Query psy12738
Match_columns 173
No_of_seqs 153 out of 328
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 18:24:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 7.8 1.4E+02 0.01 15.7 2.4 23 52-74 1-25 (29)
2 d1nekd_ f.21.2.2 (D:) Succinat 4.2 3.6E+02 0.026 17.2 3.3 20 61-80 19-38 (113)
3 d2fuea1 c.108.1.10 (A:13-256) 4.1 53 0.0039 21.9 -1.2 16 149-164 229-244 (244)
4 d2dlka1 g.37.1.1 (A:8-37) Zinc 4.1 2.2E+02 0.016 15.1 1.6 14 93-106 10-24 (30)
5 d2uubr1 a.4.8.1 (R:19-88) Ribo 3.8 2.2E+02 0.016 17.6 1.9 20 4-23 8-28 (70)
6 d1fc2c_ a.8.1.1 (C:) Immunoglo 3.7 69 0.005 18.8 -0.8 18 94-111 12-29 (44)
7 d1deeg_ a.8.1.1 (G:) Immunoglo 3.3 93 0.0068 18.7 -0.5 14 98-111 13-26 (51)
8 d2qalr1 a.4.8.1 (R:19-73) Ribo 3.2 2.6E+02 0.019 16.3 1.7 16 8-23 1-16 (55)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 3.2 5.1E+02 0.037 15.2 4.7 28 98-125 33-60 (86)
10 g1jjo.1 e.1.1.1 (A:,C:,E:) Neu 3.1 93 0.0068 23.6 -0.8 18 146-163 79-96 (334)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.82 E-value=1.4e+02 Score=15.69 Aligned_cols=23 Identities=30% Similarity=0.571 Sum_probs=13.3
Q ss_pred ccceechhHHHHHH--HHHHHHHHH
Q psy12738 52 PQYISTEGWIKLAF--YLLSFFYYL 74 (173)
Q Consensus 52 ~~~l~~~~w~~~~~--nlp~~~y~~ 74 (173)
|.+.....|-.+++ |....+|++
T Consensus 1 pty~frt~wa~lllainflvaayyf 25 (29)
T d1jb0x_ 1 PTYAFRTFWAVLLLAINFLVAAYYF 25 (29)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566765554 666666654
No 2
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=3.6e+02 Score=17.21 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy12738 61 IKLAFYLLSFFYYLYGYRNR 80 (173)
Q Consensus 61 ~~~~~nlp~~~y~~~~y~~~ 80 (173)
++.++.+|+..|.++...+.
T Consensus 19 vSAv~l~~l~~~~~~~~~~~ 38 (113)
T d1nekd_ 19 ATAIVLTLYIIYMVGFFATS 38 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 36788899999998876654
No 3
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.14 E-value=53 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=12.9
Q ss_pred CChHHhhhcCCCchhh
Q psy12738 149 KNPIDQCNSLNPLVLP 164 (173)
Q Consensus 149 ~Np~d~~~~lN~lv~p 164 (173)
.||.|..+.++.+|+|
T Consensus 229 ~na~~~~k~~~~~~~~ 244 (244)
T d2fuea1 229 VSPQDTVQRCREIFFP 244 (244)
T ss_dssp SSHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHhcCC
Confidence 4888888888888877
No 4
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.06 E-value=2.2e+02 Score=15.06 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=9.8
Q ss_pred eee-cHHhHhHHHHH
Q psy12738 93 SIM-NADTLNKCQRE 106 (173)
Q Consensus 93 ~I~-n~~~L~~~~k~ 106 (173)
.|| ||.-|+.++|.
T Consensus 10 kifsnrqylnhh~ky 24 (30)
T d2dlka1 10 RIFSNRQYLNHHKKY 24 (30)
T ss_dssp CEESSHHHHHHHHHH
T ss_pred hhhccHHHHHhHHHH
Confidence 356 67778888775
No 5
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=3.85 E-value=2.2e+02 Score=17.58 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=14.0
Q ss_pred eccccc-ccCChHHhhhcCCC
Q psy12738 4 FDELKV-DYKNPIDQCNSLNP 23 (173)
Q Consensus 4 ~~dLe~-D~~NPid~c~~lN~ 23 (173)
..++|. ||+|+--+.+=+|+
T Consensus 8 ~~~~~~iDYKn~~lL~~Fis~ 28 (70)
T d2uubr1 8 LGEFDLRDYRNVEVLKRFLSE 28 (70)
T ss_dssp SCSCCTTCTTCHHHHGGGBCS
T ss_pred ccccCccCccCHHHHHHhcCC
Confidence 456664 99998777766665
No 6
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=3.71 E-value=69 Score=18.81 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=12.5
Q ss_pred eecHHhHhHHHHHHHHHH
Q psy12738 94 IMNADTLNKCQREGWIKL 111 (173)
Q Consensus 94 I~n~~~L~~~~k~~~iKL 111 (173)
|++--.|+..||.++|+.
T Consensus 12 il~lPNLne~Qrn~fI~S 29 (44)
T d1fc2c_ 12 ILHLPNLNEEQRNGFIQS 29 (44)
T ss_dssp HHTCSSSCTHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 333336889999998764
No 7
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=3.30 E-value=93 Score=18.70 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.0
Q ss_pred HhHhHHHHHHHHHH
Q psy12738 98 DTLNKCQREGWIKL 111 (173)
Q Consensus 98 ~~L~~~~k~~~iKL 111 (173)
..|+.+||.++|+.
T Consensus 13 pnl~eeQrn~fI~s 26 (51)
T d1deeg_ 13 PNLNEAQRNGFIQS 26 (51)
T ss_dssp SSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 36888999998874
No 8
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=2.6e+02 Score=16.31 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=8.6
Q ss_pred ccccCChHHhhhcCCC
Q psy12738 8 KVDYKNPIDQCNSLNP 23 (173)
Q Consensus 8 e~D~~NPid~c~~lN~ 23 (173)
|-||+|+--+.+=+|+
T Consensus 1 ~iDYKn~~lL~~Fis~ 16 (55)
T d2qalr1 1 EIDYKDIATLKNYITE 16 (55)
T ss_dssp CCCSSCHHHHGGGBCT
T ss_pred CCCcccHHHHHHHcCC
Confidence 3466666555544443
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.20 E-value=5.1e+02 Score=15.21 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=15.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12738 98 DTLNKCQREGWIKLAFYLLSFFYYLYGS 125 (173)
Q Consensus 98 ~~L~~~~k~~~iKLafyll~Ffy~Ly~L 125 (173)
++.++..++-..|+..|.+.++..+..+
T Consensus 33 ~~~~~~~~~~i~~~~~~~i~~i~~~~~L 60 (86)
T d2vv5a3 33 RKIDATVADFLSALVRYGIIAFTLIAAL 60 (86)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555665666666665555444433
No 10
>g1jjo.1 e.1.1.1 (A:,C:,E:) Neuroserpin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.13 E-value=93 Score=23.59 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.5
Q ss_pred cccCChHHhhhcCCCchh
Q psy12738 146 VDYKNPIDQCNSLNPLVL 163 (173)
Q Consensus 146 ~D~~Np~d~~~~lN~lv~ 163 (173)
.|+-||-+..+.+|+||-
T Consensus 79 vdF~~~~~~~~~IN~wv~ 96 (334)
T g1jjo.1 79 VDFSQNVAVANSINKWVE 96 (334)
T ss_dssp ECTTSHHHHHHHHHHHHH
T ss_pred EcCcChHHHHHHHHHHHH
Confidence 588899999999999874
Done!