Query psy12738
Match_columns 173
No_of_seqs 153 out of 328
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:24:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 13.3 2.1E+02 0.0071 23.5 4.3 29 57-91 67-95 (249)
2 1n0x_P B2.1 peptide, immunoglo 8.6 1E+02 0.0035 17.3 0.6 10 139-148 5-14 (26)
3 1l6x_B Minimized B-domain of p 7.4 80 0.0027 19.1 -0.2 14 98-111 16-29 (34)
4 4dy0_A GLIA-derived nexin; ser 6.9 74 0.0025 27.0 -0.8 18 146-163 122-139 (379)
5 1jb0_X Photosystem I subunit P 6.4 3.4E+02 0.012 16.3 2.2 24 52-75 7-32 (35)
6 1f0c_A ICE inhibitor; apoptosi 6.1 83 0.0028 25.9 -0.9 18 145-163 87-104 (305)
7 3ndd_A Alpha-1-antitrypsin; se 6.0 89 0.003 26.1 -0.8 18 146-163 130-147 (343)
8 3dy0_A N-terminus plasma serin 6.0 89 0.0031 26.1 -0.8 18 146-163 124-141 (336)
9 1dev_B SMAD anchor for recepto 5.7 1.7E+02 0.0058 18.2 0.6 13 12-24 7-19 (41)
10 4au2_A HSP47, serpin peptidase 5.5 97 0.0033 26.5 -0.9 18 146-163 127-144 (392)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=13.31 E-value=2.1e+02 Score=23.45 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcccCCCCcceecc
Q psy12738 57 TEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDP 91 (173)
Q Consensus 57 ~~~w~~~~~nlp~~~y~~~~y~~~~~~~~~~l~D~ 91 (173)
..-+..+.+..|...|.+|++..- |+|.-
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P------gLy~~ 95 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP------ALYSH 95 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT------TTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------cccHh
Confidence 455678889999999999999863 66653
No 2
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=8.61 E-value=1e+02 Score=17.25 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=7.2
Q ss_pred EEeccccccc
Q psy12738 139 IAFDELKVDY 148 (173)
Q Consensus 139 i~~~dLe~D~ 148 (173)
-+|||||+.-
T Consensus 5 ymfsdlenrc 14 (26)
T 1n0x_P 5 YMFSDLENRC 14 (26)
T ss_dssp EEEETTTTEE
T ss_pred hhhhHHHHHH
Confidence 3789999653
No 3
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=7.43 E-value=80 Score=19.09 Aligned_cols=14 Identities=43% Similarity=0.387 Sum_probs=11.6
Q ss_pred HhHhHHHHHHHHHH
Q psy12738 98 DTLNKCQREGWIKL 111 (173)
Q Consensus 98 ~~L~~~~k~~~iKL 111 (173)
+.|+.+||+++||-
T Consensus 16 ~nLtEeQrn~yI~s 29 (34)
T 1l6x_B 16 PNLNEEQRNAKIKS 29 (34)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHH
Confidence 46889999999874
No 4
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo sapiens} PDB: 4dy7_C
Probab=6.91 E-value=74 Score=27.02 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=15.9
Q ss_pred cccCChHHhhhcCCCchh
Q psy12738 146 VDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 146 ~D~~Np~d~~~~lN~lv~ 163 (173)
.|+-||-+..+.+|.||-
T Consensus 122 vdF~~~~~a~~~IN~wV~ 139 (379)
T 4dy0_A 122 VNFEDPASACDSINAWVK 139 (379)
T ss_dssp CCTTSHHHHHHHHHHHHH
T ss_pred eccCChHHHHHHHHHHHH
Confidence 588899999999999983
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=6.41 E-value=3.4e+02 Score=16.30 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=14.8
Q ss_pred ccceechhHHHHHH--HHHHHHHHHH
Q psy12738 52 PQYISTEGWIKLAF--YLLSFFYYLY 75 (173)
Q Consensus 52 ~~~l~~~~w~~~~~--nlp~~~y~~~ 75 (173)
|.+...-.|..+++ |....+|++.
T Consensus 7 p~y~frt~WalllLaINflVAayYFh 32 (35)
T 1jb0_X 7 PTYAFRTFWAVLLLAINFLVAAYYFA 32 (35)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666765544 7777777653
No 6
>1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor, serpin, viral protein; 2.26A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_A
Probab=6.14 E-value=83 Score=25.94 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=15.4
Q ss_pred ccccCChHHhhhcCCCchh
Q psy12738 145 KVDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 145 e~D~~Np~d~~~~lN~lv~ 163 (173)
..|+.|| +..+.+|.||-
T Consensus 87 ~vdF~~~-~a~~~IN~WV~ 104 (305)
T 1f0c_A 87 TVDFTDC-RTVDAINKCVD 104 (305)
T ss_dssp EECSSST-HHHHHHHHHHH
T ss_pred ccCCCCH-HHHHHHHHHHH
Confidence 4688899 99999999984
No 7
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A 1ezx_A 3t1p_A 2d26_A 1qmb_A
Probab=5.98 E-value=89 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=16.0
Q ss_pred cccCChHHhhhcCCCchh
Q psy12738 146 VDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 146 ~D~~Np~d~~~~lN~lv~ 163 (173)
.|+.||-+..+++|.||-
T Consensus 130 vdF~~~~~a~~~IN~wV~ 147 (343)
T 3ndd_A 130 VNFGDTEEAKKQINDYVE 147 (343)
T ss_dssp ECTTSHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 588899999999999984
No 8
>3dy0_A N-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_A* 2hi9_A*
Probab=5.96 E-value=89 Score=26.10 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=16.0
Q ss_pred cccCChHHhhhcCCCchh
Q psy12738 146 VDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 146 ~D~~Np~d~~~~lN~lv~ 163 (173)
.|+.||-+..+++|.||-
T Consensus 124 vdF~~~~~a~~~IN~wV~ 141 (336)
T 3dy0_A 124 TNFRDSAGAMKQINDYVA 141 (336)
T ss_dssp CCTTSHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHH
Confidence 688899999999999984
No 9
>1dev_B SMAD anchor for receptor activation; beta sheet, three-helix bundle, signaling protein; 2.20A {Homo sapiens} SCOP: j.64.1.1 PDB: 1mk2_B
Probab=5.73 E-value=1.7e+02 Score=18.20 Aligned_cols=13 Identities=38% Similarity=1.019 Sum_probs=10.0
Q ss_pred CChHHhhhcCCCc
Q psy12738 12 KNPIDQCNSLNPL 24 (173)
Q Consensus 12 ~NPid~c~~lN~l 24 (173)
.||+|-|+.+=++
T Consensus 7 NnPmEYCStiPP~ 19 (41)
T 1dev_B 7 NNPAEYCSTIPPL 19 (41)
T ss_dssp TCGGGTCBCSCHH
T ss_pred CCcchhhccCCcH
Confidence 6899999887553
No 10
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47), member 1, (collagen binding...; chaperone-peptide complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A 4au4_A 4awr_A 4au3_B
Probab=5.49 E-value=97 Score=26.47 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=15.9
Q ss_pred cccCChHHhhhcCCCchh
Q psy12738 146 VDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 146 ~D~~Np~d~~~~lN~lv~ 163 (173)
.|+.||-+..+.+|.||-
T Consensus 127 vdF~~~~~a~~~IN~WV~ 144 (392)
T 4au2_A 127 INFRDKRSALQSINEWAA 144 (392)
T ss_dssp ECTTSHHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHH
Confidence 588999999999999983
Done!