Query psy12737
Match_columns 60
No_of_seqs 114 out of 622
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:23:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.3 2.6E-12 8.7E-17 104.8 6.3 57 3-60 1326-1387(3245)
2 4akg_A Glutathione S-transfera 99.1 1.1E-10 3.7E-15 94.5 5.8 53 8-60 1293-1349(2695)
3 2chg_A Replication factor C sm 63.4 16 0.00053 20.8 4.5 42 11-57 71-112 (226)
4 1ycy_A Conserved hypothetical 57.9 2.2 7.4E-05 23.1 0.0 14 44-57 52-65 (71)
5 3fsi_A RT, reverse transcripta 54.1 2.8 9.6E-05 26.3 0.1 44 9-56 160-203 (255)
6 2lxa_A Ubiquitin-like protein 51.8 20 0.0007 19.3 3.5 30 3-32 7-37 (87)
7 4a20_A Ubiquitin-like protein 48.9 30 0.001 19.0 3.9 30 3-32 25-55 (98)
8 2v1u_A Cell division control p 46.4 52 0.0018 20.6 5.7 50 8-57 78-140 (387)
9 1rw3_A POL polyprotein; RNA an 44.8 5.2 0.00018 27.2 0.3 45 8-56 163-207 (455)
10 1qc6_A EVH1 domain from ENA/VA 44.2 7.1 0.00024 22.8 0.8 35 10-44 86-120 (130)
11 2lnd_A De novo designed protei 42.7 34 0.0012 19.4 3.5 26 19-54 34-59 (112)
12 1sxj_A Activator 1 95 kDa subu 41.2 28 0.00095 24.0 3.5 49 9-57 103-158 (516)
13 3te6_A Regulatory protein SIR3 40.4 50 0.0017 21.8 4.6 50 8-57 80-142 (318)
14 2kdb_A Homocysteine-responsive 40.0 38 0.0013 18.6 3.4 35 11-51 37-72 (99)
15 3u61_B DNA polymerase accessor 37.8 71 0.0024 19.9 4.8 41 11-58 76-116 (324)
16 1pdo_A Mannose permease; phosp 35.8 61 0.0021 18.4 4.3 39 9-54 28-66 (135)
17 1fnn_A CDC6P, cell division co 35.7 82 0.0028 19.8 5.2 25 9-33 74-98 (389)
18 3pfi_A Holliday junction ATP-d 34.6 42 0.0014 21.1 3.4 34 11-57 83-116 (338)
19 1wgd_A Homocysteine-responsive 34.2 53 0.0018 17.2 4.4 27 7-33 17-43 (93)
20 1jbk_A CLPB protein; beta barr 34.1 14 0.00047 20.6 0.9 12 46-57 114-125 (195)
21 4e1r_A Protein LSR2; anti-para 34.0 4.3 0.00015 22.9 -1.3 18 40-57 21-39 (86)
22 3bci_A Disulfide bond protein 33.3 17 0.0006 21.0 1.3 21 39-59 4-24 (186)
23 1hqc_A RUVB; extended AAA-ATPa 31.6 58 0.002 20.1 3.6 36 11-58 66-101 (324)
24 1njg_A DNA polymerase III subu 31.4 21 0.00072 20.4 1.4 14 44-57 123-136 (250)
25 2p65_A Hypothetical protein PF 31.3 17 0.00058 20.3 1.0 11 47-57 115-125 (187)
26 4fbj_B NEDD8; effector-HOST ta 30.8 61 0.0021 16.8 3.5 22 12-33 13-34 (88)
27 3gx1_A LIN1832 protein; APC633 30.8 78 0.0027 18.1 4.1 39 9-54 31-69 (130)
28 1mu2_A HIV-2 RT; HIV-2 reverse 29.8 10 0.00035 26.5 -0.2 45 8-56 143-187 (555)
29 3gyk_A 27KDA outer membrane pr 29.8 42 0.0014 19.0 2.6 24 36-59 12-35 (175)
30 2ifs_A N-WAsp, wiskott-aldrich 29.2 28 0.00097 21.4 1.8 32 8-39 132-163 (169)
31 1mke_A WIP - N-WAsp, fusion pr 29.1 25 0.00087 21.3 1.6 32 8-39 115-146 (152)
32 1z6m_A Conserved hypothetical 27.6 43 0.0015 19.0 2.3 23 37-59 18-40 (175)
33 1xod_A Spred1; sprouty, EVH1, 26.7 22 0.00075 20.5 0.9 29 10-38 89-117 (118)
34 1w5s_A Origin recognition comp 26.6 32 0.0011 22.0 1.8 12 46-57 137-148 (412)
35 1sxj_B Activator 1 37 kDa subu 26.0 1E+02 0.0035 18.7 4.0 43 11-57 75-117 (323)
36 1xwi_A SKD1 protein; VPS4B, AA 25.9 29 0.00098 22.4 1.5 11 47-57 105-115 (322)
37 4eew_A Large proline-rich prot 25.5 75 0.0026 16.2 3.3 22 12-33 30-51 (88)
38 3rw6_A Nuclear RNA export fact 25.0 1.2E+02 0.004 19.4 4.3 47 6-56 21-71 (267)
39 3gv1_A Disulfide interchange p 24.7 48 0.0016 19.2 2.2 20 40-59 8-27 (147)
40 1v58_A Thiol:disulfide interch 24.2 57 0.0019 20.0 2.6 24 36-59 87-110 (241)
41 2zd1_A Reverse transcriptase/r 24.2 18 0.0006 25.4 0.2 44 9-56 146-189 (557)
42 3gmf_A Protein-disulfide isome 22.8 57 0.0019 19.8 2.3 21 39-59 8-28 (205)
43 3mtn_B UBA80, ubcep1, ubiquiti 22.1 85 0.0029 15.5 3.7 23 11-33 15-37 (85)
44 2fzp_A NRDP1, ring finger prot 21.9 43 0.0015 20.3 1.6 15 46-60 109-125 (144)
45 1eej_A Thiol:disulfide interch 21.9 63 0.0022 19.3 2.4 24 36-59 76-99 (216)
46 2qp9_X Vacuolar protein sortin 21.4 31 0.0011 22.5 1.0 11 47-57 143-153 (355)
47 3n3k_B Ubiquitin; hydrolase, p 21.1 91 0.0031 15.5 4.1 23 11-33 15-37 (85)
48 3c5t_B Exendin-4, exenatide; l 20.9 20 0.00067 16.5 -0.1 28 17-44 3-30 (31)
49 1t3b_A Thiol:disulfide interch 20.9 68 0.0023 19.2 2.4 36 22-59 64-99 (211)
50 1nyn_A Hypothetical 12.0 kDa p 20.9 56 0.0019 19.5 1.9 13 45-57 32-44 (131)
51 3gdw_A Sigma-54 interaction do 20.7 1.3E+02 0.0046 17.3 3.7 41 9-54 31-71 (139)
52 2zd1_B P51 RT; P51/P66, hetero 20.6 15 0.00053 24.9 -0.7 44 9-56 144-187 (428)
53 3a9j_A Ubiquitin; protein comp 20.6 86 0.003 15.1 4.1 23 11-33 12-34 (76)
