Query psy12745
Match_columns 175
No_of_seqs 128 out of 1379
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:35:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.8 1.4E-19 3.1E-24 151.2 6.7 144 2-163 142-305 (485)
2 KOG0254|consensus 99.7 3E-16 6.5E-21 133.2 9.8 151 2-171 168-338 (513)
3 PF00083 Sugar_tr: Sugar (and 99.6 2E-17 4.2E-22 137.4 -5.2 142 2-160 128-284 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.3 4.6E-12 9.9E-17 107.3 8.5 95 7-108 145-251 (502)
5 TIGR01299 synapt_SV2 synaptic 99.3 4.6E-12 9.9E-17 111.7 8.6 97 7-110 285-382 (742)
6 KOG0253|consensus 99.1 2.5E-10 5.3E-15 92.5 8.4 86 7-112 195-280 (528)
7 KOG0255|consensus 99.1 6.3E-10 1.4E-14 94.6 9.1 85 2-109 197-281 (521)
8 TIGR00898 2A0119 cation transp 99.1 7.9E-10 1.7E-14 93.3 9.0 83 7-111 210-292 (505)
9 PRK10077 xylE D-xylose transpo 99.0 3E-09 6.5E-14 89.0 8.8 90 7-107 150-239 (479)
10 TIGR00879 SP MFS transporter, 98.7 1.2E-07 2.7E-12 78.1 8.8 81 7-106 157-240 (481)
11 PRK10642 proline/glycine betai 98.6 9.4E-08 2E-12 80.8 6.7 75 7-92 148-222 (490)
12 PRK09952 shikimate transporter 98.5 1E-07 2.2E-12 79.6 5.3 75 7-92 155-229 (438)
13 PRK10642 proline/glycine betai 98.5 1.4E-07 3.1E-12 79.8 5.6 82 7-107 372-459 (490)
14 PRK10406 alpha-ketoglutarate t 98.3 1.9E-06 4E-11 71.7 6.5 72 7-89 154-225 (432)
15 KOG2533|consensus 98.1 1.6E-06 3.5E-11 73.7 3.5 72 7-91 164-238 (495)
16 TIGR00903 2A0129 major facilit 98.1 6.6E-06 1.4E-10 67.4 6.2 64 7-89 108-172 (368)
17 TIGR00891 2A0112 putative sial 97.9 3.7E-05 8.1E-10 62.4 7.8 70 7-93 130-199 (405)
18 TIGR00883 2A0106 metabolite-pr 97.8 5.1E-05 1.1E-09 61.1 6.0 74 7-91 126-199 (394)
19 PRK15075 citrate-proton sympor 97.7 0.00011 2.4E-09 61.1 6.4 73 7-90 147-219 (434)
20 TIGR00895 2A0115 benzoate tran 97.6 0.00016 3.6E-09 58.3 6.8 80 7-106 135-215 (398)
21 TIGR02332 HpaX 4-hydroxyphenyl 97.6 5.8E-05 1.3E-09 62.5 4.1 68 7-87 126-194 (412)
22 PRK11551 putative 3-hydroxyphe 97.6 0.00032 7E-09 57.4 7.9 67 7-92 133-200 (406)
23 KOG0252|consensus 97.6 5.6E-05 1.2E-09 63.3 3.0 84 7-98 174-262 (538)
24 TIGR00901 2A0125 AmpG-related 97.5 0.00032 6.9E-09 56.5 6.5 72 3-86 110-182 (356)
25 PRK03893 putative sialic acid 97.5 0.00032 7E-09 59.0 6.4 67 7-92 138-204 (496)
26 PRK11902 ampG muropeptide tran 97.4 0.00058 1.3E-08 56.2 7.5 64 7-88 124-187 (402)
27 PRK11010 ampG muropeptide tran 97.4 0.00068 1.5E-08 57.7 7.5 63 7-87 137-199 (491)
28 TIGR00894 2A0114euk Na(+)-depe 97.3 0.00025 5.5E-09 59.4 4.5 62 7-87 161-224 (465)
29 PRK12307 putative sialic acid 97.3 0.00051 1.1E-08 56.6 6.1 65 7-90 136-200 (426)
30 TIGR00893 2A0114 d-galactonate 97.2 0.00043 9.4E-09 55.4 3.9 62 7-87 112-174 (399)
31 PRK11663 regulatory protein Uh 96.9 0.0019 4E-08 53.9 5.8 64 7-89 141-205 (434)
32 COG2814 AraJ Arabinose efflux 96.8 0.0036 7.8E-08 51.9 6.2 58 7-83 131-189 (394)
33 PRK03545 putative arabinose tr 96.8 0.0035 7.6E-08 51.2 6.0 61 7-86 127-188 (390)
34 PRK15403 multidrug efflux syst 96.7 0.0057 1.2E-07 50.7 6.5 62 7-87 134-196 (413)
35 PTZ00207 hypothetical protein; 96.5 0.0065 1.4E-07 53.0 6.2 81 8-108 150-233 (591)
36 TIGR00899 2A0120 sugar efflux 96.5 0.0044 9.4E-08 49.9 4.9 63 7-88 117-182 (375)
37 PRK14995 methyl viologen resis 96.5 0.005 1.1E-07 52.3 5.3 62 7-87 125-187 (495)
38 COG2271 UhpC Sugar phosphate p 96.4 0.0037 8.1E-08 52.0 3.9 62 7-87 147-211 (448)
39 TIGR00712 glpT glycerol-3-phos 96.4 0.011 2.4E-07 49.2 6.7 64 7-88 148-212 (438)
40 PRK10091 MFS transport protein 96.3 0.01 2.2E-07 48.4 6.1 61 7-86 121-182 (382)
41 PF06609 TRI12: Fungal trichot 96.3 0.0093 2E-07 52.1 5.6 63 2-84 156-220 (599)
42 TIGR00880 2_A_01_02 Multidrug 96.2 0.015 3.2E-07 39.4 5.5 60 7-85 81-141 (141)
43 PRK10213 nepI ribonucleoside t 96.2 0.011 2.3E-07 48.7 5.6 62 7-87 138-200 (394)
44 TIGR00710 efflux_Bcr_CflA drug 96.2 0.015 3.2E-07 46.9 6.3 62 7-87 123-185 (385)
45 KOG2532|consensus 96.2 0.012 2.6E-07 50.0 5.8 63 6-86 157-220 (466)
46 TIGR00900 2A0121 H+ Antiporter 96.2 0.0095 2.1E-07 47.4 5.1 52 7-77 122-173 (365)
47 PRK12382 putative transporter; 96.2 0.019 4.1E-07 46.8 6.8 61 7-86 142-202 (392)
48 PRK10489 enterobactin exporter 96.0 0.018 3.9E-07 47.5 5.9 62 7-87 140-201 (417)
49 PRK11102 bicyclomycin/multidru 95.9 0.027 6E-07 45.4 6.7 61 7-86 109-170 (377)
50 TIGR00792 gph sugar (Glycoside 95.9 0.014 3.1E-07 48.1 5.0 73 2-86 125-198 (437)
51 PF07690 MFS_1: Major Facilita 95.9 0.0061 1.3E-07 48.3 2.6 61 7-86 115-176 (352)
52 PRK15402 multidrug efflux syst 95.8 0.039 8.4E-07 45.3 7.1 63 7-88 131-194 (406)
53 PRK05122 major facilitator sup 95.8 0.034 7.4E-07 45.4 6.7 61 7-86 142-202 (399)
54 TIGR00711 efflux_EmrB drug res 95.7 0.0097 2.1E-07 49.8 3.3 62 7-87 120-182 (485)
55 TIGR00805 oat sodium-independe 95.7 0.031 6.7E-07 49.3 6.4 72 7-85 202-283 (633)
56 PRK11043 putative transporter; 95.6 0.045 9.8E-07 44.8 6.8 61 7-86 124-184 (401)
57 PRK10473 multidrug efflux syst 95.6 0.038 8.1E-07 45.1 6.2 61 7-86 121-182 (392)
58 PRK11195 lysophospholipid tran 95.4 0.029 6.2E-07 46.2 5.0 62 7-88 118-179 (393)
59 PRK11652 emrD multidrug resist 95.4 0.042 9.1E-07 44.8 5.8 62 7-87 126-188 (394)
60 PRK09874 drug efflux system pr 95.2 0.041 8.9E-07 44.8 5.3 61 7-86 136-197 (408)
61 PRK11273 glpT sn-glycerol-3-ph 95.2 0.055 1.2E-06 45.3 6.1 64 7-88 150-214 (452)
62 TIGR00881 2A0104 phosphoglycer 95.0 0.017 3.6E-07 46.2 2.4 62 7-87 113-176 (379)
63 PRK11646 multidrug resistance 95.0 0.081 1.8E-06 43.6 6.4 58 7-84 129-187 (400)
64 TIGR00890 2A0111 Oxalate/Forma 94.7 0.074 1.6E-06 42.4 5.3 60 8-86 121-181 (377)
65 PRK15011 sugar efflux transpor 94.4 0.094 2E-06 43.0 5.5 56 12-86 142-198 (393)
66 TIGR02718 sider_RhtX_FptX side 94.3 0.18 3.8E-06 41.2 6.9 59 7-84 127-185 (390)
67 PRK08633 2-acyl-glycerophospho 94.0 0.16 3.5E-06 47.2 6.8 72 7-88 133-205 (1146)
68 PRK06814 acylglycerophosphoeth 93.9 0.13 2.8E-06 48.1 5.9 61 7-86 138-198 (1140)
69 cd06174 MFS The Major Facilita 93.9 0.11 2.4E-06 40.7 4.8 57 7-82 117-173 (352)
70 PRK10077 xylE D-xylose transpo 93.9 0.18 3.8E-06 42.2 6.1 67 7-86 394-461 (479)
71 TIGR00889 2A0110 nucleoside tr 93.7 0.095 2.1E-06 43.6 4.2 66 7-85 338-405 (418)
72 TIGR00892 2A0113 monocarboxyla 93.7 0.084 1.8E-06 44.4 3.9 51 7-76 363-414 (455)
73 PLN00028 nitrate transmembrane 93.6 0.13 2.8E-06 43.6 5.0 70 7-86 153-223 (476)
74 PRK09556 uhpT sugar phosphate 93.6 0.074 1.6E-06 44.7 3.4 65 7-87 152-217 (467)
75 TIGR00886 2A0108 nitrite extru 93.5 0.13 2.7E-06 41.3 4.6 72 7-87 120-193 (366)
76 PRK11128 putative 3-phenylprop 93.4 0.11 2.3E-06 42.4 4.1 58 9-85 124-181 (382)
77 PRK03699 putative transporter; 93.3 0.26 5.7E-06 40.3 6.2 54 7-78 125-178 (394)
78 PRK15011 sugar efflux transpor 93.1 0.24 5.2E-06 40.6 5.7 58 7-84 335-392 (393)
79 KOG1330|consensus 93.0 0.0092 2E-07 50.3 -2.8 62 7-86 151-213 (493)
80 TIGR01299 synapt_SV2 synaptic 93.0 0.15 3.3E-06 45.8 4.6 60 7-86 678-737 (742)
81 PRK10504 putative transporter; 93.0 0.18 3.8E-06 42.2 4.8 61 7-86 128-189 (471)
82 PRK05122 major facilitator sup 91.9 0.27 5.9E-06 40.1 4.5 57 7-82 332-388 (399)
83 PRK10054 putative transporter; 91.8 0.23 4.9E-06 40.9 3.9 59 7-85 126-185 (395)
84 TIGR00885 fucP L-fucose:H+ sym 91.7 0.62 1.3E-05 38.7 6.4 71 7-84 124-210 (410)
85 PF13347 MFS_2: MFS/sugar tran 91.4 0.24 5.1E-06 41.1 3.7 70 2-84 129-200 (428)
86 PRK11273 glpT sn-glycerol-3-ph 91.3 0.52 1.1E-05 39.4 5.7 54 7-78 377-430 (452)
87 TIGR00892 2A0113 monocarboxyla 91.2 0.36 7.8E-06 40.6 4.6 50 9-77 139-188 (455)
88 TIGR00902 2A0127 phenyl propri 90.8 0.3 6.6E-06 39.8 3.7 46 7-71 122-167 (382)
89 cd06174 MFS The Major Facilita 90.6 0.46 9.9E-06 37.2 4.5 56 7-81 295-350 (352)
90 TIGR00879 SP MFS transporter, 90.5 0.21 4.6E-06 41.0 2.6 61 7-86 413-474 (481)
91 PRK10207 dipeptide/tripeptide 90.3 0.52 1.1E-05 40.2 4.8 42 10-70 140-181 (489)
92 TIGR00806 rfc RFC reduced fola 89.9 0.7 1.5E-05 39.7 5.2 61 7-87 144-207 (511)
93 PRK09874 drug efflux system pr 89.7 0.68 1.5E-05 37.7 4.9 53 7-78 341-393 (408)
94 PRK09584 tppB putative tripept 89.3 0.72 1.6E-05 39.4 4.9 45 10-73 147-191 (500)
95 TIGR01272 gluP glucose/galacto 89.1 1.1 2.4E-05 35.8 5.6 72 7-85 40-117 (310)
96 KOG2615|consensus 88.9 0.38 8.2E-06 40.1 2.8 70 2-85 146-216 (451)
97 TIGR01301 GPH_sucrose GPH fami 88.7 1 2.2E-05 38.6 5.3 76 2-86 140-222 (477)
98 PF03137 OATP: Organic Anion T 88.4 0.14 3E-06 44.4 0.0 34 7-47 171-204 (539)
99 TIGR00898 2A0119 cation transp 88.3 0.68 1.5E-05 39.1 4.1 59 7-86 440-498 (505)
100 TIGR00896 CynX cyanate transpo 87.6 1.2 2.5E-05 35.7 4.9 49 8-73 117-165 (355)
101 KOG3626|consensus 87.5 1.7 3.6E-05 39.1 6.0 73 7-86 267-346 (735)
102 TIGR00897 2A0118 polyol permea 87.3 2.1 4.5E-05 35.1 6.4 31 7-43 135-165 (402)
103 PRK12382 putative transporter; 87.0 1.1 2.3E-05 36.5 4.4 53 7-78 332-384 (392)
104 PRK09705 cynX putative cyanate 86.6 2.4 5.2E-05 34.8 6.3 50 8-75 127-176 (393)
105 TIGR00899 2A0120 sugar efflux 86.5 1.9 4.1E-05 34.5 5.6 57 9-84 319-375 (375)
106 TIGR00893 2A0114 d-galactonate 86.1 1.9 4.2E-05 34.2 5.4 53 7-78 341-394 (399)
107 TIGR00887 2A0109 phosphate:H+ 85.8 1.6 3.5E-05 37.1 5.0 71 7-86 422-492 (502)
108 TIGR00890 2A0111 Oxalate/Forma 85.7 0.93 2E-05 36.0 3.4 49 7-74 325-373 (377)
109 PRK11551 putative 3-hydroxyphe 85.6 1.6 3.5E-05 35.6 4.8 58 7-82 338-395 (406)
110 TIGR00788 fbt folate/biopterin 85.5 1.5 3.2E-05 37.2 4.7 46 22-86 167-212 (468)
111 TIGR00924 yjdL_sub1_fam amino 85.5 1.8 3.9E-05 36.7 5.2 46 10-74 138-183 (475)
112 PRK09528 lacY galactoside perm 85.2 1.3 2.9E-05 36.4 4.2 51 7-76 345-396 (420)
113 COG2223 NarK Nitrate/nitrite t 85.2 2.9 6.4E-05 35.0 6.0 70 2-88 127-199 (417)
114 TIGR00897 2A0118 polyol permea 84.4 2.7 5.9E-05 34.5 5.6 56 7-81 344-399 (402)
115 PRK03633 putative MFS family t 84.0 1.9 4.2E-05 35.0 4.6 53 7-78 315-367 (381)
116 PRK11462 putative transporter; 82.7 3 6.6E-05 35.2 5.4 72 2-85 135-207 (460)
117 TIGR00882 2A0105 oligosacchari 81.8 2.4 5.2E-05 34.6 4.4 53 14-86 134-187 (396)
118 PRK10489 enterobactin exporter 81.5 2.3 4.9E-05 35.0 4.1 61 7-86 342-403 (417)
119 PRK09669 putative symporter Ya 80.7 3.3 7.1E-05 34.5 4.8 71 2-84 135-206 (444)
120 PRK09528 lacY galactoside perm 79.8 2.7 5.9E-05 34.6 4.1 56 10-85 138-194 (420)
121 PRK10133 L-fucose transporter; 79.2 4.6 9.9E-05 33.8 5.2 30 7-43 147-176 (438)
122 PRK15034 nitrate/nitrite trans 77.5 9.8 0.00021 32.5 6.7 73 7-86 157-236 (462)
123 COG2211 MelB Na+/melibiose sym 77.5 6.1 0.00013 33.8 5.5 72 2-85 138-210 (467)
124 PRK09556 uhpT sugar phosphate 77.3 7.6 0.00016 32.6 6.1 64 7-78 379-444 (467)
125 KOG0569|consensus 75.2 13 0.00029 31.9 6.9 62 3-85 395-457 (485)
126 PRK10429 melibiose:sodium symp 75.1 6.5 0.00014 33.2 5.1 72 2-85 132-204 (473)
127 PRK11663 regulatory protein Uh 73.7 3.8 8.2E-05 34.0 3.3 52 7-77 367-418 (434)
128 PF03209 PUCC: PUCC protein; 73.6 8.2 0.00018 32.4 5.1 34 2-43 115-148 (403)
129 TIGR00712 glpT glycerol-3-phos 73.5 3.3 7.1E-05 34.4 2.9 60 7-85 375-436 (438)
130 PRK09952 shikimate transporter 73.5 11 0.00023 31.5 5.9 62 7-85 373-435 (438)
131 TIGR00924 yjdL_sub1_fam amino 73.2 6.9 0.00015 33.2 4.8 50 7-75 411-460 (475)
132 PRK15462 dipeptide/tripeptide 72.7 8.4 0.00018 33.2 5.2 43 10-71 135-177 (493)
133 PF07672 MFS_Mycoplasma: Mycop 72.2 2.9 6.2E-05 33.0 2.1 56 9-79 2-58 (267)
134 TIGR00788 fbt folate/biopterin 72.2 17 0.00036 30.8 6.9 67 7-84 381-447 (468)
135 PRK03893 putative sialic acid 71.9 5 0.00011 33.7 3.7 45 7-70 396-440 (496)
136 PRK11010 ampG muropeptide tran 71.1 7.7 0.00017 33.0 4.7 60 7-85 346-405 (491)
137 PRK03545 putative arabinose tr 70.4 13 0.00028 30.1 5.7 51 8-77 324-374 (390)
138 COG2807 CynX Cyanate permease 70.3 13 0.00028 31.0 5.5 52 9-78 130-181 (395)
139 PRK09705 cynX putative cyanate 70.0 11 0.00024 30.8 5.2 62 7-86 323-385 (393)
140 PF06813 Nodulin-like: Nodulin 68.5 13 0.00028 29.1 5.0 56 7-82 126-181 (250)
141 TIGR02718 sider_RhtX_FptX side 67.8 12 0.00025 30.4 4.9 52 7-77 334-385 (390)
142 KOG3764|consensus 67.5 3.5 7.7E-05 34.7 1.8 55 9-82 192-246 (464)
143 PRK03633 putative MFS family t 67.4 12 0.00026 30.3 4.9 30 7-43 124-153 (381)
144 PRK15402 multidrug efflux syst 66.3 14 0.00031 30.1 5.2 30 7-43 338-367 (406)
145 PF13428 TPR_14: Tetratricopep 65.8 12 0.00027 20.3 3.3 26 87-112 9-34 (44)
146 PF00083 Sugar_tr: Sugar (and 64.7 1.6 3.5E-05 36.1 -0.8 61 7-86 379-440 (451)
147 KOG2504|consensus 64.5 6.9 0.00015 33.8 3.0 61 7-86 164-225 (509)
148 KOG2816|consensus 62.8 20 0.00042 30.7 5.4 65 2-86 138-203 (463)
149 PF11990 DUF3487: Protein of u 60.7 51 0.0011 22.7 6.3 22 5-26 13-34 (121)
150 PF03092 BT1: BT1 family; Int 58.7 11 0.00024 31.7 3.2 59 6-84 118-177 (433)
151 PRK10697 DNA-binding transcrip 58.3 17 0.00037 25.1 3.5 47 59-105 34-86 (118)
152 TIGR00792 gph sugar (Glycoside 58.2 62 0.0013 26.4 7.6 32 7-45 348-379 (437)
153 PF03825 Nuc_H_symport: Nucleo 58.0 28 0.00061 29.0 5.5 58 6-76 330-388 (400)
154 PF05977 MFS_3: Transmembrane 57.3 18 0.0004 31.3 4.4 50 6-74 336-385 (524)
155 PRK10504 putative transporter; 57.1 21 0.00045 29.8 4.6 31 7-44 383-413 (471)
156 TIGR03750 conj_TIGR03750 conju 56.9 41 0.0009 22.9 5.1 23 4-26 9-31 (111)
157 PLN00028 nitrate transmembrane 55.8 19 0.00041 30.4 4.2 57 7-83 377-433 (476)
158 PRK11646 multidrug resistance 55.4 12 0.00025 30.9 2.8 32 7-45 327-358 (400)
159 PF11700 ATG22: Vacuole efflux 55.2 59 0.0013 27.8 7.1 66 11-87 186-252 (477)
160 PF15050 SCIMP: SCIMP protein 53.2 19 0.00042 24.8 3.1 19 86-104 31-49 (133)
161 PRK09848 glucuronide transport 53.1 99 0.0021 25.6 8.1 30 7-43 356-385 (448)
162 COG2814 AraJ Arabinose efflux 51.9 34 0.00074 28.7 5.0 52 8-78 330-381 (394)
163 PRK09584 tppB putative tripept 51.5 28 0.00061 29.7 4.6 28 6-40 411-438 (500)
164 KOG2325|consensus 51.2 28 0.00061 30.0 4.5 72 8-86 160-233 (488)
165 PRK10406 alpha-ketoglutarate t 50.7 41 0.0009 27.8 5.4 15 7-21 366-380 (432)
166 KOG0252|consensus 50.7 14 0.00031 31.8 2.6 66 7-86 436-501 (538)
167 PRK12307 putative sialic acid 50.1 29 0.00063 28.3 4.4 30 7-43 351-380 (426)
168 PF11151 DUF2929: Protein of u 50.1 52 0.0011 19.4 4.7 29 58-86 28-56 (57)
169 PF13174 TPR_6: Tetratricopept 49.7 23 0.00049 17.2 2.4 22 90-111 11-32 (33)
170 PRK08633 2-acyl-glycerophospho 49.5 38 0.00082 31.8 5.4 62 7-86 352-414 (1146)
171 PF04024 PspC: PspC domain; I 47.2 35 0.00077 20.4 3.3 29 58-86 28-60 (61)
172 PF03092 BT1: BT1 family; Int 46.3 47 0.001 27.9 5.1 69 7-86 348-416 (433)
173 PF10183 ESSS: ESSS subunit of 45.1 80 0.0017 21.1 5.1 30 57-86 55-85 (105)
174 TIGR00889 2A0110 nucleoside tr 44.8 30 0.00065 28.7 3.7 26 60-86 158-183 (418)
175 TIGR02978 phageshock_pspC phag 44.7 42 0.00091 23.2 3.8 29 59-87 29-63 (121)
176 PRK11902 ampG muropeptide tran 44.6 32 0.00069 28.1 3.8 22 58-79 365-386 (402)
177 PF01535 PPR: PPR repeat; Int 43.7 27 0.00059 16.6 2.1 19 90-108 11-29 (31)
178 TIGR00756 PPR pentatricopeptid 42.8 42 0.0009 16.2 3.0 20 89-108 10-29 (35)
179 PF15061 DUF4538: Domain of un 42.1 26 0.00056 20.9 2.1 20 59-78 3-22 (58)
180 PF13829 DUF4191: Domain of un 42.0 1.1E+02 0.0024 23.6 6.0 25 83-107 75-99 (224)
181 KOG0255|consensus 40.7 60 0.0013 27.6 5.0 62 7-87 436-497 (521)
182 PRK06814 acylglycerophosphoeth 40.4 59 0.0013 30.7 5.3 30 7-43 364-393 (1140)
183 KOG2532|consensus 40.3 12 0.00026 31.9 0.7 55 8-78 388-442 (466)
184 PF13041 PPR_2: PPR repeat fam 39.4 48 0.001 18.2 3.0 22 88-109 12-33 (50)
185 PF01770 Folate_carrier: Reduc 39.1 94 0.002 26.3 5.7 64 7-87 123-186 (412)
186 PRK09669 putative symporter Ya 38.7 73 0.0016 26.4 5.1 31 7-44 356-386 (444)
187 TIGR00894 2A0114euk Na(+)-depe 38.0 25 0.00054 29.3 2.2 58 9-82 392-449 (465)
188 PF07719 TPR_2: Tetratricopept 37.5 54 0.0012 15.9 3.3 22 89-110 11-32 (34)
189 PRK03699 putative transporter; 37.1 46 0.00099 27.1 3.6 51 9-78 325-375 (394)
190 TIGR00882 2A0105 oligosacchari 36.7 62 0.0013 26.2 4.3 51 7-76 337-388 (396)
191 KOG2447|consensus 36.5 1.2E+02 0.0026 24.1 5.5 58 2-70 182-243 (287)
192 PF12854 PPR_1: PPR repeat 35.4 42 0.0009 17.2 2.1 17 89-105 17-33 (34)
193 PRK09848 glucuronide transport 35.0 92 0.002 25.8 5.2 23 3-25 136-158 (448)
194 PF00854 PTR2: POT family; In 33.9 45 0.00097 27.1 3.0 52 8-78 67-118 (372)
195 PRK10054 putative transporter; 33.0 1.3E+02 0.0027 24.6 5.6 60 7-86 328-388 (395)
196 PF04547 Anoctamin: Calcium-ac 32.3 1E+02 0.0023 26.0 5.1 20 73-92 427-446 (452)
197 PF14715 FixP_N: N-terminal do 32.2 86 0.0019 18.1 3.2 27 58-84 21-47 (51)
198 TIGR00902 2A0127 phenyl propri 31.9 1.3E+02 0.0028 24.3 5.4 32 7-45 322-354 (382)
199 KOG2513|consensus 31.7 2E+02 0.0043 25.7 6.6 15 76-90 587-601 (647)
200 PF13812 PPR_3: Pentatricopept 30.6 73 0.0016 15.4 2.7 19 90-108 12-30 (34)
201 PF12273 RCR: Chitin synthesis 30.3 27 0.00059 24.2 1.1 13 62-74 1-13 (130)
