RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12736
(567 letters)
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 35.6 bits (80), Expect = 0.013
Identities = 20/221 (9%), Positives = 42/221 (19%), Gaps = 2/221 (0%)
Query: 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHYIFNL 241
L L ++G GT KT T+ + +
Sbjct: 32 LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 91
Query: 242 RDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAELPPTPAKFHYI 301
+ + V R + L L
Sbjct: 92 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA 151
Query: 302 FNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIADSV 361
L + + + ++ D+ ++ +
Sbjct: 152 DKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL 209
Query: 362 KRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSA 402
+ + M + + R D+L SA
Sbjct: 210 AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 250
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 31.9 bits (71), Expect = 0.096
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 22/165 (13%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY-----------------LVIAELPPT 231
M E K +V+G G K+A + F++ + +KY + E+ T
Sbjct: 1 MREYK--LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDT 58
Query: 232 PAKFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAEL 291
+ + QG I + ++ R + R LV +
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 292 PPTPAKFHYIFNLRDLSRIIQGLTATE---KIIFNTKEMFVRAWR 333
+ ++L+R E K N E+F R
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 31.5 bits (70), Expect = 0.18
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
M IK C+VVGD KT ++++ + P +Y
Sbjct: 1 MQTIK--CVVVGDGAVGKTCLLISYTTNKFPSEY 32
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 0.55
Identities = 28/276 (10%), Positives = 70/276 (25%), Gaps = 42/276 (15%)
Query: 194 RPCIVVGDTGTSKTATMMNFLRSLS--PDKYLVI---------------AELPPTPAKFH 236
R +V G TGT K+ + + D+ +++ L P +
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTK 110
Query: 237 YIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAELPPTPA 296
++ ++ K W + + + + + P+
Sbjct: 111 GWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETA---KKLALIGTPSMR 167
Query: 297 KFHYIFNLRDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGH 356
+ + + + L T + D+L +
Sbjct: 168 ELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFS 227
Query: 357 IADSVKRNFPQDVNVVMRDPLLFGDFRNALKETEPRYYEDLLDYSAVGHLFTEILEEYNE 416
I ++ ++ + R+ + + + +++
Sbjct: 228 IRSWLEDPNGGNLFITWRE-------------------DMGPALRPLISAWVDVVCTSIL 268
Query: 417 SAGAKARLDLVLFEDAREHLTRIH---RALRLSRGH 449
S + + L LF D L ++ AL R
Sbjct: 269 SLPEEPKRRLWLFIDELASLEKLASLADALTKGRKA 304
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.6 bits (65), Expect = 0.61
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
M E K +VVG G K+A + +++ D+Y
Sbjct: 1 MTEYK--LVVVGAGGVGKSALTIQLIQNHFVDEY 32
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 29.6 bits (65), Expect = 0.69
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 192 IKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
I++ ++VGD KT ++ + P+ Y
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVY 31
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 1.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+ E+K ++GDTG K++ M F+
Sbjct: 2 LRELK--VCLLGDTGVGKSSIMWRFVEDSFDPNI 33
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.9 bits (63), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 192 IKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+K +VVGD+ KTA + F + P+ Y
Sbjct: 1 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY 31
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.7 bits (63), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
M E K +V+G G K+A + F+ +KY
Sbjct: 1 MREYK--VVVLGSGGVGKSALTVQFVTGTFIEKY 32
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 1.4
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 190 NEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
N+ + V G G K++ ++ F++ + Y
Sbjct: 1 NDYR--VAVFGAGGVGKSSLVLRFVKGTFRESY 31
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
E+K + G G K+A ++ FL +Y
Sbjct: 2 EVK--LAIFGRAGVGKSALVVRFLTKRFIWEY 31
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.0 bits (61), Expect = 2.0
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 182 LTWILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHYIFNL 241
T I L N + I+VG KT + F + PT +
Sbjct: 4 FTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-------PTIGSNVEEIVI 56
Query: 242 RDLSRIIQGLTATEKIIFNTKEMFVRAWRNEFTRTICDR 280
+ ++ + E + + + DR
Sbjct: 57 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR 95
>d1u1ha1 c.1.22.2 (A:2-395)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 394
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 4/111 (3%)
Query: 132 IPTAESSWYHYTLDRSKN-AWVPWRHLVRSYVHDGDKSFGDILVPTTDSTKLTWILSLMN 190
IP+ + Y LD + VP R+ D F +
Sbjct: 56 IPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMAR-GNASVPAMEMTKWFDT 114
Query: 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHYIFNL 241
+G + + + K L + + P L
Sbjct: 115 NYHYIVPELGP-EVNFSYASHKAVNEYKEAKALGV-DTVPVLVGPVSYLLL 163
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.1 bits (61), Expect = 2.2
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 187 SLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
S+ + + +VVG G K+A + F++S Y
Sbjct: 1 SMQEKYR--LVVVGGGGVGKSALTIQFIQSYFVTDY 34
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
IK C+VVGD KT ++++ + P +Y
Sbjct: 5 AIK--CVVVGDGAVGKTCLLISYTTNAFPGEY 34
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 27.7 bits (60), Expect = 2.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 173 LVPTTDSTKLTWILSLMNEIKRPCIVVG 200