54 4dwf_A HLA-B-associated transc 20.5 1E+02 0.0034 15.7 3.3 22 12-33 18-39 (90)
55 3phx_B Ubiquitin-like protein 20.4 93 0.0032 15.4 3.9 23 11-33 16-38 (79)
56 3gha_A Disulfide bond formatio 20.3 70 0.0024 19.1 2.3 22 38-59 21-42 (202)
57 2x4k_A 4-oxalocrotonate tautom 20.2 57 0.002 15.2 1.6 42 12-54 6-47 (63)
58 2lez_A Secreted effector prote 20.2 74 0.0025 19.3 2.4 23 32-57 48-70 (145)
59 1vdm_A Purine phosphoribosyltr 20.2 40 0.0014 19.1 1.2 12 44-56 81-92 (153)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.30 E-value=2.6e-12 Score=104.82 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=48.0
Q ss_pred cccccCcceEEEecCcccCHHHHHHHHhhhceecc----CCeeeCCC-CcEEEEEEccCCCCC
Q psy12737 3 KNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRT----KDVFGPPP-DKKLILFIDDLNMPQ 60 (60)
Q Consensus 3 ~~~~~~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~----~~~~gpp~-gk~~v~FvDDlNmP~ 60 (60)
..++ ++....||||++|++..+|..+++++++|+ |..|||+. ||++|+||||+|||+
T Consensus 1326 ~~l~-~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1326 RAFP-DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS 1387 (3245)
T ss_dssp GGCT-TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCC
T ss_pred HhCC-CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCC
Confidence 3444 356789999999999999999999999876 34677774 999999999999995
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.08 E-value=1.1e-10 Score=94.45 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=46.2
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceecc---CCeeeCC-CCcEEEEEEccCCCCC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRT---KDVFGPP-PDKKLILFIDDLNMPQ 60 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~---~~~~gpp-~gk~~v~FvDDlNmP~ 60 (60)
.+....+|||++|++..+|+.+++++++++ +..|||+ .||++|+||||+|||+
T Consensus 1293 ~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~ 1349 (2695)
T 4akg_A 1293 LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPK 1349 (2695)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSC
T ss_pred CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccccc
Confidence 467789999999999999999999998643 5567885 8999999999999995
No 3
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=63.41 E-value=16 Score=20.84 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=25.7
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCC
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlN 57 (60)
...++.+.......+.+.+....... ....++..|++|||+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vliiDe~~ 112 (226)
T 2chg_A 71 FIEMNASDERGIDVVRHKIKEFARTA-----PIGGAPFKIIFLDEAD 112 (226)
T ss_dssp EEEEETTCTTCHHHHHHHHHHHHTSC-----CSTTCSCEEEEEETGG
T ss_pred eEEeccccccChHHHHHHHHHHhccc-----CCCccCceEEEEeChh
Confidence 45667776666666666555443321 1223567899999975
No 4
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=57.93 E-value=2.2 Score=23.13 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=11.8
Q ss_pred CCCcEEEEEEccCC
Q psy12737 44 PPDKKLILFIDDLN 57 (60)
Q Consensus 44 p~gk~~v~FvDDlN 57 (60)
..||.+++-|||+|
T Consensus 52 Nk~k~liv~idDin 65 (71)
T 1ycy_A 52 NRGKQMLIGLEDIN 65 (71)
T ss_dssp EEEEEEEEEGGGEE
T ss_pred cccceeEEEeccce
Confidence 45788999999987
No 5
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=54.09 E-value=2.8 Score=26.35 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccC
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDl 56 (60)
|....+.|--..+++.+|+.+..-+..-+.. -.+..+++|+||+
T Consensus 160 y~~~~mPfGl~~sP~~fq~~m~~il~~~~~~----~~~~~v~~Y~DDi 203 (255)
T 3fsi_A 160 LTWTRLPQGFKNSPTLFDEALHRDLADFRIQ----HPDLILLQYVDDL 203 (255)
T ss_dssp EEESBCCTTCTTHHHHHHHHHHHHTHHHHHH----CTTCEEEEETTEE
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh----CcCcEEEEEcCCe
Confidence 5566678888889999998887766543221 1245688999997
No 6
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=51.84 E-value=20 Score=19.28 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=20.8
Q ss_pred cccccCcceEEEecCcccCHHHHHHHH-hhh
Q psy12737 3 KNFACGAVQLLVNFSSRTTSMDVQRNI-ESV 32 (60)
Q Consensus 3 ~~~~~~~~~~~i~fSa~Tts~~~q~~i-e~k 32 (60)
|.+.++...+.+.++...|...+.+.| +.+
T Consensus 7 Ktl~g~~~~i~v~v~~~~TV~~lK~~I~~~~ 37 (87)
T 2lxa_A 7 KKIQAPKFSIEHDFSPSDTILQIKQHLISEE 37 (87)
T ss_dssp EECSSSCEECCEECCTTCBHHHHHHHHHHTT
T ss_pred EcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh
Confidence 344444445556678999999999888 654