202 PF14559 TPR_19: Tetratricopep 30.2 56 0.0012 18.9 2.4 24 89-112 1-24 (68)
203 PRK11195 lysophospholipid tran 30.2 1.4E+02 0.003 24.4 5.4 30 7-43 323-353 (393)
204 KOG1278|consensus 29.7 1.1E+02 0.0024 27.1 4.6 32 8-46 358-389 (628)
205 PF14241 DUF4341: Domain of un 29.4 68 0.0015 19.2 2.6 18 57-74 42-59 (62)
206 TIGR01301 GPH_sucrose GPH fami 29.1 1.5E+02 0.0033 25.5 5.5 61 9-86 414-475 (477)
207 PRK10207 dipeptide/tripeptide 28.7 1E+02 0.0022 26.4 4.4 31 6-43 408-438 (489)
208 PF07721 TPR_4: Tetratricopept 26.3 61 0.0013 15.3 1.6 15 89-103 11-25 (26)
209 TIGR00903 2A0129 major facilit 25.5 1.6E+02 0.0035 24.0 4.9 30 7-43 310-339 (368)
210 PF13334 DUF4094: Domain of un 24.8 84 0.0018 20.7 2.6 27 60-86 3-30 (95)
211 PF13432 TPR_16: Tetratricopep 24.7 97 0.0021 17.7 2.7 22 90-111 42-63 (65)
212 COG2271 UhpC Sugar phosphate p 23.6 56 0.0012 27.8 1.9 50 7-76 376-427 (448)
213 PF15192 TMEM213: TMEM213 fami 22.7 1.6E+02 0.0034 18.5 3.3 12 78-89 69-80 (82)
214 PF11700 ATG22: Vacuole efflux 22.1 2.1E+02 0.0045 24.5 5.1 60 7-84 410-469 (477)
215 PRK10213 nepI ribonucleoside t 21.9 2.7E+02 0.0059 22.7 5.7 45 10-73 337-381 (394)
216 TIGR02230 ATPase_gene1 F0F1-AT 21.4 2.6E+02 0.0056 18.6 5.9 33 34-74 57-89 (100)
217 COG0738 FucP Fucose permease [ 21.2 1.8E+02 0.0039 24.7 4.3 62 7-75 134-202 (422)
218 TIGR03032 conserved hypothetic 20.7 29 0.00063 28.2 -0.3 11 79-89 201-211 (335)
219 KOG2563|consensus 20.4 96 0.0021 26.7 2.6 32 7-45 170-201 (480)
220 COG2211 MelB Na+/melibiose sym 20.4 3.6E+02 0.0079 23.2 6.1 63 7-76 364-427 (467)
221 cd00925 Cyt_c_Oxidase_VIa Cyto 20.1 1.1E+02 0.0023 19.9 2.3 22 58-79 13-34 (86)
No 1
>KOG0569|consensus
Probab=99.79 E-value=1.4e-19 Score=151.21 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=111.7
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
.|++ |++.||..+++.+++..+|. +++..++.-- +.| ++..|++.+.+..+|+++..+...+
T Consensus 142 ~E~s-P~~~RG~~g~~~~~~~~~g~-------ll~~~~~l~~--------ilG--t~~~W~~l~~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 142 TEIS-PKNLRGALGTLLQIGVVIGI-------LLGQVLGLPS--------LLG--TEDLWPYLLAFPLIPALLQLALLPF 203 (485)
T ss_pred hhcC-hhhhccHHHHHHHHHHHHHH-------HHHHHHccHH--------hcC--CCcchHHHHHHHHHHHHHHHHHHhc
Confidence 4555 99999999999999999999 9887776654 233 5678999999999999999999999
Q ss_pred cCCChHHHHh-cCChHHHHHHHHHHhhccCCCCCC----------------cccccccccCCchhHH--HHHHHHhccee
Q psy12745 82 IPESPKFLMT-HGRSDDALDVFQSMYARNTGKPKD----------------SYPVKSLMGAPPTSIC--ALLMLFGLKEL 142 (175)
Q Consensus 82 lpESP~~L~~-~g~~~~a~~~l~~l~~~~~~~~~~----------------~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 142 (175)
+|||||||+. |||.|+|++.++++++.++++.+. ..++.++++.+..++. ..+++...||+
T Consensus 204 ~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~ 283 (485)
T KOG0569|consen 204 LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQF 283 (485)
T ss_pred CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence 9999999987 899999999999998876432211 1123344444333322 33445556999
Q ss_pred ecceeEeechhhHHhhhc-cCC
Q psy12745 143 TVEERVITRPTSIQEIEE-EGD 163 (175)
Q Consensus 143 ~~~~~i~~~~~~i~~~~~-~~~ 163 (175)
+|.+.+.+|.+.+++++| +.+
T Consensus 284 sGi~ai~~Yst~i~~~aG~~~~ 305 (485)
T KOG0569|consen 284 SGINAIFFYSTSIFKTAGFTPE 305 (485)
T ss_pred cCcceeHHHHHHHHHHcCCCHH
Confidence 999999999999999998 444
No 2
>KOG0254|consensus
Probab=99.67 E-value=3e-16 Score=133.23 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=110.7
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
+|++ |++.||.+.+..++.+++|. +++.++++..... .++||+++.+..+|+++..+..++
T Consensus 168 sEia-p~~~RG~l~~~~~l~~~~Gi-------~~~~~~~~~~~~~-----------~~~Wr~~~~~~~i~~~~~~~~~~~ 228 (513)
T KOG0254|consen 168 SEIA-PAHIRGTLVSLYQLFITIGI-------LLGYCINYGTSKV-----------YAGWRIPLGLALIPAVILALGMLF 228 (513)
T ss_pred hhcC-ChhhhHHHHHHHHHHHHHHH-------HHHHHHhhhhccC-----------CccHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 88899999999999999999 9998888876211 158999999999999998877888
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHhhccCCCCCCcc---c---------------ccccccCC-chhHHHHHHHHhccee
Q psy12745 82 IPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSY---P---------------VKSLMGAP-PTSICALLMLFGLKEL 142 (175)
Q Consensus 82 lpESP~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~---~---------------~~~l~~~~-~~~~~~~~~~~~~~~~ 142 (175)
+||||+||.++|+.++|++.++++++.++.+...+. . ..+++++. ++.....+.+..+||+
T Consensus 229 ~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~ 308 (513)
T KOG0254|consen 229 LPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQL 308 (513)
T ss_pred CCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999884322211111 0 11222211 1222233455556999
Q ss_pred ecceeEeechhhHHhhhc-cCCchhhhhhc
Q psy12745 143 TVEERVITRPTSIQEIEE-EGDDMTHSMVS 171 (175)
Q Consensus 143 ~~~~~i~~~~~~i~~~~~-~~~~~~~~~v~ 171 (175)
+|.+.+.+|.+.+|+..+ +.+....+++.
T Consensus 309 tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~ 338 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKSAGLKSDTFLASIIL 338 (513)
T ss_pred hCCceEEeehHHHHHhcCCCCchHHHHHHH
Confidence 999999999999999998 44434444443
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.59 E-value=2e-17 Score=137.45 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=102.7
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
.|++ |+++||+..++.++.+.+|. +++.++++...... ++++||+.+.++.+|+++.++...+
T Consensus 128 ~E~~-~~~~R~~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~---------~~~~Wr~~~~~~~~~~l~~~~~~~~ 190 (451)
T PF00083_consen 128 SEIA-PPKHRGFLSSLFQLFWALGI-------LLASLIGYIVSYYS---------DNWGWRILLIFGAIPSLLVLLLRFF 190 (451)
T ss_pred cccc-cccccccccccccccccccc-------cccccccccccccc---------ccccccccccccccccccccccccc
Confidence 3444 78899999999999999999 88888887763321 2368999999999999888888889
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHhhccCCCCCCcc-------------cccccccCCc--hhHHHHHHHHhcceeecce
Q psy12745 82 IPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSY-------------PVKSLMGAPP--TSICALLMLFGLKELTVEE 146 (175)
Q Consensus 82 lpESP~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~-------------~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 146 (175)
+|||||||.+|||.|||++.++++++.+..+.+... ..+++++.+. ........+...+++++.+
T Consensus 191 ~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (451)
T PF00083_consen 191 LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGIN 270 (451)
T ss_pred cccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence 999999999999999999999997655322211111 1222333322 1122222333347788888
Q ss_pred eEeechhhHHhhhc
Q psy12745 147 RVITRPTSIQEIEE 160 (175)
Q Consensus 147 ~i~~~~~~i~~~~~ 160 (175)
.+.+|.+.+++..+
T Consensus 271 ~~~~~~~~i~~~~~ 284 (451)
T PF00083_consen 271 FIFYYSPSIFENAG 284 (451)
T ss_pred cccccccccccccc
Confidence 89999999998887
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.33 E-value=4.6e-12 Score=107.26 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccC-Ccccc----------cccccchHHHHHHhhHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWT-YPVFD----------FFLMCSWRIFLIVSTFPSLAG 75 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~-~~~~~----------~~~~~~Wr~~~~~~~i~~~~~ 75 (175)
|++.||+..++.+..+.+|. +++..++..+...... .+..+ ...+++||+++.++++|+++.
T Consensus 145 p~~~Rg~~~~~~~~~~~~g~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 145 TKKWRGAMMAAVFAMQGFGI-------LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred ChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence 88899999999999999999 8888887765432110 00000 012368999999999999988
Q ss_pred HHHHhhcCCChHHHHhcCChH-HHHHHHHHHhhc
Q psy12745 76 ALLVFFIPESPKFLMTHGRSD-DALDVFQSMYAR 108 (175)
Q Consensus 76 ~~~~~~lpESP~~L~~~g~~~-~a~~~l~~l~~~ 108 (175)
++.++++|||||||..|||.| ++++.+++..+.
T Consensus 218 ~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~ 251 (502)
T TIGR00887 218 LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251 (502)
T ss_pred HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence 888889999999999988875 477777776543
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.33 E-value=4.6e-12 Score=111.71 Aligned_cols=97 Identities=26% Similarity=0.593 Sum_probs=79.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccc-cCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIK-WTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
|++.||...++...++.+|. +++.++++.+.+.. +...........+||++++++++|+++.++..+++|||
T Consensus 285 p~~~Rg~~~g~~~~~~~iG~-------ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 285 AQEKRGEHLSWLCMFWMIGG-------IYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999 99998888776532 11111111123589999999999988888888899999
Q ss_pred hHHHHhcCChHHHHHHHHHHhhccC
Q psy12745 86 PKFLMTHGRSDDALDVFQSMYARNT 110 (175)
Q Consensus 86 P~~L~~~g~~~~a~~~l~~l~~~~~ 110 (175)
|+||..+||.++|.++++++++.|.
T Consensus 358 PrwL~~~gr~~eA~~iL~~i~~~n~ 382 (742)
T TIGR01299 358 PRFFLENGKHDEAWMILKLIHDTNM 382 (742)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999987764
No 6
>KOG0253|consensus
Probab=99.13 E-value=2.5e-10 Score=92.51 Aligned_cols=86 Identities=20% Similarity=0.373 Sum_probs=76.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|...|+..+-+. ..|.+|. ++...++++.++. .|||+.+++..+|..+.....+++||||
T Consensus 195 p~~~r~~~~V~~-~~waig~-------v~ea~law~vm~~------------~gwr~~l~~~~~pl~~~a~f~~w~~ESp 254 (528)
T KOG0253|consen 195 PSSHRWLLTVMS-FFWAIGQ-------VFEALLAWGVMSN------------FGWRYLLFTSSTPLMFAARFLVWVYESP 254 (528)
T ss_pred cCcCCCcchhHH-HHHHHHH-------HHHHHHHHHHHHh------------hhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence 676787777776 9999999 9999999999654 5999999988899888888899999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCC
Q psy12745 87 KFLMTHGRSDDALDVFQSMYARNTGK 112 (175)
Q Consensus 87 ~~L~~~g~~~~a~~~l~~l~~~~~~~ 112 (175)
||++.+|+++||.+.++++++.|+.+
T Consensus 255 Rf~~~~G~~~kAletL~kiArmNg~q 280 (528)
T KOG0253|consen 255 RFYLAKGDDYKALETLHKIARMNGKQ 280 (528)
T ss_pred chhhhcCChHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988764
No 7
>KOG0255|consensus
Probab=99.07 E-value=6.3e-10 Score=94.57 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=72.4
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
+|+- +++.|+..+++....+..|. +...+.++.. .+||+.+++..+|+++.++..++
T Consensus 197 ~E~~-~~~~R~~~~~~~~~~~~~~~-------~~~~~~a~~~---------------~~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 197 AEIV-SPKQRGLALTLGGFFFVGGL-------MLPAGAAYIT---------------RDWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred eeec-CcchhhHHHHHHHHHHHHHH-------HHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence 4555 55699999999777888888 8777888887 58999999999999988777666
Q ss_pred cCCChHHHHhcCChHHHHHHHHHHhhcc
Q psy12745 82 IPESPKFLMTHGRSDDALDVFQSMYARN 109 (175)
Q Consensus 82 lpESP~~L~~~g~~~~a~~~l~~l~~~~ 109 (175)
.||||||+..+||.++|.+.+++..+.|
T Consensus 254 ~~Es~rwl~~~g~~~~a~~~l~~~a~~n 281 (521)
T KOG0255|consen 254 PPESPRWLLSKGRIDEAIKILKKIAKLN 281 (521)
T ss_pred cCcChHHHHHcCchHHHHHHHHHHHhhc
Confidence 7799999999999999999999998765
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=99.05 E-value=7.9e-10 Score=93.30 Aligned_cols=83 Identities=29% Similarity=0.515 Sum_probs=73.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|+...++.+.++.+|. +++.++++.+ .+||+.+++.+++.++..+..+++||||
T Consensus 210 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~---------------~~wr~~~~~~~i~~~~~~~~~~~~~esp 267 (505)
T TIGR00898 210 PKKQRAIVGTLIQVFFSLGL-------VLLPLVAYFI---------------PDWRWLQLAVSLPTFLFFLLSWFVPESP 267 (505)
T ss_pred ChhhhHHHHHHHHHHHHHHH-------HHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 78899999999999999999 9999998876 3599999999998888777778899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCC
Q psy12745 87 KFLMTHGRSDDALDVFQSMYARNTG 111 (175)
Q Consensus 87 ~~L~~~g~~~~a~~~l~~l~~~~~~ 111 (175)
+|+..+++.+++.+.+++..+.|+.
T Consensus 268 ~~l~~~~~~~~a~~~l~~~~~~~~~ 292 (505)
T TIGR00898 268 RWLISQGRIEEALKILQRIAKINGK 292 (505)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988776543
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.96 E-value=3e-09 Score=89.01 Aligned_cols=90 Identities=19% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..+..+.++.+|. +++.+++..+.+..... ....++||++|++.++++++..+..+++||||
T Consensus 150 ~~~~rg~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~~~~----~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 150 PAHIRGKLVSFNQFAIIFGQ-------LVVYFVNYFIARSGDAS----WLNTDGWRYMFASEAIPALLFLMLLYFVPETP 218 (479)
T ss_pred ChhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHhccCccc----ccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 77899999999999999999 88888777664321100 01347999999999888888777778899999
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q psy12745 87 KFLMTHGRSDDALDVFQSMYA 107 (175)
Q Consensus 87 ~~L~~~g~~~~a~~~l~~l~~ 107 (175)
+|+..+++.|++++.+++..+
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~ 239 (479)
T PRK10077 219 RYLMSRGKQEQAEGILRKIMG 239 (479)
T ss_pred HHHHHcCCHHHHHHHHHHHcC
Confidence 999888998888777766543
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.66 E-value=1.2e-07 Score=78.10 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHH---HHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIA---YFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lp 83 (175)
|+++|++..++.+.++++|. +++.+++ ... ....+||+.|.+..++.++.++..+++|
T Consensus 157 ~~~~r~~~~~~~~~~~~~G~-------~~~~~~~~~~~~~------------~~~~~w~~~f~~~~~~~~~~~~~~~~l~ 217 (481)
T TIGR00879 157 PKALRGALTSLYQLAITFGI-------LVAYGFGSGKVSL------------NNTLGWRIPLGLQLIPAGLLFLGLFFLP 217 (481)
T ss_pred ChhhhhhhhhHHHHHHHHHH-------HHHHHHHHHhhcC------------CCCccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77899999999999999999 8888887 222 1236999999998777777777778899
Q ss_pred CChHHHHhcCChHHHHHHHHHHh
Q psy12745 84 ESPKFLMTHGRSDDALDVFQSMY 106 (175)
Q Consensus 84 ESP~~L~~~g~~~~a~~~l~~l~ 106 (175)
|+|+++..+++.+++.+.+++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
T TIGR00879 218 ESPRWLVGKGRVEEARKSLARLR 240 (481)
T ss_pred CChHHHHHcCChHHHHHHHHHHh
Confidence 99999988888777766665543
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.60 E-value=9.4e-08 Score=80.85 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=55.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..++.+.+..+|. +++..+...+.....+.. ...++||++|+++.+++++.++.+.++||||
T Consensus 148 p~~~Rg~~~~~~~~~~~~G~-------~lg~~~~~~~~~~~~~~~----~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 148 PDRKRGFMGSWLDFGSIAGF-------VLGAGVVVLISTIVGEAN----FLDWGWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred CCCCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCHHH----hcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 88899999999999988888 888766554422111000 1247999999998877776667777899999
Q ss_pred HHHHhc
Q psy12745 87 KFLMTH 92 (175)
Q Consensus 87 ~~L~~~ 92 (175)
+|+..+
T Consensus 217 ~~~~~~ 222 (490)
T PRK10642 217 AFQQHV 222 (490)
T ss_pred hHHHHH
Confidence 997544
No 12
>PRK09952 shikimate transporter; Provisional
Probab=98.55 E-value=1e-07 Score=79.59 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..+..+.++.+|. +++..+...+.+...+.+. ..++||++|++++++.++....+..+||||
T Consensus 155 p~~~rg~~~~~~~~g~~~G~-------~l~~~~~~~l~~~~~~~~~----~~~gWr~~f~~~~~~~l~~~~l~~~~~es~ 223 (438)
T PRK09952 155 PKNKKAFYSSGVQVGYGVGL-------LLSTGLVSLISMMTTDEQF----LSWGWRIPFLFSIVLVLIALWVRNGMEESA 223 (438)
T ss_pred CCCCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHHh----hccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 88899999999999999999 8887766555332211111 237999999999888777667777899999
Q ss_pred HHHHhc
Q psy12745 87 KFLMTH 92 (175)
Q Consensus 87 ~~L~~~ 92 (175)
+|..++
T Consensus 224 ~~~~~~ 229 (438)
T PRK09952 224 EFEQQQ 229 (438)
T ss_pred hHHHHH
Confidence 997544
No 13
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.53 E-value=1.4e-07 Score=79.79 Aligned_cols=82 Identities=6% Similarity=0.013 Sum_probs=60.8
Q ss_pred CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
|++.||...++ .+++...|. +...++++.... ..+|+.++++..+++++.++..+++|||
T Consensus 372 p~~~Rg~~~g~~~~~~~~~g~-------~~p~i~g~l~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 372 PTHIRYSALAAAFNISVLVAG-------LTPTLAAWLVES------------TQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred CCccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899987775 566655555 544455555411 1368888887777777777777788999
Q ss_pred hHHHHhc-----CChHHHHHHHHHHhh
Q psy12745 86 PKFLMTH-----GRSDDALDVFQSMYA 107 (175)
Q Consensus 86 P~~L~~~-----g~~~~a~~~l~~l~~ 107 (175)
|+|+.++ ||.|||++++++++.
