVAMDRKTL 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 28.2 bits (63), Expect = 6.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+ +K ++VGD G KT+ +M F P+ Y
Sbjct: 32 VRSVK--VVLVGDGGCGKTSLLMVFADGAFPESY 63
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 28.3 bits (64), Expect = 7.3
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 356 HIADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYN 415
I ++++ P + + D R+ LK + + +G L + EE
Sbjct: 348 TITQAIQKYAPSYTDGQLSD---DAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETA 404
Query: 416 ES 417
E+
Sbjct: 405 EA 406
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate
mutase domain, chorismate mutase; HET: TSA; 2.20A
{Escherichia coli} SCOP: a.130.1.1
Length = 109
Score = 26.9 bits (60), Expect = 8.6
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 46 LDYSAVGHLFTEIVQLCQMLQASLDEANLGSMSPEELEAVF 86
LD + LF I++ + Q +L + +L ++P F
Sbjct: 68 LDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARIAF 108
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.8 bits (62), Expect = 8.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYL 223
+ I++ +VVGD KT ++ F + P+ Y+
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYV 55
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.8 bits (62), Expect = 9.4
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 13/113 (11%)
Query: 377 LLFGDF--RNALKETEPRYYEDLLDYSAVGHLFTEILEEYNESAGAKARLDLVLFEDARE 434
+ DF ++ + + V L ++EY ES +A L + D
Sbjct: 162 VAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGG--IDEY-ESDVRQAELVVTSTVDISA 218
Query: 435 HLTRIHRALRLSRGHCMVVGVEGGGKRSLVRL--------ASFAAGYQVFTIQ 479
+ + G L R+ AGY + +
Sbjct: 219 QARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATFRGLAEVPEAGYVLIGAR 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,767,518
Number of extensions: 546872
Number of successful extensions: 1508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 52
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)