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=48.92 E-value=30 Score=19.03 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=21.2
Q ss_pred cccccCcceEEEecCcccCHHHHHHHH-hhh
Q psy12737 3 KNFACGAVQLLVNFSSRTTSMDVQRNI-ESV 32 (60)
Q Consensus 3 ~~~~~~~~~~~i~fSa~Tts~~~q~~i-e~k 32 (60)
|.+.++.....+.++...|...+.+.| +.+
T Consensus 25 Ktl~g~~~~i~v~v~~~~TV~~lK~~I~~~~ 55 (98)
T 4a20_A 25 KKIQAPKFSIEHDFSPSDTILQIKQHLISEE 55 (98)
T ss_dssp EECSSSCEEEEEEECTTCBHHHHHHHHHHTT
T ss_pred EcCCCCEEEEEEecCCCChHHHHHHHHHHHh
Confidence 444455445666778999999999888 553
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=46.43 E-value=52 Score=20.61 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=27.5
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceecc---C----Cee------eCCCCcEEEEEEccCC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRT---K----DVF------GPPPDKKLILFIDDLN 57 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~---~----~~~------gpp~gk~~v~FvDDlN 57 (60)
.+.+..++.+...++..+...+...+.... + ..+ -...++.+|+|+||+.
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~ 140 (387)
T 2v1u_A 78 LVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEID 140 (387)
T ss_dssp CEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT
T ss_pred CeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHh
Confidence 455677888877777665544333332100 0 000 0124678899999985
No 9
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=44.79 E-value=5.2 Score=27.20 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=31.8
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDl 56 (60)
.|....+.|--..+++.+|+.+..-+..-... -.++.+++|+||+
T Consensus 163 ~y~~~~mpfGl~naP~~fq~~m~~~l~~~~~~----~~~~~v~~YvDDi 207 (455)
T 1rw3_A 163 QLTWTRLPQGFKNSPTLFDEALHRDLADFRIQ----HPDLILLQYVDDL 207 (455)
T ss_dssp EEEESBCCSSCTTHHHHHHHHHHHHHHHHHHT----CTTCEEEEETTEE
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHHhhhh----CCCceEEEEcCCE
Confidence 34556678888888999998877766543222 1357888999997
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=44.17 E-value=7.1 Score=22.75 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=25.1
Q ss_pred ceEEEecCcccCHHHHHHHHhhhceeccCCeeeCC
Q psy12737 10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPP 44 (60)
Q Consensus 10 ~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp 44 (60)
...-|+|.....+..+.+.++.+++.+.+..=|||
T Consensus 86 ~~~GL~F~se~eA~~F~~~~~~al~~~~~~~~~~~ 120 (130)
T 1qc6_A 86 QVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPS 120 (130)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTC-------
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46779999999999999999999998776554444
No 11
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=42.75 E-value=34 Score=19.38 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=19.0
Q ss_pred ccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEc
Q psy12737 19 RTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54 (60)
Q Consensus 19 ~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvD 54 (60)
.|+|..++++|.+-- -.||.+|+||.
T Consensus 34 atssqdirdiiksmk----------dngkplvvfvn 59 (112)
T 2lnd_A 34 ATSSQDIRDIIKSMK----------DNGKPLVVFVN 59 (112)
T ss_dssp ECSHHHHHHHHHHHT----------TCCSCEEEEEC
T ss_pred ccchhhHHHHHHHHH----------hcCCeEEEEec
Confidence 467788888776632 35889999985
No 12
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.22 E-value=28 Score=23.97 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=27.4
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceecc-CCeee------CCCCcEEEEEEccCC
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRT-KDVFG------PPPDKKLILFIDDLN 57 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~-~~~~g------pp~gk~~v~FvDDlN 57 (60)
+.+..++.+...+...++..+...+.... .+.|. +..++..|+||||+.
T Consensus 103 ~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 103 YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence 34566777777766655555443332211 12221 234677899999983
No 13
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=40.44 E-value=50 Score=21.79 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=27.8
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceecc--C--------Ceee---CCCCcEEEEEEccCC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRT--K--------DVFG---PPPDKKLILFIDDLN 57 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~--~--------~~~g---pp~gk~~v~FvDDlN 57 (60)
.+....||....+|+..+-..|-..+...+ . ..|. -..++.+|+++||+.