T Consensus 433 ~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 433 ANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cCCCCCCccccccchhhHHHHhhcccc
Confidence 9999865 999999999999973
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.28 E-value=1.9e-06 Score=71.72 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..+..+.+...|. +++.++...+.....+.+. ..++||++|+++++++++.++.+..+||||
T Consensus 154 p~~~rg~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~~~~~~----~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 154 VEGRKGFYASFQYVTLIGGQ-------LLALLVVVVLQQTLEDAEL----REWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred CCCcccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHHH----hccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 78899999999888888888 8777665544322111111 137999999999998888777788899999
Q ss_pred HHH
Q psy12745 87 KFL 89 (175)
Q Consensus 87 ~~L 89 (175)
++.
T Consensus 223 ~~~ 225 (432)
T PRK10406 223 QQE 225 (432)
T ss_pred hHH
Confidence 874
No 15
>KOG2533|consensus
Probab=98.15 E-value=1.6e-06 Score=73.65 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=57.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
.+++||...++......+|. ++|+++++++..+. +.....+||++|++.++.+++.. +..+++|+.
T Consensus 164 ~~~e~g~r~~~~~a~~~~g~-------i~ggliA~g~~~~~------~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 164 GKSERGLRMGIWYASASLGN-------IFGGLIAYGVFKLN------GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred ChhhhhhhHHHHHHhcchhh-------HHHHHHHHHhhhhc------CCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 57789999999999999999 99999999975422 21245799999999998888764 556779999
Q ss_pred hH--HHHh
Q psy12745 86 PK--FLMT 91 (175)
Q Consensus 86 P~--~L~~ 91 (175)
|. |+.+
T Consensus 231 P~~~~fl~ 238 (495)
T KOG2533|consen 231 PSKAWFLT 238 (495)
T ss_pred hhhccccc
Confidence 97 5433
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.11 E-value=6.6e-06 Score=67.40 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=52.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~lpES 85 (175)
|+++|++..++.+.+..+|. +++..++..+.+ ..+||..|++.++++++ .++.++++||+
T Consensus 108 ~~~~r~~a~~~~~~~~~lG~-------~l~~~~~~~l~~------------~~gWr~~f~~~~~l~~~~~~~~~~~lp~~ 168 (368)
T TIGR00903 108 REERRDLVISLLSFAMYLGI-------IFALAAGLKIYT------------AGGLQLLIIPIAAVAAAGIILVLAALPAL 168 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------ccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999 999988888743 36999999987676655 45557779999
Q ss_pred hHHH
Q psy12745 86 PKFL 89 (175)
Q Consensus 86 P~~L 89 (175)
|++.
T Consensus 169 p~~~ 172 (368)
T TIGR00903 169 PFQA 172 (368)
T ss_pred CCCC
Confidence 9873
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.95 E-value=3.7e-05 Score=62.37 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=55.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++.+.++.+|. +++..++..+.... ..+||+.+++..++.++.++....+||+|
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~-------~~~~~l~~~l~~~~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 130 PKHLRNKASGLLISGYAVGA-------VVAAQVYSLVVPVW----------GDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred ChhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc----------CccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 77899999999999999999 88888877664321 13599999998887777777777899999
Q ss_pred HHHHhcC
Q psy12745 87 KFLMTHG 93 (175)
Q Consensus 87 ~~L~~~g 93 (175)
++..+++
T Consensus 193 ~~~~~~~ 199 (405)
T TIGR00891 193 DWKEKHA 199 (405)
T ss_pred hHHHHhh
Confidence 8865443
No 18
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.79 E-value=5.1e-05 Score=61.06 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|+...+..+.+..+|. +++..++..+........ ...++||+++++..++.++..+....+||+|
T Consensus 126 ~~~~r~~~~~~~~~~~~~G~-------~i~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T TIGR00883 126 PPGKRGFYGSFQQVGAPVGL-------LLAALTVLLLSYLLGDDA----LLEWGWRIPFLVSAVLVLIGLYLRRNLEETP 194 (394)
T ss_pred CcccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCHHH----hhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 77899999999999999999 888877665532110000 1247999999988877776666667789998
Q ss_pred HHHHh
Q psy12745 87 KFLMT 91 (175)
Q Consensus 87 ~~L~~ 91 (175)
++..+
T Consensus 195 ~~~~~ 199 (394)
T TIGR00883 195 VFEKA 199 (394)
T ss_pred hHHHH
Confidence 77543
No 19
>PRK15075 citrate-proton symporter; Provisional
Probab=97.67 E-value=0.00011 Score=61.12 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..++......+|. +++..++..+.....+.. .+.++||++|+++.++..+.++.+...||++
T Consensus 147 p~~~rg~~~~~~~~~~~~g~-------~~g~~~g~~l~~~~~~~~----~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~ 215 (434)
T PRK15075 147 TPGRKGFYTSWQSASQQVAV-------VFAALLGYLLNQWLSPAQ----MAEWGWRIPFLIGCLIVPFIFLIRRSLEETE 215 (434)
T ss_pred CcccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHH----HhccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 88899999999988888888 777777666532210000 1247999999987666555555566788987
Q ss_pred HHHH
Q psy12745 87 KFLM 90 (175)
Q Consensus 87 ~~L~ 90 (175)
++..
T Consensus 216 ~~~~ 219 (434)
T PRK15075 216 EFLA 219 (434)
T ss_pred HHHH
Confidence 6653
No 20
>TIGR00895 2A0115 benzoate transport.
Probab=97.63 E-value=0.00016 Score=58.28 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=58.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH-HHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL-AGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~-~~~~~~~~lpES 85 (175)
|+++|+...++......+|. .+++.++..+. +..+||..+.+.++... ...+...++||+
T Consensus 135 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 135 PKRFRGTAVGLMFCGYPIGA-------AVGGFLAGWLI------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred CHHhhchhHhhHhhHHHHHH-------HHHHHHHHHHh------------hcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 77899999999999999999 88888776552 23689999888754444 345556778999
Q ss_pred hHHHHhcCChHHHHHHHHHHh
Q psy12745 86 PKFLMTHGRSDDALDVFQSMY 106 (175)
Q Consensus 86 P~~L~~~g~~~~a~~~l~~l~ 106 (175)
|++..++ +.+++.+..++..
T Consensus 196 ~~~~~~~-~~~~~~~~~~~~~ 215 (398)
T TIGR00895 196 IDFLVSK-RPETVRRIVNAIA 215 (398)
T ss_pred ChHHHhc-CHHHHHHHHHHHH
Confidence 9987665 4555555555543
No 21
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.63 E-value=5.8e-05 Score=62.55 Aligned_cols=68 Identities=15% Similarity=0.359 Sum_probs=51.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++||...++.+..+.+|. +++..++..+.... +..+..+||+.|.+.++++++. .+..+++||+
T Consensus 126 ~~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~l~~~~------~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 126 PAYFRARANALFMIAMPVTM-------ALGLILSGYILALD------GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCC------CCCCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 77899999999999999999 99888877663210 0012369999999988887765 4456678999
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 193 p~ 194 (412)
T TIGR02332 193 PD 194 (412)
T ss_pred cc
Confidence 94
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.58 E-value=0.00032 Score=57.43 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++|+...++.+.+..+|. +++..++..+. ...+||..+++.++..++. ++...++||+
T Consensus 133 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 133 GPRLRGTAVSLMYCGVPFGG-------ALASVIGVLAA------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHc------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999 88888876552 2368999998877655554 4455678999
Q ss_pred hHHHHhc
Q psy12745 86 PKFLMTH 92 (175)
Q Consensus 86 P~~L~~~ 92 (175)
|++..++
T Consensus 194 ~~~~~~~ 200 (406)
T PRK11551 194 RAFAQAA 200 (406)
T ss_pred hhHHhcc
Confidence 9886443
No 23
>KOG0252|consensus
Probab=97.55 E-value=5.6e-05 Score=63.31 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccc----cccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFD----FFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~----~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
.+++||...+.....++.|. +.|.+++..+.... .....+ .+.+--||+.+.++.+|++..+.-|..|
T Consensus 174 n~~~RGa~iaavFa~Qg~Gi-------laG~ivt~Iv~~~f-e~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M 245 (538)
T KOG0252|consen 174 NKKTRGAFIAAVFAMQGFGI-------LAGGIVALIVSAIF-EKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM 245 (538)
T ss_pred hhccccceeEEEEEecchhH-------hhccHHHHHHHHHH-hccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 78899999999999999998 77777766654321 000011 0233569999999999999999999999
Q ss_pred CCChHHHH-hcCChHHH
Q psy12745 83 PESPKFLM-THGRSDDA 98 (175)
Q Consensus 83 pESP~~L~-~~g~~~~a 98 (175)
|||+||-. ..++.++|
T Consensus 246 ~Et~~Y~al~~~~~~~a 262 (538)
T KOG0252|consen 246 PETARYTALVSKKLKQA 262 (538)
T ss_pred CcchhHHHHhhcCHhhh
Confidence 99999973 33444444
No 24
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.48 E-value=0.00032 Score=56.50 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=52.8
Q ss_pred ccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh-
Q psy12745 3 DISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF- 81 (175)
Q Consensus 3 ~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~- 81 (175)
|.. |+++|++..++...++.+|. ++++.++..+.+.....+ ...++||.+|++.++..++..+..++
T Consensus 110 ~~~-~~~~r~~~~~~~~~~~~~G~-------~~~~~l~~~l~~~~g~~~----~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 110 EIL-SDEELGYGSTIYIVGYRAGM-------LLSGSLALVLASPEFANT----GLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred HhC-CHhhhchHHHHHHHHHHHHH-------HHHHHHHHHHhhhccccc----ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 444 78899999999999999999 999988877654431111 13467999999998877776555443
Q ss_pred cCCCh
Q psy12745 82 IPESP 86 (175)
Q Consensus 82 lpESP 86 (175)
.||++
T Consensus 178 ~~e~~ 182 (356)
T TIGR00901 178 AKEPQ 182 (356)
T ss_pred ccCCC
Confidence 57864
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.46 E-value=0.00032 Score=59.02 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++....+.+|. +++..++..+.+ ..+||+.+.+..++.++.++....+||++
T Consensus 138 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 138 PKHLRNKASGFLISGFSIGA-------VVAAQVYSLVVP------------VWGWRALFFIGILPIIFALWLRKNLPEAE 198 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------cCCHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 67789999999999999999 888888776633 36999999987776666666677789999
Q ss_pred HHHHhc
Q psy12745 87 KFLMTH 92 (175)
Q Consensus 87 ~~L~~~ 92 (175)
+|...+
T Consensus 199 ~~~~~~ 204 (496)
T PRK03893 199 DWKEKH 204 (496)
T ss_pred hhhhhc
Confidence 885443
No 26
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.43 E-value=0.00058 Score=56.18 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++...++.+|. +++..++..+... ..+||.+|++.++..++..+..+++||++
T Consensus 124 ~~~~r~~~~~~~~~g~~~g~-------i~g~~l~~~l~~~-----------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 124 HPEERGAGAAVKVLGYRLAM-------LVSGGLALWLADR-----------VLGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred ChhhhhHHHHHHHHHHHHHH-------HHHhHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 78889999999999999999 9988887776432 14999999988777666555566788876
Q ss_pred HH
Q psy12745 87 KF 88 (175)
Q Consensus 87 ~~ 88 (175)
+.
T Consensus 186 ~~ 187 (402)
T PRK11902 186 VP 187 (402)
T ss_pred cc
Confidence 53
No 27
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.38 E-value=0.00068 Score=57.66 Aligned_cols=63 Identities=6% Similarity=0.083 Sum_probs=51.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..++...++.+|. +++..++..+... .++||.+|++.++..++..+..+++||+|
T Consensus 137 ~~~~rg~~~~i~~~g~~lG~-------llg~~l~~~l~~~-----------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 137 PAEERGAGAAISVLGYRLAM-------LVSGGLALWLADR-----------YLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred ChhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77899999999999999999 9988887776331 25999999998887777666666789987
Q ss_pred H
Q psy12745 87 K 87 (175)
Q Consensus 87 ~ 87 (175)
+
T Consensus 199 ~ 199 (491)
T PRK11010 199 D 199 (491)
T ss_pred c
Confidence 4
No 28
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.34 E-value=0.00025 Score=59.39 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=49.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCccccccccc-chHHHHHHhhHHHHHHHHH-HhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMC-SWRIFLIVSTFPSLAGALL-VFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~Wr~~~~~~~i~~~~~~~~-~~~lpE 84 (175)
|+++|++..++...+..+|. +++..++..+.. .+ +||++|++.++++++..+. ..+.+|
T Consensus 161 ~~~~r~~~~~~~~~~~~~g~-------~i~~~l~~~l~~------------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 161 PPKERSRLLGMSTSGFQLGT-------FIFLPISGWLCE------------SWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------ccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 78899999999999999999 888888766632 23 8999999998877765444 445678
Q ss_pred ChH
Q psy12745 85 SPK 87 (175)
Q Consensus 85 SP~ 87 (175)
+|+
T Consensus 222 ~p~ 224 (465)
T TIGR00894 222 DPS 224 (465)
T ss_pred Ccc
Confidence 885
No 29
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.33 E-value=0.00051 Score=56.60 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++...++.+|. +++..+...+. +..+||+++++..++.++.+......||++
T Consensus 136 ~~~~r~~~~~~~~~~~~lg~-------~~~~~l~~~l~------------~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 136 PKHLKSKASAFLVSGFGIGN-------IIAAYFMPSFA------------EAYGWRAAFFVGLLPVLLVIYIRARAPESK 196 (426)
T ss_pred CHhHhhHhhhHHHHHHhHHH-------HHHHHHHHHHc------------ccCCHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence 77899999999999999999 88876655542 235899999987666555555556679998
Q ss_pred HHHH
Q psy12745 87 KFLM 90 (175)
Q Consensus 87 ~~L~ 90 (175)
+|..
T Consensus 197 ~~~~ 200 (426)
T PRK12307 197 EWEE 200 (426)
T ss_pred HHHH
Confidence 7753
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.16 E-value=0.00043 Score=55.41 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES 85 (175)
|+++|++..++.+....+|. ++++.++..+.. ..+||+.+.+.+++.++..+ ..++.||+
T Consensus 112 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 112 PASERATAVSIFNSAQGLGG-------IIGGPLVGWILI------------HFSWQWAFIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred CHHHHHHHHHHHHHhchHHH-------HHHHHHHHHHHH------------hCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence 77899999999999999999 999888776532 35899999988777666543 34456776
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 173 ~~ 174 (399)
T TIGR00893 173 PQ 174 (399)
T ss_pred CC
Confidence 63
No 31
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.94 E-value=0.0019 Score=53.86 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++||+..++.+...++|. ++++.++..+.. ..+||+.+.+.+++.++. ++..+++||+
T Consensus 141 ~~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 141 SRTERGGWWAIWNTAHNVGG-------ALIPLVVGAIAL------------HYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------cccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77899999999999999999 888877666532 369999999887766554 4455678999
Q ss_pred hHHH
Q psy12745 86 PKFL 89 (175)
Q Consensus 86 P~~L 89 (175)
|++.
T Consensus 202 p~~~ 205 (434)
T PRK11663 202 PQAM 205 (434)
T ss_pred Hhhc
Confidence 9764
No 32
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0036 Score=51.87 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=48.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lp 83 (175)
|+++|++.++....+.+++. ++|.-++.++- +.+|||..|..-+..+++.+ ..+..+|
T Consensus 131 pp~~~~~Aiaiv~~G~tlA~-------v~GvPLGt~ig------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 131 PPGKRGRALALVFTGLTLAT-------VLGVPLGTFLG------------QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred CccchhhHHHHHHHHHHHHH-------HHhccHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999 88888877773 34799999998888888754 4566688
No 33
>PRK03545 putative arabinose transporter; Provisional
Probab=96.76 E-value=0.0035 Score=51.25 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=47.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..++.+.+.++|. ++++.++..+.. ..+||+.|.+.++.+++.. +..+++||.
T Consensus 127 ~~~~r~~~~g~~~~~~~~g~-------~ig~~l~~~l~~------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 127 PAGKKAQALSLLATGTALAM-------VLGLPLGRVIGQ------------YLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred ChhhhhhHHHHHHHHHHHHH-------HHHhhHHHHHHH------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78899999999999999999 888888766632 2599999999887766643 445557876
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
|
T Consensus 188 ~ 188 (390)
T PRK03545 188 P 188 (390)
T ss_pred C
Confidence 5
No 34
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.65 E-value=0.0057 Score=50.72 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES 85 (175)
|+++|++..++......+|. +++..++..+.. ..+||+.|++.++..++..+. .+++||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~-------~~g~~lg~~l~~------------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~ 194 (413)
T PRK15403 134 GQTKGIKLMAIITSIVLVAP-------IIGPLSGAALMH------------FVHWKVLFAIIAVMGLIAFVGLLLAMPET 194 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67788999999888889998 888888877632 259999999888876665443 5568998
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
++
T Consensus 195 ~~ 196 (413)
T PRK15403 195 VK 196 (413)
T ss_pred cc
Confidence 64
No 35
>PTZ00207 hypothetical protein; Provisional
Probab=96.51 E-value=0.0065 Score=53.00 Aligned_cols=81 Identities=7% Similarity=-0.088 Sum_probs=51.8
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHH--HhhcCC
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALL--VFFIPE 84 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~--~~~lpE 84 (175)
+++||...++...+.++|. .+.+.+...+.. .+|+..+++.++.+++. ++. ....|+
T Consensus 150 p~~RG~a~Gi~~~~~gLGs-------aI~~~l~~~l~~-------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 150 PSNRGAVVAIMKTFTGLGS-------AILGSIQLAFFS-------------DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred hhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 3689999999999999999 654444333311 35766666555544442 333 333588
Q ss_pred ChHHHHhcCChHHHHHHHHHHhhc
Q psy12745 85 SPKFLMTHGRSDDALDVFQSMYAR 108 (175)
Q Consensus 85 SP~~L~~~g~~~~a~~~l~~l~~~ 108 (175)
+|+|..++++.+++++..+++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~ 233 (591)
T PTZ00207 210 FHLTGYQEKHLDEEEKAQRLMRKG 233 (591)
T ss_pred chhhcccccCCCHHHHHHHhhhhh
Confidence 888877776667777766665443
No 36
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.51 E-value=0.0044 Score=49.88 Aligned_cols=63 Identities=11% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCCCchhh--HHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcC
Q psy12745 7 TKRDTKKI--IYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lp 83 (175)
|++.|+.. .+......++|. ++++.++..+.. ..+||+.|++.+++.++..+ ..+++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~-------~ig~~~~~~l~~------------~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 117 DRTGREAVMFSSVMRAQISLAW-------VIGPPLAFWLAL------------GFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred hhcchhhHHHHHHHHHHHhHHH-------HHhhhHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44455532 466666777888 888877766632 35899999998887666544 455689
Q ss_pred CChHH
Q psy12745 84 ESPKF 88 (175)
Q Consensus 84 ESP~~ 88 (175)
|+|+.
T Consensus 178 ~~~~~ 182 (375)
T TIGR00899 178 SYPRG 182 (375)
T ss_pred CcccC
Confidence 98854
No 37
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.50 E-value=0.005 Score=52.30 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++|++..++....+.+|. ++++.++..+.. ..+||+.|++.....++. .+..+++||+
T Consensus 125 ~~~~r~~~~g~~~~~~~~g~-------~~gp~lgg~l~~------------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 125 EEKQRNMALGVWAAVGSGGA-------AFGPLVGGILLE------------HFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhc------------cCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67799999999999999999 999999888743 359999999876655553 4455668887
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 186 ~~ 187 (495)
T PRK14995 186 AG 187 (495)
T ss_pred CC
Confidence 63
No 38
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0037 Score=52.02 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=47.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHH--HHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIA--YFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~--~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lp 83 (175)
|++.||...++.+.+.++|. .+...+. ..+. .+.+||..|++.++.+++. ++..+.+.
T Consensus 147 sr~eRG~~~siWn~shNiGG-------al~~~~~~la~~~------------~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 147 SRKERGTWWSIWNTSHNIGG-------ALAPLVALLAFFA------------FHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred CccccCceEEEehhhhhccc-------chHHHHHHHHHHH------------hccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 78899999999999999999 5555554 2221 2359999999999988875 45566678
Q ss_pred CChH
Q psy12745 84 ESPK 87 (175)
Q Consensus 84 ESP~ 87 (175)
|+|+
T Consensus 208 d~Pq 211 (448)
T COG2271 208 DRPQ 211 (448)
T ss_pred CCcc
Confidence 8883
No 39
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.39 E-value=0.011 Score=49.22 Aligned_cols=64 Identities=8% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++||...++.+...++|. .+++.+...... ...+||..|++.++++++. ++..+++||+
T Consensus 148 ~~~~rg~~~~~~~~~~~~g~-------~~~~~l~~~~~~-----------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 148 SQSERGTIVSIWNCAHNIGG-------GIPPLLVLLGMA-----------WFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred CcccchhHHHHHHHHHHhHh-------HHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 77899999999999999988 776655433211 1248999999988876664 4556678998
Q ss_pred hHH
Q psy12745 86 PKF 88 (175)
Q Consensus 86 P~~ 88 (175)
|+.
T Consensus 210 ~~~ 212 (438)
T TIGR00712 210 PQS 212 (438)
T ss_pred HHh
Confidence 865
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.32 E-value=0.01 Score=48.43 Aligned_cols=61 Identities=11% Similarity=0.236 Sum_probs=45.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..+....+..+|. .++..++..+. +..+||+.+.+.++..++.. ...+++||.
