BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12737
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4
Length = 4471
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 46/51 (90%)
Query: 10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
+ L+VNFSSRTTSMD+QRN+E+ VEKRTKD +GPP K+L++F+DD+NMP+
Sbjct: 2478 IVLMVNFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPR 2528
>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex
OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1
Length = 4625
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
+ L VNFSSRT+S+DVQR IE EKRTKD +GPP K+L++FIDDLNMP+
Sbjct: 2611 IVLNVNFSSRTSSLDVQRAIEDSTEKRTKDTYGPPMGKRLLMFIDDLNMPR 2661
>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex
OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1
Length = 4513
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
+ +NFS++T+S +Q IE +EKRTK VF P K+L+ FIDDLNMPQ
Sbjct: 2522 MTINFSAQTSSNSLQDTIEGKLEKRTKGVFAPAGGKRLVCFIDDLNMPQ 2570
>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2
Length = 4621
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+NFSS TT + QR IES V+KR +GPP KK+ +FIDDLNMP
Sbjct: 2614 LNFSSATTPVMFQRTIESYVDKRMGTTYGPPAGKKMAVFIDDLNMP 2659
>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2
Length = 4024
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
LL+NFS++TT+ Q + S ++KR K VFGPP K++++F+DD+NMP
Sbjct: 2002 LLINFSAQTTAAQTQNIVMSKLDKRRKGVFGPPLGKRMVVFVDDVNMP 2049
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 7 CGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
C ++ L NFSS TT + QR IES V+KR +GPP KK+ +FIDD+NMP
Sbjct: 2611 CHMIKSL-NFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMP 2662
>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4
Length = 4330
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 1 MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+ KN A + + FS+RT++ Q I+S ++KR K VFGPP + I FIDDLNMP
Sbjct: 2241 LLKNLALDYISHFLTFSARTSANQTQDFIDSKLDKRRKGVFGPPLGRNFIFFIDDLNMP 2299
>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2
Length = 3086
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
VNFS+RT++ VQ I + ++KR K VFGPP KK ++FIDD+NMP
Sbjct: 1914 VNFSARTSANQVQNIIMARLDKRRKGVFGPPMGKKCVIFIDDMNMP 1959
>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2
SV=2
Length = 4057
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
L+VNFS++TT+ Q I S ++KR K VFGPP K++I+F+DD+NMP
Sbjct: 2035 LIVNFSAQTTAAQTQNIIMSKLDKRRKGVFGPPLGKRMIVFVDDVNMP 2082
>sp|Q923J6|DYH12_RAT Dynein heavy chain 12, axonemal OS=Rattus norvegicus GN=Dnah12 PE=2
SV=2
Length = 3092
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
VNFS+RT++ VQ I + ++KR K VFGPP KK ++FIDD+NMP
Sbjct: 1920 VNFSARTSANQVQNIIMARLDKRRKGVFGPPMGKKCVVFIDDMNMP 1965
>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3
Length = 4158
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 41/55 (74%)
Query: 6 ACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
+ G V + +NFS++T+S Q IES +E++ K++ G P +K++++F+DDLNMP+
Sbjct: 2116 SAGYVPVYLNFSAQTSSARTQEIIESKLERKRKNILGAPGNKRIVIFVDDLNMPR 2170
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
L+VN S++TTS +VQ IES VEKRTK V+ P K +I F+DDLNMP
Sbjct: 2441 LVVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMP 2488
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
L+VN S++TTS +VQ IES VEKRTK V+ P K +I F+DDLNMP
Sbjct: 2470 LVVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMP 2517
>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2
Length = 4490
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+NFSS T M QR IES V+KR +GPP +K+ +FIDD+NMP
Sbjct: 2483 LNFSSATEPMMFQRTIESYVDKRIGSTYGPPGGRKMTVFIDDINMP 2528