T Consensus 80 ~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 80 IFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp CEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred ceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 466788998888887766544444442111 0 0011 024567899999975
No 14
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=40.04 E-value=38 Score=18.62 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=24.6
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCC-CCcEEEE
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPP-PDKKLIL 51 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp-~gk~~v~ 51 (60)
...+..+..+|...+.+.|+.+++- +|| ...++|+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g------~pp~~~QrLIy 72 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPS------KPLTKDQRLVY 72 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTT------CCCTTTCCEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcC------CCChhhEEEEE
Confidence 3466778999999999999986632 254 5556654
No 15
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=37.80 E-value=71 Score=19.92 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=22.6
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCCC
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNM 58 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlNm 58 (60)
...++.|... ...+++.+...... .|-.|+..|+||||+..
T Consensus 76 ~~~i~~~~~~-~~~i~~~~~~~~~~------~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 76 MMFVNGSDCK-IDFVRGPLTNFASA------ASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp EEEEETTTCC-HHHHHTHHHHHHHB------CCCSSCEEEEEEESCCC
T ss_pred EEEEcccccC-HHHHHHHHHHHHhh------cccCCCCeEEEEECCcc
Confidence 3445544433 45555555443322 23345678999999863
No 16
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=35.83 E-value=61 Score=18.36 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=28.1
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEc
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvD 54 (60)
.....+.|....+...+.+.++..+++- ..++-+++|+|
T Consensus 28 ~~v~ai~~~~~~~~~~~~~~i~~~i~~~-------~~~~gvliLtD 66 (135)
T 1pdo_A 28 ENVGWIDFVPGENAETLIEKYNAQLAKL-------DTTKGVLFLVD 66 (135)
T ss_dssp SSEEEECBCTTCCHHHHHHHHHHHHTTS-------CCTTCEEEEES
T ss_pred CCEEEEEeeCCCCHHHHHHHHHHHHHhc-------CCCCCEEEEEE
Confidence 4567788888889998988888888653 12345667775
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=35.68 E-value=82 Score=19.79 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=15.5
Q ss_pred cceEEEecCcccCHHHHHHHHhhhc
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
+.+..++.+...++..+-..+-..+
T Consensus 74 ~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 74 ARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp CEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred eeEEEEeCccCCCHHHHHHHHHHHh
Confidence 4567788887777666554443333
No 18
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=34.58 E-value=42 Score=21.08 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=21.3
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCC
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlN 57 (60)
...++.+.......+...+.. .++..++|+||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~vl~lDEi~ 116 (338)
T 3pfi_A 83 IKTTAAPMIEKSGDLAAILTN-------------LSEGDILFIDEIH 116 (338)
T ss_dssp EEEEEGGGCCSHHHHHHHHHT-------------CCTTCEEEEETGG
T ss_pred eEEecchhccchhHHHHHHHh-------------ccCCCEEEEechh
Confidence 455666666666666655543 1234589999986
No 19
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.22 E-value=53 Score=17.17 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=20.7
Q ss_pred cCcceEEEecCcccCHHHHHHHHhhhc
Q psy12737 7 CGAVQLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 7 ~~~~~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
..+....+.....+|...+.+.|+.+.
T Consensus 17 ~~~~~~~v~v~~~~TV~~lK~~I~~~~ 43 (93)
T 1wgd_A 17 QRHRDLELSGDRGWSVGHLKAHLSRVY 43 (93)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEEecCCCCcHHHHHHHHHHHh
Confidence 334456677778999999999998864
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=34.09 E-value=14 Score=20.56 Aligned_cols=12 Identities=50% Similarity=0.994 Sum_probs=9.2
Q ss_pred CcEEEEEEccCC
Q psy12737 46 DKKLILFIDDLN 57 (60)
Q Consensus 46 gk~~v~FvDDlN 57 (60)
++..|+++||++
T Consensus 114 ~~~~vl~iDe~~ 125 (195)
T 1jbk_A 114 EGNVILFIDELH 125 (195)
T ss_dssp TTTEEEEEETGG
T ss_pred CCCeEEEEeCHH
Confidence 345789999985
No 21
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=33.99 E-value=4.3 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.491 Sum_probs=7.2
Q ss_pred eeeCCCCcE-EEEEEccCC
Q psy12737 40 VFGPPPDKK-LILFIDDLN 57 (60)
Q Consensus 40 ~~gpp~gk~-~v~FvDDlN 57 (60)
.|+.|..|+ .|.+||||-
T Consensus 21 ~~~~~MAqkv~V~LvDDLD 39 (86)
T 4e1r_A 21 YFQGAMAKKVTVTLVDDFD 39 (86)
T ss_dssp --------CCCCCCBCTTT
T ss_pred eccccceeEEEEEEEEcCC
Confidence 456665555 456999985
No 22
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=33.26 E-value=17 Score=21.04 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=9.0
Q ss_pred CeeeCCCCcEEEEEEccCCCC
Q psy12737 39 DVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 39 ~~~gpp~gk~~v~FvDDlNmP 59 (60)
-++|++.++.-|+..-|.++|
T Consensus 4 ~~~G~~~a~~~i~~f~D~~Cp 24 (186)
T 3bci_A 4 ATTSSKNGKPLVVVYGDYKCP 24 (186)
T ss_dssp -------CCCEEEEEECTTCH
T ss_pred cCcCCCCCCeEEEEEECCCCh
Confidence 467888887656555566665
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.56 E-value=58 Score=20.11 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCCC
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNM 58 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlNm 58 (60)
...++.+.......+...+...+ ++..++|+||+..