T Consensus 121 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 121 KPGKVTAAVAGMVSGMTVAN-------LLGIPLGTYLS------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred ChHHhhHHHHHHHHHHHHHH-------HHhccHHHHHh------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66789999998888888888 77777766552 23689999999887766543 345568886
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 182 ~ 182 (382)
T PRK10091 182 R 182 (382)
T ss_pred C
Confidence 5
No 41
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.25 E-value=0.0093 Score=52.07 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=36.5
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH--H
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL--V 79 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~--~ 79 (175)
+|+. |.|.|+....+......... ..+..++..+. ...+|||.+++.++...+.+++ .
T Consensus 156 sEl~-p~k~R~~~~~~~~~~~i~~~-------~~~~~ia~~~~------------~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 156 SELV-PNKWRGLGLAIASIPFIITT-------WISPLIAQLFA------------AHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhc-ccchhhhHhHHHHHHHHhhh-------cccHHHHHHhc------------cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3555 67788776665554433333 34455555442 2359999999998866654333 3
Q ss_pred hhcCC
Q psy12745 80 FFIPE 84 (175)
Q Consensus 80 ~~lpE 84 (175)
++.|.
T Consensus 216 fY~PP 220 (599)
T PF06609_consen 216 FYFPP 220 (599)
T ss_pred HhCCC
Confidence 34453
No 42
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.22 E-value=0.015 Score=39.45 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|+...+..+....+|. .+++.+...+.. ..+|+..+.+..+..++.. ...++.||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGP-------LLGPPLGGVLAQ------------FLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHH-------HHhHHhHHHHhc------------ccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 77899999999999999999 888888777632 3589998888777666544 344455664
No 43
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.21 E-value=0.011 Score=48.72 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..+.....+++|. +++..++..+.. ..+||+.|++.++.+++.. +....+||+
T Consensus 138 ~~~~~~~a~~~~~~~~~~g~-------~ig~~l~~~l~~------------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 138 PPRTVPKALSVIFGAVSIAL-------VIAAPLGSFLGE------------LIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------hcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 67799999999999999999 999988887743 3699999998877666543 334457887
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 199 ~~ 200 (394)
T PRK10213 199 PG 200 (394)
T ss_pred Cc
Confidence 63
No 44
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.20 E-value=0.015 Score=46.89 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..++.+....+|. ++++.++..+.. ..+||..+.+.++..++.. +..++.||+
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 123 PGEELSRIYSILMPVLALAP-------AVAPLLGGYILV------------WLSWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77899999999999999999 888888766532 3589999988777666543 445567887
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
++
T Consensus 184 ~~ 185 (385)
T TIGR00710 184 LP 185 (385)
T ss_pred CC
Confidence 64
No 45
>KOG2532|consensus
Probab=96.19 E-value=0.012 Score=50.01 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=49.5
Q ss_pred cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHH-hhcCC
Q psy12745 6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV-FFIPE 84 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~-~~lpE 84 (175)
.|+++|+++.++...+..+|. +++..++-.+... ..||+.+|++.++.+++..++. ++-.|
T Consensus 157 ~P~~Ers~~~ail~~g~q~g~-------v~~mp~sg~lc~s-----------~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 157 APPNERSTFIAILTAGSQLGT-------IITMPVSGLLCES-----------SLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHhcc-----------CCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999999999 8887555555322 3699999999999888866553 44578
Q ss_pred Ch
Q psy12745 85 SP 86 (175)
Q Consensus 85 SP 86 (175)
+|
T Consensus 219 ~P 220 (466)
T KOG2532|consen 219 SP 220 (466)
T ss_pred Cc
Confidence 88
No 46
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.19 E-value=0.0095 Score=47.37 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=41.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
|+++|++..++.+....+|. ++++.++..+.. ..+||+.+.+.++..++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~g~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 122 PEEQLTQANSLSQAVRSLFY-------IVGPGIGGLMYA------------TLGIKWAIWVDAVGFAISAL 173 (365)
T ss_pred CHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999 999988877743 35899999888776555433
No 47
>PRK12382 putative transporter; Provisional
Probab=96.15 E-value=0.019 Score=46.83 Aligned_cols=61 Identities=8% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++.+.+...|. ++++.++..+.. ..+||..+.+..+..++.+......||.|
T Consensus 142 ~~~~r~~a~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 142 GPKHSGKVMSWNGMAMYGAL-------AAGAPLGLLLHS------------HFGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred CccccchhhhHHHHHHHHHH-------HHHHHHHHHHHh------------ccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 67899999999999999988 888888766632 25899987776555444444444456654
No 48
>PRK10489 enterobactin exporter EntS; Provisional
Probab=95.98 E-value=0.018 Score=47.51 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=48.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++......+|. ++++.++..+.. ..+||+.+.+..+..++..+..+.+||+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~g~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 140 GRENLMQAGAITMLTVRLGS-------VISPALGGLLIA------------AGGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred CHHHHHHHHHHHHHHHhHHH-------HhHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67789999999989999999 888888776633 24899988888777666666666788876
Q ss_pred H
Q psy12745 87 K 87 (175)
Q Consensus 87 ~ 87 (175)
+
T Consensus 201 ~ 201 (417)
T PRK10489 201 P 201 (417)
T ss_pred C
Confidence 4
No 49
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=95.93 E-value=0.027 Score=45.42 Aligned_cols=61 Identities=20% Similarity=0.417 Sum_probs=47.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++|++..++.+....+|. .+++.++..+.. .++||+.+.+.++..++. ++..+++||+
T Consensus 109 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 109 PKEEFSRMMSFVTLVMTIAP-------LLAPIIGGWLLV------------WFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 67789999999999999999 888888766632 368999998877766654 3445667887
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 170 ~ 170 (377)
T PRK11102 170 L 170 (377)
T ss_pred C
Confidence 5
No 50
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.88 E-value=0.014 Score=48.09 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=49.6
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~ 80 (175)
.|++.++++|++..++.+.+.++|. ++++.+...+.... .+..+..+||+++.+.++.+++.. +..+
T Consensus 125 ~~~~~~~~~R~~~~~~~~~~~~~g~-------~l~~~~~~~l~~~~-----~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 125 PAITLDPRERESLSTFRRFGATLGG-------LLVAVIVLPLVSYF-----GGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----CCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 4666677889999999999999988 77766644443211 000124689999988888776654 4455
Q ss_pred hcCCCh
Q psy12745 81 FIPESP 86 (175)
Q Consensus 81 ~lpESP 86 (175)
+.+|.+
T Consensus 193 ~~~e~~ 198 (437)
T TIGR00792 193 GTKERY 198 (437)
T ss_pred CCEecC
Confidence 678865
No 51
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=95.88 E-value=0.0061 Score=48.30 Aligned_cols=61 Identities=23% Similarity=0.504 Sum_probs=46.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES 85 (175)
|+++|++..+..+....+|. ++++.++..+.. ..+||+.+++.++..++..++ ..+++|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 115 PPEERGRAFGILSAGFSLGS-------ILGPLLGGFLIS------------YFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CTCCHHHHHHHHHHHHHHHH-------HHHHHHHHHCCC------------HCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhhhhccccccchhhhhh-------hcccchhhhhhh------------ccccccccccccchhhhhhhhHhhhhhhc
Confidence 67899999999999999999 999999888732 358999999998877776543 3455555
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
|
T Consensus 176 ~ 176 (352)
T PF07690_consen 176 P 176 (352)
T ss_dssp S
T ss_pred c
Confidence 5
No 52
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=95.80 E-value=0.039 Score=45.30 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES 85 (175)
|+++|++..++......+|. ++++.++..+.. ..+||+.+++.++..++..+ ..+.+||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (406)
T PRK15402 131 EEADAIKITALMANVALLAP-------LLGPLVGAALIH------------VLPWRGMFVLFAALAALSFFGLWRAMPET 191 (406)
T ss_pred ChhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------ccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66778887777777777777 777777665532 25899999887777665443 44567888
Q ss_pred hHH
Q psy12745 86 PKF 88 (175)
Q Consensus 86 P~~ 88 (175)
++.
T Consensus 192 ~~~ 194 (406)
T PRK15402 192 AGR 194 (406)
T ss_pred Ccc
Confidence 643
No 53
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=95.78 E-value=0.034 Score=45.40 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++.+....+|. +++..++..+.. ..+||..+++..+.+++..+.....||++
T Consensus 142 ~~~~r~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (399)
T PRK05122 142 GALHTGRVISWNGIATYGAL-------AIGAPLGVLLYH------------WGGLAGLGLLIMLLALLGLLLARPRPAVP 202 (399)
T ss_pred ChhhhccchhhhhhhhhHHH-------HHHHHHHHHHHH------------cccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 77899999999988888888 888888766633 36899998877666555444444455543
No 54
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.71 E-value=0.0097 Score=49.77 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..++......+|. .+++.++..+. +..+||+.|++..+++++.. +..+++||.
T Consensus 120 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 120 PPEKRGRAMAIWGLTVLVAP-------ALGPTLGGWII------------ENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHh-------hhhhccHhHhc------------cCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 77799999999999999999 88888876662 23699999998877666543 445567775
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
++
T Consensus 181 ~~ 182 (485)
T TIGR00711 181 KP 182 (485)
T ss_pred cc
Confidence 53
No 55
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.69 E-value=0.031 Score=49.27 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC-----c---cccccccc--chHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY-----P---VFDFFLMC--SWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~-----~---~~~~~~~~--~Wr~~~~~~~i~~~~~~ 76 (175)
|+++|++..++.+....+|. ++|.+++..+....... + .......| +||..|++.+++.++..
T Consensus 202 ~~~~~~~~~~i~~~~~~iG~-------~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 202 KSKNSPLYIGILESIAVFGP-------AFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred CccccHHHHHHHHHHHHhhh-------HHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999 99988877776532110 0 00000112 38888888887777655
Q ss_pred HHHhhcCCC
Q psy12745 77 LLVFFIPES 85 (175)
Q Consensus 77 ~~~~~lpES 85 (175)
+..+++|+.
T Consensus 275 v~l~~~p~~ 283 (633)
T TIGR00805 275 IPFFFFPKA 283 (633)
T ss_pred HHHHhCccc
Confidence 555566654
No 56
>PRK11043 putative transporter; Provisional
Probab=95.60 E-value=0.045 Score=44.75 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=42.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|+...+.......+|. .+++.++..+.. ..+||..+.+..+..++..+..++++|++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 124 PAQKANRVFATIMPLVALSP-------ALAPLLGAWLLN------------HFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred CcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------cCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 66677777777666777777 777777665532 35999999988777776655555666654
No 57
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.57 E-value=0.038 Score=45.09 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=46.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..++.+....+|. ++++.++..+.. ..+||..+.+.++.+++.. +...++||+
T Consensus 121 ~~~~r~~~~~~~~~~~~i~~-------~~~~~i~~~l~~------------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 121 DDRRRAKVLSLLNGITCIIP-------VLAPVLGHLIML------------KFPWQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------CcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67799999999998888888 888888776632 3589999988877666543 345667887
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 182 ~ 182 (392)
T PRK10473 182 R 182 (392)
T ss_pred C
Confidence 5
No 58
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.41 E-value=0.029 Score=46.20 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|++..++.+....+|. ++|+.++-.+.. +.|+.++.+.....++..+..+++||+|
T Consensus 118 ~~~~~~~a~~~~~~~~~~~~-------~~Gp~lgG~l~~-------------~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 118 PGEKLVKANGWMEGSTIAAI-------LLGTVLGGALAD-------------PHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 77899999999999999999 999988877632 3477777766555444455567789987
Q ss_pred HH
Q psy12745 87 KF 88 (175)
Q Consensus 87 ~~ 88 (175)
..
T Consensus 178 ~~ 179 (393)
T PRK11195 178 AR 179 (393)
T ss_pred cc
Confidence 54
No 59
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.35 E-value=0.042 Score=44.85 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++|+...+..+.+..+|. ++++.++..+.. ..+||..+.+.++..++. .+..+++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 126 EGTQLRHANSLLNMGILVSP-------LLAPLIGGLLTT------------LFGWRACYLFLLLLGAGVTFSMARWMPET 186 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------ccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 55678888888888888888 888877766532 358999999887766554 3445668998
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 187 ~~ 188 (394)
T PRK11652 187 RP 188 (394)
T ss_pred Cc
Confidence 64
No 60
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=95.22 E-value=0.041 Score=44.85 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=45.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..+.......+|. ++++.++..+.. ..+||..+.+.++..++.. +..+++||.
T Consensus 136 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 136 PRNKSGWALGTLSTGGVSGA-------LLGPLAGGLLAD------------SYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred CHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 77889999999999889988 888887766632 3589999988877665543 344556776
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 197 ~ 197 (408)
T PRK09874 197 F 197 (408)
T ss_pred c
Confidence 4
No 61
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=95.19 E-value=0.055 Score=45.31 Aligned_cols=64 Identities=11% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++|+...++.+.+.++|.. +.+.++...+.. ..+||+.|++.+++.++. ++..+++||+
T Consensus 150 ~~~~r~~~~~~~~~~~~~g~~------~~~~l~~~~~~~------------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 150 SQKERGGIVSVWNCAHNVGGG------LPPLLFLLGMAW------------FNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred ChHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH------------hccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 778999999999898888761 334443333311 148999999887766654 4556678999
Q ss_pred hHH
Q psy12745 86 PKF 88 (175)
Q Consensus 86 P~~ 88 (175)
|+.
T Consensus 212 ~~~ 214 (452)
T PRK11273 212 PQS 214 (452)
T ss_pred Hhh
Confidence 865
No 62
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.02 E-value=0.017 Score=46.16 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=46.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHH-HHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGL-VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpE 84 (175)
|+++|+...++.+....+|. ++++ +++..+. ...+||+.+++.++..++. ++..++.||
T Consensus 113 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 113 SRSERGTWVSFWNCSHNVGG-------GLLPPLVLFGIA------------ELYSWHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred CHhhheeeEeehhccchhHH-------HHHHHHHHHHHH------------hcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence 77789999999999999999 8888 4555442 2358999998877766554 444556788
Q ss_pred ChH
Q psy12745 85 SPK 87 (175)
Q Consensus 85 SP~ 87 (175)
+|+
T Consensus 174 ~~~ 176 (379)
T TIGR00881 174 SPQ 176 (379)
T ss_pred Ccc
Confidence 775
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.97 E-value=0.081 Score=43.64 Aligned_cols=58 Identities=9% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpE 84 (175)
|+++|++..++.....++|. .+++.++-.+. .++||+.|++.++..++.. +..+++||
T Consensus 129 ~~~~~~~a~~~~~~~~~~g~-------~ig~~l~g~l~-------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 129 RPHQRGRFFSLLMMQDSAGA-------VIGALLGSWLL-------------QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 77899999999999999999 88888877763 2699999998877655543 33445666
No 64
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=94.65 E-value=0.074 Score=42.36 Aligned_cols=60 Identities=12% Similarity=-0.073 Sum_probs=41.2
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCCh
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPESP 86 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpESP 86 (175)
+++|++..++...+.++|. +++..+...+. +..+||+.+++.++..++..+. .++++|.|
T Consensus 121 ~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 121 PDKRGLASGIIIGGYGLGS-------FILSPLITSVI------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred CcccHHHHHHHHHhcchhH-------hHHHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 3579999999999999988 65444433331 2368999999888877665433 44555544
No 65
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.43 E-value=0.094 Score=42.99 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=40.1
Q ss_pred hhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCCh
Q psy12745 12 KKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPESP 86 (175)
Q Consensus 12 g~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpESP 86 (175)
+...+..+...++|. ++++.++..+.. ..+||..|++.++..++.. +...++||+|
T Consensus 142 ~~~~~~~~~~~~lg~-------~~g~~i~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 142 VMFSSFLRAQVSLAW-------VIGPPLAYALAM------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHH-------HHhhHHHHHHHH------------hcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 344567777888888 888888877633 2599999998877666543 4455678875
No 66
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=94.33 E-value=0.18 Score=41.18 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=39.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
+++.++...+....+..+|. +++......+.. ..+||.+|++.++..++..+...+++|
T Consensus 127 ~~~~~~~~~~~~~~g~~lG~-------~~g~~~~~~l~~------------~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 127 NGRTLAKGNAVQIAGVMIGF-------FGGGAGTLVLFG------------KFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred CHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555667777777778888 877765544422 359999999888776665444444443
No 67
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=94.00 E-value=0.16 Score=47.23 Aligned_cols=72 Identities=8% Similarity=-0.030 Sum_probs=44.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhh-HHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVST-FPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~-i~~~~~~~~~~~lpES 85 (175)
|+++|++..++.+.+..+|. +++++++..+.......... ...+|++.+.+.. +..++.++..+++||+
T Consensus 133 ~~~~r~~~~~~~~~~~~ig~-------~lg~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1146)
T PRK08633 133 GKENLSRANGLLEAFTIVAI-------LAGTALFSFLFESVNGNTPS---EILGRIAPAGLVLLAVAVLGLIFAYRLPKV 202 (1146)
T ss_pred CcccchhhhhHHHHHHHHHH-------HHHHHHHHHHHHhhcccccc---ccccchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 67899999999999999999 99998887774421000000 0123444443333 3333444556678998
Q ss_pred hHH
Q psy12745 86 PKF 88 (175)
Q Consensus 86 P~~ 88 (175)
|.+
T Consensus 203 ~~~ 205 (1146)
T PRK08633 203 PAA 205 (1146)
T ss_pred CCC
Confidence 865
No 68
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=93.92 E-value=0.13 Score=48.12 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++|+...++.+...++|. ++|+.++-.+... .+||+.|++..+..++.++..+++||++
T Consensus 138 ~~~~~~~a~~~~~~~~~ig~-------~igp~l~g~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 138 NKDELLGANALVEAGTFIAI-------LLGTIIGGLATIS------------GNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred CccccchhhHHHHHHHHHHH-------HHHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 67899999999999999999 9999998887443 5899998666666666666666777764
No 69
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.88 E-value=0.11 Score=40.73 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=44.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
|+++|++..++.+....+|. .+++.++..+.+. .+||..+.+.+++.++..+...++
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 117 PPKERGRALGLFSAGFGLGA-------LLGPLLGGLLAES------------LGWRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred CccchhhhhhHHHHHHHHHH-------HHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 9999888877433 479999988877766654443333
No 70
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=93.85 E-value=0.18 Score=42.21 Aligned_cols=67 Identities=7% Similarity=-0.087 Sum_probs=42.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|++.|+...++......+|. ++++.+.-.+.... . . .+..+|+..+.+.++.+++.. +..++.||+
T Consensus 394 p~~~r~~~~g~~~~~~~~g~-------~~~~~~~p~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 394 PNAIRGKALAIAVAAQWIAN-------YFVSWTFPMMDKNS--W-L---VAHFHNGFSYWIYGCMGVLAALFMWKFVPET 460 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhcc--c-h---hhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence 88899999999999888888 77655543221000 0 0 123678887777666555543 444567887
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
.
T Consensus 461 ~ 461 (479)
T PRK10077 461 K 461 (479)
T ss_pred C
Confidence 4
No 71
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=93.67 E-value=0.095 Score=43.58 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=46.8
Q ss_pred CCCCchhhHHHhH-HHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRR-VDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpE 84 (175)
|++.||...++.+ ..+.+|. ++++.++-.+.... +..+..+||..+.+.+++.++. ++..++++|
T Consensus 338 p~~~~g~~~g~~~~~~~~lg~-------~iGp~l~G~l~~~~------g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 338 PVHIRASAQGLFTLMCNGFGS-------LLGYILSGVMVEKM------FAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHh------ccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8889999999996 6788898 88888876664321 0001147999998887776654 455666787
Q ss_pred C
Q psy12745 85 S 85 (175)
Q Consensus 85 S 85 (175)
+
T Consensus 405 ~ 405 (418)
T TIGR00889 405 S 405 (418)
T ss_pred c
Confidence 7
No 72
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=93.66 E-value=0.084 Score=44.39 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=38.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCccccccccc-chHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMC-SWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~Wr~~~~~~~i~~~~~~ 76 (175)
|++++|...++.+....+|. ++++.++-.+.. .. +|+..+.+.++..++..
T Consensus 363 ~~~~~g~~~g~~~~~~~lg~-------~igp~i~G~l~~------------~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 363 GAQRFSSAVGLVTIVECCAV-------LIGPPLAGRLVD------------ATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred hHHHHhhHHhHHHHHHHHHH-------Hccccceeeeeh------------hcCCcchHHHHhhHHHHHHH
Confidence 77789999999999999999 888877665522 22 69999888877655443
No 73
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=93.65 E-value=0.13 Score=43.58 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=40.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc-CCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI-PES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l-pES 85 (175)
|+++||...++.....++|. .++..+...+....... +..+..+||+.|++.+++.++..+..+++ ++.
T Consensus 153 ~~~~rg~a~g~~~~~~~~g~-------~~~~~~~~~i~~~~~~~---~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~ 222 (476)
T PLN00028 153 NGKIVGTANGIAAGWGNLGG-------GVTQLLMPLVFPLIKDA---GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL 222 (476)
T ss_pred ChhheeHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 78899999999877766776 55544432221100000 00012489999999888776654443343 344
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
|
T Consensus 223 p 223 (476)
T PLN00028 223 P 223 (476)
T ss_pred C
Confidence 4
No 74
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=93.57 E-value=0.074 Score=44.73 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=45.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|+++||+..++.+...++|. +++..++..+.... ...+||..|.+.+++.++. ++..++.+++
T Consensus 152 ~~~~rg~a~gi~~~~~~lG~-------~l~~~i~~~~~~~~---------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~ 215 (467)
T PRK09556 152 PRRKRGRFLGFWNISHNLGG-------AGAGGVALWGANYF---------FDGHVIGMFIFPSIIALIIGFIGLRYGSDS 215 (467)
T ss_pred CccceeeeEEeeecccchhh-------hHHHHHHHHHHHhh---------ccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78899999999999999999 88877765442210 0126999888877766654 3344456777
Q ss_pred hH
Q psy12745 86 PK 87 (175)
Q Consensus 86 P~ 87 (175)
|+
T Consensus 216 p~ 217 (467)
T PRK09556 216 PE 217 (467)
T ss_pred hh
Confidence 74
No 75
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=93.52 E-value=0.13 Score=41.26 Aligned_cols=72 Identities=15% Similarity=-0.010 Sum_probs=40.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHH-HHhhHH-HHHHHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFL-IVSTFP-SLAGALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~-~~~~i~-~~~~~~~~~~lpE 84 (175)
|+++|+...++.....++|. .++..++..+....... .+.....+||+.+ +..++. .++..+...+.+|
T Consensus 120 ~~~~r~~~~~~~~~~~~~g~-------~~~~~i~~~l~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 120 PKKIQGTALGLAAGWGNMGG-------GVAQFVMPPIIGSLIFG--AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred CHhhhhHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHhc--ccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999887777777 66666654432210000 0001124899988 433333 3333444555677
Q ss_pred ChH
Q psy12745 85 SPK 87 (175)
Q Consensus 85 SP~ 87 (175)
+|+
T Consensus 191 ~~~ 193 (366)
T TIGR00886 191 TPP 193 (366)
T ss_pred CCc
Confidence 763
No 76
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.43 E-value=0.11 Score=42.41 Aligned_cols=58 Identities=12% Similarity=-0.064 Sum_probs=39.1
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
++|++..+......++|. .+++.++..+.. ..+||.+|++.++..++..+...+.||.