>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2
Length = 4731
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+NFSS T M QR IES V+KR +GPP +K+ +FIDD+NMP
Sbjct: 2724 LNFSSATEPMMFQRTIESYVDKRMGSTYGPPGGRKMTVFIDDINMP 2769
>sp|Q6ZR08|DYH12_HUMAN Dynein heavy chain 12, axonemal OS=Homo sapiens GN=DNAH12 PE=2 SV=2
Length = 3092
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+N S+RT++ VQ I + ++KR K VFGPP KK I+FIDD+NMP
Sbjct: 1920 INLSARTSANQVQNIIMARLDKRRKGVFGPPMGKKCIIFIDDMNMP 1965
>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2
SV=2
Length = 4516
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 1 MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+ KN + + FS+RT++ Q I+S ++KR K VFGPP + I FIDDLNMP
Sbjct: 2474 LLKNLPLEYISHFLTFSARTSANQTQDLIDSKLDKRRKGVFGPPLGRNFIFFIDDLNMP 2532
>sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1
Length = 4116
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+NFS+RT++ Q I S +++R K +FGPP KK ++F+DDLNMP
Sbjct: 2101 INFSARTSANQTQDIIMSKLDRRRKGLFGPPIGKKAVVFVDDLNMP 2146
>sp|Q8BW94|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2
Length = 4083
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+NFS+RT++ Q I S +++R K +FGPP KK ++F+DDLNMP
Sbjct: 2068 INFSARTSANQTQDIIMSKLDRRRKGLFGPPIGKKAVVFVDDLNMP 2113
>sp|P39057|DYHC_HELCR Dynein beta chain, ciliary OS=Heliocidaris crassispina PE=1 SV=1
Length = 4466
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +QR +E +EK+ +GPP KKL+ FIDD+NMP+
Sbjct: 2486 VPFNYYTTSEMLQRVLEKPLEKKAGRNYGPPGTKKLVYFIDDMNMPE 2532
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA2 PE=1 SV=1
Length = 4485
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+ FSS TT Q +IE VEKR FGPP K++ +F+DD++MP
Sbjct: 2452 ITFSSLTTPGIFQMSIEGAVEKRQGRTFGPPGGKQMCIFVDDISMP 2497
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1
Length = 4466
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +QR +E +EK+ +GPP KKL+ FIDD+NMP+
Sbjct: 2486 VPFNYYTTSEMLQRVLEKPLEKKAGRNYGPPGTKKLVYFIDDMNMPE 2532
>sp|Q9NYC9|DYH9_HUMAN Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3
Length = 4486
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +Q +E +EK+ +GPP +KKLI FIDD+NMP+
Sbjct: 2505 VPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGNKKLIYFIDDMNMPE 2551
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 16 FSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
F+ TTS +VQ ++S +EK++ F PP +KLI FIDD+NMP+
Sbjct: 2574 FNYYTTSKNVQTLMQSCLEKKSGKQFSPPYQQKLIYFIDDINMPK 2618
>sp|Q96DT5|DYH11_HUMAN Dynein heavy chain 11, axonemal OS=Homo sapiens GN=DNAH11 PE=1 SV=3
Length = 4523
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +Q+ +E +EK+ +GP +KKLI FIDD+NMP+
Sbjct: 2543 VPFNYYTTSTALQKILEKPLEKKAGHNYGPGGNKKLIYFIDDMNMPE 2589
>sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal OS=Mus musculus GN=Dnah17 PE=2 SV=2
Length = 4481
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +Q +E +EK++ +GPP KKLI FIDD+NMP+
Sbjct: 2466 VPFNFYTTSAMLQGVLEKPLEKKSGRNYGPPGTKKLIYFIDDMNMPE 2512
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
V F+ TTS +Q +E +EK++ +GPP KKL+ FIDD+NMP+
Sbjct: 2468 VPFNFYTTSAMLQGVLEKPLEKKSGRNYGPPGTKKLVYFIDDMNMPE 2514
>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3
Length = 3507
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
G V +NFS+ T+ + I + +RTKD G P + ++++FIDD+NMP
Sbjct: 1884 GVVVSTINFSTNVTAAKTKEMILKKLIRRTKDTLGAPKNNRILIFIDDMNMP 1935
>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA11 PE=3 SV=2
Length = 4499
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDV-FGPPPDKKLILFIDDLNMPQ 60
+ L ++F+ T + Q+ +ES +EK+ + +GPP K+LI F+DDLNMP+
Sbjct: 2391 ISLSISFNYFTDVVSFQKVLESPLEKQPAGINYGPPGTKQLIYFVDDLNMPK 2442
