Query psy12745
Match_columns 175
No_of_seqs 128 out of 1379
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:36:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.5 6E-15 2E-19 121.7 0.9 143 7-160 156-308 (491)
2 3o7q_A L-fucose-proton symport 97.0 0.001 3.5E-08 53.2 5.7 74 7-87 147-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 96.8 0.0003 1E-08 56.5 1.4 64 7-89 149-214 (451)
4 2gfp_A EMRD, multidrug resista 96.8 0.00023 7.8E-09 56.1 0.7 63 7-88 118-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 95.1 0.029 9.9E-07 45.6 5.4 52 7-77 138-191 (491)
6 2xut_A Proton/peptide symporte 92.1 0.17 5.9E-06 41.3 4.9 53 7-78 139-194 (524)
7 4gc0_A D-xylose-proton symport 91.8 0.089 3E-06 42.6 2.7 67 7-86 400-467 (491)
8 4aps_A DI-OR tripeptide H+ sym 88.6 0.51 1.8E-05 38.0 4.7 59 7-85 416-475 (491)
9 1pw4_A Glycerol-3-phosphate tr 87.5 0.55 1.9E-05 37.2 4.2 54 7-79 376-430 (451)
10 2cfq_A Lactose permease; trans 73.6 0.29 9.8E-06 39.1 -2.2 57 10-86 135-192 (417)
11 2xut_A Proton/peptide symporte 72.8 5.8 0.0002 32.1 5.5 30 7-43 435-464 (524)
12 2cfq_A Lactose permease; trans 72.1 0.82 2.8E-05 36.3 0.2 61 7-86 342-404 (417)
13 3sk7_A Protein SEQA; sequestra 29.3 13 0.00045 24.5 0.3 25 81-105 74-98 (116)
14 1v54_G Cytochrome C oxidase po 26.3 76 0.0026 19.6 3.4 24 58-81 13-36 (85)
15 1j3e_A SEQA protein; protein-D 23.7 19 0.00066 23.7 0.3 25 81-105 73-97 (115)
16 3o7q_A L-fucose-proton symport 23.4 55 0.0019 25.2 3.0 50 7-77 377-427 (438)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.47 E-value=6e-15 Score=121.69 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP 86 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP 86 (175)
|+++||+..++.+.++.+|. +++.++++.......... .+.+.||+++.+..+++++.++.++++||||
T Consensus 156 p~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQ-------LLVYCVNYFIARSGDASW----LNTDGWRYMFASECIPALLFLMLLYTVPESP 224 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCTTT----TTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred CHHhhhhhHHhhhhhhhhhh-------hhhhhcchhhcccccccc----ccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence 88899999999999999999 999999888754331111 2347899999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhccCCCCCCcccc----------cccccCCchhHHHHHHHHhcceeecceeEeechhhHH
Q psy12745 87 KFLMTHGRSDDALDVFQSMYARNTGKPKDSYPV----------KSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQ 156 (175)
Q Consensus 87 ~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 156 (175)
|||..|++.|++++.+++...++..+.+..... ....................+++.+.+.+.+|.+.++
T Consensus 225 ~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (491)
T 4gc0_A 225 RWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence 999999999999999998866542211110000 0000111112222222333477788888888888888
Q ss_pred hhhc
Q psy12745 157 EIEE 160 (175)
Q Consensus 157 ~~~~ 160 (175)
+..+
T Consensus 305 ~~~~ 308 (491)
T 4gc0_A 305 KTLG 308 (491)
T ss_dssp HHSS
T ss_pred HhcC
Confidence 7766
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.98 E-value=0.001 Score=53.22 Aligned_cols=74 Identities=12% Similarity=-0.029 Sum_probs=46.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh-ccccCCc-----------ccc--cccccchHHHHHHhhHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII-PIKWTYP-----------VFD--FFLMCSWRIFLIVSTFPS 72 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~-~~~~~~~-----------~~~--~~~~~~Wr~~~~~~~i~~ 72 (175)
|+++|++..++.+....+|. ++++.++..+. ....... ..+ .....+||+++++.+++.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 219 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGA-------IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIV 219 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHH
Confidence 78899999999999999999 99999887775 3210000 000 000011999997766655
Q ss_pred HHHHHH--HhhcCCChH
Q psy12745 73 LAGALL--VFFIPESPK 87 (175)
Q Consensus 73 ~~~~~~--~~~lpESP~ 87 (175)
++..+. ....||+++
T Consensus 220 ~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 220 LLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHcCCcccc
Confidence 554333 333688764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.84 E-value=0.0003 Score=56.50 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAG-ALLVFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~-~~~~~~lpE 84 (175)
|+++|++..++.+....+|. ++++.++..+.. ..+ ||+++++.+++.++. ++..+++||
T Consensus 149 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 149 SQKERGGIVSVWNCAHNVGG-------GIPPLLFLLGMA------------WFNDWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp TTTHHHHHHHHHHHHHHHHH-------TSHHHHHHHHHH------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred CchhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhccHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77899999999999999999 888888765532 246 999999888877664 445677899
Q ss_pred ChHHH
Q psy12745 85 SPKFL 89 (175)
Q Consensus 85 SP~~L 89 (175)
+|+..
