Query psy12738
Match_columns 173
No_of_seqs 153 out of 328
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 18:24:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2729|consensus 100.0 4.1E-47 8.9E-52 299.8 6.0 110 1-132 28-137 (137)
2 PLN00174 predicted protein; Pr 100.0 6.2E-43 1.3E-47 281.8 7.2 103 4-128 36-139 (160)
3 PF03311 Cornichon: Cornichon 100.0 3.3E-40 7.2E-45 257.2 4.8 102 1-124 27-128 (128)
4 KOG2729|consensus 99.8 3.5E-20 7.6E-25 146.9 -0.5 60 113-172 3-62 (137)
5 PF03311 Cornichon: Cornichon 99.6 3.8E-17 8.2E-22 127.6 -0.4 54 119-172 8-61 (128)
6 PLN00174 predicted protein; Pr 99.4 3.6E-14 7.8E-19 115.1 1.1 37 136-172 31-67 (160)
7 COG4781 Membrane domain of mem 66.2 10 0.00022 34.7 4.6 45 57-111 166-210 (340)
8 PF07584 BatA: Aerotolerance r 47.9 56 0.0012 22.8 5.0 15 105-119 54-68 (77)
9 PF00902 TatC: Sec-independent 40.3 1.5E+02 0.0032 24.5 7.1 26 55-80 65-90 (215)
10 TIGR00945 tatC Twin arginine t 35.1 2E+02 0.0043 24.0 7.2 23 57-79 63-85 (215)
11 CHL00182 tatC Sec-independent 32.3 2.1E+02 0.0045 24.7 7.0 24 57-80 84-107 (249)
12 TIGR01912 TatC-Arch Twin argin 31.6 2.3E+02 0.005 24.2 7.1 25 56-80 70-94 (237)
13 COG0805 TatC Sec-independent p 31.3 1.9E+02 0.0041 25.4 6.6 24 57-80 77-100 (255)
14 PRK10921 twin-arginine protein 31.1 2.3E+02 0.0049 24.6 7.0 24 56-79 73-96 (258)
15 PF10914 DUF2781: Protein of u 27.5 1.3E+02 0.0028 23.6 4.6 84 39-125 40-142 (150)
16 PF14316 DUF4381: Domain of un 25.6 1.2E+02 0.0026 23.6 4.1 25 56-80 20-44 (146)
17 PF10840 DUF2645: Protein of u 24.8 38 0.00082 26.2 1.0 33 48-80 62-99 (103)
18 PF15190 DUF4583: Domain of un 22.3 1.3E+02 0.0028 24.2 3.6 25 101-125 2-26 (128)
No 1
>KOG2729|consensus
Probab=100.00 E-value=4.1e-47 Score=299.76 Aligned_cols=110 Identities=48% Similarity=0.862 Sum_probs=107.4
Q ss_pred CeeecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 1 ii~~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
+||+||||+||+||+|+|||+|++|+||++.|+++|++ ++++|||+++++|+|+++||+++|.+|
T Consensus 28 vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGl---------------fLl~g~W~~fllnlP~l~y~~~~y~~r 92 (137)
T KOG2729|consen 28 VICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLL---------------FLLTGHWFMFLLNLPLLAYNAWLYMKR 92 (137)
T ss_pred HHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHH---------------HHHHHHHHHHHHccHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCCCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12738 81 PVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSF 132 (173)
Q Consensus 81 ~~~~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly~LI~alL~f 132 (173)
| |+|||||||| +|++||||+|+|+|||+++||+++|+||.+++++
T Consensus 93 ~-----~l~D~TeI~n--~L~~~~k~~~~KL~fyll~FF~yly~mI~slv~~ 137 (137)
T KOG2729|consen 93 P-----HLYDPTEIFN--TLSSEKKERWIKLAFYLLSFFYYLYWMIYSLVSS 137 (137)
T ss_pred C-----cccCHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 9999999999 9999999999999999999999999999998753
No 2
>PLN00174 predicted protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=281.76 Aligned_cols=103 Identities=25% Similarity=0.460 Sum_probs=101.0
Q ss_pred ecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcccCC
Q psy12738 4 FDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVM 83 (173)
Q Consensus 4 ~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~~~~ 83 (173)
+||||+||+||+|+|||+|++|+||+++|+++|++ ++++|+|+++++|+|+++||+++|.+|+
T Consensus 36 lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lL---------------fLltG~W~~fLLNlPll~Yhv~~y~~r~-- 98 (160)
T PLN00174 36 LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIA---------------FVIRGWWIVGFLNFPFIFYNFAQWYEGK-- 98 (160)
T ss_pred HHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 79999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred CCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy12738 84 SGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLY-GSEFS 128 (173)
Q Consensus 84 ~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly-~LI~a 128 (173)
|++||||||| +|++||||||+|+|||+++||+++| ||+.+
T Consensus 99 ---hL~D~TeIfn--~L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~ 139 (160)
T PLN00174 99 ---HQLDSAQIFN--VLSRELRVIKAKSAFFIIIVIYTIWEWMIWV 139 (160)
T ss_pred ---CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999 6999999999999999999999999 99976
