RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12737
         (60 letters)



>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 116

 Score = 25.3 bits (55), Expect = 0.39
 Identities = 4/39 (10%), Positives = 16/39 (41%)

Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILF 52
            FS   ++ D+ +++        ++     P+   +++
Sbjct: 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69


>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 304

 Score = 24.0 bits (51), Expect = 1.2
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 21 TSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56
          T  ++   +  V   + +D++       L +  D +
Sbjct: 3  TKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRI 38


>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945
          {Porphyromonas gingivalis [TaxId: 837]}
          Length = 136

 Score = 23.2 bits (50), Expect = 2.0
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 16 FSSRTTSMDVQRNIESVVEKRTKD 39
          +  +     V  +I  ++     D
Sbjct: 66 YGYKQLPASVSNHISRILSDYLSD 89


>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
          {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 23.1 bits (49), Expect = 2.9
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 8/43 (18%)

Query: 14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDL 56
          VN +SR     + +  + V+            D +L     D 
Sbjct: 2  VNLASRNAGF-INKRFDGVLAS-------ELADPQLYKTFTDA 36


>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri
          [TaxId: 623]}
          Length = 59

 Score = 22.3 bits (47), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 11 QLLVNFSSRTTSMDVQRNIESVVEKRTKDV 40
          QLL  + S+ +   + RN +S   K  KDV
Sbjct: 26 QLLAEYQSKLSEYTLYRNAQSNTVKVIKDV 55


>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 434

 Score = 22.8 bits (47), Expect = 4.1
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 7  CGAVQLLVNFSSRTTSMDVQRN 28
           G +   V+F  +T    +Q  
Sbjct: 55 AGLIPKFVSFLGKTDCSPIQFE 76


>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia
          pseudomallei [TaxId: 28450]}
          Length = 84

 Score = 22.2 bits (47), Expect = 4.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 12 LLVNFSSRTTSMDVQRNIESVVEKRTKDV 40
           L N+    +  ++ RN +S   K  KD+
Sbjct: 52 ALANYQMIMSEYNLYRNAQSSAVKSMKDI 80


>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 152

 Score = 21.7 bits (45), Expect = 8.9
 Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 13 LVNFSSRTTSMDVQRNIESVVEKRTKD 39
          L N   RT +M + R  E  + +    
Sbjct: 5  LGNLVQRTRAM-LFRFAEGRIPEPVAG 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 204,868
Number of extensions: 6470
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 9
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)