RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12737
         (60 letters)



>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
            cytoplasmic; motor protein, AAA+ protein, ASCE protein,
            P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
            japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
          Length = 2695

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 14   VNFSSRTTSMDVQRNIESVVEKRTKD---VFGPPPD-KKLILFIDDLNMPQ 60
            +NFS  TT+  +   +       T        P  D K L+LF D++N+P+
Sbjct: 1299 INFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPK 1349


>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score = 63.4 bits (154), Expect = 4e-14
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 12   LLVNFSSRTTSMDVQRNIESVVEKRT----KDVFGPPPD-KKLILFIDDLNMPQ 60
            + +NFSS TT   + +  +   E +     + V  P    K L++F D++N+P 
Sbjct: 1334 VSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS 1387


>3qsq_A Capsid polyprotein; receptor binding domain, astrovirus capsid,
           viral protein; 1.80A {Human astrovirus 8}
          Length = 241

 Score = 26.5 bits (57), Expect = 0.44
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 4   NFACGAVQLLVNFSSRT---------TSMDVQRNIESVVEKRTKDVFGPPPDKKLILFID 54
            F  G   LL +               + ++  NI   V+     +  PPP    + F  
Sbjct: 168 QFTQGKWYLLTSTVMHDGPTSSGWVWMNQELTNNIAYRVDPGMMYLITPPPAASQLYFEL 227

Query: 55  DLNMPQ 60
              +PQ
Sbjct: 228 HTVLPQ 233


>1jdh_A Beta-catenin; beta-catenin, protein-protein complex,
          transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1
          PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A
          1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A
          1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
          Length = 529

 Score = 25.1 bits (55), Expect = 1.6
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 6  ACGAVQLLVNFSSRTTSMDVQRN 28
          +   V  +V     T  ++  R 
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARC 79


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 24.7 bits (53), Expect = 1.9
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 16/54 (29%)

Query: 9   AVQLLVNFSSRTTSMDVQRNIE----------SVVEKRTKDVFGPPPDKKLILF 52
           A+Q  VN+SS      V  + +          S +E            KK ++ 
Sbjct: 119 AIQ--VNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDT----KQKGKKFLVI 166


>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
           horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
          Length = 416

 Score = 24.7 bits (54), Expect = 2.2
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 27  RNIESVVEKRTKDVFGPPPDKKLILFI 53
             ++     R  + F   P+K +I  +
Sbjct: 211 VELKQTEILRILERFDVDPEKPIITQV 237


>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
           rerio}
          Length = 780

 Score = 24.6 bits (53), Expect = 2.3
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 6   ACGAVQLLVNFSSRTTSMDVQRN 28
           +   V  +V     T  ++  R 
Sbjct: 190 SPQMVSAIVRTMQNTNDVETARC 212


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.4 bits (52), Expect = 2.6
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 14  VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
           VN    TT ++   ++  +     + +F      +L +F    ++P
Sbjct: 350 VNCDKLTTIIES--SLNVLEPAEYRKMF-----DRLSVFPPSAHIP 388


>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
           protein transport, armadillo repeats; 2.2A {Homo
           sapiens} PDB: 3tj3_A
          Length = 450

 Score = 24.5 bits (53), Expect = 2.8
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 5   FACGAVQLLVNFSSRTTSMDVQRNI 29
             C  +  L+   S+   + + RN 
Sbjct: 146 LDCNILPPLLQLFSKQNRLTMTRNA 170


>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative
          ABC transporter, porphyromonas gingiVal structural
          genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP:
          c.94.1.3
          Length = 143

 Score = 23.0 bits (49), Expect = 7.8
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 16 FSSRTTSMDVQRNIESVVEKRTKD 39
          +  +     V  +I  ++     D
Sbjct: 73 YGYKQLPASVSNHISRILSDYLSD 96


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 847,409
Number of extensions: 34062
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 10
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)