T Consensus 66 ~~~~~~~~~~~~~~l~~~l~~~~------------~~~~~l~lDEi~~ 101 (324)
T 1hqc_A 66 LRVTSGPAIEKPGDLAAILANSL------------EEGDILFIDEIHR 101 (324)
T ss_dssp EEEECTTTCCSHHHHHHHHTTTC------------CTTCEEEETTTTS
T ss_pred EEEEeccccCChHHHHHHHHHhc------------cCCCEEEEECCcc
Confidence 34566666666655555444311 2345899999863
No 24
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.42 E-value=21 Score=20.42 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.7
Q ss_pred CCCcEEEEEEccCC
Q psy12737 44 PPDKKLILFIDDLN 57 (60)
Q Consensus 44 p~gk~~v~FvDDlN 57 (60)
..+++.+++|||+.
T Consensus 123 ~~~~~~vlviDe~~ 136 (250)
T 1njg_A 123 ARGRFKVYLIDEVH 136 (250)
T ss_dssp SSSSSEEEEEETGG
T ss_pred hcCCceEEEEECcc
Confidence 34567899999975
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=31.28 E-value=17 Score=20.26 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.7
Q ss_pred cEEEEEEccCC
Q psy12737 47 KKLILFIDDLN 57 (60)
Q Consensus 47 k~~v~FvDDlN 57 (60)
+..|+||||+.
T Consensus 115 ~~~vl~iDe~~ 125 (187)
T 2p65_A 115 GQVVMFIDEIH 125 (187)
T ss_dssp TSEEEEETTGG
T ss_pred CceEEEEeCHH
Confidence 45789999975
No 26
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=30.83 E-value=61 Score=16.82 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=18.4
Q ss_pred EEEecCcccCHHHHHHHHhhhc
Q psy12737 12 LLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 12 ~~i~fSa~Tts~~~q~~ie~kl 33 (60)
..+.++..+|...+.+.|+.+.
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~ 34 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKE 34 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
Confidence 4678889999999999998764
No 27
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=30.76 E-value=78 Score=18.07 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=28.9
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEc
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvD 54 (60)
.....+.|....++..+.+.+...+++- ..|+-+++++|
T Consensus 31 ~~~~aid~~~~~~~~~~~~~i~~~i~~~-------d~~~GVLiL~D 69 (130)
T 3gx1_A 31 ESGIALDMPLTVEVKAMYEKLKQTVVKL-------NPVKGVLILSD 69 (130)
T ss_dssp CCCEEEEECTTSCHHHHHHHHHHHHHTS-------CCTTCEEEEEC
T ss_pred cCEEEEEecCCCCHHHHHHHHHHHHHhh-------CCCCCEEEEEe
Confidence 4567789999999999998888888653 12455677776
No 28
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=29.80 E-value=10 Score=26.55 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=30.1
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDl 56 (60)
.|....+.|--..+++.+|+.+..-+..-.+. -.+..+++|+||+
T Consensus 143 ~y~~~~mPfGl~napa~fq~~m~~il~~~~~~----~~~~~v~~Y~DDI 187 (555)
T 1mu2_A 143 RYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKA----NKDVIIIQYMDDI 187 (555)
T ss_dssp EEEESBCCTTCTTHHHHHHHHHHHHHHHHHHH----CTTSEEEEETTEE
T ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHHhh----CCCcEEEEEecce
Confidence 35556678888888889998777665432211 1234688999997
No 29
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=29.78 E-value=42 Score=18.97 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=15.8
Q ss_pred ccCCeeeCCCCcEEEEEEccCCCC
Q psy12737 36 RTKDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 36 r~~~~~gpp~gk~~v~FvDDlNmP 59 (60)
...-++|++.++..|+..-|.+.|
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp 35 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCP 35 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCH
T ss_pred CCCCCcCCCCCCEEEEEEECCCCc
Confidence 345689999998765544455554
No 30
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=29.16 E-value=28 Score=21.42 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=27.2
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceeccCC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKD 39 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~ 39 (60)
.-...-+||.....|..+.+.+..++++|.+.
T Consensus 132 d~c~~GLnFade~EA~~F~~~V~~~l~~~~~~ 163 (169)
T 2ifs_A 132 DTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 163 (169)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHHHHCSCC
T ss_pred CCcEEEEeeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999987654
No 31
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=29.13 E-value=25 Score=21.31 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=25.9
Q ss_pred CcceEEEecCcccCHHHHHHHHhhhceeccCC
Q psy12737 8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKD 39 (60)
Q Consensus 8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~ 39 (60)
.-...-+||.....|..+.+.+..++++|.+.
T Consensus 115 d~c~~GLnFade~EA~~F~~~V~~~l~~~~~~ 146 (152)
T 1mke_A 115 DTCQVALNFANEEEAKKFRKAVTDLLGRRQRK 146 (152)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHHHHCC--
T ss_pred CCcEEEEeeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 33567899999999999999999999887654
No 32
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=27.57 E-value=43 Score=18.97 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=14.9
Q ss_pred cCCeeeCCCCcEEEEEEccCCCC
Q psy12737 37 TKDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 37 ~~~~~gpp~gk~~v~FvDDlNmP 59 (60)
..-++|++.++..|+..-|.+.|
T Consensus 18 ~~~~~G~~~a~v~i~~f~D~~Cp 40 (175)
T 1z6m_A 18 TGLHIGESNAPVKMIEFINVRCP 40 (175)
T ss_dssp SSEEESCTTCSEEEEEEECTTCH
T ss_pred CCcccCCCCCCeEEEEEECCCCc
Confidence 34578999888655544455665
No 33
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=26.75 E-value=22 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=24.4
Q ss_pred ceEEEecCcccCHHHHHHHHhhhceeccC
Q psy12737 10 VQLLVNFSSRTTSMDVQRNIESVVEKRTK 38 (60)
Q Consensus 10 ~~~~i~fSa~Tts~~~q~~ie~kl~kr~~ 38 (60)
...-+||++...+..+.+.++.+++...+
T Consensus 89 ~~~GL~F~se~eA~~F~~~v~~al~~l~~ 117 (118)
T 1xod_A 89 KKFGLTFQSPADARAFDRGIRRAIEDLSQ 117 (118)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999998887654
No 34
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=26.58 E-value=32 Score=21.96 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=9.9
Q ss_pred CcEEEEEEccCC
Q psy12737 46 DKKLILFIDDLN 57 (60)
Q Consensus 46 gk~~v~FvDDlN 57 (60)
++++|++|||+.