T Consensus 210 ~~~~~ 214 (451)
T 1pw4_A 210 TPQSC 214 (451)
T ss_dssp SSTTT
T ss_pred CHhhc
Confidence 99764
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.84 E-value=0.00023 Score=56.12 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=51.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES 85 (175)
|+++|++..+..+....+|. ++++.++..+.. ..+||..+.+.++..++..+ ..+++||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 118 ERTQLRHANSLLNMGILVSP-------LLAPLIGGLLDT------------MWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HTSSCCSHHHHHHHHHHHHH-------HHHHHHHHHSSC------------HHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHH------------hccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 67799999999999999999 999999887732 35899999988777766554 55678998
Q ss_pred hHH
Q psy12745 86 PKF 88 (175)
Q Consensus 86 P~~ 88 (175)
|+.
T Consensus 179 ~~~ 181 (375)
T 2gfp_A 179 RPV 181 (375)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.13 E-value=0.029 Score=45.55 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=39.5
Q ss_pred CCCC--chhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745 7 TKRD--TKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 7 p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 77 (175)
|+++ |+...++.+...++|. ++++.++..+.. ..+||++|.+.++..++..+
T Consensus 138 ~~~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 138 DEHDRRRDAGFSIFVFGINLGA-------FIAPLIVGAAQE------------AAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccceeeehHHHHHHHHHH-------HHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHHH
Confidence 5666 7778888889999999 999888877643 36899999988766555433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=92.14 E-value=0.17 Score=41.33 Aligned_cols=53 Identities=2% Similarity=-0.104 Sum_probs=39.2
Q ss_pred CCCCchhhHHH---hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745 7 TKRDTKKIIYW---RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL 78 (175)
Q Consensus 7 p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 78 (175)
|+++|+...+. .+...++|. ++++.++..+.. ..+||++|.+.++..++..+.
T Consensus 139 ~~~~r~~~~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 139 DQSNKSLAQKAFDMFYFTINFGS-------FFASLSMPLLLK------------NFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHH-------HHHHHTSTHHHH------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHH
Confidence 77788876666 788888888 888877666632 358999999887776654444
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=91.77 E-value=0.089 Score=42.56 Aligned_cols=67 Identities=6% Similarity=-0.149 Sum_probs=38.0
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES 85 (175)
|.+.|+...++......+|. ++++.+.-.+.... ......++...+++.+..+++. ++..+++||+
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~-------~i~~~~~p~l~~~~------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLAN-------YFVSWTFPMMDKNS------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHH-------HHHHTHHHHHCHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88999999998877777766 55544432221100 0001124445555555555554 4556789998
Q ss_pred h
Q psy12745 86 P 86 (175)
Q Consensus 86 P 86 (175)
-
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 3
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=88.60 E-value=0.51 Score=38.04 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=37.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES 85 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES 85 (175)
|++.||...++.+....+|. .+++.+.-.+ .+.++...+.+.++..++..+. ..+.++.
T Consensus 416 p~~~~g~~~g~~~~~~~~g~-------~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGS-------ALNAQLVTLY-------------NAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHH-------HHHHHHGGGG-------------GGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------------hcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999 8887775544 1235555666665555554333 3334443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=87.52 E-value=0.55 Score=37.16 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=41.7
Q ss_pred CCCCchhhHHHhHHHHhh-cCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNR-SHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV 79 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~ 79 (175)
|++.||...++.+....+ |. .+++.+...+.. ..+|+..+++.++..++..+..