L+P D +T + + +RP I G
Sbjct: 11 LLPEPDVQAVTRLTQTLLAAERPLIYYG 38
>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 301
Score = 27.8 bits (62), Expect = 3.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 94 LGASLVAEAQTVFDAHVKNLTGF-LNVVD--SDDRLANYTQIPTAESSWYHYTLDRSKNA 150
L A +A + D V GF LNV + + D Y + + ++ HY +D S+N
Sbjct: 172 LSAEAMA--ARLNDVGVGRARGFSLNVSNFYTTDEEIGYGEAISGLTNGSHYVIDTSRNG 229
Query: 151 WVPWR 155
P
Sbjct: 230 AGPAP 234
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 191 EIKRPCIVVGDTGTSKTATMMNFLRSLSPDKY 222
+++ ++VGD GT KT + L KY
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY 32
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 27.3 bits (59), Expect = 3.8
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 189 MNEIKRPCIVVGDTGTSKTATMMNFLR 215
+ E++ V+GD + K++ + FL
Sbjct: 3 IPELR--LGVLGDARSGKSSLIHRFLT 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.9 bits (58), Expect = 4.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
+VVG G K+A + F++S Y
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDY 35
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 183
Score = 27.0 bits (60), Expect = 4.7
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 424 LDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLAS----FAAGYQV 475
+D+ + ++A I + +R+ + V GKR LV+L S A
Sbjct: 69 MDVDIVDNAEAIADEIEKMIRVYQDDDTNVEPMYDGKRLLVQLPSERVKVMADPYS 124
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.9 bits (58), Expect = 5.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
+VVGD G K+A + F + + Y
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDY 33
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028)
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.8 bits (59), Expect = 5.0
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 34 LKETEPRYYEDLLDYSAVGHLFTEIVQLCQMLQASLDEANLGSMSPEELEAVFIQSV 90
E + E + A E + L+ + PE + + +
Sbjct: 119 HVPEEGPWAELSQHWFA-----PEFQAVLYDLEVLARGL-WEDLDPEVVRTYLRRIL 169
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol
dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Length = 174
Score = 26.8 bits (58), Expect = 5.8
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 439 IHRALRLSR--GHCMVVGVEGGGKRSLVRLASFAAGYQVFTIQLSRGYNEASFKEDLKSL 496
+ +A+++ + G + G G L+ + G TI+ E L+ +
Sbjct: 110 LSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169
Query: 497 Y 497
Sbjct: 170 V 170
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 184
Score = 26.6 bits (59), Expect = 6.3
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 424 LDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLAS----FAAGYQV 475
L+ + +A + + +++ G V GGK L++ A +
Sbjct: 70 LNYDIVGNADAIAENVKKLVQVDEGDDTNVIKVKGGKSLLIQSPKSRIIAGADFMS 125
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 6.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
++G K++ + F+ D Y
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSY 33
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 187
Score = 26.6 bits (59), Expect = 6.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 424 LDLVLFEDAREHLTRIHRALRLSRGHCMVVGVEGGGKRSLVRLAS----FAAGYQV 475
LDL + +A ++++ V + GGGKR+LV++ S AA Y
Sbjct: 73 LDLDIVGNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQVPSARFDVAAEYSA 128
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 26.9 bits (58), Expect = 7.7
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 185 ILSLMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTP 232
+ + R I G KT + L +L L + P P
Sbjct: 25 LREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNP 72
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.1 bits (56), Expect = 7.9
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
+++G+ KT+ ++ + + DK+
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKH 32
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.6 bits (57), Expect = 8.3
Identities = 26/247 (10%), Positives = 61/247 (24%), Gaps = 17/247 (6%)
Query: 188 LMNEIKRPCIVVGDTGTSKTATMMNFLRSLSPDKYLVIAELPPTPAKFHYIFNLRDLSRI 247
L +V+G T K++ + + L+ + Y L +L +
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 83
Query: 248 IQGLTAT--EKIIFNTKEMFVRAWRNEFTRTICDRLNTDELVIAELPPTPAKFHYIFNLR 305
I L + + NE + + E +K + I L
Sbjct: 84 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLD 143
Query: 306 DLSRI-------IQGLTATEKIIFNTKEMFVRAWRNEFTRTICDRLNTDEDLSLMSGHIA 358
+ + + A + + + + L +
Sbjct: 144 EAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTV 203
Query: 359 DSVKRNFPQDVNVVMRDPLL-----FGDFRNALKETE--PRYYEDLLDYSAVGHLFTEIL 411
+ +K ++ +R F D+ ++ P + +
Sbjct: 204 E-LKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI 262
Query: 412 EEYNESA 418
+ E A
Sbjct: 263 NQTLEYA 269
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.1 bits (56), Expect = 8.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
I+VG G K+A + F+ + Y
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDY 33
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 26.2 bits (56), Expect = 8.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 196 CIVVGDTGTSKTATMMNFLRSLSPDKY 222
I++GD+G KT+ M ++ ++Y
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQY 31
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 936
Score = 26.6 bits (58), Expect = 9.5
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 392 RYYEDLLDYSAVGHLFTEILEEYNES 417
Y++LL + ++ ++Y E+
Sbjct: 808 GLYDELLVAEELKPFGKQLRDKYVET 833
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,093,540
Number of extensions: 99736
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 36
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)