T Consensus 137 ~~~~llvlDe~~ 148 (412)
T 1w5s_A 137 NHYLLVILDEFQ 148 (412)
T ss_dssp TCEEEEEEESTH
T ss_pred CCeEEEEEeCHH
Confidence 568899999974
No 35
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.98 E-value=1e+02 Score=18.74 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=22.6
Q ss_pred eEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCC
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLN 57 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlN 57 (60)
...++.+...+...+++.++.-.... .+.+.+++.|++|||+.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKK----LHLPPGKHKIVILDEAD 117 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBC----CCCCTTCCEEEEEESGG
T ss_pred EEEecCccccChHHHHHHHHHHHhcc----ccCCCCCceEEEEECcc
Confidence 34455444445556655554432111 11124567889999975
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=25.91 E-value=29 Score=22.37 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=9.0
Q ss_pred cEEEEEEccCC
Q psy12737 47 KKLILFIDDLN 57 (60)
Q Consensus 47 k~~v~FvDDlN 57 (60)
+..|+||||+.
T Consensus 105 ~~~vl~iDEid 115 (322)
T 1xwi_A 105 KPSIIFIDEID 115 (322)
T ss_dssp SSEEEEEETTT
T ss_pred CCcEEEeecHH
Confidence 45799999986
No 37
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.46 E-value=75 Score=16.16 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=17.6
Q ss_pred EEEecCcccCHHHHHHHHhhhc
Q psy12737 12 LLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 12 ~~i~fSa~Tts~~~q~~ie~kl 33 (60)
..+.++..+|...+.+.|+.+.
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~ 51 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASV 51 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 3567788899999999998763
No 38
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=24.99 E-value=1.2e+02 Score=19.39 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=33.5
Q ss_pred ccCcceEEEecCcccCHHHHHHHHhhhceeccCCeeeC----CCCcEEEEEEccC
Q psy12737 6 ACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGP----PPDKKLILFIDDL 56 (60)
Q Consensus 6 ~~~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gp----p~gk~~v~FvDDl 56 (60)
++.|..+.|.+-..-+-.-+.+.|.+++- -.|-| ..+.+..+||+|.
T Consensus 21 ~~~w~kv~I~~g~ky~k~~ll~~i~~~~~----~~f~p~~~~~~~~~~~ffV~~~ 71 (267)
T 3rw6_A 21 SKNWFKITIPYGRKYDKAWLLSMIQSKCS----VPFTPIEFHYENTRAQFFVEDA 71 (267)
T ss_dssp --CCEEEEETTGGGSCHHHHHHHHHHTCS----SCCCCEEEEEETTEEEEEESCH
T ss_pred cCCeEEEEecCccccCHHHHHHHHHHhCC----CCcEeEEEEEeCCEEEEEeCCh
Confidence 34577788888888888889999988762 33434 3466788999884
No 39
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=24.70 E-value=48 Score=19.15 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=13.4
Q ss_pred eeeCCCCcEEEEEEccCCCC
Q psy12737 40 VFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 40 ~~gpp~gk~~v~FvDDlNmP 59 (60)
.+|++.++..|+..-|.+.|
T Consensus 8 ~~~~~~a~~~vv~f~D~~Cp 27 (147)
T 3gv1_A 8 KEVRGNGKLKVAVFSDPDCP 27 (147)
T ss_dssp EEEETTCCEEEEEEECTTCH
T ss_pred eeecCCCCEEEEEEECCCCh
Confidence 56778787766555566665
No 40
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=24.20 E-value=57 Score=20.04 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=15.3
Q ss_pred ccCCeeeCCCCcEEEEEEccCCCC
Q psy12737 36 RTKDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 36 r~~~~~gpp~gk~~v~FvDDlNmP 59 (60)
...-.+|++.++..|+..-|.++|
T Consensus 87 ~~~i~~G~~~ak~~v~~F~D~~Cp 110 (241)
T 1v58_A 87 SHWLLDGKKDAPVIVYVFADPFCP 110 (241)
T ss_dssp SCCEEESCTTCSEEEEEEECTTCH
T ss_pred CCCceECCCCCCeEEEEEECCCCh
Confidence 334568999888755544455665
No 41
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=24.17 E-value=18 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=29.9
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccC
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDl 56 (60)
|....+.|--..+++.+|+.+..-+..-.+. -.+..+++|+||+
T Consensus 146 y~~~~mPfGl~nap~~fq~~m~~il~~~~~~----~~~~~v~~Y~DDI 189 (557)
T 2zd1_A 146 YQYNVLPQGWKGSPAIFQSSMTKILEPFAAQ----NPDIVIYQYMDDL 189 (557)
T ss_dssp EEESBCCTTCTTHHHHHHHHHHHHHHHHHHT----CTTEEEEEETTEE
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHhhhc----CCCceEEEEecCE
Confidence 4556678888888899998877666543222 1234578899997
No 42
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=22.79 E-value=57 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.7
Q ss_pred CeeeCCCCcEEEEEEccCCCC
Q psy12737 39 DVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 39 ~~~gpp~gk~~v~FvDDlNmP 59 (60)
.++|+|.++..|+-.-|.++|
T Consensus 8 ~~~G~~~a~vtivef~D~~Cp 28 (205)
T 3gmf_A 8 HLLGNPAAKLRLVEFVSYTCP 28 (205)
T ss_dssp EEESCTTCSEEEEEEECTTCH
T ss_pred ceecCCCCCeEEEEEECCCCH
Confidence 478999888655555566766
No 43
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=22.10 E-value=85 Score=15.55 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.9
Q ss_pred eEEEecCcccCHHHHHHHHhhhc
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
...+.++..+|...+.+.|+.+.
