RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12738
         (173 letters)



>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 25.5 bits (56), Expect = 4.6
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 27  PEYLAHAIFNH-NYV---GNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPV 82
              + + I NH  Y    GNLR+  T+F  +      +      L+ +     GY+    
Sbjct: 137 AHGMFNYICNHVKYATNKGNLRSAITIFPQRTDGKHDFRVWNSQLIRY----AGYKQP-- 190

Query: 83  MSGYGLYDPTSIMNADTLNKCQREGW 108
             G  L DP    N      C ++GW
Sbjct: 191 -DGSTLGDP---ANVQFTEICIQQGW 212


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 25.1 bits (55), Expect = 5.8
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 27  PEYLAHAIFNH-NYV---GNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPV 82
            + +   I NH  Y    GNLR+  TVF  +      +      L+ +     GYR +  
Sbjct: 140 AQEMFTYICNHIKYATNRGNLRSAITVFPQRAPGRGDFRIWNSQLVRY----AGYRQQ-- 193

Query: 83  MSGYGLYDPTSIMNADTLNKCQREGW 108
             G    DP    N +    C + GW
Sbjct: 194 -DGSVRGDP---ANVEITELCIQHGW 215


>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C)
           {Human hepatitis A virus [TaxId: 208726]}
          Length = 212

 Score = 24.6 bits (53), Expect = 7.2
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 78  RNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSF---FK 134
             R VM+  G+ D   ++ +      +    ++  F     +Y +        S    F+
Sbjct: 24  SVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDVGFQ 83

Query: 135 DLTVIAFD 142
           D+ ++   
Sbjct: 84  DVVLMKVP 91


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 24.3 bits (53), Expect = 9.1
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 20/89 (22%)

Query: 27  PEYLAHAIFNH-NYV---GNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPV 82
            + +   I  H  Y    GN+R+  TVF  +      +      L+ +            
Sbjct: 138 AQEMFQHICRHILYATNNGNIRSAITVFPQRSDGKHDFRLWNSQLIRY------------ 185

Query: 83  MSGYGLYDPTSI---MNADTLNKCQREGW 108
            +GY + D T        +    C   GW
Sbjct: 186 -AGYQMPDGTIRGDAATLEFTQLCIDLGW 213


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.145    0.459 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 723,469
Number of extensions: 33672
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 10
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.2 bits)