T Consensus 376 ~~~~~g~~~~~~~~~~~~~g~-------~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 376 PKKAAGTAAGFTGLFGYLGGS-------VAASAIVGYTVD------------FFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------SSCSHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCcHHHHHHHHHHHHHHHHHH
Confidence 788899999999999998 99 888877666532 3589999888877666654443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=73.56 E-value=0.29 Score=39.06 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=35.4
Q ss_pred CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc-CCCh
Q psy12745 10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI-PESP 86 (175)
Q Consensus 10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l-pESP 86 (175)
+|+...+.......+|. .+++.++..+.. .+||.+|++.+++.++..+..++. ||+|
T Consensus 135 ~~~~~~g~~~~~~~~g~-------~~~~~l~~~l~~-------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGW-------ALGASIVGIMFT-------------INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HHTCCHHHHSSSTTTHH-------HHHHHHHHHHHH-------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred hcccchHHHHHHHHHHH-------HHHHHHHHHHHH-------------hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 44555555555666666 777777665521 479999998877765555554444 4543
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=72.83 E-value=5.8 Score=32.07 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=26.6
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI 43 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~ 43 (175)
|++.||...++.+....+|. .+++.+.-.+
T Consensus 435 p~~~~g~~~g~~~~~~~~g~-------~~g~~~~g~~ 464 (524)
T 2xut_A 435 PKAMKGTIMSFWTLSVTVGN-------LWVLLANVSV 464 (524)
T ss_dssp CTTCCTTTHHHHGGGHHHHH-------HHHHHHHHHT
T ss_pred cHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 88899999999999999999 8888877665
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=72.07 E-value=0.82 Score=36.34 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=39.1
Q ss_pred CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCC
Q psy12745 7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPE 84 (175)
Q Consensus 7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpE 84 (175)
|++.||...++ .+....+|. .+++.++-.+.. ..+|+..|.+.++.+++..+. ..+.||
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~-------~~gp~l~G~l~~------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAM-------IFMSVLAGNMYE------------SIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHH-------HHHTHHHHTHHH------------HSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhHHH-------HHhhhhHHHHHH------------hcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 77888887776 366666777 777666554422 247888888777766665444 344565
Q ss_pred Ch
Q psy12745 85 SP 86 (175)
Q Consensus 85 SP 86 (175)
.+
T Consensus 403 ~~ 404 (417)
T 2cfq_A 403 PG 404 (417)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 13
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=29.25 E-value=13 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=19.3
Q ss_pred hcCCChHHHHhcCChHHHHHHHHHH
Q psy12745 81 FIPESPKFLMTHGRSDDALDVFQSM 105 (175)
Q Consensus 81 ~lpESP~~L~~~g~~~~a~~~l~~l 105 (175)
-+|+||-|.+...+..+.+..+..+
T Consensus 74 ~Ip~TpfWViTN~NT~rKr~ml~~v 98 (116)
T 3sk7_A 74 AIPNTPFWVITNNNTSRKQQMVEQV 98 (116)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHH
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHH
Confidence 3699999988887877776666655
No 14
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=26.34 E-value=76 Score=19.59 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=18.4
Q ss_pred ccchHHHHHHhhHHHHHHHHHHhh
Q psy12745 58 MCSWRIFLIVSTFPSLAGALLVFF 81 (175)
Q Consensus 58 ~~~Wr~~~~~~~i~~~~~~~~~~~ 81 (175)
..-||-+.++.++|++++..+-.+
T Consensus 13 ~~~Wkkis~~va~P~v~l~~~n~y 36 (85)
T 1v54_G 13 ARTWRFLTFGLALPSVALCTLNSW 36 (85)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998887655444
No 15
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=23.72 E-value=19 Score=23.68 Aligned_cols=25 Identities=12% Similarity=0.456 Sum_probs=18.6
Q ss_pred hcCCChHHHHhcCChHHHHHHHHHH
Q psy12745 81 FIPESPKFLMTHGRSDDALDVFQSM 105 (175)
Q Consensus 81 ~lpESP~~L~~~g~~~~a~~~l~~l 105 (175)
-+|+||-|-....+..+.+..+.++
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~v 97 (115)
T 1j3e_A 73 HVPGTPYWVITNTNTGRKCSMIEHI 97 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHH
T ss_pred cCCCCCeeeeecCChHHHHHHHHHH
Confidence 3699999988777777766666655
No 16
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.44 E-value=55 Score=25.22 Aligned_cols=50 Identities=6% Similarity=-0.224 Sum_probs=28.1
Q ss_pred CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHHHH
Q psy12745 7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAGAL 77 (175)
Q Consensus 7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~ 77 (175)
|++ |+...++.. ...+|. .+++.+.-.+.. ..+ ++..+.+..+..++..+
T Consensus 377 ~~~-~~~~~~~~~-~~~~g~-------~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 377 GQD-TKYGSSFIV-MTIIGG-------GIVTPVMGFVSD------------AAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp GGG-HHHHHHHHH-HTTHHH-------HHHHHHHHHHHH------------HHTSSGGGGHHHHHHHHHHHH
T ss_pred ccc-ccchhhHHH-HHHHHH-------HHHHHHHHHHHH------------HhcchHHHHHHHHHHHHHHHH
Confidence 443 777666655 344666 677766555532 235 77777766554443333
Done!