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA4 PE=3 SV=1
Length = 4568
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
+N +S + + +Q +E +EK++ +GPP ++++ F+DD+NMP
Sbjct: 2557 INMNSLSEAPALQVILEQPLEKKSGVRYGPPGSRRMVYFVDDMNMP 2602
>sp|Q9SMH5|DYHC2_CHLRE Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii
GN=DHC1B PE=1 SV=2
Length = 4334
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 13 LVNFSSRTTSMDVQRNIESVVEKRTKDVFG----PPPDKKLILFIDDLNMPQ 60
+VN S++T++ +V + + V K G PP + ++IL++ DLN+P+
Sbjct: 2358 VVNCSAQTSAANVVQKLVQVCGKPVTTTSGKALRPPDNTRVILYLKDLNLPR 2409
>sp|P42203|IL13_RAT Interleukin-13 OS=Rattus norvegicus GN=Il13 PE=2 SV=1
Length = 131
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 7 CGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKL 49
C A++ L N SS QR + + ++ DV PPD K+
Sbjct: 68 CAALESLTNISSCNAIHRTQRILNGLCNQKASDVASSPPDTKI 110
>sp|P17396|DPOL_WHV5 Protein P OS=Woodchuck hepatitis B virus (isolate 8) GN=P PE=3
SV=1
Length = 884
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 27 RNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57
RNI+S+ E+ +++ GPP D +L +DLN
Sbjct: 9 RNIQSLGEEEVQELLGPPEDALPLLAGEDLN 39
>sp|P12898|DPOL_WHV4 Protein P OS=Woodchuck hepatitis B virus (isolate 7) GN=P PE=3
SV=1
Length = 884
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 27 RNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57
RNI+S+ E+ +++ GPP D +L +DLN
Sbjct: 9 RNIQSLGEEEVQELLGPPEDALPLLAGEDLN 39
>sp|P12899|DPOL_WHV3 Protein P OS=Woodchuck hepatitis B virus (isolate 59) GN=P PE=3
SV=1
Length = 884
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 27 RNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57
RNI+S+ E+ +++ GPP D +L +DLN
Sbjct: 9 RNIQSLGEEEVQELLGPPEDALPLLAGEDLN 39
>sp|Q64898|DPOL_ASHV Protein P OS=Artic squirrel hepatitis virus GN=P PE=3 SV=1
Length = 877
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 27 RNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57
RNI+S+ E+ +++ GPP D +L +DLN
Sbjct: 9 RNIQSLGEEEVQELLGPPEDALPLLAGEDLN 39
>sp|P03160|DPOL_WHV1 Protein P OS=Woodchuck hepatitis B virus (isolate 1) GN=P PE=3
SV=1
Length = 879
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 27 RNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57
RNI+S+ E+ +++ GPP D +L +DLN
Sbjct: 9 RNIQSLGEEEVQELLGPPEDALPLLAGEDLN 39
>sp|O26964|RF1_METTH Peptide chain release factor subunit 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=prf1 PE=3 SV=1
Length = 407
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 15 NFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFI 53
N S+ T +VQ IE V+ +R K +F PP+K L++F+
Sbjct: 56 NIKSKQTKKNVQSAIE-VIMQRLK-LFPKPPEKGLVMFV 92
>sp|Q2NEL3|RF1_METST Peptide chain release factor subunit 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1
Length = 411
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 15 NFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFI 53
N S+ T +VQ IE ++++ +F PP+K L++F+
Sbjct: 56 NIKSKQTRKNVQSAIEVIIQRLK--LFPKPPEKGLVMFV 92
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium tetraurelia GN=DHC-8
PE=2 SV=1
Length = 4540
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 12 LLVNFSSRTTSMDVQRNIESVVE--KRTKDVFGPPPDKK-LILFIDDLNMP 59
+ +NFSS T + + + E K T VF P ++K L++F D++N+P
Sbjct: 2519 IFINFSSSTMPQLIIKQFDHYCEYKKTTNGVFLQPKNQKWLVVFCDEINLP 2569
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,820,228
Number of Sequences: 539616
Number of extensions: 546660
Number of successful extensions: 1386
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1348
Number of HSP's gapped (non-prelim): 44
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)