T Consensus 124 ~~~~~a~~~~~~~~~lg~-------~igp~lgg~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 124 KQIGLDYGKVRLWGSIAF-------VIGSALTGKLVS------------WFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred hhccCCcchHHHHHHHHH-------HHHHHHHHHHHH------------HcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 456766666777777888 888888877733 2599999987766544444444455664
No 77
>PRK03699 putative transporter; Provisional
Probab=93.33 E-value=0.26 Score=40.30 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|+++|+...+..+..+.+|. ++++.+...+.. ...+||+++.+.+++.++..+.
T Consensus 125 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~-----------~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 125 EGKQRGSRLLFTDSFFSMAG-------MIFPIIAAYLLA-----------RSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHHHHHH
Confidence 77789999888888888887 777666544321 1258999999877766654443
No 78
>PRK15011 sugar efflux transporter B; Provisional
Probab=93.14 E-value=0.24 Score=40.58 Aligned_cols=58 Identities=5% Similarity=-0.006 Sum_probs=46.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
|+ +||...++.+...++|. .+++.++-.+.. ..+|+.++.+..++.++..+..+++||
T Consensus 335 p~-~~g~~~~~~~~~~~lg~-------~~g~~l~G~i~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 335 PG-QAGSATTLYTNTSRVGW-------IIAGSLAGIVAE------------IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred CC-CcchHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 54 69999999888889999 888888776633 258999999888888877777767765
No 79
>KOG1330|consensus
Probab=92.98 E-value=0.0092 Score=50.27 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|..+|++..++.++..++|. .+|.+++..+.+.. . .||+.|...++.+++.. +++++.+|.
T Consensus 151 ~~~~Rs~~~~ify~~ipvGs-------glG~vvgs~va~~~----------~-~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 151 PDDKRSRVLGIFYFAIPVGS-------GLGYVVGSVVASLT----------F-WWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred cchhhhHHHHHhhhhccccc-------ceeEEeeeeeccCc----------c-ceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 88899999999999999999 77777766653321 1 29999999988888754 556667775
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 213 ~ 213 (493)
T KOG1330|consen 213 E 213 (493)
T ss_pred c
Confidence 4
No 80
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=92.97 E-value=0.15 Score=45.82 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=46.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|.+.||...++......+|. ++++.++..+.. .+...++++.++..++..++..++||+-
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGa-------iigp~i~g~L~~-------------~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAA-------VLGILIFGSFVG-------------ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88899999999999999999 999988755522 2356788877777777666666789974
No 81
>PRK10504 putative transporter; Provisional
Probab=92.95 E-value=0.18 Score=42.23 Aligned_cols=61 Identities=10% Similarity=0.275 Sum_probs=44.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|+...+......++|. ++++.++..+.. ..+||+.|.+......+.. +.....|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~-------~~g~~~~g~l~~------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 128 PREQYMAAMTFVTLPGQVGP-------LLGPALGGLLVE------------YASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHh------------hccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77889999999999999999 888888766632 3689999998766555443 334445654
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 189 ~ 189 (471)
T PRK10504 189 T 189 (471)
T ss_pred c
Confidence 3
No 82
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=91.92 E-value=0.27 Score=40.06 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=40.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
|+++||...++.+....+|. .+++.+.-.+. +..+|+..+.+.++..++..+...++
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~-------~~~~~~~g~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 332 PPQNRGAALGAYSVFLDLSL-------GITGPLAGLVA------------SWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH------------HHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999888888 66655544442 23589999988877766655444343
No 83
>PRK10054 putative transporter; Provisional
Probab=91.78 E-value=0.23 Score=40.91 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=44.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES 85 (175)
|+++|++..++.....++|. ++++.++..+.. .+||.+|.+.++..++.. +..+++||.
T Consensus 126 ~~~~~~~~~g~~~~~~~lg~-------~igp~l~~~l~~-------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 126 SSTSKTKIFSLNYTMLNIGW-------TVGPPLGTLLVM-------------QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67789999999999999999 888888777631 489999988877666543 334445654
No 84
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=91.68 E-value=0.62 Score=38.70 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=44.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC----ccc----------ccccccchHHHHHHhhHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY----PVF----------DFFLMCSWRIFLIVSTFPS 72 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~----~~~----------~~~~~~~Wr~~~~~~~i~~ 72 (175)
|+++|++..+..+...++|. .+++.++..+....... +.. ...+..+||+++.+.++..
T Consensus 124 ~~~~~~~~~~~~~~~~~lG~-------~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~ 196 (410)
T TIGR00885 124 PESTATRRLNLAQSFNPFGS-------IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV 196 (410)
T ss_pred CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999 88888877664321000 000 0001246999998777765
Q ss_pred HHHHHHH--hhcCC
Q psy12745 73 LAGALLV--FFIPE 84 (175)
Q Consensus 73 ~~~~~~~--~~lpE 84 (175)
++..+.. ..+||
T Consensus 197 ~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 197 LAVALLIMLTKMPA 210 (410)
T ss_pred HHHHHHHHHhcCCC
Confidence 5543332 23565
No 85
>PF13347 MFS_2: MFS/sugar transport protein
Probab=91.45 E-value=0.24 Score=41.14 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=47.2
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccc-cchHHHHHHhhHHHHHHHH-HH
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLIVSTFPSLAGAL-LV 79 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~-~~ 79 (175)
.|++..+++|.++.++.+.+..+|. ++.+.+...+.... +..+. .+|++...+.++..++..+ ..
T Consensus 129 ~~lt~~~~~R~~l~~~~~~~~~~g~-------~l~~~~~~~l~~~~------g~~~~~~~~~~~~~v~~iv~~v~~~i~~ 195 (428)
T PF13347_consen 129 PELTPDPDERTRLSSWRMIFSMIGS-------LLASFLAPILVSWF------GGGDTSNGYRWMALVLAIVGLVFFLITF 195 (428)
T ss_pred ccccccHhhhhhHHHHHHHHHHHHH-------HHHHHHhhhhhhhh------ccCccchHHHHHHHHHHHHHHHHhhhhh
Confidence 5677667799999999999988888 76666655543221 10111 3899998888777776544 45
Q ss_pred hhcCC
Q psy12745 80 FFIPE 84 (175)
Q Consensus 80 ~~lpE 84 (175)
+..+|
T Consensus 196 ~~~ke 200 (428)
T PF13347_consen 196 FFVKE 200 (428)
T ss_pred heeee
Confidence 55677
No 86
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=91.34 E-value=0.52 Score=39.41 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=35.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|++.||...++.+....+|.. +.++.+.-.+. +..+|+..|.+..+.+++.++.
T Consensus 377 p~~~~g~~~g~~~~~~~~g~~------~~g~~v~g~l~------------~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 377 PKKAAGTAAGFTGLFGYLGGS------VAASAIVGYTV------------DFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred ChhhhhhHHHHHHHHHHHHHH------HhhhhhHHHHH------------HHhcchHHHHHHHHHHHHHHHH
Confidence 888999999998877777650 33454433332 3358999888776665654433
No 87
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=91.16 E-value=0.36 Score=40.56 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=38.4
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
++|++..++.+.+..+|. .+++.++-.+.. ..+||+.|++.++..++..+
T Consensus 139 ~~r~~a~g~~~~~~~~g~-------~~~~~l~~~l~~------------~~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 139 RRRPLANGLAMAGSPVFL-------STLAPLNQYLFE------------SFGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred hhHHHHHHHHHhcccHHH-------HHHHHHHHHHHH------------HhChHHHHHHHHHHHHHHHH
Confidence 589999999999999988 777766555532 36999999998887665433
No 88
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.81 E-value=0.3 Score=39.81 Aligned_cols=46 Identities=13% Similarity=-0.095 Sum_probs=34.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFP 71 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 71 (175)
++++|++..+......++|. ++++.++..+.. ..+||..|.+..+.
T Consensus 122 ~~~~~~~~~g~~~~~~slG~-------~~g~~l~g~l~~------------~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 122 WQKQFGLDYGKVRLIGSAAF-------IIGSALFGGLIG------------MFDEQNILAILTAG 167 (382)
T ss_pred HHHHcCCCccHHHHHHHHHH-------HHHHHHHHHHHH------------HcChhHHHHHHHHH
Confidence 34577888888888888888 888887666633 36999998876554
No 89
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=90.64 E-value=0.46 Score=37.22 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=44.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
|+++|+...+..+....+|. .+++.+...+.+ ..+|+..+.+.++..++..+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~-------~i~~~i~g~l~~------------~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 295 PPEARGTASGLFNTFGSLGG-------ALGPLLAGLLLD------------TGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------ccCcchHHHHHHHHHHHHHHHhee
Confidence 67899999999999999999 888888777632 368999999988887776555433
No 90
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=90.51 E-value=0.21 Score=40.97 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=44.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES 85 (175)
|++.|+...++.+...++|. ++++.+...+.. ..+|+..|++.++.+++..+. .++.||.
T Consensus 413 p~~~~~~~~~~~~~~~~lg~-------~i~~~~~~~~~~------------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 413 PLSLRPKGISIAVAANWLAN-------FIVGFLFPTMLE------------SIGVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred ChHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCccceehhHHHHHHHHHHHHheecccC
Confidence 78899999999999999999 888776555522 257888887777766665443 4556775
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 474 ~ 474 (481)
T TIGR00879 474 K 474 (481)
T ss_pred C
Confidence 4
No 91
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=90.29 E-value=0.52 Score=40.22 Aligned_cols=42 Identities=10% Similarity=-0.007 Sum_probs=32.4
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhH
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTF 70 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i 70 (175)
+|+...++....+++|. .+++.++-.+.. ..+||+.|++..+
T Consensus 140 ~~~~~~~~~~~~~nig~-------~~g~~l~g~l~~------------~~gw~~~F~i~~i 181 (489)
T PRK10207 140 RLDGAFTLFYMSINIGS-------LISLSLAPVIAD------------KFGYSVTYNLCGA 181 (489)
T ss_pred hhhcchhHHHHHHHHHH-------HHHHHHHHHHHH------------hhChHHHHHHHHH
Confidence 45777888899999999 888877666632 3589999988654
No 92
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=89.95 E-value=0.7 Score=39.67 Aligned_cols=61 Identities=8% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHh---hHHHHHHHHHHhhcC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVS---TFPSLAGALLVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~~~~~~~~lp 83 (175)
|+++|++..+....+..+|. ++++.++-.+. ..+||....+. .....+.++.-+++|
T Consensus 144 P~kER~ratsi~~sg~~vG~-------~Ia~~L~qll~-------------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 144 PPSRYQRAAAYSRAAVLLGV-------FLSSVLGQLLV-------------TLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999 88888877742 25777644433 333333456667888
Q ss_pred CChH
Q psy12745 84 ESPK 87 (175)
Q Consensus 84 ESP~ 87 (175)
-.+|
T Consensus 204 ~~~~ 207 (511)
T TIGR00806 204 RPKR 207 (511)
T ss_pred CCch
Confidence 5544
No 93
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=89.69 E-value=0.68 Score=37.66 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=41.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|++.||...++.+....+|. .+++.++..+. +..+|+..|.+.++..++..+.
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~-------~~gp~~~G~l~------------~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGN-------VTGPLMGAAIS------------ANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred CcccceeeehHHHHHHHHHH-------HhhHHHHHHHH------------hhcchhHHHHHHHHHHHHHHHH
Confidence 77789999999888889999 88888877663 2368999999887776665444
No 94
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=89.29 E-value=0.72 Score=39.44 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=32.6
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL 73 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~ 73 (175)
+|+...++...+.++|. .+++.++..+.. ..+||+.|.+..+..+
T Consensus 147 ~~~~~~~~~~~~~~iG~-------~~gp~i~g~l~~------------~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 147 RLDGAFTMYYMSINIGS-------FFSMLATPWLAA------------KYGWSVAFALSVVGML 191 (500)
T ss_pred hhhhcchHHHHHHHHHH-------HHHHHHHHHHHH------------hhCHHHHHHHHHHHHH
Confidence 34456667788899999 888887766632 3589999998875433
No 95
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=89.08 E-value=1.1 Score=35.79 Aligned_cols=72 Identities=6% Similarity=-0.165 Sum_probs=44.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcc---cc-cccccchHHHHHHhhHHHHHHHHH--Hh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPV---FD-FFLMCSWRIFLIVSTFPSLAGALL--VF 80 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~-~~~~~~Wr~~~~~~~i~~~~~~~~--~~ 80 (175)
|++++.+..++.+.++.+|. +++++++-.+......... .. ......||+++++.+...++..+. +.
T Consensus 40 ~~~~~~~~l~~~~~~~~~G~-------~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~ 112 (310)
T TIGR01272 40 PIETAASRLALTQAFNKLGT-------TVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFL 112 (310)
T ss_pred CcchHHHHHHHHHHHhhhHH-------HHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66689999999999999999 9999998877532210000 00 001258999988554433333222 33
Q ss_pred hcCCC
Q psy12745 81 FIPES 85 (175)
Q Consensus 81 ~lpES 85 (175)
-+||.
T Consensus 113 ~~p~~ 117 (310)
T TIGR01272 113 PLPEL 117 (310)
T ss_pred cCCCC
Confidence 35664
No 96
>KOG2615|consensus
Probab=88.91 E-value=0.38 Score=40.07 Aligned_cols=70 Identities=9% Similarity=0.197 Sum_probs=43.7
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~ 80 (175)
+|+.+| +.|+..++...+.+.+|. ++|+.++..+.... ...+ ..-.-.|-++..+.+.. .....+
T Consensus 146 sdV~se-k~r~l~ms~v~~a~~lGf-------ilGPmIGgyla~f~---~~~g---~~p~alP~~~v~i~a~~~v~~~~~ 211 (451)
T KOG2615|consen 146 SDVVSE-KYRPLGMSLVGTAFGLGF-------ILGPMIGGYLAQFS---SISG---SYPFALPCLLVFILAAGDVTFFPW 211 (451)
T ss_pred HhhcCh-hhccceeeeeehhhhcch-------hhcchhhhHHHhhH---hhhc---cCchHHHHHHHHHHHHHHHHHHHH
Confidence 456644 699999999999999999 99998877763310 0111 11122223333344444 455677
Q ss_pred hcCCC
Q psy12745 81 FIPES 85 (175)
Q Consensus 81 ~lpES 85 (175)
++||+
T Consensus 212 ~lpET 216 (451)
T KOG2615|consen 212 FLPET 216 (451)
T ss_pred hCCcc
Confidence 89999
No 97
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=88.68 E-value=1 Score=38.56 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=47.8
Q ss_pred cccccCCCCc-hhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh-----ccccCCcccccccccchHHHHHHhhHHHHHH
Q psy12745 2 TDISETKRDT-KKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII-----PIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG 75 (175)
Q Consensus 2 ~~is~p~~~R-g~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~-----~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 75 (175)
+|+..|+++| +...++.+.+.++|. +++++++.... +.....+. + ....+-|..|++.++..++.
T Consensus 140 aDl~p~~~~~~~~a~~~~~~~~~lG~-------ilg~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~F~i~a~~l~i~ 210 (477)
T TIGR01301 140 ADLTGGDARRTRIANAYFSFFMAIGN-------VLGYAAGAYSGLYKIFPFTKTEAC-G-VSCANLKSCFLIDIILLAIL 210 (477)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHhccccccccc-c-cccchHHHHHHHHHHHHHHH
Confidence 4566444333 678888899999999 98888876541 11100000 0 01137899999988866664
Q ss_pred -HHHHhhcCCCh
Q psy12745 76 -ALLVFFIPESP 86 (175)
Q Consensus 76 -~~~~~~lpESP 86 (175)
.+..++.+|.|
T Consensus 211 ~l~t~~~v~E~~ 222 (477)
T TIGR01301 211 TYIALSAVKENP 222 (477)
T ss_pred HHHHeeeeeccC
Confidence 44466688976
No 98
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=88.38 E-value=0.14 Score=44.37 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIK 47 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~ 47 (175)
++++-+.+.++......+|. .+|.+++..+...+
T Consensus 171 ~~~~splYiGi~~~~~~lGP-------a~Gf~lg~~~L~~y 204 (539)
T PF03137_consen 171 SKKNSPLYIGILYAMSILGP-------ALGFLLGSFCLRIY 204 (539)
T ss_dssp -----------------------------------------
T ss_pred ccccCccchhhhhHHhhccH-------HHHHHHHHHHHhce
Confidence 67788999999999999999 88888877776543
No 99
>TIGR00898 2A0119 cation transport protein.
Probab=88.34 E-value=0.68 Score=39.11 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=44.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|.+.|+...++.+....+|. ++++.+.. + ...++..++.+.++.+++..+...++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~-------~i~p~i~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGS-------IISPFLVY-L-------------GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHH-------HHHhHHHH-H-------------HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 88899999999999888988 88887766 3 123566677776666666666667889863
No 100
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=87.57 E-value=1.2 Score=35.73 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=34.9
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL 73 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~ 73 (175)
+++|++..+..+...++|. .+++.+...+.... ..+||..+.+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~g~-------~i~~~~~~~l~~~~----------~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 117 PQRVGLMTGLYSMALMGGA-------ALAAAATVPLAQHS----------GGHWQQALAWWALPAL 165 (355)
T ss_pred cchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHH
Confidence 3589999999999999998 88887766553221 1359998876655443
No 101
>KOG3626|consensus
Probab=87.49 E-value=1.7 Score=39.14 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC--c--ccccc-ccc--chHHHHHHhhHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY--P--VFDFF-LMC--SWRIFLIVSTFPSLAGALLV 79 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~--~--~~~~~-~~~--~Wr~~~~~~~i~~~~~~~~~ 79 (175)
.+++-..+.++....-.+|- ++|.+++.++...+.+. . ..... ..| .|..=|++.+...++..+..
T Consensus 267 k~~~SplYlgi~~~~~~lGP-------aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~ 339 (735)
T KOG3626|consen 267 KKKNSPLYLGILYSMAILGP-------AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL 339 (735)
T ss_pred cccCCcHHHHHHHHHHHhhh-------HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45577889999999999999 88888888877765433 1 11111 112 46666777766666666666
Q ss_pred hhcCCCh
Q psy12745 80 FFIPESP 86 (175)
Q Consensus 80 ~~lpESP 86 (175)
+++|...
T Consensus 340 f~fPk~l 346 (735)
T KOG3626|consen 340 FFFPKEL 346 (735)
T ss_pred HhCcccC
Confidence 6776553
No 102
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=87.34 E-value=2.1 Score=35.14 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|+++||+..++.+...++|.. ++++.++-.+
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~------~~g~~~~~~l 165 (402)
T TIGR00897 135 KQDNLSSAVGWFWAVYSIGIG------VFGSYYSSYA 165 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhc
Confidence 778999999999999888850 3566665444
No 103
>PRK12382 putative transporter; Provisional
Probab=86.95 E-value=1.1 Score=36.53 Aligned_cols=53 Identities=4% Similarity=-0.035 Sum_probs=41.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|+++||...++.+....+|. .+++.+.-.+.. ..+|+..+.+.++..++..+.
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~-------~ig~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAY-------GVSGPLAGMLAT------------SFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCchHHHHHHHHHHHHHHHH
Confidence 77899999999999999998 888877666532 358999999888776665443
No 104
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=86.57 E-value=2.4 Score=34.76 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG 75 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 75 (175)
+++|++..+....+.+.|. .++..++..+.... .+||..+.+..++.++.
T Consensus 127 ~~~~~~~~g~~~~~~~~g~-------~~g~~~~~~l~~~~-----------~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 127 QQRTPLVMGLWSAALMGGG-------GLGAAITPWLVQHS-----------ETWYQTLAWWALPAVVA 176 (393)
T ss_pred cccchhHHHHHHHHHHHHH-------HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHH
Confidence 3689999999998888888 88887766553221 38998876655554433
No 105
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=86.47 E-value=1.9 Score=34.47 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=41.6
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
++|+...++.+....+|. .+++.++-.+.. ..+|+..+.+.++..++..+...+++|
T Consensus 319 ~~~~~~~~~~~~~~~~g~-------~~g~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 319 GRAGAATTLYTNTGRVGW-------IIAGSVGGILAE------------RWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred chhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hccchhHHHHHHHHHHHHHHHHheecC
Confidence 356788888888888888 888877666532 258999999888877776666555544
No 106
>TIGR00893 2A0114 d-galactonate transporter.
Probab=86.14 E-value=1.9 Score=34.17 Aligned_cols=53 Identities=17% Similarity=-0.019 Sum_probs=40.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~ 78 (175)
|++.||...++.+....+|. .+++.+.-.+.. ..+ |+..+.+.++..++..+.
