RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12738
         (173 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.013
 Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 52/175 (29%)

Query: 25  VLPEYLAHAIFNHNYVG--NLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPV 82
           VL   L    F + Y+   ++       + Q   T   +     L+  +        RP 
Sbjct: 83  VLNLCLTE--FENCYLEGNDIHA-LAAKLLQENDTT--LVKTKELIKNYITARIMAKRPF 137

Query: 83  MSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFF--------YY-----LYGSEFSY 129
                     S      L +   EG  +L    +  F        Y+     LY +   Y
Sbjct: 138 DKK-----SNSA-----LFRAVGEGNAQL--VAI--FGGQGNTDDYFEELRDLYQT---Y 180

Query: 130 LSFFKDLTVIAFDELKVDYKNPIDQCNSL------------NPLVLP--EYLAHA 170
                DL   + + L    +  +D    +            NP   P  +YL   
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLNILEWLENPSNTPDKDYLLSI 234


>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl
           transferase, editosome, transferase/RNA binding protein
           complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4
           d.218.1.10 PDB: 2b51_A* 2b56_A*
          Length = 468

 Score = 30.2 bits (67), Expect = 0.32
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 56  STEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYL 115
            +   +      + F YYL   R    +  + L  P  +      +        +L   L
Sbjct: 292 GSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLL 351

Query: 116 LSFFYYLYGSEFSY 129
             FF + Y   F Y
Sbjct: 352 HGFFIF-YAHHFDY 364


>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase,
           transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
          Length = 147

 Score = 26.2 bits (57), Expect = 3.8
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 92  TSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLT--VIAFDELKVDYK 149
           TS+   D +N+  ++ ++ L+  +LS  +Y Y S+  Y   F  LT  V   +ELK    
Sbjct: 56  TSMRMQDFINEDNKDSFV-LSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114

Query: 150 NPIDQCNSLNPLVLPEYL 167
              D+    N      Y+
Sbjct: 115 TITDEIALHNINKQIHYM 132


>3sgg_A Hypothetical hydrolase; 7-stranded beta/alpha barrel, structural
           genomics, joint CEN structural genomics, JCSG; HET: MSE;
           1.25A {Bacteroides thetaiotaomicron}
          Length = 536

 Score = 26.7 bits (58), Expect = 4.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 77  YRNRPVMSGYGLYDPTSIMNADTLN 101
           Y    V+ GY +Y P S   + ++N
Sbjct: 116 YVETGVIKGYIVYTPYSEGQSHSIN 140


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,837,886
Number of extensions: 155531
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 10
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.2 bits)