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 34577889999999999998865
No 44
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A
Probab=21.87 E-value=43 Score=20.34 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=11.4
Q ss_pred CcEEEE--EEccCCCCC
Q psy12737 46 DKKLIL--FIDDLNMPQ 60 (60)
Q Consensus 46 gk~~v~--FvDDlNmP~ 60 (60)
||++|+ -+|...||+
T Consensus 109 GKq~Vvvl~cDN~HMpe 125 (144)
T 2fzp_A 109 GKQAVVVMACENQHMGD 125 (144)
T ss_dssp TSSEEEEEGGGCTTSCT
T ss_pred CCceEEEEecccCcCCc
Confidence 888765 568888885
No 45
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=21.86 E-value=63 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=15.1
Q ss_pred ccCCeeeCCCCcEEEEEEccCCCC
Q psy12737 36 RTKDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 36 r~~~~~gpp~gk~~v~FvDDlNmP 59 (60)
...-++|++.++..|+..-|.++|
T Consensus 76 ~~~~~~g~~~~k~~vv~F~d~~Cp 99 (216)
T 1eej_A 76 KEMIVYKAPQEKHVITVFTDITCG 99 (216)
T ss_dssp GGSEEECCTTCCEEEEEEECTTCH
T ss_pred hcCeeecCCCCCEEEEEEECCCCH
Confidence 345678988888765544455554
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=21.36 E-value=31 Score=22.50 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=9.0
Q ss_pred cEEEEEEccCC
Q psy12737 47 KKLILFIDDLN 57 (60)
Q Consensus 47 k~~v~FvDDlN 57 (60)
+.+|+||||+.
T Consensus 143 ~~~vl~iDEid 153 (355)
T 2qp9_X 143 KPSIIFIDQVD 153 (355)
T ss_dssp SSEEEEEECGG
T ss_pred CCeEEEEechH
Confidence 45799999986
No 47
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.08 E-value=91 Score=15.48 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.1
Q ss_pred eEEEecCcccCHHHHHHHHhhhc
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
...+.++..+|...+.+.|+.+.
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 15 TIILEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHH
Confidence 35678889999999999998865
No 48
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=20.94 E-value=20 Score=16.48 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=15.6
Q ss_pred CcccCHHHHHHHHhhhceeccCCeeeCC
Q psy12737 17 SSRTTSMDVQRNIESVVEKRTKDVFGPP 44 (60)
Q Consensus 17 Sa~Tts~~~q~~ie~kl~kr~~~~~gpp 44 (60)
|.+-.....|+.|+--+.-++++-+-||
T Consensus 3 SkyLe~~aakdFv~WL~ngk~~~~~p~~ 30 (31)
T 3c5t_B 3 SKQMEEEAVRLFIEWLKNGGPSSGAPPP 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGC-----
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3444566788888887776666655444
No 49
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=20.92 E-value=68 Score=19.22 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCCCC
Q psy12737 22 SMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 22 s~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlNmP 59 (60)
...+++.+.. ++ ...-++|++.++..|+-.-|.++|
T Consensus 64 ~~~~~~~~~~-l~-~~~~~~g~~~~k~~vv~F~d~~Cp 99 (211)
T 1t3b_A 64 GKILVDKLNS-YK-DEMIVYPAKNEKHVVTVFMDITCH 99 (211)
T ss_dssp HHHHHHHHHT-TG-GGSEEECCTTCSEEEEEEECTTCH
T ss_pred hHHHHhhhhh-cc-ccceEecCCCCCEEEEEEECCCCH
Confidence 3334444443 43 244567888887655433444554
No 50
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1
Probab=20.92 E-value=56 Score=19.49 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.3
Q ss_pred CCcEEEEEEccCC
Q psy12737 45 PDKKLILFIDDLN 57 (60)
Q Consensus 45 ~gk~~v~FvDDlN 57 (60)
.|...++||||-|
T Consensus 32 ~~e~FeI~V~Dpd 44 (131)
T 1nyn_A 32 ENTDLIVFAASEE 44 (131)
T ss_dssp SSSEEEEEESCHH
T ss_pred CCCeEEEEECCHH
Confidence 4688999998754
No 51
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=20.67 E-value=1.3e+02 Score=17.30 Aligned_cols=41 Identities=10% Similarity=0.213 Sum_probs=28.5
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEc
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvD 54 (60)
.....+.|....++..+.+.+...+++..- ..|+-+++++|
T Consensus 31 ~~~~aid~~~~~~~~~~~~~i~~~i~~~~~-----d~g~GVLiL~D 71 (139)
T 3gdw_A 31 SIGTAMNMPLTMEVQTMYEQLRNQVITQKE-----SLNNGILLLTD 71 (139)
T ss_dssp CCCEEEEECTTSCHHHHHHHHHHHHHTSTG-----GGTTCEEEEEC
T ss_pred ccEEEEEccCCCCHHHHHHHHHHHHHhhcC-----CCCCCEEEEEe
Confidence 456678999999999999988888865210 01345666765
No 52
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=20.59 E-value=15 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=29.2
Q ss_pred cceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccC
Q psy12737 9 AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56 (60)
Q Consensus 9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDl 56 (60)
|....+.|--..+++.+|+.+..-+..-.+. + .+..+++|+||+
T Consensus 144 y~~~vmPfGl~nsPa~fq~~m~~il~~~~~~-~---~~~~v~vY~DDI 187 (428)
T 2zd1_B 144 YQYNVLPQGWKGSPAIFQSSMTKILEPFKKQ-N---PDIVIYQYMDDL 187 (428)
T ss_dssp EEESBCCTTCTHHHHHHHHHHHHHHHHHHHH-C---TTCEEEEETTEE
T ss_pred EEEEeeCCCCcchHHHHHHHHHHHHHHHhhc-C---CCceEEEEecce
Confidence 4556677888888888998777666432221 1 233578899997
No 53
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=20.58 E-value=86 Score=15.05 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.9
Q ss_pred eEEEecCcccCHHHHHHHHhhhc
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
...+.++..+|-..+.+.|+.+.