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~-------~~~~~i~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 341 PGNIAGLTGGLINSLGNLGG-------IVGPIVIGAIAA------------TTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred ChhHHHHHHHHHHHHHHHhh-------hhhhHHhhhhcc------------CCCchhHHHHHHHHHHHHHHHH
Confidence 78899999999999999999 888877666532 245 888888777766554433
No 107
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=85.77 E-value=1.6 Score=37.09 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=41.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|.+.|+...++.+....+|. ++++.+.-.+....... .|.....++...+++.++..++..+..+++||+.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~-------~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGA-------IIGQFGFLYLAQHGDPT--KGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chhHHHHHHHHHHHHhhhHH-------HHHHHHhhhhhcccccc--ccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 88899999999998888888 77765543332210000 0000013445555655555555544556789974
No 108
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=85.69 E-value=0.93 Score=35.97 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=39.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA 74 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~ 74 (175)
|+++||...++.+....+|. .+++.+.-.+. +..+|+..+.+.++..++
T Consensus 325 ~~~~~~~~~g~~~~~~~~g~-------~~~~~~~g~l~------------~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 325 GPANSAANYGFLYTAKAVAG-------IFGGLIASHAL------------TEIGFEYTFIVTGAFALT 373 (377)
T ss_pred hhhhhhhHhHHHHHHHHHHH-------HHHHHHHHHHH------------hhhchhhHHHHHHHHHHH
Confidence 78899999999999999999 88887766552 236899998887765554
No 109
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=85.59 E-value=1.6 Score=35.57 Aligned_cols=58 Identities=12% Similarity=-0.052 Sum_probs=39.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
|++.||...++.+....+|. .+++.+.-.+.... .+|...+.......++..+..+++
T Consensus 338 p~~~~g~~~g~~~~~~~~g~-------~~g~~~~g~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 338 PTQVRGTGVGAAVAVGRLGS-------MAGPLLAGQLLALG-----------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred chhhhhhhhhHHHHhhhHHH-------HHHhhhHhhhhccC-----------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998 88888866653321 356666666655555444443333
No 110
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=85.50 E-value=1.5 Score=37.17 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=32.4
Q ss_pred HhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 22 WNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 22 ~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
.++|. ++++.++-.+.. ..+||..|++.++..++..+...++||.+
T Consensus 167 ~~~G~-------~vg~~l~G~l~~------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 167 SATGG-------LISSLLGGPLLD------------KTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHH-------HHHHHHHHHHHH------------hcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 34677 888777766632 25899999888776666665667788863
No 111
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=85.46 E-value=1.8 Score=36.71 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=35.3
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA 74 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~ 74 (175)
+|+...++.....++|. +++..++-.+.. ..+||+.|.+.++..++
T Consensus 138 ~r~~~~~~~~~~~niG~-------~ig~~l~g~l~~------------~~g~~~~f~~~~~~~~~ 183 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGS-------FISPLLAGVIAE------------NYGYHVGFNLAAVGMVI 183 (475)
T ss_pred cccceehhHHHHHHHHH-------HHHHHHHHHHHH------------hcChHHHHHHHHHHHHH
Confidence 58888889999999999 988888766632 35899999887654443
No 112
>PRK09528 lacY galactoside permease; Reviewed
Probab=85.18 E-value=1.3 Score=36.44 Aligned_cols=51 Identities=10% Similarity=-0.160 Sum_probs=33.5
Q ss_pred CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 76 (175)
|++.|+...+. .+....+|. ++++.+.-.+.+ ..|||..+.+.++..++..
T Consensus 345 ~~~~~a~~~~~~~~~~~~lg~-------~ig~~~~G~l~~------------~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 345 DVRLSATIYLVGFQFAKQLGA-------VFLSTLAGNLYD------------SIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred CccceeeeeeehHHHHHHHHH-------HHHHHHHHHHHH------------hhCchHHHHHHHHHHHHHH
Confidence 67777765443 456667777 777777655532 3589999997766655543
No 113
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=85.18 E-value=2.9 Score=35.04 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=46.0
Q ss_pred ccccc--CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHH
Q psy12745 2 TDISE--TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALL 78 (175)
Q Consensus 2 ~~is~--p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~ 78 (175)
+.++. ||+++|...++.. .-|+|. .+..+++-.+.... ....||....+-.++.++. .+.
T Consensus 127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~-------av~q~~~P~v~~~~---------g~~~w~~~~~i~~~~l~v~~v~~ 189 (417)
T COG2223 127 PNASFFFPKEKQGLALGIAG-AGNLGV-------AVAQLVAPLVAVAF---------GFLAWRNVAGIYVVALAIAAVLA 189 (417)
T ss_pred ccccccCChhhhhHHHHHhc-cccccH-------HHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 9999999999988 778888 66666665553321 0012888766665555553 444
Q ss_pred HhhcCCChHH
Q psy12745 79 VFFIPESPKF 88 (175)
Q Consensus 79 ~~~lpESP~~ 88 (175)
.+++.|.|..
T Consensus 190 ~~~~~d~p~~ 199 (417)
T COG2223 190 WLGMNDVPEH 199 (417)
T ss_pred HHHhCCChhh
Confidence 5567777754
No 114
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=84.36 E-value=2.7 Score=34.46 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=42.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
++++||...++.+....+|. .+++.++-.+.. ..+|+..+.+.++..++..+...|
T Consensus 344 ~~~~~g~~~g~~~~~~~lg~-------~~gp~i~g~l~~------------~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 344 APKHKGAAMSVLNLSAGLSA-------FLAPAIAVLFIG------------FFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred CcchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999 888877766633 368999988887776665554444
No 115
>PRK03633 putative MFS family transporter protein; Provisional
Probab=84.01 E-value=1.9 Score=35.00 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=37.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|+++++...+.....+++|. ++++.++-.+.+ ..+|+..|.+.+...++..+.
T Consensus 315 ~~~~~~~~~~~~~~~~~lG~-------~igp~~~G~l~~------------~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 315 EHHELVAMNQALLLSYTVGS-------LLGPSFTAMLMQ------------NYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCccHHHHHHHHHHHHHHHH
Confidence 55566666677677888998 888888777643 358888888877766655444
No 116
>PRK11462 putative transporter; Provisional
Probab=82.70 E-value=3 Score=35.18 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=46.1
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~ 80 (175)
+|++..+++|..+.++.+.+.++|. ++++++...+.... .+.....+|+....+.++++++.. +...
T Consensus 135 ~~lt~d~~eRt~l~s~r~~~~~iG~-------~~~~~~~~plv~~~-----g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 135 GVITNDPTQRISLQSWRFVLATAGG-------MLSTVLMMPLVNLI-----GGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----CCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5778778899999999999999988 77766654443221 010122478887777666655544 3333
Q ss_pred hcCCC
Q psy12745 81 FIPES 85 (175)
Q Consensus 81 ~lpES 85 (175)
..+|.
T Consensus 203 ~~kE~ 207 (460)
T PRK11462 203 TTKER 207 (460)
T ss_pred cceec
Confidence 35554
No 117
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=81.84 E-value=2.4 Score=34.58 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=33.1
Q ss_pred hHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh-cCCCh
Q psy12745 14 IIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF-IPESP 86 (175)
Q Consensus 14 ~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-lpESP 86 (175)
..+......++|. .+++.++..+. +.+||.+|.+.++.+++..+..++ .||+|
T Consensus 134 ~~g~~~~~~~~g~-------~~g~~~~g~l~-------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 134 EYGKARMFGCVGW-------ALCASIAGILF-------------SIDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred ccchhhhhcccHH-------HHHHHHHhhhh-------------ccCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3344455556666 77777765541 258999999887777765444333 56655
No 118
>PRK10489 enterobactin exporter EntS; Provisional
Probab=81.47 E-value=2.3 Score=34.98 Aligned_cols=61 Identities=16% Similarity=0.017 Sum_probs=41.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~lpES 85 (175)
|++.||...++......+|. .+++.+.-.+.. ..+++..+...+...++ ..+.....||.
T Consensus 342 p~~~~g~~~g~~~~~~~~g~-------~~g~~l~G~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 342 PDEMLGRINGLWTAQNVTGD-------AIGAALLGGLGA------------MMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred CHHHHHHHHHHHHHHHhhhH-------hHHHHHHHHHHH------------HhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 78889999999998888888 888877666632 24777777655554444 34444455654
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
.
T Consensus 403 ~ 403 (417)
T PRK10489 403 R 403 (417)
T ss_pred c
Confidence 3
No 119
>PRK09669 putative symporter YagG; Provisional
Probab=80.68 E-value=3.3 Score=34.51 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=44.1
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-Hh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~ 80 (175)
+|++.++++|+.+.++...+.++|. ++++++...+...... + ....+|+..+.+.++.+++..+. .+
T Consensus 135 ~~~t~~~~eR~~l~~~r~~~~~~G~-------~i~~~~~~pl~~~~~~----~-~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 135 GAITNDPRERHSLQSWRFALSFIGG-------LIVSVIALPLVDILGK----G-DEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCC----C-chhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 4677666789999999998888888 7776654433221100 0 12358998888777666554433 33
Q ss_pred hcCC
Q psy12745 81 FIPE 84 (175)
Q Consensus 81 ~lpE 84 (175)
..+|
T Consensus 203 ~~~e 206 (444)
T PRK09669 203 MTKE 206 (444)
T ss_pred CeEE
Confidence 3444
No 120
>PRK09528 lacY galactoside permease; Reviewed
Probab=79.85 E-value=2.7 Score=34.59 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=34.5
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh-cCCC
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF-IPES 85 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-lpES 85 (175)
++|...+......++|. .+++.++..+. +.+||.+|++.++.+++..+..++ .||.
T Consensus 138 ~~g~~~g~~~~~~~~g~-------~i~~~~~g~l~-------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 138 RSGFEYGRARMWGSLGW-------ALCAFIAGILF-------------NINPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccccchhhHHhhhHHH-------HHHHHHHHHHH-------------hcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 45555555556666666 66766655552 248999999888776665544434 3443
No 121
>PRK10133 L-fucose transporter; Provisional
Probab=79.20 E-value=4.6 Score=33.85 Aligned_cols=30 Identities=3% Similarity=-0.078 Sum_probs=23.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|+++|+...+..+..+.+|. .++.+++..+
T Consensus 147 ~~~~~~~~~s~~~~~~~~G~-------~~g~~~g~~l 176 (438)
T PRK10133 147 PESSGHFRLNLAQTFNSFGA-------IIAVVFGQSL 176 (438)
T ss_pred ChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 55566667888899999999 8888886654
No 122
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=77.49 E-value=9.8 Score=32.48 Aligned_cols=73 Identities=7% Similarity=-0.263 Sum_probs=38.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh-----cc-ccCCcccccccccchHHHHHHhhHHHHHHH-HHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII-----PI-KWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLV 79 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~-----~~-~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~ 79 (175)
|+++||+..++.....++|. .++..+.-.+. .. .+........+..+||...++-.++.++.. +..
T Consensus 157 p~~~rG~A~Gi~~g~G~~G~-------~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~ 229 (462)
T PRK15034 157 PKAKQGSALGINGGLGNLGV-------SVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAW 229 (462)
T ss_pred CHhHhHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999876666776 55444433221 11 000000000123568887776655555543 334
Q ss_pred hhcCCCh
Q psy12745 80 FFIPESP 86 (175)
Q Consensus 80 ~~lpESP 86 (175)
+++++-|
T Consensus 230 ~~~~~~~ 236 (462)
T PRK15034 230 SGMNDIA 236 (462)
T ss_pred HhCCCcc
Confidence 4455544
No 123
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=77.46 E-value=6.1 Score=33.77 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=47.8
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
+|+...+++|..+.++.+.+.++|. ++..++...+.....+. ....+|+....+-++.+.+..+..++
T Consensus 138 ~~iT~d~~ER~~l~s~R~~~~~~g~-------~l~~~~~~plv~~~g~~-----~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 138 PEITQDPQERASLTSWRMVFASLGG-------LLVAVLFPPLVKLFGGG-----DKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCC-----cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777799999999999999998 76666554443332111 11468999888777776665544333
Q ss_pred -cCCC
Q psy12745 82 -IPES 85 (175)
Q Consensus 82 -lpES 85 (175)
..|-
T Consensus 206 ~v~ER 210 (467)
T COG2211 206 NVKER 210 (467)
T ss_pred Hhhcc
Confidence 4443
No 124
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=77.32 E-value=7.6 Score=32.60 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=34.9
Q ss_pred CCCCchhhHHHhHHHHhh-cCCccchhHHHHH-HHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNR-SHAFSHTPFVKGL-VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|++.||...++.+...++ |. .+++ ++++..-+........+ ....+|+..|.+..+..++..+.
T Consensus 379 p~~~~g~a~gi~~~~g~l~g~-------~~~~~~~G~i~~~~~~g~~~~~-~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 379 PKKAIGVANGIKGTFAYLFGD-------SFAKVGLGMIADPTKNGTPIFG-YTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred chhhHHHHHHHHHHHHHHHhH-------HHHhhhHHHHhccccccccccc-ccccChHHHHHHHHHHHHHHHHH
Confidence 888999999998877665 64 4444 34444411000000000 01357999888775555554333
No 125
>KOG0569|consensus
Probab=75.24 E-value=13 Score=31.94 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=35.1
Q ss_pred ccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhh
Q psy12745 3 DISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFF 81 (175)
Q Consensus 3 ~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~ 81 (175)
|.. |++.|....++..+...++. ++....-..+.. ..|= ..|++..+|+.+ .++++++
T Consensus 395 ELf-~~~~R~aa~s~~~~~~w~~~-------fiv~~~fp~l~~------------~~g~-~~filF~i~~~~~~i~~~~~ 453 (485)
T KOG0569|consen 395 ELF-PQSARSAAQSVATAVNWLSN-------FIVGFAFPPLQN------------VIGP-YVFILFVIPLAIFLIYLYRY 453 (485)
T ss_pred HhC-CccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------Hhcc-hhhHHHHHHHHHHHHHHHHh
Confidence 444 67788888888766655544 432222222211 1222 555555566555 4566788
Q ss_pred cCCC
Q psy12745 82 IPES 85 (175)
Q Consensus 82 lpES 85 (175)
+|||
T Consensus 454 lPET 457 (485)
T KOG0569|consen 454 LPET 457 (485)
T ss_pred Cccc
Confidence 9998
No 126
>PRK10429 melibiose:sodium symporter; Provisional
Probab=75.07 E-value=6.5 Score=33.16 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=42.0
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~ 80 (175)
+|++..++.|.++.++...+.++|. ++.+.+...+.... .+.....+|++...+.++..++.. +..+
T Consensus 132 ~~lt~~~~eR~~l~~~~~~~~~ig~-------~~~~~~~~~~~~~~-----g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 132 PTLTLDKREREQLVPYPRFFASLAG-------FVTAGFTLPFVNYV-----GGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----CCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 5777667799999998888878776 55544433322111 000112478888777766555533 3344
Q ss_pred hcCCC
Q psy12745 81 FIPES 85 (175)
Q Consensus 81 ~lpES 85 (175)
..+|-
T Consensus 200 ~~~e~ 204 (473)
T PRK10429 200 NVHEV 204 (473)
T ss_pred Cceec
Confidence 46664
No 127
>PRK11663 regulatory protein UhpC; Provisional
Probab=73.69 E-value=3.8 Score=34.05 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
|++.||...++.+....+|. .+++.+.-.+. +..+|+..|.+.++.+++..+
T Consensus 367 ~~~~~g~~~g~~~~~~~~g~-------~~~p~~~g~l~------------~~~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 367 HKEAAGAATGFVGLFAYLGA-------ALSGYPLAKVL------------EIWHWTGFFVVISIAAGISAL 418 (434)
T ss_pred cHhhHHhHHHHHHHHHHHHH-------HHhcccHHHHH------------HhcccHHHHHHHHHHHHHHHH
Confidence 67799999999999999988 77765554442 236899998888777666543
No 128
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=73.64 E-value=8.2 Score=32.36 Aligned_cols=34 Identities=6% Similarity=0.045 Sum_probs=27.5
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
+|++ |+++|++..++.-++..+|. ++++++...+
T Consensus 115 ~D~~-~e~~R~~~v~ivw~Mli~G~-------iv~ai~~g~l 148 (403)
T PF03209_consen 115 ADLA-PEERRPRVVAIVWVMLIVGI-------IVSAIVFGRL 148 (403)
T ss_pred HhcC-CHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4556 56799999999999999999 8888776555
No 129
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=73.51 E-value=3.3 Score=34.43 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=36.9
Q ss_pred CCCCchhhHHHhHHHHhhc-CCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRS-HAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~lpE 84 (175)
|++.||...++.+....+| . ++++.+.-.+. +..+|...+.+.....++ .++....+||
T Consensus 375 ~~~~~g~~~g~~~~~~~~gg~-------~~gp~l~G~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 375 PKKAAGTAAGFTGLFGYLGGS-------VAASAIVGYTV------------DFFGWDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred ChhheeeehhhhchHHHhhhh-------hhcchhHHHHH------------HhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7789999999887665554 4 45554443331 235788887766554444 3444556666
Q ss_pred C
Q psy12745 85 S 85 (175)
Q Consensus 85 S 85 (175)
-
T Consensus 436 ~ 436 (438)
T TIGR00712 436 E 436 (438)
T ss_pred c
Confidence 4
No 130
>PRK09952 shikimate transporter; Provisional
Probab=73.46 E-value=11 Score=31.51 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=37.8
Q ss_pred CCCCchhhHHHh-HHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWR-RVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
|++.|+...++. .++..+|. .+++.+...+.... ..+|+.++....+.+++..+....++|.
T Consensus 373 p~~~r~tg~g~~~~~~~~lgg-------~~~p~i~g~l~~~~----------~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 373 GASYRYSGAGVGYQVASVVGG-------GFTPFIAAALVTYF----------GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred CcchhHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 777887666663 44444666 66665555543211 1368888887777777665555556663
No 131
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=73.19 E-value=6.9 Score=33.19 Aligned_cols=50 Identities=10% Similarity=-0.099 Sum_probs=36.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG 75 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 75 (175)
|++.||...++......+|. .+++.++.... ...+|...+...++..++.
T Consensus 411 P~~~~g~~~g~~~l~~~~g~-------~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 460 (475)
T TIGR00924 411 PQRLMGQMLGMWFLAQAMGS-------LLGGYLATFGA------------VPQGVTGVFGKIGLVTLLV 460 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh------------cccchhhHHHHHHHHHHHH
Confidence 89999999999999999999 88877766542 1246766666555544443
No 132
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=72.71 E-value=8.4 Score=33.16 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=33.3
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHH
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFP 71 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 71 (175)
+|....++.....++|. .+++.+.-.+.. ..+||..|.++++.
T Consensus 135 ~R~sgf~i~Y~~~nlG~-------~iap~l~g~L~~------------~~Gw~~~F~iaaig 177 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGS-------IIAPIACGYAQE------------EYSWAMGFGLAAVG 177 (493)
T ss_pred cccceehHHHHHHHHHH-------HHHHHHHHHHHh------------hhChHHHHHHHHHH
Confidence 68878888888888998 888888766632 36999999887653
No 133
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=72.23 E-value=2.9 Score=32.97 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=34.3
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHH-HHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHH
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKG-LVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV 79 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~-~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~ 79 (175)
|+|+.+......++++|..++..|+++. ...- ....+|++.+.+.++...+.++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~---------------~~~~~W~~I~si~~lL~~IpLIly 58 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVI---------------ALTNNWQWILSIFILLIFIPLILY 58 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999993333333222 1111 122579999887776655544443
No 134
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=72.18 E-value=17 Score=30.82 Aligned_cols=67 Identities=6% Similarity=0.017 Sum_probs=41.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
|++.+|..-++.+...++|. +++..++..+..... .... ..+..|.+. .++.++.++.......+|+
T Consensus 381 p~~~egt~~al~~s~~~lg~-------~v~~~~gg~l~~~~g-~~~~--~~~~~~~~i-~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 381 PSGCESSVFALLASILHLGS-------SVSGFLGVLLMETIG-ITCD--NSNNLWLLI-LGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CCCceehHHHHHHHHHHHHH-------HHHHHHHHHHHHHcC-CCcc--cccchHHHH-HHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999 888887776655431 1111 112344433 3344444544444457886
No 135
>PRK03893 putative sialic acid transporter; Provisional
Probab=71.93 E-value=5 Score=33.66 Aligned_cols=45 Identities=7% Similarity=-0.079 Sum_probs=34.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTF 70 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i 70 (175)
|+++||...++......+|. .++++++-.+. +..+|+..+.+...
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~-------~lgp~l~g~l~------------~~~g~~~~~~~~~~ 440 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGG-------ALAPILGALIA------------QRLDLGTALASLSF 440 (496)
T ss_pred CHHHhhcccchhhhhhhHHH-------HHHHHHHHHHh------------ccCChHHHHHHHHH
Confidence 77899999999888888888 88888776663 33688877655443
No 136
>PRK11010 ampG muropeptide transporter; Validated
Probab=71.14 E-value=7.7 Score=33.02 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=40.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
|++.++...++.+...++|. ++++.++-.+. +..||+..|.+..+.+++..+...+++++
T Consensus 346 ~~~~~~t~~gl~~s~~~lg~-------~~~~~~~G~l~------------~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 346 NKSFSATQFALLSALSAVGR-------VYVGPVAGWFV------------EAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred CCCCcHHHHHHHHHHHHHHH-------HHHHHHHHHHH------------HHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66678888888887778887 65544443332 23589999998888777765555454443
No 137
>PRK03545 putative arabinose transporter; Provisional
Probab=70.42 E-value=13 Score=30.15 Aligned_cols=51 Identities=14% Similarity=-0.005 Sum_probs=38.3
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
++.||...++.+....+|. .+|++++-.+. +..+||..+.+.++..++..+
T Consensus 324 ~~~~~~~~g~~~~~~~~g~-------~~G~~~~G~~~------------~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 324 PDATDVAMALFSGIFNIGI-------GAGALLGNQVS------------LHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred CCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHH------------hccChhHHHHHHHHHHHHHHH
Confidence 4588998888888888888 88888766663 346999999888776665433
No 138
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=70.27 E-value=13 Score=30.96 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=39.9
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
++-+..++.+....++|. .+++.++-.+... ..+||..+.+=+.++++.++.
T Consensus 130 k~~~~mtglYs~sl~~~a-------aLaa~lavpla~~-----------~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 130 KRVGLMTGLYSTSLGAGA-------ALAAALAVPLAQH-----------SGGWRGALGFWALLALLALLI 181 (395)
T ss_pred cchhhHHhHHHHHHHHHH-------HHHhhhhhHHHHh-----------hccHHHHHHHHHHHHHHHHHH
Confidence 477889999999988888 7777776666332 147999988888888877666
No 139
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=69.96 E-value=11 Score=30.83 Aligned_cols=62 Identities=6% Similarity=-0.096 Sum_probs=41.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|++.||...++.+....+|. .+++.+.-.+.... -+|...+.+..+..++. .....+.||.
