RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12745
         (175 letters)



>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
           virus) coat proteins {FMDV (Foot-and-mouth disease
           virus), strain bfs, 1860 [TaxId: 12110]}
          Length = 289

 Score = 32.2 bits (73), Expect = 0.026
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 20  VDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLIVSTFPSLAGALL 78
            DW  S +F     ++       +    +      +  M   W + +         G LL
Sbjct: 138 FDWVTSDSFGRCHLLELPTDHKGV----YGSLTDSYAYMRNGWDVEVTAVGNQFNGGCLL 193

Query: 79  VFFIPE 84
           V  +PE
Sbjct: 194 VAMVPE 199


>d1b35b_ b.121.4.1 (B:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 255

 Score = 27.7 bits (61), Expect = 0.76
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 16/98 (16%)

Query: 15  IYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPI-KWTYPVFD-----FFLM-CSWRIFLIV 67
           I      W+ S             +     P    +  ++      F  +  +  + + V
Sbjct: 65  IIIATNLWSVSDPVEK-------QLYTANFPEVLISNAMYQDKLKGFVGLRATLVVKVQV 117

Query: 68  STFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSM 105
           ++ P   G L++ +IP      M +  +     +    
Sbjct: 118 NSQPFQQGRLMLQYIP--YAQYMPNRVTLINETLQGRS 153


>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
           enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 284

 Score = 27.2 bits (60), Expect = 0.92
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 53  FDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE 84
           F +     W + +  +      G LLV  IPE
Sbjct: 134 FHYLYRGGWAVHVQCNATKFHQGTLLVLAIPE 165


>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
           rhinovirus 16, (HRV-16) [TaxId: 31708]}
          Length = 296

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 20  VDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLIVSTFPSLAGALL 78
             WN +           L          +   +F  FL    + + +  +      G LL
Sbjct: 104 KMWNSTSKGWWWKLPDALKDMGI-----FGENMFYHFLGRSGYTVHVQCNASKFHQGTLL 158

Query: 79  VFFIPE 84
           V  IPE
Sbjct: 159 VVMIPE 164


>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
           coxsackievirus A9 [TaxId: 12067]}
          Length = 320

 Score = 24.8 bits (54), Expect = 6.1
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 56  FLM-CSWRIFLIVSTFPSLAGALLVFFIPE 84
           +L    + I +  +      G LLV  +PE
Sbjct: 159 YLGRAGYTIHVQCNASKFHQGCLLVVCVPE 188


>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
           rhinovirus B 14 (HRV-14) [TaxId: 12131]}
          Length = 295

 Score = 24.8 bits (54), Expect = 7.2
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 59  CSWRIFLIVSTFPSLAGALLVFFIPE 84
             + + +  +     +G LLV  IPE
Sbjct: 137 SGYTVHVQCNATKFHSGCLLVVVIPE 162


>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
           proteins {Mengovirus [TaxId: 12107]}
          Length = 307

 Score = 24.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 55  FFLM-CSWRIFLIVSTFPSLAGALLVFFIPE 84
            +L+   WR+ +  +     AG+LLVF  PE
Sbjct: 154 HYLVKTGWRVQVQCNASQFHAGSLLVFMAPE 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,548
Number of extensions: 29726
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 11
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)