No 3
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=100.00 E-value=3.3e-40 Score=257.19 Aligned_cols=102 Identities=47% Similarity=0.908 Sum_probs=99.4
Q ss_pred CeeecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 1 ii~~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
+|++||||+||+||+|+|+|+||+|+||+++|++++++ ++++|+|+++++|+|+++||+++|.+|
T Consensus 27 ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l---------------~ll~g~w~~~llnlPl~~y~~~~~~~~ 91 (128)
T PF03311_consen 27 IICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLL---------------FLLTGHWFLFLLNLPLLAYHIYRYFRR 91 (128)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCCCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12738 81 PVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYG 124 (173)
Q Consensus 81 ~~~~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly~ 124 (173)
+ |++||||||| +|+++|||+++|++||++.||+++||
T Consensus 92 ~-----~l~D~T~If~--~L~~~kk~~~iKl~~yll~ff~yly~ 128 (128)
T PF03311_consen 92 Q-----HLYDPTEIFN--QLKREKKESFIKLGFYLLLFFYYLYR 128 (128)
T ss_pred C-----ccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 9999999999 69999999999999999999999986
No 4
>KOG2729|consensus
Probab=99.77 E-value=3.5e-20 Score=146.87 Aligned_cols=60 Identities=40% Similarity=0.703 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccceeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738 113 FYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF 172 (173)
Q Consensus 113 fyll~Ffy~Ly~LI~alL~ffa~~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~ 172 (173)
+-...+++.+..+.++.+.++++|++|+++|||+||+||+|+|||+|++|+||+++||++
T Consensus 3 ~~~~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~K 62 (137)
T KOG2729|consen 3 FTFAAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLL 62 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHH
Confidence 345567788888889999999999999999999999999999999999999999999975
No 5
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=99.62 E-value=3.8e-17 Score=127.60 Aligned_cols=54 Identities=41% Similarity=0.704 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccccceeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738 119 FYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF 172 (173)
Q Consensus 119 fy~Ly~LI~alL~ffa~~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~ 172 (173)
.+.+..++.+++.+.++|++++++|||+||+||+|+|+|+||+|+||+++|+++
T Consensus 8 ~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l 61 (128)
T PF03311_consen 8 LWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFL 61 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667888899999999999999999999999999999999999999974
No 6
>PLN00174 predicted protein; Provisional
Probab=99.42 E-value=3.6e-14 Score=115.13 Aligned_cols=37 Identities=38% Similarity=0.731 Sum_probs=33.3
Q ss_pred eeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738 136 LTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF 172 (173)
Q Consensus 136 ~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~ 172 (173)
+.--.+||||+||+||+|+|+|+|+||+||+++||++
T Consensus 31 ~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l 67 (160)
T PLN00174 31 YTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFL 67 (160)
T ss_pred chHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHH
Confidence 3334689999999999999999999999999999985
No 7
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=66.20 E-value=10 Score=34.69 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcccCCCCcceeccceeecHHhHhHHHHHHHHHH
Q psy12738 57 TEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKL 111 (173)
Q Consensus 57 ~~~w~~~~~nlp~~~y~~~~y~~~~~~~~~~l~D~T~I~n~~~L~~~~k~~~iKL 111 (173)
+|+|+..++....+.-+.+....-| --|.|+.++++..||+|-|.
T Consensus 166 ~~~~l~~~~l~liFyis~RLif~LP----------l~i~~~~tv~~Air~Swk~T 210 (340)
T COG4781 166 WGWWLLILFLALIFYISVRLIFALP----------LIILDQLTVREAIRESWKKT 210 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHhhhhHHHHHHHHHHHH
Confidence 6777777777777666666666555 34777788899999998765
No 8
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=47.92 E-value=56 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy12738 105 REGWIKLAFYLLSFF 119 (173)
Q Consensus 105 k~~~iKLafyll~Ff 119 (173)
+..+.++...+++..