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~-------~~gp~~~G~l~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIA-------GLAPWFSGVLRSIS-----------GNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----------CCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55678888888877777777 77776655553221 15888888877666654 3445567887
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 385 ~ 385 (393)
T PRK09705 385 F 385 (393)
T ss_pred c
Confidence 5
No 140
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=68.47 E-value=13 Score=29.06 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
|. +||...++.-...+++. .+-+.+...+. .+..-+.++++...|.++.++..+++
T Consensus 126 P~-~RG~vvgilk~~~GLSa-------ai~t~i~~~~f------------~~~~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 126 PR-SRGTVVGILKGFFGLSA-------AIFTQIYSAFF------------GDDPSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred cc-ccCceehhhhHHHHhHH-------HHHHHHHHHHc------------CCChHHHHHHHHHHHHHHHHHHhhhe
Confidence 54 79999999999988888 65555555542 22355666677766766655444444
No 141
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=67.78 E-value=12 Score=30.44 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=39.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
|++.+|...++.+...++|. .+++.++-.+.. ..+|+..|.+.++..++..+
T Consensus 334 ~~~~~g~~~~~~~~~~~lg~-------~~g~~~~G~l~~------------~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 334 DGDQAGTDVTAVQSTRDLGE-------LIASSIAGYLTD------------RFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred cccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HHccHHHHHHHHHHHHHHHH
Confidence 44788999999999999999 999888776633 25888888888776655443
No 142
>KOG3764|consensus
Probab=67.52 E-value=3.5 Score=34.70 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=46.0
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
+.|+..++..-.+..+|. ++|+.++-.++.. -|.+.+|++.++..++-..+.+++
T Consensus 192 ~er~~vmGialgfislG~-------lvgPpfGGilYe~------------~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 192 NERGSVMGIALGFISLGV-------LVGPPFGGILYEF------------AGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hhhhHHHHHHHHHHhccc-------eecCCcccchHhh------------cCCcCcHHHHHHHHHHHHHHHHhe
Confidence 457999999999999999 9999998888654 489999999999888876666554
No 143
>PRK03633 putative MFS family transporter protein; Provisional
Probab=67.42 E-value=12 Score=30.27 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|+++|++..+..+..+++|. .++..++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~g~-------~~g~~~~~~l 153 (381)
T PRK03633 124 TSRNRGRLLAAYMMVYYLGT-------VLGQLLVSKV 153 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcc
Confidence 56789999999999999999 8888887765
No 144
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=66.32 E-value=14 Score=30.08 Aligned_cols=30 Identities=3% Similarity=-0.140 Sum_probs=25.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
++++||...+..+....+|. .+++.++-.+
T Consensus 338 ~~~~~g~~~~~~~~~~~~~~-------~~g~~~~~~l 367 (406)
T PRK15402 338 SDVSKGTVSAAMGMLSMLIF-------TVGIELSKHA 367 (406)
T ss_pred ccccccHHHHHHHHHHHHHH-------HHHHHHHHhc
Confidence 44789999999999998888 8888777766
No 145
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.80 E-value=12 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCC
Q psy12745 87 KFLMTHGRSDDALDVFQSMYARNTGK 112 (175)
Q Consensus 87 ~~L~~~g~~~~a~~~l~~l~~~~~~~ 112 (175)
+.+...|+.++|++.+++....++++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35578899999999999998776654
No 146
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=64.70 E-value=1.6 Score=36.15 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAGALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~~~~lpES 85 (175)
|.+.|+...++......+|. ++++.+...+. +..+ |.......++..+..++..+++|||
T Consensus 379 Pt~~R~~~~~~~~~~~~i~~-------~i~~~~~~~~~------------~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 379 PTKVRSTGIGLSYAVGRIGG-------FIIPFLFPYLF------------NNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccc-------ccccccccccc------------ccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 88899888888766655666 54443332221 1122 4444444444444455667789998
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
-
T Consensus 440 ~ 440 (451)
T PF00083_consen 440 K 440 (451)
T ss_pred C
Confidence 4
No 147
>KOG2504|consensus
Probab=64.47 E-value=6.9 Score=33.79 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=41.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
-+++|+...++...+.++|. ++-+.+.-.+. +..|||..+++.+.+.+-. ......-|.+
T Consensus 164 F~kkR~lA~Gia~~GsG~G~-------~~~~~l~~~l~------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 164 FEKKRALATGIAVSGTGVGT-------VVFPPLLKYLL------------SKYGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred hHHHHHHHHhhhhccCCcce-------eeHHHHHHHHH------------HHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45799999999999999998 65555544442 3469999888776665543 3334445544
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
|
T Consensus 225 ~ 225 (509)
T KOG2504|consen 225 P 225 (509)
T ss_pred c
Confidence 3
No 148
>KOG2816|consensus
Probab=62.75 E-value=20 Score=30.69 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=45.5
Q ss_pred cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHh
Q psy12745 2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVF 80 (175)
Q Consensus 2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~ 80 (175)
+|++. .+.|....++....+..|. .+++.++...... .+.-.++.+.++..+.. ...+.
T Consensus 138 adis~-~~~R~~~~gll~~~~~~~~-------~~~p~~~~~~~~~------------~~~a~~f~ia~~~~~~~~~y~~~ 197 (463)
T KOG2816|consen 138 ADISS-EEERSSSIGLLSGTFGAGL-------VIGPALGGYLVKF------------LGIALVFLIAAASGILSLLYMLL 197 (463)
T ss_pred eeccc-hhHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHh------------cCchHHHHHHHHHHHHHHHHHhh
Confidence 56664 5589888999888888888 7777777766332 35556777776666654 45567
Q ss_pred hcCCCh
Q psy12745 81 FIPESP 86 (175)
Q Consensus 81 ~lpESP 86 (175)
++|||-
T Consensus 198 ~l~Esl 203 (463)
T KOG2816|consen 198 FLPESL 203 (463)
T ss_pred cccccc
Confidence 789983
No 149
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=60.68 E-value=51 Score=22.74 Aligned_cols=22 Identities=5% Similarity=-0.348 Sum_probs=13.8
Q ss_pred ccCCCCchhhHHHhHHHHhhcC
Q psy12745 5 SETKRDTKKIIYWRRVDWNRSH 26 (175)
Q Consensus 5 s~p~~~Rg~~~~~~~~~~~~G~ 26 (175)
.||.=.||....=..+...+|.
T Consensus 13 ~ePvV~rGlT~~El~~~a~~~~ 34 (121)
T PF11990_consen 13 REPVVFRGLTADELGLAAGVGF 34 (121)
T ss_pred CCCCeecCCCHHHHHHHHHHHH
Confidence 4577778877665555555555
No 150
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=58.65 E-value=11 Score=31.66 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=39.7
Q ss_pred cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCC
Q psy12745 6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPE 84 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpE 84 (175)
+|.+ ||.+.++......+|. +++..++..+.. ..++|..|.+..+...+.. ...+..+|
T Consensus 118 ~p~~-~g~lqS~~~~~~~~G~-------lv~~~l~G~l~~------------~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 118 EPES-RGDLQSFVWGVRSVGS-------LVGSLLSGPLLD------------SFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred CCch-hHHHHHHHHHHHHHHH-------HHHHHhhhhhhh------------cCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 3665 9999999888888998 888877765533 2467777776665545443 33444454
No 151
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=58.33 E-value=17 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=22.9
Q ss_pred cchHHHHHHhhHH-----HHH-HHHHHhhcCCChHHHHhcCChHHHHHHHHHH
Q psy12745 59 CSWRIFLIVSTFP-----SLA-GALLVFFIPESPKFLMTHGRSDDALDVFQSM 105 (175)
Q Consensus 59 ~~Wr~~~~~~~i~-----~~~-~~~~~~~lpESP~~L~~~g~~~~a~~~l~~l 105 (175)
+--|+.+++..+. .++ .+++.+.+|+-|.-....+..+.+.+.++++
T Consensus 34 ~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~ 86 (118)
T PRK10697 34 KLVRIIVVLSIFFGLFVFTLVAYIILSFALDPMPDNMAFGEQQPSSSELLDEV 86 (118)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhccCCcccccccccCCCHHHHHHHH
Confidence 4457766554332 222 3455666887774322222233344455544
No 152
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=58.19 E-value=62 Score=26.44 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=24.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIP 45 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~ 45 (175)
+++.+|...++.+....+|. .++..+.-.+..
T Consensus 348 ~~~~~G~~~~~~~~~~~~g~-------~lg~~i~g~ll~ 379 (437)
T TIGR00792 348 GVRAEGLVYSVRTFVRKLGQ-------ALAGFLVGLILG 379 (437)
T ss_pred CccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 46678999999999999988 777766555543
No 153
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=58.02 E-value=28 Score=28.96 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=40.2
Q ss_pred cCCCCchhhHHHhHH-HHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745 6 ETKRDTKKIIYWRRV-DWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~-~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 76 (175)
.|++.|+...+++.. ..++|. .+|+.++-.+.+.. +......|...+.+.+..+++..
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~-------~iG~~igG~l~~~~------g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGG-------AIGSLIGGWLYDAF------GARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHh------cchhhhhHHHHHHHHHHHHHHHH
Confidence 399999999998765 567888 99998888876543 11122457777777766655543
No 154
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=57.35 E-value=18 Score=31.34 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=36.0
Q ss_pred cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745 6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA 74 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~ 74 (175)
.|++.||+..++++.....|. .+|+++.-.+.. ..+-+..+.++++..++
T Consensus 336 ~P~~~~GRv~si~~~~~~g~~-------~lGsll~G~la~------------~~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 336 VPDWVRGRVFSIYQMVFFGGM-------PLGSLLWGFLAD------------HFGVRTALLIAGAALLL 385 (524)
T ss_pred CCHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCHHHHHHHHHHHHHH
Confidence 389999999999988887777 777776655532 35777777766654433
No 155
>PRK10504 putative transporter; Provisional
Probab=57.05 E-value=21 Score=29.78 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=24.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII 44 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~ 44 (175)
|++.||...++.+....+|. .++..++..+.
T Consensus 383 ~~~~~g~~~~~~~~~~~~g~-------~ig~~i~g~ll 413 (471)
T PRK10504 383 PDNLASSGNSLLSMIMQLSM-------SIGVTIAGLLL 413 (471)
T ss_pred CHHhccchHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 77899999999999888888 77766655443
No 156
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.88 E-value=41 Score=22.89 Aligned_cols=23 Identities=9% Similarity=-0.376 Sum_probs=15.2
Q ss_pred cccCCCCchhhHHHhHHHHhhcC
Q psy12745 4 ISETKRDTKKIIYWRRVDWNRSH 26 (175)
Q Consensus 4 is~p~~~Rg~~~~~~~~~~~~G~ 26 (175)
+.||.=.||....=..+...+|.
T Consensus 9 N~ePvV~rGlT~~El~~~~~~~~ 31 (111)
T TIGR03750 9 NREPVVFRGLTADELGVAAGVGL 31 (111)
T ss_pred cCCCceecccCHHHHHHHHHHHH
Confidence 35677788887776655555555
No 157
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=55.81 E-value=19 Score=30.42 Aligned_cols=57 Identities=19% Similarity=0.065 Sum_probs=32.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIP 83 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lp 83 (175)
+++.||...++......+|. ++++.+ +.. .+..+|+..|.+.++..++..+..++++
T Consensus 377 ~~~~~g~~~g~~~~~g~lg~-------~i~~~l-~~~------------~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 377 SRRSLGVISGLTGAGGNVGA-------VLTQLL-FFT------------GSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ChhhchhhhhhhhccccHHH-------HHHHHH-HHh------------cCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 34578887777655544444 444332 111 1124799988888776666555554443
No 158
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=55.44 E-value=12 Score=30.86 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIP 45 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~ 45 (175)
|+++||...++.+....+|. .+++.++-.+..
T Consensus 327 p~~~~g~~~g~~~~~~~~g~-------~ig~~l~G~l~~ 358 (400)
T PRK11646 327 DARARGSYMGFSRLGLALGG-------AIGYIGGGWLFD 358 (400)
T ss_pred CcccchhhhhHHHHHHHHHH-------HhcccchHHHHH
Confidence 88999999999999998888 888777666643
No 159
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=55.23 E-value=59 Score=27.85 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=38.6
Q ss_pred chhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHH-HHHHHHHhhcCCChH
Q psy12745 11 TKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPS-LAGALLVFFIPESPK 87 (175)
Q Consensus 11 Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~-~~~~~~~~~lpESP~ 87 (175)
|++..+.-...-++|. ++..++...+....... ..+.++-|+.+.+.++.- ++.....+++||.|+
T Consensus 186 ~~~vS~~G~a~Gy~G~-------~v~l~i~l~~~~~~~~~----~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 186 RGRVSGLGWALGYIGG-------LVALLISLLLVISPGST----ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hchhHHHHHHHHHHHH-------HHHHHHHHHHHHcCCCc----cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3777777655556666 66666666553222111 012345688777776654 445566777888874
No 160
>PF15050 SCIMP: SCIMP protein
Probab=53.18 E-value=19 Score=24.78 Aligned_cols=19 Identities=5% Similarity=0.225 Sum_probs=14.4
Q ss_pred hHHHHhcCChHHHHHHHHH
Q psy12745 86 PKFLMTHGRSDDALDVFQS 104 (175)
Q Consensus 86 P~~L~~~g~~~~a~~~l~~ 104 (175)
.||++++|+.-++.++++.
T Consensus 31 cR~~lRqGkkweiakp~k~ 49 (133)
T PF15050_consen 31 CRWQLRQGKKWEIAKPLKQ 49 (133)
T ss_pred HHHHHHccccceeccchhh
Confidence 5899999987777666654
No 161
>PRK09848 glucuronide transporter; Provisional
Probab=53.06 E-value=99 Score=25.62 Aligned_cols=30 Identities=17% Similarity=-0.014 Sum_probs=22.7
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
+++++|...+..++...+|. .++..+...+
T Consensus 356 g~r~~G~~~~~~~~~~klg~-------aig~~i~g~~ 385 (448)
T PRK09848 356 GVRIEGLTYSLFSFTRKCGQ-------AIGGSIPAFI 385 (448)
T ss_pred CccchhHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 45567999999999999998 7776665444
No 162
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=51.89 E-value=34 Score=28.66 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=43.2
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
++.++...++....+++|+ .+|+.++-.... ..++....+++++..++....
T Consensus 330 p~~~~~a~sl~~aa~nlgi-------a~GA~lGG~v~~------------~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 330 PDAADLAGSLNVAAFNLGI-------ALGAALGGLVLD------------ALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred CCchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hhchHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999 999999888743 379999999998877765544
No 163
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=51.54 E-value=28 Score=29.73 Aligned_cols=28 Identities=11% Similarity=-0.148 Sum_probs=22.7
Q ss_pred cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHH
Q psy12745 6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIA 40 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~ 40 (175)
+|++.||+..+...+...+|. .++..+.
T Consensus 411 aP~~~rg~~~g~~~l~~a~g~-------~~~g~~~ 438 (500)
T PRK09584 411 VPQRLMGFIMGSWFLTTAGAA-------LIAGYVA 438 (500)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 399999999999888888888 6665554
No 164
>KOG2325|consensus
Probab=51.17 E-value=28 Score=30.02 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccc-cCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIK-WTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
.+.|.++.+....+..+|. ++|+.++..+.+.. +...+......+.+-.+-++..+..++. +++.+++.|.
T Consensus 160 ~~dR~rA~a~~~~~~vlg~-------ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 160 VEDRPRAFAATSGGFVLGI-------ILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred ccchHHHHHHhhhHHHHHH-------HHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 4478888888888888888 88888888887755 2222222122233445666666655554 3445566776
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
+
T Consensus 233 ~ 233 (488)
T KOG2325|consen 233 Y 233 (488)
T ss_pred c
Confidence 5
No 165
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=50.74 E-value=41 Score=27.78 Aligned_cols=15 Identities=0% Similarity=-0.336 Sum_probs=12.2
Q ss_pred CCCCchhhHHHhHHH
Q psy12745 7 TKRDTKKIIYWRRVD 21 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~ 21 (175)
|++.|+...++....
T Consensus 366 p~~~r~t~~g~~~~~ 380 (432)
T PRK10406 366 PAQVRALGVGLSYAV 380 (432)
T ss_pred CCCccchhhhHHHHH
Confidence 888999999987654
No 166
>KOG0252|consensus
Probab=50.66 E-value=14 Score=31.82 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=43.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|.+.|+..-++....--.|. +++...-....... . ....+-|..+++.+.......+..+++|||-
T Consensus 436 ParvR~t~hGIsAA~GK~GA-------ivg~~~F~~~t~~~---y----p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 436 PARVRSTCHGISAASGKAGA-------IVGAFGFLYLTDHN---Y----PPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred hHHHhhhhhhHHHHhccchH-------HHHHHHhhHhhhcc---C----CccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 88888887777666655666 66654433332211 1 1235778888888887777777778899985
No 167
>PRK12307 putative sialic acid transporter; Provisional
Probab=50.14 E-value=29 Score=28.31 Aligned_cols=30 Identities=7% Similarity=-0.315 Sum_probs=24.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|+++||...++......+|. ++++.+.-.+
T Consensus 351 p~~~~g~~~g~~~~~~~~~~-------~~gp~~~g~l 380 (426)
T PRK12307 351 PLEVRGLGTGLIYNLAATSG-------TFNSMAATWL 380 (426)
T ss_pred cHHHHhhhhhHHHHHHhHHH-------HHHHHHHHHH
Confidence 88899999998888888888 7787776555
No 168
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.11 E-value=52 Score=19.42 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.4
Q ss_pred ccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 58 MCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
..+.+...+++.+.+++...+...+|..|
T Consensus 28 ~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 28 TYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45788888888887777766655666554
No 169
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.69 E-value=23 Score=17.22 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=17.3
Q ss_pred HhcCChHHHHHHHHHHhhccCC
Q psy12745 90 MTHGRSDDALDVFQSMYARNTG 111 (175)
Q Consensus 90 ~~~g~~~~a~~~l~~l~~~~~~ 111 (175)
.+.|+.++|.+.++++....++
T Consensus 11 ~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHccCHHHHHHHHHHHHHHCcC
Confidence 4568899999999998776543
No 170
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=49.46 E-value=38 Score=31.81 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|++.||...++.+....+|. +++.+++..+... ..+|...+++.+...++. .+....+||+
T Consensus 352 p~~~rg~~~~~~~~~~~lg~-------~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 352 PEKELGKVLAANNFLQNVGM-------LLFLALTTLFSGL-----------GLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred CccchhhhhHHHHHHHHHHH-------HHHHHHHHHHHHh-----------ccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 78899999999998888888 7776666554221 135555555554443332 2333345554
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
-
T Consensus 414 ~ 414 (1146)
T PRK08633 414 L 414 (1146)
T ss_pred H
Confidence 3
No 171
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=47.18 E-value=35 Score=20.42 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=17.8
Q ss_pred ccchHHHHHHhhHHH----HHHHHHHhhcCCCh
Q psy12745 58 MCSWRIFLIVSTFPS----LAGALLVFFIPESP 86 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~----~~~~~~~~~lpESP 86 (175)
.+-+|+.|.+..+.. ++.++....+|+.|
T Consensus 28 ~~~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 28 PTLVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 356798888776643 22344455678776
No 172
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=46.34 E-value=47 Score=27.91 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+..-|..-++.....++|. .++..++-.+..... +.. .+..+-.+..+++.+..++.+.+..++|+..
T Consensus 348 P~G~Egt~yall~s~~Nlg~-------~~s~~lg~~l~~~~~---vt~-~~f~~l~~lili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 348 PKGSEGTVYALLASFSNLGS-------SVSSTLGAFLMELFG---VTR-DDFSNLWLLILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred CCCchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcC---CCc-ccccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77788888888888888888 777777666654331 111 0112223344445555555555555677754
No 173
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=45.15 E-value=80 Score=21.10 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=21.9
Q ss_pred cccchHHHHHHhhHHHHHH-HHHHhhcCCCh
Q psy12745 57 LMCSWRIFLIVSTFPSLAG-ALLVFFIPESP 86 (175)
Q Consensus 57 ~~~~Wr~~~~~~~i~~~~~-~~~~~~lpESP 86 (175)
+.++|..+++++...++++ .+.+.+.||+.
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4578999999886666554 45566789887
No 174
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=44.78 E-value=30 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=15.6
Q ss_pred chHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 60 SWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 60 ~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
.|+. |++.++..++.++..+++||+|
T Consensus 158 ~~~~-f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 158 SNIQ-LYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred hhHH-HHHHHHHHHHHHHHHhcCCCCC
Confidence 4654 4444454555555566789987
No 175
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=44.73 E-value=42 Score=23.18 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=17.3
Q ss_pred cchHHHHHHhhHHHH-----H-HHHHHhhcCCChH
Q psy12745 59 CSWRIFLIVSTFPSL-----A-GALLVFFIPESPK 87 (175)
Q Consensus 59 ~~Wr~~~~~~~i~~~-----~-~~~~~~~lpESP~ 87 (175)
+-.|+.+++..+++. + .+++.+.+|+-|.
T Consensus 29 ~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 29 WLVRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 566887776554322 2 3445666788774
No 176
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=44.65 E-value=32 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=16.6
Q ss_pred ccchHHHHHHhhHHHHHHHHHH
Q psy12745 58 MCSWRIFLIVSTFPSLAGALLV 79 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~~~~~~~~ 79 (175)
..||+..|.+.++.+++.++..
T Consensus 365 ~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 365 AYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HhChHHHHHHHHHHHHHHHHHH
Confidence 3699999999888777655544
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.67 E-value=27 Score=16.59 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=15.1
Q ss_pred HhcCChHHHHHHHHHHhhc
Q psy12745 90 MTHGRSDDALDVFQSMYAR 108 (175)
Q Consensus 90 ~~~g~~~~a~~~l~~l~~~ 108 (175)
.+.|+.++|.+.++++.+.
T Consensus 11 ~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 11 CKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HccchHHHHHHHHHHHhHC
Confidence 4678899999999888643
No 178
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=42.81 E-value=42 Score=16.18 Aligned_cols=20 Identities=40% Similarity=0.778 Sum_probs=16.6
Q ss_pred HHhcCChHHHHHHHHHHhhc
Q psy12745 89 LMTHGRSDDALDVFQSMYAR 108 (175)
Q Consensus 89 L~~~g~~~~a~~~l~~l~~~ 108 (175)
+.+.|+.++|.+.++++...
T Consensus 10 ~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 10 LCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHCCCHHHHHHHHHHHHHc
Confidence 46789999999999998654
No 179
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=42.06 E-value=26 Score=20.90 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=16.4
Q ss_pred cchHHHHHHhhHHHHHHHHH
Q psy12745 59 CSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 59 ~~Wr~~~~~~~i~~~~~~~~ 78 (175)
.+||...+++++.+++...+
T Consensus 3 rg~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 59999999999988876544
No 180
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.04 E-value=1.1e+02 Score=23.59 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCChHHHHhcCChHHHHHHHHHHhh
Q psy12745 83 PESPKFLMTHGRSDDALDVFQSMYA 107 (175)
Q Consensus 83 pESP~~L~~~g~~~~a~~~l~~l~~ 107 (175)
-|...|-...|+.-.|..+|+.+++
T Consensus 75 a~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 75 AQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHHHHHHHhcCCCchHHHHHHhhcC
Confidence 4666687788888888899998876
No 181
>KOG0255|consensus
Probab=40.72 E-value=60 Score=27.58 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=40.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|...|+...+.......+|. ++++.+-+...... ..+.... ++....+..++...++||+.
T Consensus 436 pt~~r~~~~~~~~~~~~~~~-------i~ap~~~~~~~~~~-----------~~~~~~~-~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 436 PTVVRNTAVGAISAAARLGS-------ILAPLFPLLLRQMF-----------PLLGLIL-FGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhc-----------ccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence 77789999999888888888 88887776552211 2222222 34444444555557899987
Q ss_pred H
Q psy12745 87 K 87 (175)
Q Consensus 87 ~ 87 (175)
.