T Consensus 12 ~~~i~v~~~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 12 TITLEVEPSDTIENVKAKIQDKE 34 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHH
Confidence 34678889999999999998765
No 54
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=20.47 E-value=1e+02 Score=15.73 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=17.8
Q ss_pred EEEecCcccCHHHHHHHHhhhc
Q psy12737 12 LLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 12 ~~i~fSa~Tts~~~q~~ie~kl 33 (60)
..+.++..+|...+.+.|+.+.
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~ 39 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASV 39 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 3567788999999999998764
No 55
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=20.41 E-value=93 Score=15.38 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=18.3
Q ss_pred eEEEecCcccCHHHHHHHHhhhc
Q psy12737 11 QLLVNFSSRTTSMDVQRNIESVV 33 (60)
Q Consensus 11 ~~~i~fSa~Tts~~~q~~ie~kl 33 (60)
...+..+..+|-..+.+.|+.+.
T Consensus 16 ~~~~~v~~~~tV~~lK~~i~~~~ 38 (79)
T 3phx_B 16 SSTYEVRLTQTVAHLKQQVSGLE 38 (79)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHH
T ss_pred EEEEEECCcChHHHHHHHHHhhc
Confidence 34578889999999999998764
No 56
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=20.28 E-value=70 Score=19.11 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=15.6
Q ss_pred CCeeeCCCCcEEEEEEccCCCC
Q psy12737 38 KDVFGPPPDKKLILFIDDLNMP 59 (60)
Q Consensus 38 ~~~~gpp~gk~~v~FvDDlNmP 59 (60)
.-++|+|.++.-|+..-|.++|
T Consensus 21 ~~~~G~~~a~vtvvef~D~~CP 42 (202)
T 3gha_A 21 QPVLGKDDAPVTVVEFGDYKCP 42 (202)
T ss_dssp SCEESCTTCSEEEEEEECTTCH
T ss_pred CceecCCCCCEEEEEEECCCCh
Confidence 4588999888766655566665
No 57
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.23 E-value=57 Score=15.17 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=23.0
Q ss_pred EEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEc
Q psy12737 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54 (60)
Q Consensus 12 ~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvD 54 (60)
+.|......+..+-+++.+. +..--...+|.|.....|.|.|
T Consensus 6 i~i~~~~g~s~e~k~~l~~~-l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSE-VTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHH-HHHHHHHHHCCCGGGCEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHH-HHHHHHHHhCcCcccEEEEEEE
Confidence 34454445566655554433 3333345667777777666654
No 58
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=20.22 E-value=74 Score=19.33 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=13.6
Q ss_pred hceeccCCeeeCCCCcEEEEEEccCC
Q psy12737 32 VVEKRTKDVFGPPPDKKLILFIDDLN 57 (60)
Q Consensus 32 kl~kr~~~~~gpp~gk~~v~FvDDlN 57 (60)
-|.+...+. +-+.+.+ +|+||+|
T Consensus 48 aL~~~~~d~-~~~~pe~--i~l~din 70 (145)
T 2lez_A 48 TLKSTMPDR-GAPLPEN--IILDDMD 70 (145)
T ss_dssp HHHHHSSSS-SSCCCSE--EEEEEET
T ss_pred HHHHhccCC-CCCCcce--EEEeccC
Confidence 344555664 5555556 4777776
No 59
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=20.20 E-value=40 Score=19.06 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=8.5
Q ss_pred CCCcEEEEEEccC
Q psy12737 44 PPDKKLILFIDDL 56 (60)
Q Consensus 44 p~gk~~v~FvDDl 56 (60)
..||+ |+.|||+
T Consensus 81 ~~gk~-VllVDDv 92 (153)
T 1vdm_A 81 LKDKR-VVIVDDV 92 (153)
T ss_dssp CBTCE-EEEEEEE
T ss_pred CCCCE-EEEEecc
Confidence 35666 6779996
Done!