T Consensus 54 ~~~~l~l~L~lLal~ 68 (77)
T PF07584_consen 54 LRRHLLLLLRLLALA 68 (77)
T ss_pred HhhhHHHHHHHHHHH
Confidence 445555555554433
No 9
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=40.31 E-value=1.5e+02 Score=24.49 Aligned_cols=26 Identities=12% Similarity=0.283 Sum_probs=21.9
Q ss_pred eechhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 55 ISTEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 55 l~~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
+-..-|+...++.|...|.+|++.+-
T Consensus 65 lk~s~~~~~~~~~P~~~yq~w~Fi~P 90 (215)
T PF00902_consen 65 LKLSFFLGLIISLPYILYQIWAFIAP 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556788999999999999999974
No 10
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=35.15 E-value=2e+02 Score=23.98 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhc
Q psy12738 57 TEGWIKLAFYLLSFFYYLYGYRN 79 (173)
Q Consensus 57 ~~~w~~~~~nlp~~~y~~~~y~~ 79 (173)
..-+..+.+..|...|.+|++.+
T Consensus 63 ~s~~~g~~~~~P~i~yqiw~Fi~ 85 (215)
T TIGR00945 63 LSLIVGIILSSPVILYQIWAFIL 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44557888999999999999997
No 11
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=32.28 E-value=2.1e+02 Score=24.69 Aligned_cols=24 Identities=8% Similarity=-0.052 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 57 TEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 57 ~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
..-+..+.+..|...|.+|++.+-
T Consensus 84 ls~~~g~~~a~P~i~yqiw~Fi~P 107 (249)
T CHL00182 84 ISFYTGLLISSPFIIYQIILFILP 107 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888999999999999973
No 12
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=31.59 E-value=2.3e+02 Score=24.18 Aligned_cols=25 Identities=16% Similarity=0.176 Sum_probs=20.6
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 56 STEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 56 ~~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
-..-+..+.+..|...|.+|++.+-
T Consensus 70 k~s~~~g~~~~~P~i~yqiw~Fi~P 94 (237)
T TIGR01912 70 KSAFFIGLLLASPVLAYEAYRFIKP 94 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455678888999999999999973
No 13
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=31.31 E-value=1.9e+02 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 57 TEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 57 ~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
..-+..+++.+|.++|.+|++.+.
T Consensus 77 ~a~~~gl~~a~P~i~yq~w~FiaP 100 (255)
T COG0805 77 LALFAGLLLALPVILYQLWAFIAP 100 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344567888999999999999964
No 14
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=31.07 E-value=2.3e+02 Score=24.58 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.2
Q ss_pred echhHHHHHHHHHHHHHHHHhhhc
Q psy12738 56 STEGWIKLAFYLLSFFYYLYGYRN 79 (173)
Q Consensus 56 ~~~~w~~~~~nlp~~~y~~~~y~~ 79 (173)
-..-+..+.+..|..+|.+|++..
T Consensus 73 k~sl~~g~~la~P~ilyqiw~Fi~ 96 (258)
T PRK10921 73 KLTFMVSLILSAPVILYQVWAFIA 96 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999999997
No 15
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=27.53 E-value=1.3e+02 Score=23.59 Aligned_cols=84 Identities=23% Similarity=0.357 Sum_probs=52.2
Q ss_pred hcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcccCCCCcceecccee----------------ec---HHh
Q psy12738 39 YVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSI----------------MN---ADT 99 (173)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~~~~~~~~l~D~T~I----------------~n---~~~ 99 (173)
|+.+-..++-.--|.+.-..-|+.+++-+|+++|.+|...++ ++....++.-+ +. ...
T Consensus 40 yi~~~~D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~~l~~~---~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~ 116 (150)
T PF10914_consen 40 YIATYNDPLMADPPPWFKSFVWIELFFQLPFFFYAIYALLKG---GSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPD 116 (150)
T ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444444444456666778888999999999999999987 22345554422 22 233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12738 100 LNKCQREGWIKLAFYLLSFFYYLYGS 125 (173)
Q Consensus 100 L~~~~k~~~iKLafyll~Ffy~Ly~L 125 (173)
+...+|+.+.-++.|+.-+++-+...
T Consensus 117 ~~~~~~~~~~l~~~Y~Py~liP~~~~ 142 (150)
T PF10914_consen 117 LSSPQKARWLLLAIYLPYLLIPLLMA 142 (150)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777776555544443
No 16
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=25.59 E-value=1.2e+02 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=17.5
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 56 STEGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 56 ~~~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
--|+|+.+++-+.++++.++...+|
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r~ 44 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWRR 44 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888777776666665544
No 17
>PF10840 DUF2645: Protein of unknown function (DUF2645); InterPro: IPR022553 This family of proteins appears to be restricted to Enterobacteriaceae. Some members in the family are annotated as inner membrane protein YjeO. However no function is currently known.
Probab=24.81 E-value=38 Score=26.15 Aligned_cols=33 Identities=27% Similarity=0.708 Sum_probs=27.8
Q ss_pred ccccccceec-----hhHHHHHHHHHHHHHHHHhhhcc
Q psy12738 48 TVFIPQYIST-----EGWIKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 48 ~~~~~~~l~~-----~~w~~~~~nlp~~~y~~~~y~~~ 80 (173)
|.++|-++.. -+|..-+..+-+++|+.|++.-|
T Consensus 62 ~l~iP~fi~~~~~k~ks~~~~~~~i~i~~Y~~W~Ff~R 99 (103)
T PF10840_consen 62 PLFIPFFIALFKKKFKSLFRYIVYIAILFYWLWRFFIR 99 (103)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 88888899999999999999876
No 18
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=22.34 E-value=1.3e+02 Score=24.17 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12738 101 NKCQREGWIKLAFYLLSFFYYLYGS 125 (173)
Q Consensus 101 ~~~~k~~~iKLafyll~Ffy~Ly~L 125 (173)
|.+||-||+-++.|+++-++..|.+
T Consensus 2 nFRQRmgWv~v~lyLl~s~~~~yyv 26 (128)
T PF15190_consen 2 NFRQRMGWVGVSLYLLASAAAVYYV 26 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998766655553
Done!