RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12745
(175 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.14
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 27/100 (27%)
Query: 67 VSTFPSLAGALLVFFIPESPKFLMT---H-------GRSDDAL----DVFQSMY-ARN-T 110
V F + L F E+ +L H +D L ++ ++ AR
Sbjct: 77 VGQFDQVLNLCLTEF--EN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 111 GKPKDSYPVKSLMGAPPTSICALLMLFG--------LKEL 142
+P D +L A L+ +FG +EL
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Score = 30.4 bits (68), Expect = 0.37
Identities = 24/191 (12%), Positives = 53/191 (27%), Gaps = 76/191 (39%)
Query: 50 YPVF-------DFF--LMCSWRIF-LIVSTFPSLAGALLVFFI--PESPKFLMTHGRSDD 97
+F D+F L ++ + ++V + L I + + T G
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---- 212
Query: 98 ALDVFQSMYARNTGKPKDSY----PVKSL-----------------MGAPP--------- 127
L++ + + + P Y P+ S +G P
Sbjct: 213 -LNILEWLENPSN-TPDKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 128 TSIC-------------------------ALLMLF--GLKELTVEERVITRPTSIQEIEE 160
+ A+ +LF G++ P+ +++ E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 161 EGDDMTHSMVS 171
+ + M+S
Sbjct: 330 NNEGVPSPMLS 340
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.0 bits (65), Expect = 0.76
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 26/92 (28%)
Query: 94 RSDDALDVFQSMYARNTG----------KPKD------SYPVKSLMGAPPTSICALLMLF 137
R +A +FQ+M +TG S P + P + + L +
Sbjct: 343 RGREAQTLFQAM---STGHASYSTLHAGDINQMVYRLESEP----LKVPRSMLQFLDIAL 395
Query: 138 GLKELTVEERVITRPTSIQEI---EEEGDDMT 166
+ R + EI + ++
Sbjct: 396 VQTMWVRGNTRLRRTKEVNEILGIDPVDKNLL 427
>1tme_2 Theiler'S murine encephalomyelitis virus (subunit VP2); icosahedral
virus; 2.80A {Theiler} PDB: 1tmf_2 2mev_2 1mec_2
Length = 267
Score = 28.3 bits (63), Expect = 1.3
Identities = 17/137 (12%), Positives = 32/137 (23%), Gaps = 26/137 (18%)
Query: 11 TKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWT---YPVFD-----FFLM-CSW 61
++ W + + +P VF +L W
Sbjct: 59 AERYYTIDLASWTTTQEAFSHIRIP--------LPHVLAGEDGGVFGATLRRHYLCKTGW 110
Query: 62 RIFLIVSTFPSLAGALLVFFIPE--------SPKFLMTHGRSDDALDVFQSMYARNTGKP 113
R+ + + AG+LLVF PE + T + D
Sbjct: 111 RVQVQCNASQFHAGSLLVFMAPEFYTGKGTKTGDMEPTDPFTMDTTWRAPQGAPTGYRYD 170
Query: 114 KDSYPVKSLMGAPPTSI 130
+ ++
Sbjct: 171 SRT-GFFAMNHQNQWQW 186
>2ws9_2 P1; 3.00A {Equine rhinitis a virus} PDB: 2xbo_2* 2wff_2
Length = 230
Score = 27.7 bits (61), Expect = 2.1
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 11 TKKIIYWRRVDWNRSHAFSHT---PFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLI 66
+ ++ +W S + H P + + V L+ W + +
Sbjct: 58 LSRHYTFKVGEWPHSQSHGHAWICPLPSDKLKKMGS----FHEVVKAHHLVKNGWDVVVQ 113
Query: 67 VSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
V+ + +GAL V +PE + TH ++
Sbjct: 114 VNASFAHSGALCVAAVPE---YEHTHEKALK 141
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 2.4
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 71 PSLAGALLVFFI-PESPKFLMTHGRSDDALDVFQSM--------YARNTGKPKDSYPVKS 121
L GAL + + + HG S A D +S R+ G P K
Sbjct: 1321 APLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKF 1380
Query: 122 LMGAPPTSICALLMLFGLKELTVEERVITRPT-SIQEIEEEGDDMTH 167
L G P + A +M L + +I + +++ + +
Sbjct: 1381 LTGHPKGAAGAWMMNGAL--QILNSGIIP-GNRNADNVDKILEQFEY 1424
>1qqp_2 FMDV, protein (genome polyprotein); heparan sulphate,
virus-receptor interactions/protein carbohydrate
interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth
disease virus} PDB: 1fod_2 1bbt_2* 1fmd_2 1qgc_2 1zba_2*
1zbe_2 2wzr_2
Length = 218
Score = 27.3 bits (60), Expect = 2.6
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 16 YWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLIVSTFPSLA 74
DW S +F ++ + + + M W + +
Sbjct: 63 KTHLFDWVTSDSFGRCHLLELPTDHKGV----YGSLTDSYAYMRNGWDVEVTAVGNQFNG 118
Query: 75 GALLVFFIPESPKF 88
G LLV +PE
Sbjct: 119 GCLLVAMVPELCSI 132
>3cji_C Polyprotein; virus capsid protein structure, ATP-binding,
cytoplasm, cytoplasmic vesicle, helicase, hydrolase,
membrane, nucleotide-binding; 2.30A {Seneca valley
virus}
Length = 284
Score = 27.2 bits (60), Expect = 2.6
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 5/129 (3%)
Query: 16 YWRRVDWNRSHAFSHT---PFVKGLVIAYFIIPIK-WTYPVFDFFLM-CSWRIFLIVSTF 70
R W ++ P + + +T + FLM C W++ + +
Sbjct: 65 TGRLNSWTKAVKTFSFQAVPLPGAFLSRQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLT 124
Query: 71 PSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSI 130
GALLV +PE+ + G++ ++ + + + + +
Sbjct: 125 QFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGKNMPFQSLGTYYRP 184
Query: 131 CALLMLFGL 139
Sbjct: 185 PNWTWGPNF 193
>3vbh_B EV71, genome polyprotein, capsid protein VP2; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_B* 3vbs_B* 4aed_B* 3vbo_B 3vbr_B 3vbu_B 4agy_B
4agx_B
Length = 245
Score = 27.1 bits (60), Expect = 2.8
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 74 AGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICAL 133
GALLV +PE + G + + +P G P +
Sbjct: 110 QGALLVAVLPEYVIGTVAGGTGTEDTHPPYKQTQPGADGFELQHPYVLDAGIPISQ---- 165
Query: 134 LMLF 137
L +
Sbjct: 166 LTVC 169
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral
virus; HET: MYR SPH; 2.80A {Human poliovirus 1} SCOP:
b.121.4.1
Length = 340
Score = 25.7 bits (56), Expect = 8.7
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 14/60 (23%)
Query: 74 AGALLVFFIPE------------SPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKS 121
GAL VF +PE + + + F + + + +
Sbjct: 187 QGALGVFAVPEMCLAGDSNTTTMHTSYQNAN--PGEKGGTFTGTFTPDNNQTSPARRFCP 244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.437
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,729,969
Number of extensions: 152551
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 20
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)