T Consensus 497 ~ 497 (521)
T KOG0255|consen 497 G 497 (521)
T ss_pred C
Confidence 4
No 182
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=40.43 E-value=59 Score=30.70 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|++.||+..+..+....+|. .+++++...+
T Consensus 364 p~~~~G~v~g~~~~~~~~~~-------~ig~~~~g~l 393 (1140)
T PRK06814 364 NPAHRARVIAANNVLNAAFM-------VAGTIILALL 393 (1140)
T ss_pred CcccceeeeHHHHHHHHHHH-------HHHHHHHHHH
Confidence 88899999999999988888 7777776555
No 183
>KOG2532|consensus
Probab=40.31 E-value=12 Score=31.92 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=34.0
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
+++-+.+.++.+...++.. ++++.+.-.+.+ + .+...||+.|++.++..++..+.
T Consensus 388 pq~a~~l~g~~~~~~~~~~-------~~~P~~vg~~~~--------~-~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 388 PQHAGFVMGIINFVGALAG-------FIAPLLVGIIVT--------D-NTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred chHHHHHHHHHHHHHHHHH-------HHHHHheeeEeC--------C-CCHHHHHHHHHHHHHHHHHhchh
Confidence 3456666666666666666 666555444321 1 13468999999998876665444
No 184
>PF13041 PPR_2: PPR repeat family
Probab=39.42 E-value=48 Score=18.25 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=18.0
Q ss_pred HHHhcCChHHHHHHHHHHhhcc
Q psy12745 88 FLMTHGRSDDALDVFQSMYARN 109 (175)
Q Consensus 88 ~L~~~g~~~~a~~~l~~l~~~~ 109 (175)
.+.++|+.++|.+.++++.+..
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcC
Confidence 3568899999999999997554
No 185
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=39.06 E-value=94 Score=26.28 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++=.+..+......-+|. +++++++..+... +..+.+.+..+......+.++..+++|-.+
T Consensus 123 ~~~~yq~vts~~raa~l~g~-------~~s~~lgQllvs~----------~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 123 DKEHYQKVTSYTRAATLVGR-------FISSLLGQLLVSF----------GGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45555667777788888888 8899998888653 235778887777665555666667788766
Q ss_pred H
Q psy12745 87 K 87 (175)
Q Consensus 87 ~ 87 (175)
+
T Consensus 186 ~ 186 (412)
T PF01770_consen 186 R 186 (412)
T ss_pred c
Confidence 5
No 186
>PRK09669 putative symporter YagG; Provisional
Probab=38.66 E-value=73 Score=26.43 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=21.2
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII 44 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~ 44 (175)
.+++.|...+.......+|. .+++.++..+.
T Consensus 356 G~r~~g~~~s~~~~~~klg~-------alg~~i~g~ll 386 (444)
T PRK09669 356 GRRLDGLVFSTNLFAIKLGL-------AIGGAVVGWIL 386 (444)
T ss_pred CcCcchHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 44455777788888888888 77766655443
No 187
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=38.05 E-value=25 Score=29.30 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=34.6
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI 82 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l 82 (175)
+.+|...++.+....+|. ++++.+.-.+.... ...+|+..|.+.++..++..+...+.
T Consensus 392 ~~~g~~~g~~~~~~~l~~-------~i~p~l~g~~~~~~---------~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 392 RFLGFIKGITGLPGFIGG-------LIASTLAGNILSQD---------SKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHhhheeeCCC---------CchHHHHHHHHHHHHHHHHHHHeeee
Confidence 377888888877777777 66554433221110 11249999888877666655444333
No 188
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=37.50 E-value=54 Score=15.92 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=16.3
Q ss_pred HHhcCChHHHHHHHHHHhhccC
Q psy12745 89 LMTHGRSDDALDVFQSMYARNT 110 (175)
Q Consensus 89 L~~~g~~~~a~~~l~~l~~~~~ 110 (175)
+...|+.++|.+.+++....++
T Consensus 11 ~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHHHCc
Confidence 4577899999999888766554
No 189
>PRK03699 putative transporter; Provisional
Probab=37.13 E-value=46 Score=27.06 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=33.1
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
+.++...+.......+|. ++++.+.-.+.. ..+|+..+++..+..++....
T Consensus 325 ~~~~~~~g~~~~~~~~g~-------~i~p~~~G~l~~------------~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 325 VASPKLVNFILTCGTIGT-------MLTFVVTSPIVA------------HFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred CCCHHHHHHHHHhhhHHH-------HHHHHHHHHHHH------------HhCchhhhhhhHHHHHHHHHH
Confidence 345666677777777787 888777555522 358888888776665554433
No 190
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=36.69 E-value=62 Score=26.24 Aligned_cols=51 Identities=10% Similarity=-0.149 Sum_probs=32.8
Q ss_pred CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 76 (175)
|++.++...+. .+....+|. .+++.++-.+. +..||+..|.+.++..++..
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~-------~~~~~l~G~l~------------~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAM-------IFLSTLAGNMY------------DSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred CcceEEEeehHHHHHHHHHHH-------HHHHHhHHHHH------------HhcccHHHHHHHHHHHHHHH
Confidence 55555554444 456777777 77776655553 23589999988777665543
No 191
>KOG2447|consensus
Probab=36.46 E-value=1.2e+02 Score=24.15 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=34.8
Q ss_pred ccccc----CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhH
Q psy12745 2 TDISE----TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTF 70 (175)
Q Consensus 2 ~~is~----p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i 70 (175)
.||+. |+++-.+..+.......+-. +++.++.|.-.-. ++.+......|+..|..+.+
T Consensus 182 ~EI~HiFr~PeKRp~~~lS~iFt~iiv~p-------ll~Llv~W~klg~----Nv~n~pss~~s~~~Fh~gi~ 243 (287)
T KOG2447|consen 182 PEISHIFRAPEKRPAKPLSDIFTGIIVSP-------LLGLLVLWLKLGA----NVSNFPSSPTSTLGFHAGIA 243 (287)
T ss_pred hhhhhhccCCCcCccchhHHHHHHHHHHH-------HHHHHHHHHHhhh----hhccCCCCCchhhhhhhHHH
Confidence 36666 66666888888887777766 6666555543221 12221223458888887754
No 192
>PF12854 PPR_1: PPR repeat
Probab=35.42 E-value=42 Score=17.15 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=14.0
Q ss_pred HHhcCChHHHHHHHHHH
Q psy12745 89 LMTHGRSDDALDVFQSM 105 (175)
Q Consensus 89 L~~~g~~~~a~~~l~~l 105 (175)
+-+.|+.++|.+.++++
T Consensus 17 ~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 17 YCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 45789999999998765
No 193
>PRK09848 glucuronide transporter; Provisional
Probab=35.04 E-value=92 Score=25.82 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=15.5
Q ss_pred ccccCCCCchhhHHHhHHHHhhc
Q psy12745 3 DISETKRDTKKIIYWRRVDWNRS 25 (175)
Q Consensus 3 ~is~p~~~Rg~~~~~~~~~~~~G 25 (175)
|++.++++|....++...+.++|
T Consensus 136 ~~~~~~~~r~~~~~~r~~~~~~~ 158 (448)
T PRK09848 136 AMTQQPQSRARLGAARGIAASLT 158 (448)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHH
Confidence 45556667888888877665554
No 194
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=33.93 E-value=45 Score=27.09 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
+++|...-++...+.++|. +++..+.-.+. .+.+|-+.|.+.++..++..+.
T Consensus 67 ~~~~~~~F~~fY~~in~G~-------~~~~~~~~~i~------------~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGS-------LFSPTLVPYIQ------------QNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHH-------HHHHHCCCHHH------------HCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhh-------Hhhcccchhhc------------cccchhhhhhHHHHHHHHHHHH
Confidence 3455666678888999999 77665544442 3479999999887765554444
No 195
>PRK10054 putative transporter; Provisional
Probab=33.02 E-value=1.3e+02 Score=24.64 Aligned_cols=60 Identities=7% Similarity=-0.031 Sum_probs=35.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|++.||...+..+ ...+|. .+|+.++-.+.+. .+-+..+.+..+...+. ++....+.|.
T Consensus 328 p~~~~~~~~~~~~-~~~~G~-------~~Gp~~~G~l~~~------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
T PRK10054 328 PPGMKASYFSAQS-LGWLGA-------AINPLVSGVILTT------------LPPWSLFVILALAIVAAWLLMLKGMRAR 387 (395)
T ss_pred CcccceehHhHHH-HHHHHH-------HHHHHHHHHHHHH------------cChhhHHHHHHHHHHHHHHHHHhccccC
Confidence 7778888876544 334677 7777776666332 36666666654544443 3334556665
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
|
T Consensus 388 ~ 388 (395)
T PRK10054 388 P 388 (395)
T ss_pred c
Confidence 5
No 196
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=32.29 E-value=1e+02 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=14.1
Q ss_pred HHHHHHHhhcCCChHHHHhc
Q psy12745 73 LAGALLVFFIPESPKFLMTH 92 (175)
Q Consensus 73 ~~~~~~~~~lpESP~~L~~~ 92 (175)
++-.++...+|+.|+|...+
T Consensus 427 ~~~~~i~~~ipd~P~~v~~~ 446 (452)
T PF04547_consen 427 FLKYLISWLIPDVPKWVRIQ 446 (452)
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 33456677789999998543
No 197
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=32.19 E-value=86 Score=18.10 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=18.8
Q ss_pred ccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 58 MCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
...|.++|+...+.+++.++.+-.++.
T Consensus 21 P~ww~~~f~~tivfa~~Y~~~yp~~~~ 47 (51)
T PF14715_consen 21 PRWWLWLFYGTIVFAVGYLVLYPGLGN 47 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 357888998888888876666544443
No 198
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=31.87 E-value=1.3e+02 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.4
Q ss_pred CCCCchhhHHHhH-HHHhhcCCccchhHHHHHHHHHHHhc
Q psy12745 7 TKRDTKKIIYWRR-VDWNRSHAFSHTPFVKGLVIAYFIIP 45 (175)
Q Consensus 7 p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~l~~~i~~~~~~ 45 (175)
|+++|+...++++ ..+.+|. ++++.++-.+.+
T Consensus 322 ~~~~~~~~q~~~~~~~~g~g~-------~~g~~~~G~l~~ 354 (382)
T TIGR00902 322 PGSEIAKLQALYNALAMGGLI-------AIFTAFAGFIYP 354 (382)
T ss_pred CHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 7778888888765 5677888 888888777743
No 199
>KOG2513|consensus
Probab=31.71 E-value=2e+02 Score=25.75 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=11.0
Q ss_pred HHHHhhcCCChHHHH
Q psy12745 76 ALLVFFIPESPKFLM 90 (175)
Q Consensus 76 ~~~~~~lpESP~~L~ 90 (175)
+++...+||+|+|..
T Consensus 587 flis~vipe~p~wva 601 (647)
T KOG2513|consen 587 FLISSVIPESPRWVA 601 (647)
T ss_pred HHHHHhcCCChHHHH
Confidence 344555799999985
No 200
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.62 E-value=73 Score=15.38 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.3
Q ss_pred HhcCChHHHHHHHHHHhhc
Q psy12745 90 MTHGRSDDALDVFQSMYAR 108 (175)
Q Consensus 90 ~~~g~~~~a~~~l~~l~~~ 108 (175)
.+.|+.++|.++++.+...
T Consensus 12 ~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 12 AKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 4678899999999988654
No 201
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.34 E-value=27 Score=24.15 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=5.3
Q ss_pred HHHHHHhhHHHHH
Q psy12745 62 RIFLIVSTFPSLA 74 (175)
Q Consensus 62 r~~~~~~~i~~~~ 74 (175)
||++++..|..++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 4444444343333
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=30.24 E-value=56 Score=18.89 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=17.8
Q ss_pred HHhcCChHHHHHHHHHHhhccCCC
Q psy12745 89 LMTHGRSDDALDVFQSMYARNTGK 112 (175)
Q Consensus 89 L~~~g~~~~a~~~l~~l~~~~~~~ 112 (175)
|+..|+.++|.+.++++...++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~ 24 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN 24 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC
Confidence 356788888888888887766553
No 203
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=30.16 E-value=1.4e+02 Score=24.39 Aligned_cols=30 Identities=10% Similarity=-0.086 Sum_probs=22.8
Q ss_pred CCCC-chhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRD-TKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~-Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|++. +|...+..+...++|. .++..+...+
T Consensus 323 ~~~~~~g~~~a~~~~~~~~~~-------~~~~~~~~~~ 353 (393)
T PRK11195 323 HVLVGAGHSIAVQNFNENLAM-------LLMLGLYSLL 353 (393)
T ss_pred cccccchhHHHHHhHHHHHHH-------HHHHHHHHHH
Confidence 4433 7999999999999888 7777776655
No 204
>KOG1278|consensus
Probab=29.70 E-value=1.1e+02 Score=27.06 Aligned_cols=32 Identities=0% Similarity=-0.196 Sum_probs=24.8
Q ss_pred CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhcc
Q psy12745 8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPI 46 (175)
Q Consensus 8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~ 46 (175)
+..||.+++..-+.+.++. ++++-++..+...
T Consensus 358 Ps~RGsLmT~~~~l~v~~G-------~~agY~s~rlyk~ 389 (628)
T KOG1278|consen 358 PSSRGSLMTAMVLLFVFMG-------FVAGYVSARLYKT 389 (628)
T ss_pred ccccccHHHHHHHHHHHHH-------HhhhhhhhhhHhh
Confidence 4489999888888888877 7777777777654
No 205
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=29.40 E-value=68 Score=19.21 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=13.5
Q ss_pred cccchHHHHHHhhHHHHH
Q psy12745 57 LMCSWRIFLIVSTFPSLA 74 (175)
Q Consensus 57 ~~~~Wr~~~~~~~i~~~~ 74 (175)
.+..||+.|..+.+.+.+
T Consensus 42 ~~~~W~~~fl~Gl~~g~~ 59 (62)
T PF14241_consen 42 PDRDWRLAFLAGLILGGF 59 (62)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 347899999999775543
No 206
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=29.12 E-value=1.5e+02 Score=25.49 Aligned_cols=61 Identities=5% Similarity=-0.080 Sum_probs=41.4
Q ss_pred CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCCh
Q psy12745 9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPESP 86 (175)
Q Consensus 9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpESP 86 (175)
++.|..+++.+.+..+.. ++.++....+.+.. | .+=...+.++++.+++.. +..+.+|..|
T Consensus 414 ~~~G~~mgilN~~I~lpQ-------ii~sl~~g~~~~~~------g----~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 414 AGQGLSMGVLNLAIVIPQ-------IIVSLGSGPWDQLF------G----GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCcchhhHHHHHHHHHH-------HHHHHHHHHHHHHc------C----CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 456999999999999999 88886544433321 1 123457778888877754 4455677765
No 207
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=28.69 E-value=1e+02 Score=26.38 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.3
Q ss_pred cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
.|++.+|..+++......+|. .++..++-..
T Consensus 408 aP~~~~g~~~g~~~l~~~ig~-------~lg~~l~~~~ 438 (489)
T PRK10207 408 VPQHLMGFILGMWFLTQAAAF-------LLGGYVATFT 438 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 499999999999999999999 8887776544
No 208
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.30 E-value=61 Score=15.30 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=11.4
Q ss_pred HHhcCChHHHHHHHH
Q psy12745 89 LMTHGRSDDALDVFQ 103 (175)
Q Consensus 89 L~~~g~~~~a~~~l~ 103 (175)
+...|+.++|+..++
T Consensus 11 ~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 11 LLAQGDPDEAERLLR 25 (26)
T ss_pred HHHcCCHHHHHHHHh
Confidence 457799999987664
No 209
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=25.47 E-value=1.6e+02 Score=23.97 Aligned_cols=30 Identities=13% Similarity=-0.143 Sum_probs=23.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|++.||...++.+..-.+|. ++++.+.-.+
T Consensus 310 p~~~rgt~~G~~~~~g~~~~-------~~~~~~~~~~ 339 (368)
T TIGR00903 310 DKELHGKAAGAIGFTSRAIS-------VALALAAMLF 339 (368)
T ss_pred chhhcCcccchhhHHHHHHH-------HHHHHHHHHH
Confidence 88899999999988888877 7666555443
No 210
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=24.84 E-value=84 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=17.1
Q ss_pred chHHHHHHhhHHHHHHHHHHhh-cCCCh
Q psy12745 60 SWRIFLIVSTFPSLAGALLVFF-IPESP 86 (175)
Q Consensus 60 ~Wr~~~~~~~i~~~~~~~~~~~-lpESP 86 (175)
.|-.++++..++..+++..+.| +||+.
T Consensus 3 kw~l~Lc~~SF~~G~lft~R~W~~pe~~ 30 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLFTNRMWTVPESK 30 (95)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCCccc
Confidence 4655666666666666666666 67764
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.73 E-value=97 Score=17.73 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.2
Q ss_pred HhcCChHHHHHHHHHHhhccCC
Q psy12745 90 MTHGRSDDALDVFQSMYARNTG 111 (175)
Q Consensus 90 ~~~g~~~~a~~~l~~l~~~~~~ 111 (175)
..+|+.++|...+++....+++
T Consensus 42 ~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 42 YQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcC
Confidence 4678888888888877655443
No 212
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.60 E-value=56 Score=27.82 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=30.8
Q ss_pred CCCCchhhHHHhHHHHhh-cCCccchhHHHHHHH-HHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNR-SHAFSHTPFVKGLVI-AYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 76 (175)
|++--|...++...+..+ |. ..+.+. ++.. +..+|-..|++-.+.+++..
T Consensus 376 pK~AaGtA~Gf~Glf~Yl~Ga-------~~a~~~~g~i~-------------d~~gW~g~Fi~~~~~a~l~~ 427 (448)
T COG2271 376 PKKAAGTATGFVGLFAYLIGA-------ALAGLPLGYIA-------------DTWGWDGGFIVLSIAALLAI 427 (448)
T ss_pred cHhhccchhchhhhHHHHhhH-------HhcCCcceeeE-------------ecCCCcchHHHHHHHHHHHH
Confidence 787888888888777666 44 333322 2221 23688888887766555543
No 213
>PF15192 TMEM213: TMEM213 family
Probab=22.75 E-value=1.6e+02 Score=18.49 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.0
Q ss_pred HHhhcCCChHHH
Q psy12745 78 LVFFIPESPKFL 89 (175)
Q Consensus 78 ~~~~lpESP~~L 89 (175)
+....||-|++|
T Consensus 69 lmKLtPdepK~l 80 (82)
T PF15192_consen 69 LMKLTPDEPKDL 80 (82)
T ss_pred HhccCCCCcccc
Confidence 344568888776
No 214
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=22.06 E-value=2.1e+02 Score=24.53 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE 84 (175)
|+.+.+..-+++.+.--... .+|+++--.+.... -+-|..+....+..++.+++..+.++
T Consensus 410 P~g~e~efFgly~i~gk~ss-------~lGPll~g~i~~~t-----------g~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 410 PPGREAEFFGLYAITGKASS-------WLGPLLFGLITDAT-----------GSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred CCchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----------CCchhHHHHHHHHHHHHHHHHhhccc
Confidence 78888888888887766666 77776655543321 24566655554544444444444433
No 215
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=21.91 E-value=2.7e+02 Score=22.65 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=30.5
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL 73 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~ 73 (175)
++++..+.......+|. .+|+.++-.+.. ..+++.++..++...+
T Consensus 337 ~~~~~~~~~~~~~~lg~-------~~G~~l~G~l~~------------~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 337 QAEKAGSIQVAVIQLAN-------TCGAAIGGYALD------------NIGLTSPLMLSGTLML 381 (394)
T ss_pred cHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------ccChhhHHHHHHHHHH
Confidence 45666666667777787 788877776632 3578888877765443
No 216
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.44 E-value=2.6e+02 Score=18.62 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745 34 VKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA 74 (175)
Q Consensus 34 ~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~ 74 (175)
++|.+++.++=... .+...|-+++++.++...+
T Consensus 57 l~G~~lG~WLD~~~--------~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 57 LLGVAVGIWLDRHY--------PSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHH
Confidence 77888888872221 1223566666655554433
No 217
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=21.17 E-value=1.8e+02 Score=24.70 Aligned_cols=62 Identities=5% Similarity=-0.139 Sum_probs=36.3
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccc-----c--ccccchHHHHHHhhHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFD-----F--FLMCSWRIFLIVSTFPSLAG 75 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-----~--~~~~~Wr~~~~~~~i~~~~~ 75 (175)
|++.-...+++.+.+..+|. +++++++-.+....+...+.. . .....||.++...+...+++
T Consensus 134 ~~~~a~~rlnl~q~fn~lGa-------~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll 202 (422)
T COG0738 134 KPESAAFRLNLAQAFNGLGA-------ILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLL 202 (422)
T ss_pred CchhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34456677888899999999 888888766654211101100 0 12235777777665544443
No 218
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=20.70 E-value=29 Score=28.24 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.8
Q ss_pred HhhcCCChHHH
Q psy12745 79 VFFIPESPKFL 89 (175)
Q Consensus 79 ~~~lpESP~~L 89 (175)
-+.+||||||-
T Consensus 201 GLsmPhSPRWh 211 (335)
T TIGR03032 201 GLSMPHSPRWY 211 (335)
T ss_pred CccCCcCCcEe
Confidence 45689999994
No 219
>KOG2563|consensus
Probab=20.41 E-value=96 Score=26.72 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=24.5
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhc
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIP 45 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~ 45 (175)
|+++|......-.++-.+|. .++.++.-.+.+
T Consensus 170 ~~~qra~A~~~~v~~n~LGv-------avg~llppilV~ 201 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGV-------AVGFLLPPILVP 201 (480)
T ss_pred CcchhhhhhhHHHhcchHHH-------HHHhhccceecC
Confidence 88899999888888888888 766666655544
No 220
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.41 E-value=3.6e+02 Score=23.24 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=32.4
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHH-HHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGL-VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA 76 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~ 76 (175)
.+|+-|..-+......=+|. .++. +.++.+....+..+.........+-+.+.+..+|+++..
T Consensus 364 G~R~eGi~~s~~tF~~K~g~-------ala~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l 427 (467)
T COG2211 364 GVRREGIVYSGMTFFRKLGL-------ALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLL 427 (467)
T ss_pred CCCchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555777777777777777 5555 445554443333222111112234445555555655543
No 221
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.12 E-value=1.1e+02 Score=19.88 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=17.5
Q ss_pred ccchHHHHHHhhHHHHHHHHHH
Q psy12745 58 MCSWRIFLIVSTFPSLAGALLV 79 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~~~~~~~~ 79 (175)
..-||-+.++.++|++++..+-
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n 34 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLN 34 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHH
Confidence 4689999999999988765553
Done!